AlfalfaGEDB | Msa1189140

M. sativa cultivar zhongmu-4 / Msa1189140

KEGG: -
GO: GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF01453.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1189140	XP_013445126.2	78.207	803	135	8	1	775	2	792	0.0	1247

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1189140	sp\|Q9LW83\|CE101_ARATH	39.608	765	352	24	88	761	74	819	1.28e-145	453

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1189140	A0A396GMB1	79.271	796	129	7	1	775	1	781	0.0	1244

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1189140	MtrunA17_Chr8g0357711	79.271	796	129	7	1	775	1	781	1244
Msa1189140	MtrunA17_Chr8g0357761	79.799	797	126	7	1	775	1	784	1238
Msa1189140	MtrunA17_Chr8g0357631	76.768	792	147	6	1	775	1	772	1212
Msa1189140	MtrunA17_Chr8g0357651	76.641	792	148	8	1	774	1	773	1181
Msa1189140	MtrunA17_Chr8g0357691	65.547	804	237	11	1	781	2	788	1009
Msa1189140	MtrunA17_Chr8g0357831	79.644	506	63	3	287	775	1	483	811
Msa1189140	MtrunA17_Chr8g0358071	53.769	796	319	16	1	769	1	774	797
Msa1189140	MtrunA17_Chr8g0358031	53.074	797	326	15	1	769	1	777	783
Msa1189140	MtrunA17_Chr8g0358101	53.924	790	302	18	8	769	7	762	776
Msa1189140	MtrunA17_Chr8g0357961	52.261	796	316	17	15	769	10	782	769

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1189140	AT3G16030.6	39.193	768	361	21	88	761	85	840	8.04e-148	457
Msa1189140	AT3G16030.1	39.608	765	352	24	88	761	74	819	1.30e-146	453
Msa1189140	AT1G67520.3	38.575	744	357	18	88	763	79	790	1.95e-143	444
Msa1189140	AT1G67520.6	38.575	744	357	18	88	763	86	797	2.71e-143	444
Msa1189140	AT1G67520.4	38.420	734	329	17	88	763	79	747	2.44e-142	440
Msa1189140	AT3G16030.2	40.144	695	317	18	157	761	11	696	2.94e-141	435
Msa1189140	AT4G21380.1	39.286	756	353	23	88	758	81	815	5.75e-137	428
Msa1189140	AT4G21390.1	35.748	842	414	31	17	763	10	819	1.10e-136	427
Msa1189140	AT1G65800.1	36.985	776	392	21	67	761	57	816	6.30e-133	417
Msa1189140	AT1G65790.1	38.132	771	359	25	88	769	79	820	6.41e-131	412

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Find 158 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCACCTGTATCTAACA+AGG	0.663710	8_1:+30472928	None:intergenic
AAACGCTTTAACATAATAGA+AGG	0.429330	8_1:-30470561	Msa1189140:CDS
AAATGGACTCTATTAGAAAC+TGG	0.296765	8_1:-30472551	Msa1189140:CDS
AACCCTAAAATTTCTGATTT+TGG	0.088638	8_1:-30470441	Msa1189140:CDS
AACTGGTCATAAATGGTCAC+TGG	0.545924	8_1:-30472807	Msa1189140:CDS
AAGAAACCAGCATACTATGG+TGG	0.667087	8_1:-30469824	Msa1189140:CDS
AAGCAGAGATACCTACTTGC+AGG	0.399018	8_1:-30472439	Msa1189140:CDS
AAGCTAGGACAGGGTGGCTT+TGG	0.369436	8_1:-30471231	Msa1189140:CDS
AAGGTTGAGGTGAATCATAC+AGG	0.469939	8_1:+30472975	None:intergenic
AAGTCCGATGTGTACAGCTT+TGG	0.466518	8_1:-30470211	Msa1189140:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTGAATCATACAGGATTATT+GGG	+	chr8_1:30467966-30467985	None:intergenic	30.0%
GTACTATTGTTAAAAGGTTG+AGG	+	chr8_1:30467988-30468007	None:intergenic	30.0%
AAAATCACCTGTATCTAACA+AGG	+	chr8_1:30468022-30468041	None:intergenic	30.0%
ATCACAAAACTGGTCATAAA+TGG	-	chr8_1:30468133-30468152	Msa1189140:intron	30.0%
TATATCTGGAGAAGACTTTA+AGG	-	chr8_1:30468305-30468324	Msa1189140:intron	30.0%
TACACAACTCCAAATGAATA+CGG	-	chr8_1:30468366-30468385	Msa1189140:intron	30.0%
AGTTTCTAATAGAGTCCATT+TGG	+	chr8_1:30468397-30468416	None:intergenic	30.0%
TATGGGTATAACACTAATGA+TGG	-	chr8_1:30468468-30468487	Msa1189140:intron	30.0%
CATATAGCAAATGCTAGTTA+CGG	-	chr8_1:30468588-30468607	Msa1189140:intron	30.0%
GTAATGTTGCAATCAACTAA+AGG	-	chr8_1:30468693-30468712	Msa1189140:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	30467604	30473365	30467604	ID=Msa1189140;Name=Msa1189140
chr8_1	mRNA	30467604	30473365	30467604	ID=Msa1189140-mRNA-1;Parent=Msa1189140;Name=Msa1189140-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0\|0.62\|0.44\|0.88\|1\|1\|9\|0\|839
chr8_1	exon	30472186	30473365	30472186	ID=Msa1189140-mRNA-1:exon:10590;Parent=Msa1189140-mRNA-1
chr8_1	exon	30471505	30471639	30471505	ID=Msa1189140-mRNA-1:exon:10589;Parent=Msa1189140-mRNA-1
chr8_1	exon	30471218	30471417	30471218	ID=Msa1189140-mRNA-1:exon:10588;Parent=Msa1189140-mRNA-1
chr8_1	exon	30470903	30471113	30470903	ID=Msa1189140-mRNA-1:exon:10587;Parent=Msa1189140-mRNA-1
chr8_1	exon	30470429	30470615	30470429	ID=Msa1189140-mRNA-1:exon:10586;Parent=Msa1189140-mRNA-1
chr8_1	exon	30470129	30470279	30470129	ID=Msa1189140-mRNA-1:exon:10585;Parent=Msa1189140-mRNA-1
chr8_1	exon	30469783	30470041	30469783	ID=Msa1189140-mRNA-1:exon:10584;Parent=Msa1189140-mRNA-1
chr8_1	exon	30467880	30467973	30467880	ID=Msa1189140-mRNA-1:exon:10583;Parent=Msa1189140-mRNA-1
chr8_1	exon	30467604	30467706	30467604	ID=Msa1189140-mRNA-1:exon:10582;Parent=Msa1189140-mRNA-1
chr8_1	CDS	30472186	30473365	30472186	ID=Msa1189140-mRNA-1:cds;Parent=Msa1189140-mRNA-1
chr8_1	CDS	30471505	30471639	30471505	ID=Msa1189140-mRNA-1:cds;Parent=Msa1189140-mRNA-1
chr8_1	CDS	30471218	30471417	30471218	ID=Msa1189140-mRNA-1:cds;Parent=Msa1189140-mRNA-1
chr8_1	CDS	30470903	30471113	30470903	ID=Msa1189140-mRNA-1:cds;Parent=Msa1189140-mRNA-1
chr8_1	CDS	30470429	30470615	30470429	ID=Msa1189140-mRNA-1:cds;Parent=Msa1189140-mRNA-1
chr8_1	CDS	30470129	30470279	30470129	ID=Msa1189140-mRNA-1:cds;Parent=Msa1189140-mRNA-1
chr8_1	CDS	30469783	30470041	30469783	ID=Msa1189140-mRNA-1:cds;Parent=Msa1189140-mRNA-1
chr8_1	CDS	30467880	30467973	30467880	ID=Msa1189140-mRNA-1:cds;Parent=Msa1189140-mRNA-1
chr8_1	CDS	30467604	30467706	30467604	ID=Msa1189140-mRNA-1:cds;Parent=Msa1189140-mRNA-1

Gene Sequence

>Msa1189140

ATGGTTTGCAGTAAAAAAGGGAAACCTCAACTTTTGCTTCTCTTCACATACATTTCCTTCTGGTGGTGGTATACTAATATTTCTACCTATGTCAAAGCAGAAATTATTTATAGTATGAAGCCAGGAGATAAACTGAATGCCGGTGCCACATCCAGGTTGTGTTCTAAACAAGATAGATACTGCATGAATTTTAACCAAAATCCGGATCCTCAAAACCTCACTTATCTCTGCATATTTGGCCAAGGGGAAGATAGTTGGTTAGTATGGATTGCTAACAGAAACCAAAGTGTTGACAAAAATTCAGCAATTCTATCACTAGACTACTCTGGTGTGCTAAAAATAGAATCCAAAATTGGTGACCCAATAATCCTGTATGATTCACCTCAACCTTTTAACAATAGTACTGTTGTTGCCACCTTGTTAGATACAGGTGATTTTGTATTGCGAGATATTCAGAAGAACATTGTCTTGTGGCAAAGTTTTGATCATCCAACTGATAGTTTGCTCCCGGGAATGAAATTAGGTGTGAATCACAAAACTGGTCATAAATGGTCACTGGTTTCAAGCATCAGGGGTTCAATCCCAGCTCCTGGTCCATTCAGGCTTGACTGGGAACCCACAAGAAAAGAATTGGTCATCAAGCGTAGAGAAAAGGTTTATTGGACAAGTGGAAAACTGCTGATAAACAATACATTTGAATATATATCTGGAGAAGACTTTAAGGTCAAAGTTGTGTCTAATGAGGAAGAAGAATACTTCTCATACACAACTCCAAATGAATACGGTCTTACCAAATGGACTCTATTAGAAACTGGGCAGCTGATAAACAGAGCAGGAAGTGACATAGCAAGGGCTGATATGTGTTATGGGTATAACACTAATGATGGATGCCAAAAATGGGGTGAAGCAGAGATACCTACTTGCAGGAATGCTGATGATAAGTTCGATGGCAAGATAGGTTACCCGAATGAAAATATGGTATACCATATAGCAAATGCTAGTTACGGCATAAGTGATTGCCAAGCTAATTGCTGGAGTAACTGCAGCTGCTTTGGATTCAAAAGCTTGTATGATAATGGAACTGGTTGTGTAATGTTGCAATCAACTAAAGGTCTAAACATTGCAAGCAGTGGTGATTACTCGTTTTATATTCTAGTTAAGAACACCATCGATCACAAACAAATTAAGTTATCCAAGGGAGGTAACAATAACAGCAAGTGGATATGGATTTCCGTTGGAATGGGGACTGTTCTACTCATTATTGGTCTTTCCATTCTGTTTCGAGCCTTAAGGAAACAAAAATATGTGCTTCAAGAGAAGGAACGGATGAGAATTCAGATTGAGATTCAAGATCTTGAAGGTTCTAGGCGATACTCTGATAGCGATGATCTAGAAGGCGATTTAAGCACAAGAGATGACTTAAAAGTGTTTACCTATTCATCGATAATTATGGCTACCAATGGCTTTTCTCCTGAAAACAAGCTAGGACAGGGTGGCTTTGGACCTGTTTTTAAGGGAATTCTACCTTCAGGGCAAGAAGTAGCTGTGAAGAAACTTTCAAAAACATCTGGACAAGGAATGACTGAGTTTAGAAATGAATTAACACTTATTTGCAAGCTTCAGCATACAAATCTTGTTCAACTAATCGGTCATTGCATTCATGAACAAGAGAGAATGTTGATCTATGAATATATGTCCAACAAAAGCTTGGACTTCTTTTTATTTGATTCCACTAGAAGAAAGTTCCTAAATTGGAACAAACGCTTTAACATAATAGAAGGAATTGCTCAAGGATTACTATATCTTCACAAATACTCAAGACTCAGAATTATTCACAGAGATTTGAAGGCTAGTAATATTCTTTTAGATGAATATATGAACCCTAAAATTTCTGATTTTGGTGTGGCAAGAATTGGTTACATGTCTCCAGAGTATGCAATGGAAGGAGTTTTTTCTACAAAGTCCGATGTGTACAGCTTTGGAGTCCTGCTCCTTGAAATTATTAGTGGTGAAAAATGCAATAGCATGTACTGTGAAGACAGACCACTTAATCTAGTTGGACATGCATGGGAGCTATGGAAAGAAGGTGTGGTTCTTCAGTTGGTGGATCCATTACTAAATGAGTCTTTTTCTGAGGATGAGGTGCTAAGATGTGTTCATATAGGTTTATTATGCGTAGAAGAAAATGCCGATGATCGTCCGACAATGTCCAATGTAATATCAATGTTAACTAACAAAATTAAAGTCGATGTTTTGCCTAAGAAACCAGCATACTATGGTGGAACAAGAGTTTTTGATGAAGAAACGTATGGCGAAGAAGTTGGTAATTTTGTGTTTCAAGATATTCAGATGAAGACTTTTTTGTGGCAAAGTTTTGATCATCCAATCGATAGTTTCTTCCCTGGGATAGTTGGGAGCACAAAATTGTGTCTGAAAAAGGATGAAGAGTACTTCACATACACGAAGATCTCAAGAACAACAACATATGCATCATGGTTACTTAGGTGCAATTGTTGCTGA

Protein sequence

>Msa1189140

MVCSKKGKPQLLLLFTYISFWWWYTNISTYVKAEIIYSMKPGDKLNAGATSRLCSKQDRYCMNFNQNPDPQNLTYLCIFGQGEDSWLVWIANRNQSVDKNSAILSLDYSGVLKIESKIGDPIILYDSPQPFNNSTVVATLLDTGDFVLRDIQKNIVLWQSFDHPTDSLLPGMKLGVNHKTGHKWSLVSSIRGSIPAPGPFRLDWEPTRKELVIKRREKVYWTSGKLLINNTFEYISGEDFKVKVVSNEEEEYFSYTTPNEYGLTKWTLLETGQLINRAGSDIARADMCYGYNTNDGCQKWGEAEIPTCRNADDKFDGKIGYPNENMVYHIANASYGISDCQANCWSNCSCFGFKSLYDNGTGCVMLQSTKGLNIASSGDYSFYILVKNTIDHKQIKLSKGGNNNSKWIWISVGMGTVLLIIGLSILFRALRKQKYVLQEKERMRIQIEIQDLEGSRRYSDSDDLEGDLSTRDDLKVFTYSSIIMATNGFSPENKLGQGGFGPVFKGILPSGQEVAVKKLSKTSGQGMTEFRNELTLICKLQHTNLVQLIGHCIHEQERMLIYEYMSNKSLDFFLFDSTRRKFLNWNKRFNIIEGIAQGLLYLHKYSRLRIIHRDLKASNILLDEYMNPKISDFGVARIGYMSPEYAMEGVFSTKSDVYSFGVLLLEIISGEKCNSMYCEDRPLNLVGHAWELWKEGVVLQLVDPLLNESFSEDEVLRCVHIGLLCVEENADDRPTMSNVISMLTNKIKVDVLPKKPAYYGGTRVFDEETYGEEVGNFVFQDIQMKTFLWQSFDHPIDSFFPGIVGSTKLCLKKDEEYFTYTKISRTTTYASWLLRCNCC*