AlfalfaGEDB | Msa1189190

M. sativa cultivar zhongmu-4 / Msa1189190

KEGG: -
GO: GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF01453.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1189190	XP_013445126.2	80.697	803	110	6	1	760	1	801	0.0	1297

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1189190	sp\|O64793\|Y1675_ARATH	36.968	752	373	20	72	739	56	790	1.04e-132	416

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1189190	MtrunA17_Chr8g0357761	81.602	799	113	4	2	766	1	799	1290
Msa1189190	MtrunA17_Chr8g0357711	82.071	792	105	5	9	766	8	796	1285
Msa1189190	MtrunA17_Chr8g0357651	74.439	802	155	9	2	766	1	789	1162
Msa1189190	MtrunA17_Chr8g0357631	74.717	795	163	8	2	766	1	787	1154
Msa1189190	MtrunA17_Chr8g0357691	62.857	805	247	13	1	764	1	794	945
Msa1189190	MtrunA17_Chr8g0357831	75.639	509	80	5	285	763	1	495	753
Msa1189190	MtrunA17_Chr8g0358071	49.071	807	333	17	2	754	1	783	710
Msa1189190	MtrunA17_Chr8g0358101	50.562	801	299	20	3	745	1	762	709
Msa1189190	MtrunA17_Chr8g0357961	48.692	803	329	18	14	754	10	791	697
Msa1189190	MtrunA17_Chr8g0358031	49.686	795	331	17	2	745	1	777	694

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1189190	AT1G67520.6	37.284	751	372	20	72	739	63	797	7.99e-134	417
Msa1189190	AT1G67520.3	37.284	751	372	20	72	739	56	790	9.96e-134	416
Msa1189190	AT1G67520.4	37.332	742	341	21	72	739	56	747	3.49e-132	411
Msa1189190	AT3G16030.1	37.057	761	353	24	89	737	73	819	3.14e-128	403
Msa1189190	AT3G16030.6	36.822	774	362	24	81	737	77	840	5.99e-127	400
Msa1189190	AT4G21380.1	35.714	798	399	22	39	734	30	815	5.83e-125	394
Msa1189190	AT4G21390.1	33.776	829	433	25	31	757	19	833	3.77e-124	392
Msa1189190	AT1G65800.1	34.649	811	400	25	37	737	26	816	4.76e-123	389
Msa1189190	AT1G65790.1	35.849	795	398	23	39	734	28	809	1.33e-121	385
Msa1189190	AT1G11340.1	34.728	789	394	24	55	739	34	805	1.22e-118	377

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Find 147 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGTCACCTTGAAAAC+AGG	0.442412	8_1:+30593451	None:intergenic
AAACGAAAACAAGTGCTTCG+AGG	0.531854	8_1:-30593745	Msa1189190:intron
AAACGCTTTAACATAATAGA+AGG	0.429330	8_1:-30592849	Msa1189190:CDS
AAAGAACGTAGATATTGCAT+GGG	0.615913	8_1:-30595052	Msa1189190:CDS
AAAGTTACCTGTCTCCAACA+AGG	0.663372	8_1:+30594802	None:intergenic
AAATCTGATGTGTACAGCTT+TGG	0.419401	8_1:-30592499	Msa1189190:CDS
AAATGGACTCTATTACAAAC+TGG	0.310720	8_1:-30594425	Msa1189190:CDS
AACAGAGAAGCAGGTGAGTC+CGG	0.476456	8_1:-30594392	Msa1189190:CDS
AACCCCAAAATTTCTGATTT+TGG	0.099787	8_1:-30592729	Msa1189190:CDS
AACGGAGGGTGCCAAAAGTG+GGG	0.661175	8_1:-30594329	Msa1189190:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAGAAATAGTAGTACACCA+CGG	+	chr8_1:30591999-30592018	None:intergenic	30.0%
TAAAGAACGTAGATATTGCA+TGG	-	chr8_1:30592097-30592116	Msa1189190:CDS	30.0%
AAAGAACGTAGATATTGCAT+GGG	-	chr8_1:30592098-30592117	Msa1189190:CDS	30.0%
TTTCTATCACTAAACTACTC+TGG	-	chr8_1:30592239-30592258	Msa1189190:CDS	30.0%
TTAGGTGTGAATCATAAAAC+TGG	-	chr8_1:30592452-30592471	Msa1189190:CDS	30.0%
AAGCATTAGTGAATCAATTC+TGG	-	chr8_1:30592496-30592515	Msa1189190:CDS	30.0%
GAAAAAGTTTATTGGACAAG+TGG	-	chr8_1:30592581-30592600	Msa1189190:intron	30.0%
TACACAACACAAAATGAAGA+CGG	-	chr8_1:30592695-30592714	Msa1189190:intron	30.0%
AGTTTGTAATAGAGTCCATT+TGG	+	chr8_1:30592726-30592745	None:intergenic	30.0%
TTGTTATCAAACTTATCACC+AGG	+	chr8_1:30592875-30592894	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	30591927	30595245	30591927	ID=Msa1189190;Name=Msa1189190
chr8_1	mRNA	30591927	30595245	30591927	ID=Msa1189190-mRNA-1;Parent=Msa1189190;Name=Msa1189190-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0\|0.57\|0.5\|1\|1\|1\|8\|92\|766
chr8_1	exon	30591927	30592327	30591927	ID=Msa1189190-mRNA-1:exon:10628;Parent=Msa1189190-mRNA-1
chr8_1	exon	30592417	30592567	30592417	ID=Msa1189190-mRNA-1:exon:10627;Parent=Msa1189190-mRNA-1
chr8_1	exon	30592717	30592903	30592717	ID=Msa1189190-mRNA-1:exon:10626;Parent=Msa1189190-mRNA-1
chr8_1	exon	30593195	30593369	30593195	ID=Msa1189190-mRNA-1:exon:10625;Parent=Msa1189190-mRNA-1
chr8_1	exon	30593462	30593661	30593462	ID=Msa1189190-mRNA-1:exon:10624;Parent=Msa1189190-mRNA-1
chr8_1	exon	30593746	30593853	30593746	ID=Msa1189190-mRNA-1:exon:10623;Parent=Msa1189190-mRNA-1
chr8_1	exon	30594054	30594495	30594054	ID=Msa1189190-mRNA-1:exon:10622;Parent=Msa1189190-mRNA-1
chr8_1	exon	30594517	30595245	30594517	ID=Msa1189190-mRNA-1:exon:10621;Parent=Msa1189190-mRNA-1
chr8_1	CDS	30594517	30595245	30594517	ID=Msa1189190-mRNA-1:cds;Parent=Msa1189190-mRNA-1
chr8_1	CDS	30594054	30594495	30594054	ID=Msa1189190-mRNA-1:cds;Parent=Msa1189190-mRNA-1
chr8_1	CDS	30593746	30593853	30593746	ID=Msa1189190-mRNA-1:cds;Parent=Msa1189190-mRNA-1
chr8_1	CDS	30593462	30593661	30593462	ID=Msa1189190-mRNA-1:cds;Parent=Msa1189190-mRNA-1
chr8_1	CDS	30593195	30593369	30593195	ID=Msa1189190-mRNA-1:cds;Parent=Msa1189190-mRNA-1
chr8_1	CDS	30592717	30592903	30592717	ID=Msa1189190-mRNA-1:cds;Parent=Msa1189190-mRNA-1
chr8_1	CDS	30592417	30592567	30592417	ID=Msa1189190-mRNA-1:cds;Parent=Msa1189190-mRNA-1
chr8_1	CDS	30592019	30592327	30592019	ID=Msa1189190-mRNA-1:cds;Parent=Msa1189190-mRNA-1
chr8_1	three_prime_UTR	30591927	30592018	30591927	ID=Msa1189190-mRNA-1:three_prime_utr;Parent=Msa1189190-mRNA-1

Gene Sequence

>Msa1189190

ATGGTACTTTGTAGTGCACAAGAGAAACCTCAAGTTTTGCTTCTCTTCACTTACTTGTGCCTGTGGTGGCCGTGGTGTACTACTATTTCTATCTATGTCAATGCAGAATATATTGATAGTATGAAGCCAGGAGATACACTGAATGCTAGTGCCACATCCAATCTGTGTTCTAAAGAACGTAGATATTGCATGGGTTGGGACCTAACTCCGCAATCTGAAAACCTCACTTATCTCAGCATATATGGCCAAGGGAAAGATAATAGGTCAGTGTGGATTGCTAACAGAGATCAACCTGTTGACATTAATTCAGTATTTCTATCACTAAACTACTCTGGTGTGCTAAAAATAGAATCCAAAATCGGTGAACCAATTATCCTGTATTCTTCACGTCAACATTCTAACAATAGTAATATTGTTGCCACCTTGTTGGAGACAGGTAACTTTGAGTTGAAAGATATTGAGAAGAACACTGTGTTGTGGCAAAGTTTTGATCATCCAACCGACAGTTTGCTCCCTGGGATGAAATTAGGTGTGAATCATAAAACTGGTGAAAAATGGTCACTGGTTTCAAGCATTAGTGAATCAATTCTGGCTCCTGGTCCATTCAGGCTTGAGTGGGAAGCCACAAGAAAAGAATTGGTTATCAAGCGCAGAGAAAAAGTTTATTGGACAAGTGGAGAACTGATGAAAAACAATAGATTTAAGCATATACCTGGAGAAGATTTCGAGAAAGAAGAGTACTTCACATACACAACACAAAATGAAGACGGTCTTACCAAATGGACTCTATTACAAACTGGGCAACTGATAAACAGAGAAGCAGGTGAGTCCGGTAACATAGCAAGGGCTGATATGTGTAATGGGTATAACACTAACGGAGGGTGCCAAAAGTGGGGTGAAGCAGAGACACCTAATTGCAGGAATCCTGGTGATAAGTTTGATAACAAGCCAGTTTACGGTAATGACAATATCTTATACTATATAGAAAATGCTAGTTATGGAATAAGTGATTGCCAAGAAATGTGCTGGAGTAACTACAGCTGCTTTGGATTCAAAAGCTTGTATGATGATGGAACTGGTTGTGTCTTCTTGGTATCAATTAAAGGTCTTAACATCGCAAGCAGTGGCAGTGATTTCTTTTACATTCTGGTTAAGAACACCGATCACAAAGTATTTAACAAGTGGATATGGATTTACGCTGGAATGGGGGCTCTTATGCTAATTATCGGCCTTTCCATTCTGCTCCGAGCTTTAATGAAACGAAAACAAGTGCTTCGAGAGAAGGAAAGAATAAGAATGCAGATTGAGATTCAAGATCTTGAAGCTTCTAGACGATACTGTAATGGCGACGATCTAAAAGGAGATTTGAGCAACAACGATGACTTAAAAGTGTTTAGCTATTCATCAGTAATTGCAGCAACCAATGGCTTTTCTTCTAAAAACAAGTTAGGACAAGGTGGCTTTGGACCTGTTTTCAAGGGAATTCTTCCTTCAGGGCAAGAAGTAGCTGTGAAGAAACTTTCAAAAACTTCTGGACAAGGAATGATTGAGTTTAGAAATGAATTAACTCTCATTTGTAAGCTCCAGCATACCAATCTTGTTCAGCTAATCGGTCATTGCATTCATGAGCAAGAGAGAATGTTAATCTATGAATACTCCACTAGAAGAAAGTTGCTAGATTGGAACAAACGCTTTAACATAATAGAAGGAATTGCTCAAGGATTACTATGCCTTCACAAATACTCAAGGCTCCGAATTATCCACAGAGATTTGAAAGCTAGTAATATTCTCCTAGATCAAAATATGAACCCCAAAATTTCTGATTTTGGTGTGGCAAGAATTGGTTACATGTCTCCAGAGTATGCAATGGAAGGAGTTTTTTCTACGAAATCTGATGTGTACAGCTTTGGAGTCCTGCTCCTAGAAATTATTAGTGGCGAAAAATGCAATAGCATGTTCTGTGAAGACAGACCACTTAATCTAGTTGGACATGCATTGGAGCTATGGAAAGAAGGTGTGGTTCTTCAGTTGGTGGATCCATTACTAAATGAGTCTTTTTCTGAGGATGAGGTGCTAAGATGTGTTCATATTGGTTTATTATGTGTAGAAGAAAATGCCGATGATCGTCCGACAATGTCCAATGTTATATCAATGTTAACTAACAAAATTAAAGTGGATGTTTTGCCTAAGAAACCAGCATACTATGGTGGAACAAGAGTCTTTGATGAAGAAACGTACGACGAAGAAGTTGGTGTGGATTCCACACATGAAAACTCTTATTCACATGTACAATCATTATAG

Protein sequence

>Msa1189190

MVLCSAQEKPQVLLLFTYLCLWWPWCTTISIYVNAEYIDSMKPGDTLNASATSNLCSKERRYCMGWDLTPQSENLTYLSIYGQGKDNRSVWIANRDQPVDINSVFLSLNYSGVLKIESKIGEPIILYSSRQHSNNSNIVATLLETGNFELKDIEKNTVLWQSFDHPTDSLLPGMKLGVNHKTGEKWSLVSSISESILAPGPFRLEWEATRKELVIKRREKVYWTSGELMKNNRFKHIPGEDFEKEEYFTYTTQNEDGLTKWTLLQTGQLINREAGESGNIARADMCNGYNTNGGCQKWGEAETPNCRNPGDKFDNKPVYGNDNILYYIENASYGISDCQEMCWSNYSCFGFKSLYDDGTGCVFLVSIKGLNIASSGSDFFYILVKNTDHKVFNKWIWIYAGMGALMLIIGLSILLRALMKRKQVLREKERIRMQIEIQDLEASRRYCNGDDLKGDLSNNDDLKVFSYSSVIAATNGFSSKNKLGQGGFGPVFKGILPSGQEVAVKKLSKTSGQGMIEFRNELTLICKLQHTNLVQLIGHCIHEQERMLIYEYSTRRKLLDWNKRFNIIEGIAQGLLCLHKYSRLRIIHRDLKASNILLDQNMNPKISDFGVARIGYMSPEYAMEGVFSTKSDVYSFGVLLLEIISGEKCNSMFCEDRPLNLVGHALELWKEGVVLQLVDPLLNESFSEDEVLRCVHIGLLCVEENADDRPTMSNVISMLTNKIKVDVLPKKPAYYGGTRVFDEETYDEEVGVDSTHENSYSHVQSL*