AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1188390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1188390 MtrunA17_Chr8g0356071 92.169 166 10 1 1 166 1 163 1.05e-108 307
Msa1188390 MtrunA17_Chr8g0357771 62.712 177 63 1 1 174 1 177 2.16e-75 223
Msa1188390 MtrunA17_Chr1g0169761 57.714 175 71 1 1 172 1 175 3.60e-68 205
Msa1188390 MtrunA17_Chr4g0074101 53.646 192 69 1 1 172 1 192 9.65e-68 204
Msa1188390 MtrunA17_Chr8g0376821 58.683 167 66 1 1 164 1 167 3.80e-65 197
Msa1188390 MtrunA17_Chr1g0180591 54.286 175 77 1 1 172 1 175 2.57e-62 190
Msa1188390 MtrunA17_Chr1g0175601 53.977 176 77 2 1 172 1 176 2.45e-59 182
Msa1188390 MtrunA17_Chr1g0175611 52.976 168 76 1 1 165 1 168 1.30e-58 180
Msa1188390 MtrunA17_Chr4g0052061 38.554 166 83 5 1 161 1 152 4.88e-31 110
Msa1188390 MtrunA17_Chr1g0206991 44.737 114 56 2 2 108 9 122 1.23e-26 99.8
Msa1188390 MtrunA17_Chr3g0099411 39.456 147 68 3 2 141 9 141 1.42e-26 100
Msa1188390 MtrunA17_Chr1g0206721 45.614 114 55 2 2 108 9 122 3.16e-26 100
Msa1188390 MtrunA17_Chr3g0119901 45.378 119 57 3 1 114 8 123 3.18e-26 99.4
Msa1188390 MtrunA17_Chr3g0099421 51.546 97 42 2 2 93 34 130 3.31e-26 100
Msa1188390 MtrunA17_Chr5g0419601 53.846 78 36 0 1 78 8 85 4.54e-25 97.1
Msa1188390 MtrunA17_Chr3g0085241 43.802 121 63 2 1 116 40 160 7.85e-25 96.7
Msa1188390 MtrunA17_Chr5g0422941 55.844 77 34 0 2 78 9 85 1.11e-24 95.9
Msa1188390 MtrunA17_Chr1g0206701 47.525 101 48 1 2 97 9 109 1.14e-24 95.9
Msa1188390 MtrunA17_Chr2g0292791 43.590 117 59 2 2 111 9 125 1.72e-24 95.5
Msa1188390 MtrunA17_Chr1g0188671 57.143 77 33 0 2 78 47 123 3.68e-24 95.5
Msa1188390 MtrunA17_Chr1g0208581 38.095 147 65 2 2 122 9 155 3.68e-24 94.4
Msa1188390 MtrunA17_Chr8g0355091 45.545 101 50 1 2 97 9 109 7.51e-24 93.6
Msa1188390 MtrunA17_Chr3g0089141 42.149 121 65 2 2 117 9 129 7.90e-24 93.6
Msa1188390 MtrunA17_Chr1g0149391 37.423 163 87 3 2 149 9 171 9.18e-24 93.6
Msa1188390 MtrunA17_Chr1g0187361 55.844 77 34 0 2 78 9 85 1.37e-23 93.2
Msa1188390 MtrunA17_Chr4g0052081 51.316 76 37 0 1 76 1 76 1.39e-23 91.7
Msa1188390 MtrunA17_Chr1g0208561 45.045 111 55 3 2 107 9 118 1.52e-23 92.8
Msa1188390 MtrunA17_Chr2g0333981 37.313 134 78 3 1 133 11 139 1.57e-23 91.3
Msa1188390 MtrunA17_Chr2g0325971 37.415 147 66 1 2 122 9 155 1.61e-23 92.8
Msa1188390 MtrunA17_Chr5g0422421 53.247 77 36 0 2 78 9 85 7.99e-23 90.9
Msa1188390 MtrunA17_Chr4g0018951 37.879 132 66 3 17 135 27 155 1.13e-22 89.0
Msa1188390 MtrunA17_Chr3g0089151 51.948 77 37 0 2 78 9 85 2.19e-22 87.0
Msa1188390 MtrunA17_Chr2g0300441 35.714 154 84 2 2 140 9 162 2.27e-22 89.7
Msa1188390 MtrunA17_Chr8g0379021 37.226 137 78 4 2 136 12 142 2.33e-22 88.6
Msa1188390 MtrunA17_Chr2g0317451 53.247 77 36 0 2 78 9 85 2.89e-22 89.7
Msa1188390 MtrunA17_Chr2g0317481 53.247 77 36 0 2 78 9 85 3.08e-22 89.4
Msa1188390 MtrunA17_Chr2g0300421 41.441 111 59 2 2 107 9 118 2.59e-21 85.5
Msa1188390 MtrunA17_Chr1g0206691 41.593 113 57 2 18 125 8 116 9.87e-21 85.1
Msa1188390 MtrunA17_Chr5g0404951 53.125 64 30 0 1 64 1 64 1.36e-19 82.4
Msa1188390 MtrunA17_Chr4g0020221 52.174 69 33 0 1 69 1 69 3.99e-19 81.6
Msa1188390 MtrunA17_Chr1g0187351 60.000 55 22 0 18 72 8 62 8.79e-19 76.3
Msa1188390 MtrunA17_Chr5g0427401 48.611 72 37 0 1 72 1 72 3.50e-18 78.6
Msa1188390 MtrunA17_Chr7g0238991 55.556 63 28 0 16 78 35 97 5.40e-18 78.6
Msa1188390 MtrunA17_Chr4g0071601 47.436 78 41 0 1 78 11 88 1.55e-17 75.9
Msa1188390 MtrunA17_Chr8g0380021 34.862 109 71 0 1 109 17 125 2.75e-17 76.6
Msa1188390 MtrunA17_Chr5g0427921 55.000 60 27 0 1 60 1 60 5.65e-17 71.2
Msa1188390 MtrunA17_Chr3g0097101 49.275 69 35 0 1 69 16 84 6.03e-17 75.5
Msa1188390 MtrunA17_Chr2g0279821 40.230 87 51 1 1 87 1 86 6.27e-17 75.5
Msa1188390 MtrunA17_Chr4g0049901 38.462 117 63 2 1 108 27 143 8.55e-17 75.1
Msa1188390 MtrunA17_Chr5g0411691 47.826 69 36 0 1 69 1 69 9.01e-17 75.1
Msa1188390 MtrunA17_Chr8g0351041 36.893 103 62 2 1 101 1 102 9.66e-17 73.6
Msa1188390 MtrunA17_Chr1g0173161 46.250 80 40 1 1 80 1 77 1.16e-16 70.9
Msa1188390 MtrunA17_Chr2g0284911 30.000 170 102 4 1 156 16 182 1.45e-16 74.7
Msa1188390 MtrunA17_Chr4g0049541 44.928 69 38 0 1 69 1 69 1.45e-16 74.3
Msa1188390 MtrunA17_Chr8g0351051 46.377 69 37 0 1 69 1 69 1.88e-16 74.3
Msa1188390 MtrunA17_Chr3g0077501 44.928 69 38 0 1 69 1 69 2.54e-16 73.6
Msa1188390 MtrunA17_Chr3g0111931 50.820 61 30 0 18 78 6 66 3.06e-16 70.5
Msa1188390 MtrunA17_Chr3g0111841 58.333 48 20 0 18 65 12 59 4.49e-16 69.3
Msa1188390 MtrunA17_Chr8g0351031 36.893 103 62 2 1 101 1 102 5.23e-16 72.8
Msa1188390 MtrunA17_Chr3g0142191 48.611 72 35 1 1 72 1 70 7.69e-16 72.4
Msa1188390 MtrunA17_Chr5g0412271 42.857 84 47 1 1 84 1 83 1.31e-15 71.6
Msa1188390 MtrunA17_Chr7g0246431 33.663 101 67 0 1 101 1 101 1.47e-15 71.2
Msa1188390 MtrunA17_Chr5g0412461 42.857 84 47 1 1 84 1 83 1.67e-15 71.6
Msa1188390 MtrunA17_Chr1g0164791 46.479 71 36 1 1 69 1 71 3.58e-15 70.5
Msa1188390 MtrunA17_Chr4g0044071 55.172 58 26 0 1 58 1 58 6.41e-15 67.4
Msa1188390 MtrunA17_Chr4g0057151 43.478 69 39 0 1 69 1 69 6.74e-15 69.3
Msa1188390 MtrunA17_Chr2g0308251 40.698 86 46 2 1 85 1 82 1.04e-14 65.9
Msa1188390 MtrunA17_Chr4g0018421 44.444 72 39 1 1 71 1 72 1.18e-14 68.6
Msa1188390 MtrunA17_Chr5g0420091 50.877 57 28 0 1 57 1 57 1.50e-14 68.6
Msa1188390 MtrunA17_Chr7g0220111 50.877 57 28 0 1 57 1 57 1.95e-14 68.9
Msa1188390 MtrunA17_Chr7g0246381 47.059 68 31 1 1 63 1 68 2.38e-14 64.7
Msa1188390 MtrunA17_Chr1g0204111 43.662 71 40 0 1 71 17 87 2.80e-14 68.6
Msa1188390 MtrunA17_Chr4g0061671 48.276 58 30 0 1 58 1 58 2.85e-14 67.4
Msa1188390 MtrunA17_Chr1g0159661 35.345 116 58 3 1 114 1 101 2.87e-14 67.4
Msa1188390 MtrunA17_Chr4g0061691 36.170 94 47 2 1 81 1 94 4.24e-14 67.8
Msa1188390 MtrunA17_Chr5g0425191 56.140 57 25 0 1 57 1 57 4.43e-14 64.7
Msa1188390 MtrunA17_Chr8g0377561 50.877 57 28 0 1 57 1 57 5.44e-14 64.3
Msa1188390 MtrunA17_Chr8g0366231 41.667 72 39 1 1 72 1 69 5.64e-14 67.4
Msa1188390 MtrunA17_Chr3g0122251 52.632 57 27 0 1 57 1 57 5.88e-14 67.4
Msa1188390 MtrunA17_Chr6g0455511 50.877 57 28 0 1 57 1 57 9.05e-14 67.0
Msa1188390 MtrunA17_Chr7g0220121 38.356 73 44 1 1 72 1 73 1.27e-13 66.6
Msa1188390 MtrunA17_Chr3g0125241 41.538 65 38 0 1 65 26 90 1.32e-13 65.9
Msa1188390 MtrunA17_Chr5g0420081 45.614 57 31 0 1 57 1 57 1.71e-13 66.2
Msa1188390 MtrunA17_Chr3g0134451 42.254 71 40 1 1 70 1 71 1.81e-13 67.0
Msa1188390 MtrunA17_Chr8g0345001 36.893 103 54 2 20 122 36 127 1.93e-13 65.1
Msa1188390 MtrunA17_Chr6g0474371 40.278 72 42 1 1 71 1 72 7.10e-13 63.9
Msa1188390 MtrunA17_Chr3g0093131 42.466 73 33 2 19 82 36 108 8.24e-13 63.5
Msa1188390 MtrunA17_Chr3g0111831 52.083 48 23 0 18 65 20 67 1.58e-12 60.5
Msa1188390 MtrunA17_Chr1g0166611 60.870 46 18 0 13 58 17 62 1.75e-12 61.6
Msa1188390 MtrunA17_Chr5g0417661 50.000 54 27 0 1 54 56 109 1.98e-12 61.2
Msa1188390 MtrunA17_Chr4g0025531 31.250 96 54 2 19 108 26 115 1.20e-11 61.2
Msa1188390 MtrunA17_Chr4g0060841 30.075 133 66 2 1 106 1 133 1.81e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1188390 AT2G34440.1 38.596 171 92 2 1 158 1 171 2.65e-35 122
Msa1188390 AT3G66656.1 48.819 127 59 2 1 121 1 127 1.16e-31 112
Msa1188390 AT2G24840.1 43.548 124 59 3 1 117 62 181 3.60e-28 105
Msa1188390 AT5G60440.1 43.662 142 69 4 2 136 7 144 3.00e-27 104
Msa1188390 AT4G36590.1 38.554 166 77 5 2 157 7 157 2.74e-25 98.2
Msa1188390 AT1G01530.1 41.007 139 75 2 1 136 6 140 4.25e-24 95.1
Msa1188390 AT1G65360.1 38.621 145 70 4 1 136 6 140 2.87e-22 89.7
Msa1188390 AT1G72350.1 40.496 121 65 3 2 122 43 156 2.41e-20 84.7
Msa1188390 AT1G47760.1 40.000 95 55 1 1 95 1 93 1.05e-19 82.0
Msa1188390 AT3G61120.1 31.138 167 103 4 1 155 1 167 2.41e-19 82.4
Msa1188390 AT5G65070.4 39.496 119 68 4 1 116 1 118 2.73e-19 80.1
Msa1188390 AT4G24540.1 40.230 87 52 0 1 87 1 87 5.93e-19 80.9
Msa1188390 AT5G65070.1 37.857 140 80 5 1 134 1 139 9.01e-19 80.1
Msa1188390 AT5G13790.2 37.705 122 54 1 1 122 1 100 1.47e-18 80.9
Msa1188390 AT5G13790.1 40.206 97 58 0 1 97 1 97 2.59e-18 80.1
Msa1188390 AT3G57390.3 50.725 69 34 0 1 69 1 69 5.91e-18 78.2
Msa1188390 AT1G28460.1 46.377 69 37 0 2 70 8 76 6.43e-18 77.4
Msa1188390 AT1G29962.1 45.833 72 39 0 2 73 8 79 7.69e-18 77.0
Msa1188390 AT3G57390.1 50.725 69 34 0 1 69 1 69 1.03e-17 78.2
Msa1188390 AT3G57230.2 46.377 69 37 0 1 69 1 69 1.43e-17 75.5
Msa1188390 AT4G22950.2 47.826 69 36 0 1 69 1 69 2.13e-17 75.9
Msa1188390 AT3G57230.1 46.377 69 37 0 1 69 1 69 2.90e-17 76.6
Msa1188390 AT3G57230.4 46.377 69 37 0 1 69 1 69 2.90e-17 76.6
Msa1188390 AT2G22540.3 39.423 104 61 2 1 103 1 103 2.96e-17 76.6
Msa1188390 AT2G22540.1 39.423 104 61 2 1 103 1 103 2.96e-17 76.6
Msa1188390 AT5G65080.3 35.915 142 85 3 1 136 8 149 4.77e-17 75.1
Msa1188390 AT4G09960.2 38.462 91 51 1 1 91 1 86 4.91e-17 75.9
Msa1188390 AT4G09960.6 38.462 91 51 1 1 91 2 87 5.21e-17 75.9
Msa1188390 AT4G09960.1 38.462 91 51 1 1 91 1 86 5.29e-17 75.9
Msa1188390 AT5G65070.2 40.426 94 54 1 1 94 1 92 5.55e-17 75.9
Msa1188390 AT2G45650.1 46.377 69 37 0 1 69 1 69 5.98e-17 76.3
Msa1188390 AT2G22630.1 49.275 69 35 0 1 69 1 69 7.89e-17 75.5
Msa1188390 AT2G22630.2 49.275 69 35 0 1 69 1 69 7.89e-17 75.5
Msa1188390 AT5G65070.5 40.860 93 53 1 1 93 1 91 8.27e-17 75.1
Msa1188390 AT4G09960.5 38.462 91 51 1 1 91 11 96 8.34e-17 75.5
Msa1188390 AT2G45660.2 34.286 105 69 0 1 105 1 105 9.89e-17 73.6
Msa1188390 AT3G04100.1 43.421 76 40 1 2 74 14 89 1.01e-16 74.7
Msa1188390 AT4G09960.3 38.462 91 51 1 1 91 27 112 1.11e-16 75.5
Msa1188390 AT4G09960.4 38.462 91 51 1 1 91 96 181 1.27e-16 76.3
Msa1188390 AT5G10140.2 54.386 57 26 0 1 57 1 57 1.76e-16 73.2
Msa1188390 AT1G17310.1 58.621 58 22 1 17 74 63 118 1.80e-16 74.3
Msa1188390 AT4G22950.3 47.826 69 36 0 1 69 1 69 1.84e-16 74.3
Msa1188390 AT4G22950.1 47.826 69 36 0 1 69 1 69 1.84e-16 74.3
Msa1188390 AT1G17310.2 58.621 58 22 1 17 74 74 129 2.56e-16 73.9
Msa1188390 AT2G45660.1 34.286 105 69 0 1 105 1 105 3.29e-16 73.6
Msa1188390 AT5G10140.3 53.448 58 27 0 1 58 1 58 3.32e-16 72.8
Msa1188390 AT5G10140.4 54.386 57 26 0 1 57 1 57 3.45e-16 72.8
Msa1188390 AT4G37940.1 46.377 69 37 0 1 69 1 69 3.60e-16 73.6
Msa1188390 AT5G51870.1 46.377 69 37 0 1 69 1 69 3.91e-16 73.2
Msa1188390 AT5G65070.3 45.070 71 37 1 1 69 1 71 4.03e-16 73.6
Msa1188390 AT5G10140.1 54.386 57 26 0 1 57 1 57 4.09e-16 72.8
Msa1188390 AT5G51870.2 46.377 69 37 0 1 69 1 69 4.12e-16 72.4
Msa1188390 AT3G54340.1 50.000 62 31 0 1 62 1 62 4.16e-16 73.6
Msa1188390 AT4G37940.4 46.377 69 37 0 1 69 1 69 4.94e-16 73.2
Msa1188390 AT5G51870.5 46.377 69 37 0 1 69 24 92 6.77e-16 72.4
Msa1188390 AT5G51870.4 46.377 69 37 0 1 69 1 69 7.71e-16 72.4
Msa1188390 AT4G37940.3 43.210 81 42 1 1 77 1 81 9.94e-16 71.2
Msa1188390 AT5G51870.3 46.377 69 37 0 1 69 11 79 1.20e-15 72.4
Msa1188390 AT2G22540.2 56.364 55 24 0 1 55 1 55 1.68e-15 72.0
Msa1188390 AT2G42830.2 38.298 94 53 2 1 94 16 104 1.96e-15 72.0
Msa1188390 AT2G42830.1 38.298 94 53 2 1 94 16 104 1.97e-15 72.0
Msa1188390 AT5G51860.2 46.377 69 37 0 1 69 1 69 2.11e-15 71.2
Msa1188390 AT5G51860.1 46.377 69 37 0 1 69 1 69 2.28e-15 71.2
Msa1188390 AT4G11880.2 53.448 58 27 0 1 58 1 58 2.41e-15 70.5
Msa1188390 AT4G11880.3 53.448 58 27 0 1 58 1 58 2.41e-15 70.5
Msa1188390 AT3G58780.1 38.298 94 53 2 1 94 16 104 2.49e-15 71.6
Msa1188390 AT5G65060.3 56.364 55 24 0 1 55 1 55 2.66e-15 70.5
Msa1188390 AT3G58780.5 38.298 94 53 2 1 94 22 110 2.79e-15 71.6
Msa1188390 AT5G20240.2 49.206 63 32 0 1 63 1 63 3.15e-15 69.3
Msa1188390 AT5G65050.2 54.545 55 25 0 1 55 1 55 3.27e-15 70.1
Msa1188390 AT3G58780.2 40.698 86 38 1 1 73 16 101 4.07e-15 70.9
Msa1188390 AT5G65060.1 56.364 55 24 0 1 55 1 55 4.24e-15 70.1
Msa1188390 AT1G22130.1 49.296 71 35 1 1 70 1 71 4.34e-15 72.0
Msa1188390 AT5G65060.2 56.364 55 24 0 1 55 1 55 4.60e-15 69.7
Msa1188390 AT3G58780.4 38.298 94 53 2 1 94 16 104 5.00e-15 71.2
Msa1188390 AT5G23260.2 59.649 57 23 0 1 57 1 57 5.46e-15 70.9
Msa1188390 AT5G23260.1 59.649 57 23 0 1 57 17 73 5.67e-15 70.9
Msa1188390 AT5G23260.4 59.649 57 23 0 1 57 17 73 5.69e-15 70.9
Msa1188390 AT2G14210.1 53.448 58 27 0 1 58 1 58 6.05e-15 70.5
Msa1188390 AT1G71692.1 50.000 62 31 0 1 62 1 62 6.23e-15 70.1
Msa1188390 AT5G23260.3 59.649 57 23 0 1 57 1 57 6.26e-15 70.5
Msa1188390 AT5G20240.1 49.206 63 32 0 1 63 1 63 7.08e-15 69.7
Msa1188390 AT4G11880.4 53.448 58 27 0 1 58 1 58 7.12e-15 70.1
Msa1188390 AT4G11880.1 53.448 58 27 0 1 58 1 58 7.12e-15 70.1
Msa1188390 AT5G62165.17 40.000 75 45 0 1 75 1 75 7.65e-15 68.6
Msa1188390 AT5G62165.12 40.000 75 45 0 1 75 1 75 7.65e-15 68.6
Msa1188390 AT5G62165.11 40.000 75 45 0 1 75 1 75 7.65e-15 68.6
Msa1188390 AT2G14210.2 53.448 58 27 0 1 58 1 58 8.01e-15 70.1
Msa1188390 AT5G62165.6 50.877 57 28 0 1 57 1 57 9.84e-15 68.2
Msa1188390 AT5G62165.9 50.877 57 28 0 1 57 1 57 9.84e-15 68.2
Msa1188390 AT5G62165.7 50.877 57 28 0 1 57 1 57 9.84e-15 68.2
Msa1188390 AT5G62165.8 50.877 57 28 0 1 57 1 57 9.84e-15 68.2
Msa1188390 AT5G62165.13 50.877 57 28 0 1 57 1 57 9.84e-15 68.2
Msa1188390 AT5G62165.14 40.000 75 45 0 1 75 1 75 1.07e-14 67.0
Msa1188390 AT2G03710.3 54.386 57 26 0 1 57 1 57 1.23e-14 68.6
Msa1188390 AT4G18960.1 45.588 68 37 0 2 69 18 85 1.25e-14 69.7
Msa1188390 AT1G77980.1 47.887 71 36 1 1 70 1 71 1.47e-14 70.5
Msa1188390 AT5G65050.3 54.545 55 25 0 1 55 1 55 1.51e-14 68.6
Msa1188390 AT5G65050.1 54.545 55 25 0 1 55 1 55 1.56e-14 68.6
Msa1188390 AT5G65050.5 54.545 55 25 0 1 55 1 55 1.58e-14 68.6
Msa1188390 AT5G62165.3 42.029 69 40 0 1 69 1 69 1.95e-14 68.6
Msa1188390 AT5G62165.1 42.029 69 40 0 1 69 1 69 1.95e-14 68.6
Msa1188390 AT5G62165.2 42.029 69 40 0 1 69 1 69 1.95e-14 68.6
Msa1188390 AT5G62165.10 42.029 69 40 0 1 69 1 69 2.02e-14 68.2
Msa1188390 AT5G62165.4 42.029 69 40 0 1 69 1 69 2.02e-14 68.2
Msa1188390 AT4G37435.1 30.636 173 92 6 1 147 1 171 2.13e-14 68.2
Msa1188390 AT5G65080.2 50.909 55 27 0 1 55 8 62 3.14e-14 68.2
Msa1188390 AT3G30260.1 49.123 57 29 0 1 57 1 57 3.40e-14 68.6
Msa1188390 AT3G58780.3 50.847 59 29 0 1 59 16 74 3.41e-14 68.9
Msa1188390 AT1G69120.2 43.056 72 38 1 1 72 1 69 4.16e-14 68.2
Msa1188390 AT2G03710.2 54.386 57 26 0 1 57 1 57 4.80e-14 68.2
Msa1188390 AT2G03710.1 54.386 57 26 0 1 57 1 57 5.15e-14 68.2
Msa1188390 AT1G46408.1 48.148 81 35 4 1 74 1 81 7.14e-14 67.8
Msa1188390 AT1G69120.1 43.056 72 38 1 1 72 1 69 8.12e-14 67.8
Msa1188390 AT5G15800.1 50.877 57 28 0 1 57 1 57 8.42e-14 67.4
Msa1188390 AT3G02310.2 50.877 57 28 0 1 57 1 57 9.00e-14 66.6
Msa1188390 AT1G28450.1 40.278 72 43 0 2 73 8 79 9.56e-14 66.2
Msa1188390 AT5G15800.2 50.877 57 28 0 1 57 1 57 1.39e-13 67.0
Msa1188390 AT5G60910.1 40.278 72 40 1 1 72 1 69 1.48e-13 66.6
Msa1188390 AT1G24260.2 50.877 57 28 0 1 57 1 57 1.56e-13 67.0
Msa1188390 AT1G24260.1 50.877 57 28 0 1 57 1 57 1.69e-13 66.6
Msa1188390 AT1G24260.3 50.877 57 28 0 1 57 1 57 1.71e-13 66.6
Msa1188390 AT3G02310.1 50.877 57 28 0 1 57 1 57 1.78e-13 66.6
Msa1188390 AT1G26310.1 46.552 58 31 0 1 58 1 58 1.94e-13 66.6
Msa1188390 AT1G18750.4 40.789 76 43 1 1 74 1 76 1.09e-12 65.5
Msa1188390 AT1G18750.3 40.789 76 43 1 1 74 1 76 1.14e-12 65.5
Msa1188390 AT1G18750.1 40.789 76 43 1 1 74 1 76 1.21e-12 65.5
Msa1188390 AT5G49490.1 44.444 72 36 1 3 70 46 117 1.76e-12 64.3
Msa1188390 AT1G69540.1 40.000 75 44 1 1 74 1 75 1.91e-12 64.7
Msa1188390 AT5G38620.1 43.056 72 37 1 3 70 6 77 2.31e-12 64.3
Msa1188390 AT1G69540.2 40.000 75 44 1 1 74 1 75 2.38e-12 64.3
Msa1188390 AT5G49420.1 42.857 77 39 2 3 74 8 84 2.80e-12 63.9
Msa1188390 AT5G04640.1 40.260 77 41 2 3 74 5 81 3.34e-12 63.9
Msa1188390 AT1G77950.3 38.028 71 43 1 1 70 1 71 9.50e-12 62.0
Msa1188390 AT1G77950.2 38.028 71 43 1 1 70 1 71 9.50e-12 62.0
Msa1188390 AT1G77950.1 38.028 71 43 1 1 70 1 71 9.50e-12 62.0
Msa1188390 AT1G77950.4 38.028 71 43 1 1 70 1 71 9.50e-12 62.0
Msa1188390 AT1G60920.1 33.775 151 78 7 3 146 5 140 1.10e-11 60.8
Msa1188390 AT2G26320.1 35.294 85 49 1 1 79 17 101 2.18e-11 58.2
Msa1188390 AT1G77080.11 66.667 39 13 0 1 39 1 39 3.08e-11 59.3
Msa1188390 AT2G03060.2 50.943 53 26 0 1 53 1 53 3.48e-11 61.2
Msa1188390 AT1G77080.5 66.667 39 13 0 1 39 1 39 3.50e-11 59.3
Msa1188390 AT2G03060.3 50.943 53 26 0 1 53 1 53 3.59e-11 60.8
Msa1188390 AT2G03060.7 50.943 53 26 0 1 53 1 53 3.59e-11 60.8
Msa1188390 AT2G03060.1 50.943 53 26 0 1 53 1 53 3.59e-11 60.8
Msa1188390 AT1G77080.12 66.667 39 13 0 1 39 1 39 5.71e-11 58.2
Msa1188390 AT1G77080.4 66.667 39 13 0 1 39 1 39 7.43e-11 58.9

Find 47 sgRNAs with CRISPR-Local

Find 57 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATACAACAATAGCAATTT+TGG 0.202437 8_1:-28628569 None:intergenic
GGGAATAAACCTTACTCTTT+TGG 0.260036 8_1:+28628598 Msa1188390:CDS
CCATCACCTTCTCATGTTGT+TGG 0.285658 8_1:-28628720 None:intergenic
TGTTAGAGGAAGGGGTTTCT+AGG 0.312060 8_1:-28628684 None:intergenic
AATGTGACTTGTCTCGCCTC+TGG 0.338519 8_1:-28628487 None:intergenic
ATTAATGGAGCTCAAGGATA+TGG 0.358058 8_1:+28628843 Msa1188390:CDS
GGAATGGAAAGATTCATTAA+TGG 0.365090 8_1:+28628828 Msa1188390:CDS
ATTCCTTAGGCTGGCTGAGT+AGG 0.404026 8_1:-28628810 None:intergenic
ACATTCTCAAAGCGCCGAAT+GGG 0.416565 8_1:+28628505 Msa1188390:CDS
TTCTAGGACATCGTTTAGAT+CGG 0.426926 8_1:-28628668 None:intergenic
GTTCAGATCATCTATGTTAG+AGG 0.427003 8_1:-28628698 None:intergenic
GCTATTGTTGTATTCTCTCC+CGG 0.429351 8_1:+28628577 Msa1188390:CDS
ATCATCTATGTTAGAGGAAG+GGG 0.438239 8_1:-28628692 None:intergenic
TGATATAGCTGAGGCTGAAA+AGG 0.444985 8_1:+28628744 Msa1188390:CDS
AATCTTTCCATTCCTTAGGC+TGG 0.454254 8_1:-28628819 None:intergenic
AAAAGAGTAAGGTTTATTCC+CGG 0.457419 8_1:-28628596 None:intergenic
TCTAGGACATCGTTTAGATC+GGG 0.468128 8_1:-28628667 None:intergenic
ATGTGACTTGTCTCGCCTCT+GGG 0.475748 8_1:-28628486 None:intergenic
TTCCTTAGGCTGGCTGAGTA+GGG 0.493210 8_1:-28628809 None:intergenic
CACATTCTCAAAGCGCCGAA+TGG 0.503482 8_1:+28628504 Msa1188390:CDS
CCAGGGTGGCCAAAAGAGTA+AGG 0.504633 8_1:-28628607 None:intergenic
TATGCTAAAAGAATACAAAT+CGG 0.512468 8_1:+28628786 Msa1188390:CDS
ACGAGCTTGCCATCTTGTGT+GGG 0.513990 8_1:+28628545 Msa1188390:CDS
AATGAATCTTTCCATTCCTT+AGG 0.516915 8_1:-28628823 None:intergenic
AACGAGCTTGCCATCTTGTG+TGG 0.526962 8_1:+28628544 Msa1188390:CDS
AGATTCATTAATGGAGCTCA+AGG 0.527990 8_1:+28628837 Msa1188390:CDS
CTATTGTTGTATTCTCTCCC+GGG 0.529578 8_1:+28628578 Msa1188390:CDS
TGAGGCTGAAAAGGAAGATA+AGG 0.530489 8_1:+28628753 Msa1188390:CDS
TTCTATGATGCTCCTTGCAA+AGG 0.533227 8_1:+28628900 Msa1188390:CDS
CAACCACGGGCTCCTTTGCA+AGG 0.540458 8_1:-28628912 None:intergenic
AACCAAGCCACAGAAAAGAA+AGG 0.541403 8_1:+28628943 Msa1188390:CDS
GACGCAATAGCATCAACACC+AGG 0.542737 8_1:-28628625 None:intergenic
AAAGAGTAAGGTTTATTCCC+GGG 0.547640 8_1:-28628595 None:intergenic
ACAATTAACTCATTATGGGT+CGG 0.550393 8_1:+28628434 None:intergenic
AGATCATCTATGTTAGAGGA+AGG 0.556275 8_1:-28628694 None:intergenic
GATCATCTATGTTAGAGGAA+GGG 0.557711 8_1:-28628693 None:intergenic
CTTGCAAAGGAGCCCGTGGT+TGG 0.559070 8_1:+28628913 Msa1188390:CDS
TACTCAGCCAGCCTAAGGAA+TGG 0.565385 8_1:+28628812 Msa1188390:CDS
TCTGAACCAACAACATGAGA+AGG 0.616384 8_1:+28628714 Msa1188390:CDS
AAAGGAAGATAAGGCCAATG+AGG 0.641735 8_1:+28628762 Msa1188390:CDS
GCGCAAAATTGAGATTGCGA+TGG 0.644560 8_1:+28628456 Msa1188390:CDS
CATTCTCAAAGCGCCGAATG+GGG 0.649352 8_1:+28628506 Msa1188390:CDS
GCTCCTTGCAAAGGAGCCCG+TGG 0.674787 8_1:+28628909 Msa1188390:CDS
CCAACAACATGAGAAGGTGA+TGG 0.695579 8_1:+28628720 Msa1188390:CDS
GGTGATGGCTGATATAGCTG+AGG 0.696275 8_1:+28628735 Msa1188390:CDS
ACGCAATAGCATCAACACCA+GGG 0.722765 8_1:-28628624 None:intergenic
CAATAGCATCAACACCAGGG+TGG 0.755219 8_1:-28628621 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGCTAAAAGAATACAAAT+CGG + chr8_1:28628786-28628805 Msa1188390:CDS 20.0%
!! GAATACAACAATAGCAATTT+TGG - chr8_1:28628572-28628591 None:intergenic 25.0%
!! ATATTTTCCTTTCTTTTCTG+TGG - chr8_1:28628953-28628972 None:intergenic 25.0%
!!! CTTTTTTGAATAACCCCATT+CGG - chr8_1:28628522-28628541 None:intergenic 30.0%
AAAAGAGTAAGGTTTATTCC+CGG - chr8_1:28628599-28628618 None:intergenic 30.0%
! TTCTTTTAGCATATCCTCAT+TGG - chr8_1:28628779-28628798 None:intergenic 30.0%
AATGAATCTTTCCATTCCTT+AGG - chr8_1:28628826-28628845 None:intergenic 30.0%
GGAATGGAAAGATTCATTAA+TGG + chr8_1:28628828-28628847 Msa1188390:CDS 30.0%
!! TTGGTTTTTAATTCCAACCA+CGG - chr8_1:28628929-28628948 None:intergenic 30.0%
AAAGAGTAAGGTTTATTCCC+GGG - chr8_1:28628598-28628617 None:intergenic 35.0%
! GGGAATAAACCTTACTCTTT+TGG + chr8_1:28628598-28628617 Msa1188390:CDS 35.0%
!! TTCTAGGACATCGTTTAGAT+CGG - chr8_1:28628671-28628690 None:intergenic 35.0%
ATCATCTATGTTAGAGGAAG+GGG - chr8_1:28628695-28628714 None:intergenic 35.0%
GATCATCTATGTTAGAGGAA+GGG - chr8_1:28628696-28628715 None:intergenic 35.0%
AGATCATCTATGTTAGAGGA+AGG - chr8_1:28628697-28628716 None:intergenic 35.0%
GTTCAGATCATCTATGTTAG+AGG - chr8_1:28628701-28628720 None:intergenic 35.0%
AGATTCATTAATGGAGCTCA+AGG + chr8_1:28628837-28628856 Msa1188390:CDS 35.0%
ATTAATGGAGCTCAAGGATA+TGG + chr8_1:28628843-28628862 Msa1188390:CDS 35.0%
!! TGGTTTTTAATTCCAACCAC+GGG - chr8_1:28628928-28628947 None:intergenic 35.0%
GCTATTGTTGTATTCTCTCC+CGG + chr8_1:28628577-28628596 Msa1188390:CDS 40.0%
CTATTGTTGTATTCTCTCCC+GGG + chr8_1:28628578-28628597 Msa1188390:CDS 40.0%
! TCTAGGACATCGTTTAGATC+GGG - chr8_1:28628670-28628689 None:intergenic 40.0%
TCTGAACCAACAACATGAGA+AGG + chr8_1:28628714-28628733 Msa1188390:CDS 40.0%
TGATATAGCTGAGGCTGAAA+AGG + chr8_1:28628744-28628763 Msa1188390:CDS 40.0%
TGAGGCTGAAAAGGAAGATA+AGG + chr8_1:28628753-28628772 Msa1188390:CDS 40.0%
AAAGGAAGATAAGGCCAATG+AGG + chr8_1:28628762-28628781 Msa1188390:CDS 40.0%
AATCTTTCCATTCCTTAGGC+TGG - chr8_1:28628822-28628841 None:intergenic 40.0%
TTCTATGATGCTCCTTGCAA+AGG + chr8_1:28628900-28628919 Msa1188390:CDS 40.0%
AACCAAGCCACAGAAAAGAA+AGG + chr8_1:28628943-28628962 Msa1188390:CDS 40.0%
! TTCCTTTCTTTTCTGTGGCT+TGG - chr8_1:28628948-28628967 None:intergenic 40.0%
GCGCAAAATTGAGATTGCGA+TGG + chr8_1:28628456-28628475 Msa1188390:CDS 45.0%
!! ACATTCTCAAAGCGCCGAAT+GGG + chr8_1:28628505-28628524 Msa1188390:CDS 45.0%
!! AATTTTGGCCCCACACAAGA+TGG - chr8_1:28628557-28628576 None:intergenic 45.0%
ACGCAATAGCATCAACACCA+GGG - chr8_1:28628627-28628646 None:intergenic 45.0%
TGTTAGAGGAAGGGGTTTCT+AGG - chr8_1:28628687-28628706 None:intergenic 45.0%
CCATCACCTTCTCATGTTGT+TGG - chr8_1:28628723-28628742 None:intergenic 45.0%
CCAACAACATGAGAAGGTGA+TGG + chr8_1:28628720-28628739 Msa1188390:CDS 45.0%
TGCGATGGTGAAAAACCCAG+AGG + chr8_1:28628471-28628490 Msa1188390:CDS 50.0%
! ATGTGACTTGTCTCGCCTCT+GGG - chr8_1:28628489-28628508 None:intergenic 50.0%
! AATGTGACTTGTCTCGCCTC+TGG - chr8_1:28628490-28628509 None:intergenic 50.0%
!! CACATTCTCAAAGCGCCGAA+TGG + chr8_1:28628504-28628523 Msa1188390:CDS 50.0%
!! CATTCTCAAAGCGCCGAATG+GGG + chr8_1:28628506-28628525 Msa1188390:CDS 50.0%
AACGAGCTTGCCATCTTGTG+TGG + chr8_1:28628544-28628563 Msa1188390:CDS 50.0%
ACGAGCTTGCCATCTTGTGT+GGG + chr8_1:28628545-28628564 Msa1188390:CDS 50.0%
CAATAGCATCAACACCAGGG+TGG - chr8_1:28628624-28628643 None:intergenic 50.0%
GACGCAATAGCATCAACACC+AGG - chr8_1:28628628-28628647 None:intergenic 50.0%
! GGTGATGGCTGATATAGCTG+AGG + chr8_1:28628735-28628754 Msa1188390:CDS 50.0%
! TTCCTTAGGCTGGCTGAGTA+GGG - chr8_1:28628812-28628831 None:intergenic 50.0%
! ATTCCTTAGGCTGGCTGAGT+AGG - chr8_1:28628813-28628832 None:intergenic 50.0%
TACTCAGCCAGCCTAAGGAA+TGG + chr8_1:28628812-28628831 Msa1188390:CDS 50.0%
CGAGCTTGCCATCTTGTGTG+GGG + chr8_1:28628546-28628565 Msa1188390:CDS 55.0%
CCAGGGTGGCCAAAAGAGTA+AGG - chr8_1:28628610-28628629 None:intergenic 55.0%
! CCTTACTCTTTTGGCCACCC+TGG + chr8_1:28628607-28628626 Msa1188390:CDS 55.0%
CAACCACGGGCTCCTTTGCA+AGG - chr8_1:28628915-28628934 None:intergenic 60.0%
CTTGCAAAGGAGCCCGTGGT+TGG + chr8_1:28628913-28628932 Msa1188390:CDS 60.0%
GGCCCTACTCAGCCAGCCTA+AGG + chr8_1:28628807-28628826 Msa1188390:CDS 65.0%
GCTCCTTGCAAAGGAGCCCG+TGG + chr8_1:28628909-28628928 Msa1188390:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 28628448 28628975 28628448 ID=Msa1188390;Name=Msa1188390
chr8_1 mRNA 28628448 28628975 28628448 ID=Msa1188390-mRNA-1;Parent=Msa1188390;Name=Msa1188390-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|-1|0|1|-1|1|1|0|175
chr8_1 exon 28628448 28628975 28628448 ID=Msa1188390-mRNA-1:exon:10061;Parent=Msa1188390-mRNA-1
chr8_1 CDS 28628448 28628975 28628448 ID=Msa1188390-mRNA-1:cds;Parent=Msa1188390-mRNA-1
Gene Sequence

>Msa1188390

ATGGGTCGGCGCAAAATTGAGATTGCGATGGTGAAAAACCCAGAGGCGAGACAAGTCACATTCTCAAAGCGCCGAATGGGGTTATTCAAAAAAGCAAACGAGCTTGCCATCTTGTGTGGGGCCAAAATTGCTATTGTTGTATTCTCTCCCGGGAATAAACCTTACTCTTTTGGCCACCCTGGTGTTGATGCTATTGCGTCTAAATTTCTTCAACAAGAGCCCGATCTAAACGATGTCCTAGAAACCCCTTCCTCTAACATAGATGATCTGAACCAACAACATGAGAAGGTGATGGCTGATATAGCTGAGGCTGAAAAGGAAGATAAGGCCAATGAGGATATGCTAAAAGAATACAAATCGGCCCTACTCAGCCAGCCTAAGGAATGGAAAGATTCATTAATGGAGCTCAAGGATATGGTAAAATCACGTCTTCGTGATTTAGATATATCAGATTCTATGATGCTCCTTGCAAAGGAGCCCGTGGTTGGAATTAAAAACCAAGCCACAGAAAAGAAAGGAAAATATTAA
Protein sequence

>Msa1188390

MGRRKIEIAMVKNPEARQVTFSKRRMGLFKKANELAILCGAKIAIVVFSPGNKPYSFGHPGVDAIASKFLQQEPDLNDVLETPSSNIDDLNQQHEKVMADIAEAEKEDKANEDMLKEYKSALLSQPKEWKDSLMELKDMVKSRLRDLDISDSMMLLAKEPVVGIKNQATEKKGKY*