Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1188540 | XP_013445290.2 | 86.005 | 393 | 46 | 2 | 1 | 385 | 49 | 440 | 0.0 | 695 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1188540 | sp|Q5JK20|ARFD_ORYSJ | 49.333 | 300 | 139 | 5 | 17 | 307 | 69 | 364 | 1.43e-93 | 300 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1188540 | A0A072TQ39 | 86.126 | 382 | 44 | 2 | 12 | 385 | 1 | 381 | 0.0 | 676 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1188540 | TF | B3-ARF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1188540 | MtrunA17_Chr8g0356211 | 84.713 | 314 | 39 | 2 | 80 | 385 | 1 | 313 | 0.0 | 551 |
| Msa1188540 | MtrunA17_Chr8g0385791 | 48.701 | 308 | 148 | 4 | 8 | 308 | 95 | 399 | 1.32e-92 | 295 |
| Msa1188540 | MtrunA17_Chr2g0276781 | 45.955 | 309 | 156 | 5 | 4 | 304 | 53 | 358 | 1.78e-84 | 270 |
| Msa1188540 | MtrunA17_Chr8g0346711 | 45.130 | 308 | 155 | 8 | 8 | 307 | 65 | 366 | 2.75e-78 | 254 |
| Msa1188540 | MtrunA17_Chr4g0029671 | 41.667 | 324 | 165 | 7 | 12 | 315 | 93 | 412 | 2.13e-76 | 251 |
| Msa1188540 | MtrunA17_Chr4g0046371 | 41.830 | 306 | 156 | 6 | 18 | 304 | 78 | 380 | 3.51e-75 | 246 |
| Msa1188540 | MtrunA17_Chr4g0009751 | 43.934 | 305 | 157 | 6 | 8 | 304 | 55 | 353 | 5.01e-75 | 244 |
| Msa1188540 | MtrunA17_Chr7g0239061 | 43.564 | 303 | 157 | 6 | 8 | 302 | 50 | 346 | 2.93e-74 | 243 |
| Msa1188540 | MtrunA17_Chr2g0282961 | 41.720 | 314 | 164 | 5 | 7 | 304 | 81 | 391 | 7.79e-74 | 241 |
| Msa1188540 | MtrunA17_Chr2g0326281 | 40.184 | 326 | 159 | 8 | 11 | 304 | 94 | 415 | 2.11e-71 | 238 |
| Msa1188540 | MtrunA17_Chr1g0156321 | 43.813 | 299 | 151 | 9 | 13 | 300 | 84 | 376 | 1.51e-64 | 220 |
| Msa1188540 | MtrunA17_Chr8g0376771 | 42.617 | 298 | 158 | 8 | 14 | 302 | 65 | 358 | 5.81e-64 | 219 |
| Msa1188540 | MtrunA17_Chr5g0433301 | 42.333 | 300 | 159 | 8 | 13 | 302 | 65 | 360 | 7.97e-64 | 218 |
| Msa1188540 | MtrunA17_Chr2g0285461 | 43.144 | 299 | 156 | 8 | 14 | 302 | 65 | 359 | 2.80e-63 | 218 |
| Msa1188540 | MtrunA17_Chr4g0070181 | 37.798 | 336 | 179 | 8 | 14 | 327 | 64 | 391 | 4.59e-63 | 218 |
| Msa1188540 | MtrunA17_Chr3g0109391 | 41.472 | 299 | 163 | 7 | 13 | 302 | 67 | 362 | 2.99e-62 | 214 |
| Msa1188540 | MtrunA17_Chr2g0301251 | 41.060 | 302 | 163 | 7 | 14 | 305 | 64 | 360 | 3.12e-62 | 216 |
| Msa1188540 | MtrunA17_Chr8g0389081 | 39.677 | 310 | 165 | 8 | 7 | 302 | 67 | 368 | 6.65e-59 | 206 |
| Msa1188540 | MtrunA17_Chr2g0326761 | 32.773 | 357 | 198 | 6 | 5 | 320 | 39 | 394 | 9.90e-53 | 186 |
| Msa1188540 | MtrunA17_Chr4g0028971 | 32.754 | 345 | 176 | 7 | 23 | 318 | 56 | 393 | 1.12e-50 | 180 |
| Msa1188540 | MtrunA17_Chr1g0199681 | 33.333 | 339 | 180 | 8 | 5 | 300 | 122 | 457 | 4.18e-50 | 179 |
| Msa1188540 | MtrunA17_Chr1g0181211 | 30.811 | 370 | 194 | 10 | 19 | 326 | 69 | 438 | 2.88e-47 | 171 |
| Msa1188540 | MtrunA17_Chr7g0264171 | 30.704 | 355 | 181 | 11 | 19 | 318 | 73 | 417 | 2.88e-43 | 159 |
| Msa1188540 | MtrunA17_Chr7g0264161 | 31.186 | 295 | 178 | 7 | 5 | 283 | 16 | 301 | 2.55e-38 | 139 |
| Msa1188540 | MtrunA17_Chr5g0417281 | 29.412 | 289 | 182 | 6 | 23 | 303 | 60 | 334 | 7.68e-38 | 142 |
| Msa1188540 | MtrunA17_Chr3g0115271 | 29.538 | 325 | 180 | 7 | 23 | 304 | 66 | 384 | 7.45e-37 | 140 |
| Msa1188540 | MtrunA17_Chr5g0424931 | 28.523 | 298 | 191 | 4 | 25 | 300 | 70 | 367 | 2.01e-34 | 133 |
| Msa1188540 | MtrunA17_Chr1g0178011 | 29.508 | 305 | 190 | 8 | 8 | 300 | 47 | 338 | 5.26e-32 | 125 |
| Msa1188540 | MtrunA17_Chr2g0289221 | 29.588 | 267 | 163 | 6 | 25 | 283 | 72 | 321 | 8.47e-31 | 120 |
| Msa1188540 | MtrunA17_Chr5g0436761 | 27.451 | 306 | 191 | 8 | 23 | 317 | 61 | 346 | 2.10e-29 | 118 |
| Msa1188540 | MtrunA17_Chr2g0277461 | 29.412 | 289 | 175 | 9 | 24 | 300 | 65 | 336 | 1.49e-25 | 107 |
| Msa1188540 | MtrunA17_Chr5g0417211 | 27.509 | 269 | 174 | 6 | 23 | 284 | 61 | 315 | 6.50e-25 | 105 |
| Msa1188540 | MtrunA17_Chr5g0424741 | 25.231 | 325 | 187 | 13 | 20 | 300 | 58 | 370 | 7.17e-22 | 97.1 |
| Msa1188540 | MtrunA17_Chr5g0425661 | 29.878 | 164 | 111 | 1 | 4 | 163 | 64 | 227 | 6.00e-20 | 88.2 |
| Msa1188540 | MtrunA17_Chr5g0424801 | 27.333 | 300 | 175 | 14 | 21 | 300 | 59 | 335 | 4.48e-19 | 87.8 |
| Msa1188540 | MtrunA17_Chr5g0425261 | 26.667 | 300 | 177 | 14 | 21 | 300 | 59 | 335 | 3.45e-17 | 82.4 |
| Msa1188540 | MtrunA17_Chr2g0277531 | 25.818 | 275 | 161 | 10 | 24 | 283 | 72 | 318 | 5.55e-16 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1188540 | AT5G62000.2 | 47.403 | 308 | 152 | 4 | 8 | 308 | 97 | 401 | 2.64e-94 | 300 |
| Msa1188540 | AT5G62000.5 | 47.403 | 308 | 152 | 4 | 8 | 308 | 97 | 401 | 2.64e-94 | 300 |
| Msa1188540 | AT5G62000.3 | 47.403 | 308 | 152 | 4 | 8 | 308 | 97 | 401 | 2.64e-94 | 300 |
| Msa1188540 | AT5G62000.1 | 47.403 | 308 | 152 | 4 | 8 | 308 | 97 | 401 | 2.64e-94 | 300 |
| Msa1188540 | AT5G62000.4 | 47.403 | 308 | 152 | 4 | 8 | 308 | 97 | 401 | 3.04e-94 | 300 |
| Msa1188540 | AT1G59750.4 | 43.046 | 302 | 161 | 5 | 8 | 302 | 58 | 355 | 1.31e-78 | 255 |
| Msa1188540 | AT1G59750.1 | 43.046 | 302 | 161 | 5 | 8 | 302 | 58 | 355 | 1.49e-78 | 255 |
| Msa1188540 | AT1G59750.3 | 43.046 | 302 | 161 | 5 | 8 | 302 | 58 | 355 | 1.49e-78 | 255 |
| Msa1188540 | AT1G59750.2 | 43.046 | 302 | 161 | 5 | 8 | 302 | 58 | 355 | 1.49e-78 | 254 |
| Msa1188540 | AT3G61830.2 | 43.421 | 304 | 158 | 7 | 6 | 302 | 9 | 305 | 9.29e-78 | 250 |
| Msa1188540 | AT3G61830.1 | 43.421 | 304 | 158 | 7 | 6 | 302 | 60 | 356 | 4.25e-77 | 249 |
| Msa1188540 | AT2G46530.1 | 42.475 | 299 | 160 | 6 | 11 | 303 | 61 | 353 | 1.42e-75 | 245 |
| Msa1188540 | AT2G46530.3 | 42.475 | 299 | 160 | 6 | 11 | 303 | 82 | 374 | 2.38e-75 | 245 |
| Msa1188540 | AT5G60450.2 | 42.188 | 320 | 163 | 7 | 12 | 313 | 80 | 395 | 1.09e-74 | 246 |
| Msa1188540 | AT5G60450.1 | 42.188 | 320 | 163 | 7 | 12 | 313 | 104 | 419 | 1.96e-74 | 246 |
| Msa1188540 | AT4G23980.2 | 42.951 | 305 | 159 | 8 | 6 | 302 | 47 | 344 | 7.21e-73 | 239 |
| Msa1188540 | AT4G23980.1 | 42.951 | 305 | 159 | 8 | 6 | 302 | 47 | 344 | 8.52e-73 | 239 |
| Msa1188540 | AT2G33860.1 | 38.080 | 323 | 176 | 5 | 3 | 304 | 73 | 392 | 1.95e-70 | 232 |
| Msa1188540 | AT1G19220.1 | 42.053 | 302 | 160 | 8 | 14 | 305 | 64 | 360 | 4.12e-65 | 224 |
| Msa1188540 | AT1G19850.2 | 42.484 | 306 | 158 | 10 | 7 | 300 | 78 | 377 | 1.78e-64 | 221 |
| Msa1188540 | AT1G19850.1 | 42.484 | 306 | 158 | 10 | 7 | 300 | 89 | 388 | 1.83e-64 | 221 |
| Msa1188540 | AT2G46530.2 | 43.933 | 239 | 123 | 5 | 70 | 303 | 34 | 266 | 5.98e-64 | 213 |
| Msa1188540 | AT5G37020.2 | 42.282 | 298 | 160 | 7 | 14 | 302 | 64 | 358 | 6.64e-64 | 218 |
| Msa1188540 | AT5G37020.1 | 42.282 | 298 | 160 | 7 | 14 | 302 | 64 | 358 | 1.58e-63 | 217 |
| Msa1188540 | AT5G20730.3 | 40.924 | 303 | 163 | 9 | 14 | 305 | 65 | 362 | 2.91e-62 | 216 |
| Msa1188540 | AT5G20730.2 | 40.728 | 302 | 164 | 8 | 14 | 305 | 65 | 361 | 3.73e-62 | 216 |
| Msa1188540 | AT5G20730.1 | 40.924 | 303 | 163 | 9 | 14 | 305 | 65 | 362 | 3.78e-62 | 216 |
| Msa1188540 | AT2G33860.2 | 42.616 | 237 | 128 | 3 | 73 | 304 | 2 | 235 | 6.68e-62 | 206 |
| Msa1188540 | AT1G34170.1 | 39.661 | 295 | 163 | 8 | 15 | 302 | 68 | 354 | 2.90e-60 | 203 |
| Msa1188540 | AT1G35240.1 | 38.305 | 295 | 169 | 7 | 15 | 304 | 70 | 356 | 2.19e-59 | 202 |
| Msa1188540 | AT1G34310.1 | 37.201 | 293 | 171 | 6 | 15 | 302 | 70 | 354 | 2.28e-59 | 202 |
| Msa1188540 | AT1G35540.1 | 37.884 | 293 | 169 | 6 | 15 | 302 | 70 | 354 | 2.38e-59 | 202 |
| Msa1188540 | AT1G30330.1 | 41.275 | 298 | 163 | 7 | 14 | 302 | 65 | 359 | 3.61e-59 | 206 |
| Msa1188540 | AT1G30330.3 | 41.275 | 298 | 163 | 7 | 14 | 302 | 67 | 361 | 3.61e-59 | 206 |
| Msa1188540 | AT1G30330.2 | 41.275 | 298 | 163 | 7 | 14 | 302 | 67 | 361 | 3.61e-59 | 206 |
| Msa1188540 | AT1G34410.1 | 37.543 | 293 | 170 | 7 | 15 | 302 | 70 | 354 | 3.89e-57 | 197 |
| Msa1188540 | AT5G37020.3 | 45.339 | 236 | 120 | 5 | 73 | 302 | 31 | 263 | 1.09e-55 | 194 |
| Msa1188540 | AT2G28350.2 | 33.238 | 349 | 179 | 7 | 5 | 300 | 34 | 381 | 1.81e-55 | 193 |
| Msa1188540 | AT2G28350.1 | 33.238 | 349 | 179 | 7 | 5 | 300 | 34 | 381 | 2.51e-55 | 193 |
| Msa1188540 | AT1G34390.1 | 38.225 | 293 | 166 | 8 | 15 | 302 | 70 | 352 | 3.39e-55 | 191 |
| Msa1188540 | AT1G35520.1 | 35.836 | 293 | 175 | 6 | 15 | 302 | 70 | 354 | 7.06e-55 | 190 |
| Msa1188540 | AT1G34170.2 | 38.776 | 294 | 141 | 9 | 15 | 302 | 68 | 328 | 3.52e-53 | 183 |
| Msa1188540 | AT1G34170.3 | 38.776 | 294 | 141 | 9 | 15 | 302 | 68 | 328 | 1.37e-52 | 183 |
| Msa1188540 | AT4G30080.1 | 33.233 | 331 | 179 | 9 | 12 | 300 | 53 | 383 | 1.79e-50 | 180 |
| Msa1188540 | AT1G77850.2 | 30.031 | 323 | 177 | 5 | 21 | 300 | 61 | 377 | 2.13e-42 | 156 |
| Msa1188540 | AT1G77850.1 | 30.031 | 323 | 177 | 5 | 21 | 300 | 61 | 377 | 2.45e-42 | 156 |
| Msa1188540 | AT1G43950.1 | 40.506 | 158 | 89 | 2 | 15 | 172 | 70 | 222 | 9.89e-34 | 125 |
| Msa1188540 | AT1G01030.2 | 37.500 | 96 | 59 | 1 | 67 | 162 | 50 | 144 | 3.82e-11 | 64.3 |
| Msa1188540 | AT2G36080.4 | 36.190 | 105 | 63 | 2 | 73 | 173 | 38 | 142 | 4.88e-11 | 61.6 |
| Msa1188540 | AT2G36080.2 | 36.190 | 105 | 63 | 2 | 73 | 173 | 38 | 142 | 4.88e-11 | 61.6 |
| Msa1188540 | AT1G01030.1 | 37.500 | 96 | 59 | 1 | 67 | 162 | 50 | 144 | 5.15e-11 | 63.9 |
Find 82 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCTATCTGCATGTTGTTT+TGG | 0.245289 | 8_1:-28849786 | None:intergenic |
| TGACATTATGATCACCTTCT+TGG | 0.264286 | 8_1:-28851962 | None:intergenic |
| GGACAAACCCTCTCAATATT+TGG | 0.276281 | 8_1:-28852472 | None:intergenic |
| TTAGAAGGCAAATGATAGTT+AGG | 0.299166 | 8_1:-28849069 | None:intergenic |
| ATATCCACTTTGTGATATTC+AGG | 0.303834 | 8_1:-28852739 | None:intergenic |
| CTAAAAGAGTAGATTTCATT+AGG | 0.304482 | 8_1:-28849714 | None:intergenic |
| AGGGGAGAGAATGGTGAAAT+TGG | 0.305389 | 8_1:+28851545 | Msa1188540:intron |
| GTTGTCCATGCTGTTTCTAT+TGG | 0.311077 | 8_1:+28851668 | Msa1188540:CDS |
| TGAATATCACAAAGTGGATA+TGG | 0.327346 | 8_1:+28852741 | Msa1188540:CDS |
| TCCATGGTGGATTGAGCCTT+TGG | 0.330320 | 8_1:+28852492 | Msa1188540:CDS |
| GAGAATGGTGAAATTGGTAT+TGG | 0.352900 | 8_1:+28851551 | Msa1188540:CDS |
| AGATAGATGCTTTCCCCATC+TGG | 0.359903 | 8_1:+28849800 | Msa1188540:CDS |
| TTCTGAACCAGGCCACCTAA+TGG | 0.364231 | 8_1:-28852304 | None:intergenic |
| CCATGGTGGATTGAGCCTTT+GGG | 0.374994 | 8_1:+28852493 | Msa1188540:CDS |
| AGAGCACACTTTCTTACTAA+TGG | 0.376281 | 8_1:+28851282 | Msa1188540:CDS |
| TTATTTGATAAAGGGAGAAT+TGG | 0.387439 | 8_1:-28852544 | None:intergenic |
| TAGTAAGTTGCTCACTTCAA+TGG | 0.390845 | 8_1:+28849734 | Msa1188540:CDS |
| CATCTTCTCTTAGGTGCAAT+GGG | 0.393483 | 8_1:+28852441 | Msa1188540:intron |
| AGAATGGTGAAATTGGTATT+GGG | 0.394064 | 8_1:+28851552 | Msa1188540:CDS |
| TATAGGTATGGTACAATAGT+TGG | 0.409092 | 8_1:+28852264 | Msa1188540:intron |
| AATGCCCTTCAGCATAATCT+TGG | 0.414690 | 8_1:-28852521 | None:intergenic |
| GATCTTGCATTGGTGGTTGA+AGG | 0.416950 | 8_1:-28850349 | None:intergenic |
| GAGGACAATCATGCACTTCA+TGG | 0.417435 | 8_1:+28849690 | Msa1188540:CDS |
| TATCTCACCAAGGGTGGTAT+TGG | 0.417596 | 8_1:-28851706 | None:intergenic |
| GCCACTAGATCTTGCATTGG+TGG | 0.421362 | 8_1:-28850356 | None:intergenic |
| TCTGAACCAGGCCACCTAAT+GGG | 0.429682 | 8_1:-28852303 | None:intergenic |
| CACACTTTCTTACTAATGGT+TGG | 0.440725 | 8_1:+28851286 | Msa1188540:CDS |
| CAGAGGAATCATAAATTCAA+AGG | 0.441039 | 8_1:-28851861 | None:intergenic |
| AACTGAGTAGTCTTTCTCAA+TGG | 0.461873 | 8_1:-28851900 | None:intergenic |
| ACATCTTCTCTTAGGTGCAA+TGG | 0.470200 | 8_1:+28852440 | Msa1188540:intron |
| ATTGATCCCATTAGGTGGCC+TGG | 0.478400 | 8_1:+28852297 | Msa1188540:CDS |
| AGTTGTGGGTGTTCAATTGA+AGG | 0.479455 | 8_1:+28849104 | Msa1188540:CDS |
| TGTTATTGTAGGGGAGAGAA+TGG | 0.481096 | 8_1:+28851536 | Msa1188540:intron |
| ATGAAGATATTGATCCCATT+AGG | 0.481523 | 8_1:+28852289 | Msa1188540:CDS |
| AGAGGAATCATAAATTCAAA+GGG | 0.491970 | 8_1:-28851860 | None:intergenic |
| TTATTGTTATCAGATATAGC+TGG | 0.495204 | 8_1:+28852703 | Msa1188540:intron |
| AAACATTCAACTTGGAGCAT+TGG | 0.497605 | 8_1:+28851640 | Msa1188540:CDS |
| TATTGAAATAATTATAGAAG+AGG | 0.507071 | 8_1:-28852874 | None:intergenic |
| ATGCCCTTCAGCATAATCTT+GGG | 0.510709 | 8_1:-28852520 | None:intergenic |
| TCACAAAGTGGATATGGACT+TGG | 0.522885 | 8_1:+28852747 | Msa1188540:CDS |
| TGCATGAATCTCCAGGAAGA+AGG | 0.528511 | 8_1:-28851332 | None:intergenic |
| AGGACATGCATGGAATTGAA+TGG | 0.531700 | 8_1:+28850381 | Msa1188540:CDS |
| TCCATGTCCAATACCACCCT+TGG | 0.536464 | 8_1:+28851699 | Msa1188540:CDS |
| ATCTTGCATTGGTGGTTGAA+GGG | 0.538894 | 8_1:-28850348 | None:intergenic |
| ATCTCCCAAGATTATGCTGA+AGG | 0.543976 | 8_1:+28852516 | Msa1188540:CDS |
| AAATAACTAACCTCGGGCAA+TGG | 0.548635 | 8_1:-28849252 | None:intergenic |
| GAAGGTCAACAATACAGTGC+TGG | 0.549383 | 8_1:+28852769 | Msa1188540:CDS |
| TATTGTTATCAGATATAGCT+GGG | 0.550188 | 8_1:+28852704 | Msa1188540:intron |
| TCAAGTCAAAACATTCAACT+TGG | 0.553845 | 8_1:+28851632 | Msa1188540:CDS |
| ATTGAGAAAGACTACTCAGT+TGG | 0.556162 | 8_1:+28851902 | Msa1188540:CDS |
| TAAACTAAAACAAACCAGAT+GGG | 0.562205 | 8_1:-28849814 | None:intergenic |
| TTCGCCACTAGATCTTGCAT+TGG | 0.562318 | 8_1:-28850359 | None:intergenic |
| ATACATCTCCATTCTGAACC+AGG | 0.563789 | 8_1:-28852315 | None:intergenic |
| TTCAGAATGGAGATGTATCA+AGG | 0.571681 | 8_1:+28852320 | Msa1188540:CDS |
| ATATTGAGAGGGTTTGTCCA+TGG | 0.576814 | 8_1:+28852476 | Msa1188540:CDS |
| TTTCATACCAAATATTGAGA+GGG | 0.580552 | 8_1:+28852465 | Msa1188540:CDS |
| TAAACCTGAATATCACAAAG+TGG | 0.587495 | 8_1:+28852735 | Msa1188540:CDS |
| TTAGGTGGCCTGGTTCAGAA+TGG | 0.591720 | 8_1:+28852307 | Msa1188540:CDS |
| ATTTCATACCAAATATTGAG+AGG | 0.595944 | 8_1:+28852464 | Msa1188540:CDS |
| AGACTACTCAGTTGGAAGGA+GGG | 0.596500 | 8_1:+28851910 | Msa1188540:CDS |
| ACCAAGGGTGGTATTGGACA+TGG | 0.602110 | 8_1:-28851700 | None:intergenic |
| AAGACTACTCAGTTGGAAGG+AGG | 0.602756 | 8_1:+28851909 | Msa1188540:CDS |
| TTGAGAGGGTTTGTCCATGG+TGG | 0.604041 | 8_1:+28852479 | Msa1188540:CDS |
| AGAAAGACTACTCAGTTGGA+AGG | 0.604367 | 8_1:+28851906 | Msa1188540:CDS |
| AATGCAAGATCTAGTGGCGA+AGG | 0.612003 | 8_1:+28850361 | Msa1188540:CDS |
| AACTTCCAATAGAAACAGCA+TGG | 0.614686 | 8_1:-28851673 | None:intergenic |
| ACCACCAATGCAAGATCTAG+TGG | 0.615505 | 8_1:+28850355 | Msa1188540:CDS |
| TACATTATTTCCATTGCCCG+AGG | 0.616439 | 8_1:+28849242 | Msa1188540:CDS |
| CATTGGTATCTCACCAAGGG+TGG | 0.616532 | 8_1:-28851712 | None:intergenic |
| AAGTTGAAGGATGTCCAAGA+AGG | 0.624899 | 8_1:+28851948 | Msa1188540:CDS |
| AAACTAAAACAAACCAGATG+GGG | 0.640336 | 8_1:-28849813 | None:intergenic |
| GCAACAAGAATATGCACTAG+AGG | 0.643251 | 8_1:+28849671 | Msa1188540:intron |
| TCTCCCAAGATTATGCTGAA+GGG | 0.657265 | 8_1:+28852517 | Msa1188540:CDS |
| AAGATATTGATCCCATTAGG+TGG | 0.658591 | 8_1:+28852292 | Msa1188540:CDS |
| CCCAAAGGCTCAATCCACCA+TGG | 0.661329 | 8_1:-28852493 | None:intergenic |
| ACATCAACAAAATCACAACA+TGG | 0.673109 | 8_1:+28849041 | Msa1188540:CDS |
| ATAATCTTGGGAGATCCCAA+AGG | 0.675503 | 8_1:-28852508 | None:intergenic |
| TCAATGGAAACAAGTACACA+TGG | 0.685853 | 8_1:+28849750 | Msa1188540:CDS |
| CAGATGTTGTCTGAAGTTGA+AGG | 0.687407 | 8_1:+28851935 | Msa1188540:CDS |
| AAAGTGGATATGGACTTGGA+AGG | 0.688175 | 8_1:+28852751 | Msa1188540:CDS |
| CTAGTGGCGAAGGACATGCA+TGG | 0.702589 | 8_1:+28850371 | Msa1188540:CDS |
| ATGGAAACAAGTACACATGG+TGG | 0.710626 | 8_1:+28849753 | Msa1188540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGTAAATAATATACTTATT+TGG | + | chr8_1:28849176-28849195 | Msa1188540:intron | 10.0% |
| !!! | ATATATTTTATAAAAACATG+TGG | - | chr8_1:28849412-28849431 | None:intergenic | 10.0% |
| !!! | ATATATTTTATAAAAACATG+TGG | - | chr8_1:28849412-28849431 | None:intergenic | 10.0% |
| !! | AAAAAAATTGTAATTCTATT+GGG | - | chr8_1:28849978-28849997 | None:intergenic | 10.0% |
| !!! | AAAAAATAAATGACAATTTT+TGG | - | chr8_1:28850277-28850296 | None:intergenic | 10.0% |
| !! | AAAAAAAGAAAAACAAAATA+TGG | - | chr8_1:28850841-28850860 | None:intergenic | 10.0% |
| !!! | CTTTTTTCTATATATATAAT+GGG | + | chr8_1:28850905-28850924 | Msa1188540:intron | 10.0% |
| !! | GTTATAATTAAATAACTTAA+AGG | + | chr8_1:28851056-28851075 | Msa1188540:intron | 10.0% |
| !!! | AAATAAAATAGTTGTATTTT+GGG | - | chr8_1:28851187-28851206 | None:intergenic | 10.0% |
| !! | AAAATGAATAATAATGTTAT+TGG | - | chr8_1:28851470-28851489 | None:intergenic | 10.0% |
| !!! | AATCGTTTTTATAAAAAGTA+TGG | - | chr8_1:28849360-28849379 | None:intergenic | 15.0% |
| !! | ATATACAATAACATTATCAA+AGG | - | chr8_1:28849859-28849878 | None:intergenic | 15.0% |
| !! | CAAAAAAATTGTAATTCTAT+TGG | - | chr8_1:28849979-28849998 | None:intergenic | 15.0% |
| !!! | AATTTATGATTTTTGATGTT+TGG | - | chr8_1:28850170-28850189 | None:intergenic | 15.0% |
| !! | CAAAAATCATAAATTCTATA+CGG | + | chr8_1:28850175-28850194 | Msa1188540:intron | 15.0% |
| !! | TTTGTTTCATATAAATAGAA+AGG | + | chr8_1:28850529-28850548 | Msa1188540:intron | 15.0% |
| !! | TTGTTTCATATAAATAGAAA+GGG | + | chr8_1:28850530-28850549 | Msa1188540:intron | 15.0% |
| !!! | TTTTTCTTTTTTTTCTTTTG+AGG | + | chr8_1:28850848-28850867 | Msa1188540:intron | 15.0% |
| !!! | TTTTCTTTTTTTTCTTTTGA+GGG | + | chr8_1:28850849-28850868 | Msa1188540:intron | 15.0% |
| !! | CCATTATATATATAGAAAAA+AGG | - | chr8_1:28850907-28850926 | None:intergenic | 15.0% |
| !!! | CCTTTTTTCTATATATATAA+TGG | + | chr8_1:28850904-28850923 | Msa1188540:intron | 15.0% |
| !!! | GAAATAAAATAGTTGTATTT+TGG | - | chr8_1:28851188-28851207 | None:intergenic | 15.0% |
| !! | ATAATTCTTATGTTATTGTA+GGG | + | chr8_1:28851526-28851545 | Msa1188540:intron | 15.0% |
| !! | ATTTCAAATTGTAAAATCAT+TGG | - | chr8_1:28851732-28851751 | None:intergenic | 15.0% |
| !! | GTATTTACTAAAATTCATAT+GGG | - | chr8_1:28852096-28852115 | None:intergenic | 15.0% |
| !! | TGTATTTACTAAAATTCATA+TGG | - | chr8_1:28852097-28852116 | None:intergenic | 15.0% |
| !!! | ACATTTTTGTTTTACTTTAT+AGG | + | chr8_1:28852247-28852266 | Msa1188540:intron | 15.0% |
| !! | TGTATTAAATAAAACATCAT+GGG | - | chr8_1:28852382-28852401 | None:intergenic | 15.0% |
| !! | ATGTATTAAATAAAACATCA+TGG | - | chr8_1:28852383-28852402 | None:intergenic | 15.0% |
| !!! | TATCTGTTTTATTTGATAAA+GGG | - | chr8_1:28852555-28852574 | None:intergenic | 15.0% |
| !!! | ATATCTGTTTTATTTGATAA+AGG | - | chr8_1:28852556-28852575 | None:intergenic | 15.0% |
| !!! | ACTATGCATAAAATTTTAGA+AGG | - | chr8_1:28849087-28849106 | None:intergenic | 20.0% |
| !!! | TAAAATTTTATGCATAGTTG+TGG | + | chr8_1:28849089-28849108 | Msa1188540:CDS | 20.0% |
| !!! | AAAATTTTATGCATAGTTGT+GGG | + | chr8_1:28849090-28849109 | Msa1188540:CDS | 20.0% |
| !! | ATATACTTATTTGGTATTGT+AGG | + | chr8_1:28849185-28849204 | Msa1188540:intron | 20.0% |
| !!! | AAATTTGAAATAACTAACCT+CGG | - | chr8_1:28849262-28849281 | None:intergenic | 20.0% |
| !!! | TAATGACTCAAATTTTATGT+AGG | + | chr8_1:28849431-28849450 | Msa1188540:intron | 20.0% |
| !!! | TATATAATTTGGGTTATTAC+TGG | + | chr8_1:28849639-28849658 | Msa1188540:intron | 20.0% |
| !! | TAAATTCATAAAAATATGCG+AGG | - | chr8_1:28850035-28850054 | None:intergenic | 20.0% |
| !! | TGTTTCATATAAATAGAAAG+GGG | + | chr8_1:28850531-28850550 | Msa1188540:intron | 20.0% |
| !! | AAAACTTAAAACGACTTAAT+TGG | + | chr8_1:28850627-28850646 | Msa1188540:intron | 20.0% |
| !! | AAATATGGAAAACAAAAGTT+AGG | - | chr8_1:28850826-28850845 | None:intergenic | 20.0% |
| !! | AAAGGAAAAATATGTATAAG+AGG | - | chr8_1:28850889-28850908 | None:intergenic | 20.0% |
| !! | AAAGTGCAAAAAAACTTAAA+AGG | + | chr8_1:28851025-28851044 | Msa1188540:intron | 20.0% |
| !! | TAAAGGCTAAATTATATCAA+AGG | - | chr8_1:28851083-28851102 | None:intergenic | 20.0% |
| !!! | TATTCTCTGAAGAAATTTAA+AGG | - | chr8_1:28851100-28851119 | None:intergenic | 20.0% |
| !!! | CAACTATTTTATTTCAAGAA+TGG | + | chr8_1:28851193-28851212 | Msa1188540:intron | 20.0% |
| !!! | TTTTATTTCATTGTATTCCA+TGG | + | chr8_1:28851386-28851405 | Msa1188540:intron | 20.0% |
| !! | TTTATTTCATTGTATTCCAT+GGG | + | chr8_1:28851387-28851406 | Msa1188540:intron | 20.0% |
| !! | GATAATTCTTATGTTATTGT+AGG | + | chr8_1:28851525-28851544 | Msa1188540:intron | 20.0% |
| !! | TAATTCTTATGTTATTGTAG+GGG | + | chr8_1:28851527-28851546 | Msa1188540:intron | 20.0% |
| !! | ATCATAATGTCAAATTACTA+TGG | + | chr8_1:28851973-28851992 | Msa1188540:intron | 20.0% |
| !! | ATGATACTTATAGTCTATAA+AGG | + | chr8_1:28852196-28852215 | Msa1188540:intron | 20.0% |
| !!! | TTTGTTTTACTTTATAGGTA+TGG | + | chr8_1:28852252-28852271 | Msa1188540:intron | 20.0% |
| !! | ATTTAATTACATCTTCTCTT+AGG | + | chr8_1:28852432-28852451 | Msa1188540:intron | 20.0% |
| !!! | TATACTTAACTTTTTTAACG+AGG | + | chr8_1:28852573-28852592 | Msa1188540:CDS | 20.0% |
| !!! | ATACTTAACTTTTTTAACGA+GGG | + | chr8_1:28852574-28852593 | Msa1188540:CDS | 20.0% |
| !! | AATTTGAAATAACTAACCTC+GGG | - | chr8_1:28849261-28849280 | None:intergenic | 25.0% |
| !! | GAGGTTAGTTATTTCAAATT+TGG | + | chr8_1:28849261-28849280 | Msa1188540:intron | 25.0% |
| !! | GTTAGTTATTTCAAATTTGG+CGG | + | chr8_1:28849264-28849283 | Msa1188540:intron | 25.0% |
| !!! | TAATTTTAATCTCTCTCAGT+AGG | + | chr8_1:28849379-28849398 | Msa1188540:intron | 25.0% |
| ! | CTAAAAGAGTAGATTTCATT+AGG | - | chr8_1:28849717-28849736 | None:intergenic | 25.0% |
| ! | TAAACTAAAACAAACCAGAT+GGG | - | chr8_1:28849817-28849836 | None:intergenic | 25.0% |
| ! | ATAAACTAAAACAAACCAGA+TGG | - | chr8_1:28849818-28849837 | None:intergenic | 25.0% |
| ! | TAGATAGATACATACATTCA+TGG | - | chr8_1:28850235-28850254 | None:intergenic | 25.0% |
| ! | TGTCTTTGTTACATTGTTAT+AGG | + | chr8_1:28850319-28850338 | Msa1188540:intron | 25.0% |
| !! | AATTTTCGACATATTTATCG+TGG | + | chr8_1:28850404-28850423 | Msa1188540:CDS | 25.0% |
| ! | GTTTCATATAAATAGAAAGG+GGG | + | chr8_1:28850532-28850551 | Msa1188540:intron | 25.0% |
| ! | TTAAAACGACTTAATTGGTA+TGG | + | chr8_1:28850632-28850651 | Msa1188540:intron | 25.0% |
| ! | AATTAACTTAAAGACCTAAG+TGG | + | chr8_1:28850686-28850705 | Msa1188540:intron | 25.0% |
| !!! | TTTTTTTTCTTTTGAGGGTT+CGG | + | chr8_1:28850854-28850873 | Msa1188540:intron | 25.0% |
| ! | GAAAAATATGTATAAGAGGT+GGG | - | chr8_1:28850885-28850904 | None:intergenic | 25.0% |
| ! | AGAAAAAAAACTTGGAGAAT+GGG | - | chr8_1:28851160-28851179 | None:intergenic | 25.0% |
| !! | AAATGAATTTTTGAATCCCA+TGG | - | chr8_1:28851406-28851425 | None:intergenic | 25.0% |
| ! | TTATGTCATAGAAATTTACG+TGG | + | chr8_1:28851503-28851522 | Msa1188540:intron | 25.0% |
| !! | ACTAATACACATCTTTTGTA+GGG | + | chr8_1:28851832-28851851 | Msa1188540:intron | 25.0% |
| ! | AGAGGAATCATAAATTCAAA+GGG | - | chr8_1:28851863-28851882 | None:intergenic | 25.0% |
| ! | ATTTCATACCAAATATTGAG+AGG | + | chr8_1:28852464-28852483 | Msa1188540:CDS | 25.0% |
| ! | TTTCATACCAAATATTGAGA+GGG | + | chr8_1:28852465-28852484 | Msa1188540:CDS | 25.0% |
| ! | TTATTTGATAAAGGGAGAAT+TGG | - | chr8_1:28852547-28852566 | None:intergenic | 25.0% |
| ! | TTATTGTTATCAGATATAGC+TGG | + | chr8_1:28852703-28852722 | Msa1188540:intron | 25.0% |
| ! | TATTGTTATCAGATATAGCT+GGG | + | chr8_1:28852704-28852723 | Msa1188540:intron | 25.0% |
| ACATCAACAAAATCACAACA+TGG | + | chr8_1:28849041-28849060 | Msa1188540:CDS | 30.0% | |
| TTAGAAGGCAAATGATAGTT+AGG | - | chr8_1:28849072-28849091 | None:intergenic | 30.0% | |
| AAACTAAAACAAACCAGATG+GGG | - | chr8_1:28849816-28849835 | None:intergenic | 30.0% | |
| AATACACACATACACAATGA+AGG | - | chr8_1:28849930-28849949 | None:intergenic | 30.0% | |
| GTGTATGTGTGTATTATACA+AGG | + | chr8_1:28849935-28849954 | Msa1188540:intron | 30.0% | |
| AGTCCTTGTAAAGCAAAATA+AGG | + | chr8_1:28850115-28850134 | Msa1188540:intron | 30.0% | |
| !!! | CATCCTTATTTTGCTTTACA+AGG | - | chr8_1:28850121-28850140 | None:intergenic | 30.0% |
| ACATCTTGAATTCATCTCTA+GGG | + | chr8_1:28850198-28850217 | Msa1188540:intron | 30.0% | |
| ! | GGTCAATCATAAACTCTTTT+AGG | - | chr8_1:28850478-28850497 | None:intergenic | 30.0% |
| TGCATGACAAGTAGTTATAT+AGG | - | chr8_1:28850499-28850518 | None:intergenic | 30.0% | |
| ! | TTTTAAACTCTCGTAGACAT+TGG | - | chr8_1:28850611-28850630 | None:intergenic | 30.0% |
| !!! | ATGGTTTTTTTGTACCACTT+AGG | - | chr8_1:28850703-28850722 | None:intergenic | 30.0% |
| AAGTGGTACAAAAAAACCAT+TGG | + | chr8_1:28850703-28850722 | Msa1188540:intron | 30.0% | |
| AGTGGTACAAAAAAACCATT+GGG | + | chr8_1:28850704-28850723 | Msa1188540:intron | 30.0% | |
| AAAAGTTAGGTAACCCATAA+CGG | - | chr8_1:28850813-28850832 | None:intergenic | 30.0% | |
| GGAAAAATATGTATAAGAGG+TGG | - | chr8_1:28850886-28850905 | None:intergenic | 30.0% | |
| !! | CTATATATATAATGGGTGAG+AGG | + | chr8_1:28850912-28850931 | Msa1188540:intron | 30.0% |
| GAGAAAAAAAACTTGGAGAA+TGG | - | chr8_1:28851161-28851180 | None:intergenic | 30.0% | |
| AGAATGGTGAAATTGGTATT+GGG | + | chr8_1:28851552-28851571 | Msa1188540:CDS | 30.0% | |
| !!! | TTTTGACTTGATGATAGTTG+AGG | - | chr8_1:28851623-28851642 | None:intergenic | 30.0% |
| TCAAGTCAAAACATTCAACT+TGG | + | chr8_1:28851632-28851651 | Msa1188540:CDS | 30.0% | |
| ! | CACTAATACACATCTTTTGT+AGG | + | chr8_1:28851831-28851850 | Msa1188540:intron | 30.0% |
| CAGAGGAATCATAAATTCAA+AGG | - | chr8_1:28851864-28851883 | None:intergenic | 30.0% | |
| TATAGGTATGGTACAATAGT+TGG | + | chr8_1:28852264-28852283 | Msa1188540:intron | 30.0% | |
| ATGAAGATATTGATCCCATT+AGG | + | chr8_1:28852289-28852308 | Msa1188540:CDS | 30.0% | |
| TAAACCTGAATATCACAAAG+TGG | + | chr8_1:28852735-28852754 | Msa1188540:CDS | 30.0% | |
| ATATCCACTTTGTGATATTC+AGG | - | chr8_1:28852742-28852761 | None:intergenic | 30.0% | |
| TGAATATCACAAAGTGGATA+TGG | + | chr8_1:28852741-28852760 | Msa1188540:CDS | 30.0% | |
| TAGTAAGTTGCTCACTTCAA+TGG | + | chr8_1:28849734-28849753 | Msa1188540:CDS | 35.0% | |
| TCAATGGAAACAAGTACACA+TGG | + | chr8_1:28849750-28849769 | Msa1188540:CDS | 35.0% | |
| !! | CATCTATCTGCATGTTGTTT+TGG | - | chr8_1:28849789-28849808 | None:intergenic | 35.0% |
| GACATCTTGAATTCATCTCT+AGG | + | chr8_1:28850197-28850216 | Msa1188540:intron | 35.0% | |
| !!! | TAAATAGAAAGGGGGTGTTT+TGG | + | chr8_1:28850540-28850559 | Msa1188540:intron | 35.0% |
| !!! | AAATAGAAAGGGGGTGTTTT+GGG | + | chr8_1:28850541-28850560 | Msa1188540:intron | 35.0% |
| ! | AACGTATGCCTGATTTTGTT+CGG | + | chr8_1:28850770-28850789 | Msa1188540:intron | 35.0% |
| !!! | GTTTTTTTAGGGACCGTTAT+GGG | + | chr8_1:28850797-28850816 | Msa1188540:intron | 35.0% |
| TTTCTTCTGAATCAAGAGTG+AGG | - | chr8_1:28851003-28851022 | None:intergenic | 35.0% | |
| TGGGAGAGAGAAAAAAAACT+TGG | - | chr8_1:28851168-28851187 | None:intergenic | 35.0% | |
| AGAGCACACTTTCTTACTAA+TGG | + | chr8_1:28851282-28851301 | Msa1188540:CDS | 35.0% | |
| CACACTTTCTTACTAATGGT+TGG | + | chr8_1:28851286-28851305 | Msa1188540:CDS | 35.0% | |
| ! | AACTCTAAAAACCTTCTTCC+TGG | + | chr8_1:28851321-28851340 | Msa1188540:CDS | 35.0% |
| ACAAAAATGCATGAATCTCC+AGG | - | chr8_1:28851342-28851361 | None:intergenic | 35.0% | |
| ! | GAGATTCATGCATTTTTGTC+AGG | + | chr8_1:28851343-28851362 | Msa1188540:CDS | 35.0% |
| GAGAATGGTGAAATTGGTAT+TGG | + | chr8_1:28851551-28851570 | Msa1188540:CDS | 35.0% | |
| ! | GAGGCAATTTTGTGCATATA+TGG | - | chr8_1:28851604-28851623 | None:intergenic | 35.0% |
| AAACATTCAACTTGGAGCAT+TGG | + | chr8_1:28851640-28851659 | Msa1188540:CDS | 35.0% | |
| AACTTCCAATAGAAACAGCA+TGG | - | chr8_1:28851676-28851695 | None:intergenic | 35.0% | |
| AATCATTGGTATCTCACCAA+GGG | - | chr8_1:28851718-28851737 | None:intergenic | 35.0% | |
| AAATCATTGGTATCTCACCA+AGG | - | chr8_1:28851719-28851738 | None:intergenic | 35.0% | |
| AACTGAGTAGTCTTTCTCAA+TGG | - | chr8_1:28851903-28851922 | None:intergenic | 35.0% | |
| ATTGAGAAAGACTACTCAGT+TGG | + | chr8_1:28851902-28851921 | Msa1188540:CDS | 35.0% | |
| TGACATTATGATCACCTTCT+TGG | - | chr8_1:28851965-28851984 | None:intergenic | 35.0% | |
| AAGATATTGATCCCATTAGG+TGG | + | chr8_1:28852292-28852311 | Msa1188540:CDS | 35.0% | |
| TTCAGAATGGAGATGTATCA+AGG | + | chr8_1:28852320-28852339 | Msa1188540:CDS | 35.0% | |
| AGTTGTGGGTGTTCAATTGA+AGG | + | chr8_1:28849104-28849123 | Msa1188540:CDS | 40.0% | |
| TACATTATTTCCATTGCCCG+AGG | + | chr8_1:28849242-28849261 | Msa1188540:CDS | 40.0% | |
| AAATAACTAACCTCGGGCAA+TGG | - | chr8_1:28849255-28849274 | None:intergenic | 40.0% | |
| GCAACAAGAATATGCACTAG+AGG | + | chr8_1:28849671-28849690 | Msa1188540:intron | 40.0% | |
| ATGGAAACAAGTACACATGG+TGG | + | chr8_1:28849753-28849772 | Msa1188540:CDS | 40.0% | |
| ! | ATCTTGCATTGGTGGTTGAA+GGG | - | chr8_1:28850351-28850370 | None:intergenic | 40.0% |
| AGGACATGCATGGAATTGAA+TGG | + | chr8_1:28850381-28850400 | Msa1188540:CDS | 40.0% | |
| !!! | AATAGAAAGGGGGTGTTTTG+GGG | + | chr8_1:28850542-28850561 | Msa1188540:intron | 40.0% |
| GTACAAAAAAACCATTGGGC+TGG | + | chr8_1:28850708-28850727 | Msa1188540:intron | 40.0% | |
| ATCTTCTCACTGTTCAGACA+CGG | + | chr8_1:28850738-28850757 | Msa1188540:intron | 40.0% | |
| ! | ACGTATGCCTGATTTTGTTC+GGG | + | chr8_1:28850771-28850790 | Msa1188540:intron | 40.0% |
| !!! | GGTTTTTTTAGGGACCGTTA+TGG | + | chr8_1:28850796-28850815 | Msa1188540:intron | 40.0% |
| !! | TTTCTTTTGAGGGTTCGGTT+TGG | + | chr8_1:28850859-28850878 | Msa1188540:intron | 40.0% |
| TGTTATTGTAGGGGAGAGAA+TGG | + | chr8_1:28851536-28851555 | Msa1188540:intron | 40.0% | |
| !! | GTTGTCCATGCTGTTTCTAT+TGG | + | chr8_1:28851668-28851687 | Msa1188540:CDS | 40.0% |
| ! | GACTCAGCATAAGTTTTCAG+AGG | - | chr8_1:28851881-28851900 | None:intergenic | 40.0% |
| AGAAAGACTACTCAGTTGGA+AGG | + | chr8_1:28851906-28851925 | Msa1188540:CDS | 40.0% | |
| ! | CAGATGTTGTCTGAAGTTGA+AGG | + | chr8_1:28851935-28851954 | Msa1188540:CDS | 40.0% |
| AAGTTGAAGGATGTCCAAGA+AGG | + | chr8_1:28851948-28851967 | Msa1188540:CDS | 40.0% | |
| ATACATCTCCATTCTGAACC+AGG | - | chr8_1:28852318-28852337 | None:intergenic | 40.0% | |
| ACATCTTCTCTTAGGTGCAA+TGG | + | chr8_1:28852440-28852459 | Msa1188540:intron | 40.0% | |
| CATCTTCTCTTAGGTGCAAT+GGG | + | chr8_1:28852441-28852460 | Msa1188540:intron | 40.0% | |
| GGACAAACCCTCTCAATATT+TGG | - | chr8_1:28852475-28852494 | None:intergenic | 40.0% | |
| ATATTGAGAGGGTTTGTCCA+TGG | + | chr8_1:28852476-28852495 | Msa1188540:CDS | 40.0% | |
| ATAATCTTGGGAGATCCCAA+AGG | - | chr8_1:28852511-28852530 | None:intergenic | 40.0% | |
| ATCTCCCAAGATTATGCTGA+AGG | + | chr8_1:28852516-28852535 | Msa1188540:CDS | 40.0% | |
| TCTCCCAAGATTATGCTGAA+GGG | + | chr8_1:28852517-28852536 | Msa1188540:CDS | 40.0% | |
| ATGCCCTTCAGCATAATCTT+GGG | - | chr8_1:28852523-28852542 | None:intergenic | 40.0% | |
| AATGCCCTTCAGCATAATCT+TGG | - | chr8_1:28852524-28852543 | None:intergenic | 40.0% | |
| TCACAAAGTGGATATGGACT+TGG | + | chr8_1:28852747-28852766 | Msa1188540:CDS | 40.0% | |
| AAAGTGGATATGGACTTGGA+AGG | + | chr8_1:28852751-28852770 | Msa1188540:CDS | 40.0% | |
| GAGGACAATCATGCACTTCA+TGG | + | chr8_1:28849690-28849709 | Msa1188540:CDS | 45.0% | |
| AGATAGATGCTTTCCCCATC+TGG | + | chr8_1:28849800-28849819 | Msa1188540:CDS | 45.0% | |
| ! | GATCTTGCATTGGTGGTTGA+AGG | - | chr8_1:28850352-28850371 | None:intergenic | 45.0% |
| ACCACCAATGCAAGATCTAG+TGG | + | chr8_1:28850355-28850374 | Msa1188540:CDS | 45.0% | |
| TTCGCCACTAGATCTTGCAT+TGG | - | chr8_1:28850362-28850381 | None:intergenic | 45.0% | |
| AATGCAAGATCTAGTGGCGA+AGG | + | chr8_1:28850361-28850380 | Msa1188540:CDS | 45.0% | |
| !!! | GTGTTTTGGGGTTGATGGTA+TGG | + | chr8_1:28850554-28850573 | Msa1188540:intron | 45.0% |
| !! | TTGGGGTTGATGGTATGGTT+TGG | + | chr8_1:28850559-28850578 | Msa1188540:intron | 45.0% |
| GTGTCTGAACAGTGAGAAGA+TGG | - | chr8_1:28850739-28850758 | None:intergenic | 45.0% | |
| ! | CGTATGCCTGATTTTGTTCG+GGG | + | chr8_1:28850772-28850791 | Msa1188540:intron | 45.0% |
| ! | GTATGCCTGATTTTGTTCGG+GGG | + | chr8_1:28850773-28850792 | Msa1188540:intron | 45.0% |
| ! | TATGCCTGATTTTGTTCGGG+GGG | + | chr8_1:28850774-28850793 | Msa1188540:intron | 45.0% |
| !!! | TTGTTCGGGGGGGTTTTTTT+AGG | + | chr8_1:28850785-28850804 | Msa1188540:intron | 45.0% |
| !!! | TGTTCGGGGGGGTTTTTTTA+GGG | + | chr8_1:28850786-28850805 | Msa1188540:intron | 45.0% |
| !! | ATATAATGGGTGAGAGGCAG+AGG | + | chr8_1:28850918-28850937 | Msa1188540:intron | 45.0% |
| TGCATGAATCTCCAGGAAGA+AGG | - | chr8_1:28851335-28851354 | None:intergenic | 45.0% | |
| AGGGGAGAGAATGGTGAAAT+TGG | + | chr8_1:28851545-28851564 | Msa1188540:intron | 45.0% | |
| TATCTCACCAAGGGTGGTAT+TGG | - | chr8_1:28851709-28851728 | None:intergenic | 45.0% | |
| AAGACTACTCAGTTGGAAGG+AGG | + | chr8_1:28851909-28851928 | Msa1188540:CDS | 45.0% | |
| AGACTACTCAGTTGGAAGGA+GGG | + | chr8_1:28851910-28851929 | Msa1188540:CDS | 45.0% | |
| GAAGGTCAACAATACAGTGC+TGG | + | chr8_1:28852769-28852788 | Msa1188540:CDS | 45.0% | |
| !!! | TTTTAATTTAAATAAAGTTA+TGG | - | chr8_1:28849526-28849545 | None:intergenic | 5.0% |
| !! | ATATAGATATATATATAATT+TGG | + | chr8_1:28849628-28849647 | Msa1188540:intron | 5.0% |
| !! | TATAGATATATATATAATTT+GGG | + | chr8_1:28849629-28849648 | Msa1188540:intron | 5.0% |
| GCCACTAGATCTTGCATTGG+TGG | - | chr8_1:28850359-28850378 | None:intergenic | 50.0% | |
| AGATGGTTAGACCAGCCCAA+TGG | - | chr8_1:28850722-28850741 | None:intergenic | 50.0% | |
| CTCACTGTTCAGACACGGTT+TGG | + | chr8_1:28850743-28850762 | Msa1188540:intron | 50.0% | |
| ! | ACTGTTCAGACACGGTTTGG+TGG | + | chr8_1:28850746-28850765 | Msa1188540:intron | 50.0% |
| !! | CTGTTCAGACACGGTTTGGT+GGG | + | chr8_1:28850747-28850766 | Msa1188540:intron | 50.0% |
| ! | ATGCCTGATTTTGTTCGGGG+GGG | + | chr8_1:28850775-28850794 | Msa1188540:intron | 50.0% |
| AAACCCCCCCGAACAAAATC+AGG | - | chr8_1:28850781-28850800 | None:intergenic | 50.0% | |
| ! | AGAGGATTTGAGTTCCCTGG+AGG | + | chr8_1:28850936-28850955 | Msa1188540:intron | 50.0% |
| GTTGGACATCCTGACTAGGT+CGG | - | chr8_1:28850964-28850983 | None:intergenic | 50.0% | |
| GACCTAGTCAGGATGTCCAA+CGG | + | chr8_1:28850963-28850982 | Msa1188540:intron | 50.0% | |
| GGAAGACATCAAAGAGCCGT+TGG | - | chr8_1:28850982-28851001 | None:intergenic | 50.0% | |
| TCCATGTCCAATACCACCCT+TGG | + | chr8_1:28851699-28851718 | Msa1188540:CDS | 50.0% | |
| ! | ACCAAGGGTGGTATTGGACA+TGG | - | chr8_1:28851703-28851722 | None:intergenic | 50.0% |
| CATTGGTATCTCACCAAGGG+TGG | - | chr8_1:28851715-28851734 | None:intergenic | 50.0% | |
| ATTGATCCCATTAGGTGGCC+TGG | + | chr8_1:28852297-28852316 | Msa1188540:CDS | 50.0% | |
| TCTGAACCAGGCCACCTAAT+GGG | - | chr8_1:28852306-28852325 | None:intergenic | 50.0% | |
| TTCTGAACCAGGCCACCTAA+TGG | - | chr8_1:28852307-28852326 | None:intergenic | 50.0% | |
| TTAGGTGGCCTGGTTCAGAA+TGG | + | chr8_1:28852307-28852326 | Msa1188540:CDS | 50.0% | |
| TTGAGAGGGTTTGTCCATGG+TGG | + | chr8_1:28852479-28852498 | Msa1188540:CDS | 50.0% | |
| !! | TCCATGGTGGATTGAGCCTT+TGG | + | chr8_1:28852492-28852511 | Msa1188540:CDS | 50.0% |
| !! | CCATGGTGGATTGAGCCTTT+GGG | + | chr8_1:28852493-28852512 | Msa1188540:CDS | 50.0% |
| CTAGTGGCGAAGGACATGCA+TGG | + | chr8_1:28850371-28850390 | Msa1188540:CDS | 55.0% | |
| !!! | AGGGGGTGTTTTGGGGTTGA+TGG | + | chr8_1:28850549-28850568 | Msa1188540:intron | 55.0% |
| ! | GGCAGAGGATTTGAGTTCCC+TGG | + | chr8_1:28850933-28850952 | Msa1188540:intron | 55.0% |
| AGCCGTTGGACATCCTGACT+AGG | - | chr8_1:28850968-28850987 | None:intergenic | 55.0% | |
| CCCAAAGGCTCAATCCACCA+TGG | - | chr8_1:28852496-28852515 | None:intergenic | 55.0% | |
| TGACTAGGTCGGCACCTCCA+GGG | - | chr8_1:28850953-28850972 | None:intergenic | 60.0% | |
| CTGACTAGGTCGGCACCTCC+AGG | - | chr8_1:28850954-28850973 | None:intergenic | 65.0% | |
| !! | CTGGAGGTGCCGACCTAGTC+AGG | + | chr8_1:28850952-28850971 | Msa1188540:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 28849027 | 28852885 | 28849027 | ID=Msa1188540;Name=Msa1188540 |
| chr8_1 | mRNA | 28849027 | 28852885 | 28849027 | ID=Msa1188540-mRNA-1;Parent=Msa1188540;Name=Msa1188540-mRNA-1;_AED=0.18;_eAED=0.19;_QI=0|0|0|1|1|1|10|0|385 |
| chr8_1 | exon | 28849027 | 28849125 | 28849027 | ID=Msa1188540-mRNA-1:exon:10107;Parent=Msa1188540-mRNA-1 |
| chr8_1 | exon | 28849207 | 28849263 | 28849207 | ID=Msa1188540-mRNA-1:exon:10108;Parent=Msa1188540-mRNA-1 |
| chr8_1 | exon | 28849672 | 28849821 | 28849672 | ID=Msa1188540-mRNA-1:exon:10109;Parent=Msa1188540-mRNA-1 |
| chr8_1 | exon | 28850341 | 28850425 | 28850341 | ID=Msa1188540-mRNA-1:exon:10110;Parent=Msa1188540-mRNA-1 |
| chr8_1 | exon | 28851274 | 28851364 | 28851274 | ID=Msa1188540-mRNA-1:exon:10111;Parent=Msa1188540-mRNA-1 |
| chr8_1 | exon | 28851547 | 28851720 | 28851547 | ID=Msa1188540-mRNA-1:exon:10112;Parent=Msa1188540-mRNA-1 |
| chr8_1 | exon | 28851853 | 28851969 | 28851853 | ID=Msa1188540-mRNA-1:exon:10113;Parent=Msa1188540-mRNA-1 |
| chr8_1 | exon | 28852269 | 28852341 | 28852269 | ID=Msa1188540-mRNA-1:exon:10114;Parent=Msa1188540-mRNA-1 |
| chr8_1 | exon | 28852454 | 28852595 | 28852454 | ID=Msa1188540-mRNA-1:exon:10115;Parent=Msa1188540-mRNA-1 |
| chr8_1 | exon | 28852716 | 28852885 | 28852716 | ID=Msa1188540-mRNA-1:exon:10116;Parent=Msa1188540-mRNA-1 |
| chr8_1 | CDS | 28849027 | 28849125 | 28849027 | ID=Msa1188540-mRNA-1:cds;Parent=Msa1188540-mRNA-1 |
| chr8_1 | CDS | 28849207 | 28849263 | 28849207 | ID=Msa1188540-mRNA-1:cds;Parent=Msa1188540-mRNA-1 |
| chr8_1 | CDS | 28849672 | 28849821 | 28849672 | ID=Msa1188540-mRNA-1:cds;Parent=Msa1188540-mRNA-1 |
| chr8_1 | CDS | 28850341 | 28850425 | 28850341 | ID=Msa1188540-mRNA-1:cds;Parent=Msa1188540-mRNA-1 |
| chr8_1 | CDS | 28851274 | 28851364 | 28851274 | ID=Msa1188540-mRNA-1:cds;Parent=Msa1188540-mRNA-1 |
| chr8_1 | CDS | 28851547 | 28851720 | 28851547 | ID=Msa1188540-mRNA-1:cds;Parent=Msa1188540-mRNA-1 |
| chr8_1 | CDS | 28851853 | 28851969 | 28851853 | ID=Msa1188540-mRNA-1:cds;Parent=Msa1188540-mRNA-1 |
| chr8_1 | CDS | 28852269 | 28852341 | 28852269 | ID=Msa1188540-mRNA-1:cds;Parent=Msa1188540-mRNA-1 |
| chr8_1 | CDS | 28852454 | 28852595 | 28852454 | ID=Msa1188540-mRNA-1:cds;Parent=Msa1188540-mRNA-1 |
| chr8_1 | CDS | 28852716 | 28852885 | 28852716 | ID=Msa1188540-mRNA-1:cds;Parent=Msa1188540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
