Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1190150 | PNY11617.1 | 46.348 | 397 | 118 | 9 | 8 | 320 | 62 | 447 | 2.87e-89 | 284 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1190150 | sp|Q5KQI4|Y5814_ORYSJ | 60.952 | 105 | 41 | 0 | 19 | 123 | 113 | 217 | 3.42e-42 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1190150 | A0A2K3P8L1 | 46.348 | 397 | 118 | 9 | 8 | 320 | 62 | 447 | 1.37e-89 | 284 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1190150 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1190150 | MtrunA17_Chr2g0332121 | 49.541 | 327 | 138 | 8 | 4 | 320 | 101 | 410 | 8.05e-87 | 266 |
| Msa1190150 | MtrunA17_Chr4g0002411 | 62.500 | 120 | 45 | 0 | 10 | 129 | 45 | 164 | 1.12e-49 | 163 |
| Msa1190150 | MtrunA17_Chr4g0056751 | 76.136 | 88 | 20 | 1 | 214 | 300 | 112 | 199 | 3.68e-34 | 126 |
| Msa1190150 | MtrunA17_Chr3g0133791 | 43.333 | 120 | 66 | 1 | 19 | 138 | 108 | 225 | 2.14e-28 | 109 |
| Msa1190150 | MtrunA17_Chr8g0375001 | 47.059 | 102 | 54 | 0 | 31 | 132 | 34 | 135 | 2.00e-26 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1190150 | AT5G58280.1 | 55.556 | 117 | 52 | 0 | 7 | 123 | 89 | 205 | 3.78e-39 | 139 |
| Msa1190150 | AT5G58280.3 | 55.556 | 117 | 52 | 0 | 7 | 123 | 121 | 237 | 5.37e-39 | 140 |
| Msa1190150 | AT5G58280.2 | 55.556 | 117 | 52 | 0 | 7 | 123 | 122 | 238 | 5.44e-39 | 140 |
| Msa1190150 | AT3G19184.1 | 47.115 | 104 | 55 | 0 | 19 | 122 | 104 | 207 | 8.51e-25 | 101 |
| Msa1190150 | AT3G19184.2 | 47.115 | 104 | 55 | 0 | 19 | 122 | 104 | 207 | 9.98e-25 | 101 |
| Msa1190150 | AT5G42700.2 | 39.535 | 129 | 72 | 1 | 19 | 147 | 59 | 181 | 1.45e-24 | 98.6 |
| Msa1190150 | AT5G42700.1 | 39.535 | 129 | 72 | 1 | 19 | 147 | 104 | 226 | 1.68e-24 | 99.8 |
Find 47 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATTCATTCTTACCTTCTT+TGG | 0.170238 | 8_1:+33014522 | None:intergenic |
| TCAATTTGTTCTTCCCCTTT+TGG | 0.185000 | 8_1:+33014806 | None:intergenic |
| ATTTGCATTGGAACATAAAT+TGG | 0.189949 | 8_1:-33015275 | Msa1190150:CDS |
| CATGTGCTTGCTTCACCATC+TGG | 0.323630 | 8_1:+33014370 | None:intergenic |
| AATATTAGTAACATGGCTAT+TGG | 0.329071 | 8_1:-33015753 | None:intergenic |
| TAAAACTGAGCGGCTTCTAT+TGG | 0.338839 | 8_1:-33014482 | Msa1190150:CDS |
| CCATTCATCTTGCGCGTGTT+AGG | 0.346872 | 8_1:+33014433 | None:intergenic |
| GTTAGGATTTGTTGTATTAA+CGG | 0.386216 | 8_1:+33014450 | None:intergenic |
| TCTTCCAGGGTCTTCCTAGT+AGG | 0.396253 | 8_1:-33015417 | Msa1190150:intron |
| ACCATTGACTTGATAAATGA+TGG | 0.398569 | 8_1:+33015615 | None:intergenic |
| CTCCTGACTCTGAGTCAAAA+GGG | 0.408409 | 8_1:-33014919 | Msa1190150:CDS |
| CCTAACACGCGCAAGATGAA+TGG | 0.409983 | 8_1:-33014433 | Msa1190150:CDS |
| GAGTATGATGTTGTCTATAT+TGG | 0.436717 | 8_1:-33015331 | Msa1190150:CDS |
| GACTCAGAGTCAGGAGTAGT+AGG | 0.437919 | 8_1:+33014926 | None:intergenic |
| GTCTATATTGGCAGTAGAAG+TGG | 0.481140 | 8_1:-33015319 | Msa1190150:CDS |
| ACTCCTGACTCTGAGTCAAA+AGG | 0.483217 | 8_1:-33014920 | Msa1190150:CDS |
| AACAACAAAGAACTCGTGCT+TGG | 0.497832 | 8_1:-33015680 | Msa1190150:CDS |
| TCCATCATTTATCAAGTCAA+TGG | 0.499589 | 8_1:-33015616 | Msa1190150:CDS |
| GACTCTTTAGCTACGTTGCA+AGG | 0.503123 | 8_1:-33015731 | Msa1190150:CDS |
| TGTTCCTCACAAAACCTACT+AGG | 0.504504 | 8_1:+33015403 | None:intergenic |
| AAGTCAATGGTCCGGTCTCA+TGG | 0.512045 | 8_1:-33015603 | Msa1190150:CDS |
| GCTACTACTCCTGATCCAAA+AGG | 0.514593 | 8_1:-33014821 | Msa1190150:CDS |
| ACAAAGAACTCGTGCTTGGA+AGG | 0.515051 | 8_1:-33015676 | Msa1190150:CDS |
| CTACTACTCCTGATCCAAAA+GGG | 0.521002 | 8_1:-33014820 | Msa1190150:CDS |
| AATTGAAATTGTTGAAGCAA+AGG | 0.524896 | 8_1:-33014789 | Msa1190150:CDS |
| CTAACACGCGCAAGATGAAT+GGG | 0.527092 | 8_1:-33014432 | Msa1190150:CDS |
| GAAGTGGGCTAAGTGGTGGC+TGG | 0.540038 | 8_1:-33015303 | Msa1190150:CDS |
| GGGCTAAGTGGTGGCTGGAG+AGG | 0.544907 | 8_1:-33015298 | Msa1190150:CDS |
| CATTTATCAAGTCAATGGTC+CGG | 0.559658 | 8_1:-33015611 | Msa1190150:CDS |
| AACAGCTAAAACCATGAGAC+CGG | 0.566641 | 8_1:+33015592 | None:intergenic |
| TTTAGAGGATGAAAATGGCT+CGG | 0.571858 | 8_1:-33015353 | Msa1190150:CDS |
| TCGTGCTTGGAAGGCTGCAG+AGG | 0.573588 | 8_1:-33015667 | Msa1190150:CDS |
| TCTATATTGGCAGTAGAAGT+GGG | 0.573838 | 8_1:-33015318 | Msa1190150:CDS |
| AAGACAAGGAAGTCCAAAGA+AGG | 0.577361 | 8_1:-33014535 | Msa1190150:CDS |
| TTGGAACATAAATTGGATGA+TGG | 0.579994 | 8_1:-33015268 | Msa1190150:CDS |
| GGCAGTAGAAGTGGGCTAAG+TGG | 0.585137 | 8_1:-33015310 | Msa1190150:CDS |
| CAAAGAATTCAAACCACAGA+GGG | 0.595820 | 8_1:-33015006 | Msa1190150:CDS |
| TTAATGAAAGTTAAGCCAGA+TGG | 0.605559 | 8_1:-33014385 | Msa1190150:CDS |
| TGGCTGGAGAGGATTTGCAT+TGG | 0.612968 | 8_1:-33015287 | Msa1190150:CDS |
| TCCTGACTCTGAGTCAAAAG+GGG | 0.640773 | 8_1:-33014918 | Msa1190150:CDS |
| TACTACTCCTGATCCAAAAG+GGG | 0.651841 | 8_1:-33014819 | Msa1190150:CDS |
| TAAAATTGTCAAACAAGACA+AGG | 0.658988 | 8_1:-33014549 | Msa1190150:CDS |
| TCAGAGTCAGGAGTAGTAGG+TGG | 0.661060 | 8_1:+33014929 | None:intergenic |
| ACAAAGAATTCAAACCACAG+AGG | 0.661780 | 8_1:-33015007 | Msa1190150:CDS |
| AGTAGAAGTGGGCTAAGTGG+TGG | 0.694572 | 8_1:-33015307 | Msa1190150:CDS |
| CCACAGAGGGAAAATCCGAG+TGG | 0.708202 | 8_1:-33014993 | Msa1190150:CDS |
| ATGACTCAACTAAAACTGAG+CGG | 0.744270 | 8_1:-33014492 | Msa1190150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GACAAATAAATATAATATTT+TGG | + | chr8_1:33014611-33014630 | None:intergenic | 10.0% |
| !!! | GACAAATAAATATAATATTT+TGG | + | chr8_1:33014611-33014630 | None:intergenic | 10.0% |
| !!! | GTTCAGAATATTTTTCTATA+TGG | - | chr8_1:33014502-33014521 | Msa1190150:CDS | 20.0% |
| !! | TAAAAAGAATGTACAAAACA+TGG | + | chr8_1:33014543-33014562 | None:intergenic | 20.0% |
| !!! | GTTCAGAATATTTTTCTATA+TGG | - | chr8_1:33014502-33014521 | Msa1190150:CDS | 20.0% |
| !! | TAAAAAGAATGTACAAAACA+TGG | + | chr8_1:33014543-33014562 | None:intergenic | 20.0% |
| ! | TTATTTGTCTTTATTCTTCC+AGG | - | chr8_1:33014622-33014641 | Msa1190150:intron | 25.0% |
| ! | TATTTGTCTTTATTCTTCCA+GGG | - | chr8_1:33014623-33014642 | Msa1190150:intron | 25.0% |
| !!! | ATGATTTTAGAGGATGAAAA+TGG | - | chr8_1:33014695-33014714 | Msa1190150:intron | 25.0% |
| ! | ATTTGCATTGGAACATAAAT+TGG | - | chr8_1:33014778-33014797 | Msa1190150:CDS | 25.0% |
| !!! | TGATGCACTTGTTTTTTAAT+TGG | - | chr8_1:33014808-33014827 | Msa1190150:CDS | 25.0% |
| ! | AATTGAAATTGTTGAAGCAA+AGG | - | chr8_1:33015264-33015283 | Msa1190150:CDS | 25.0% |
| ! | TAAAATTGTCAAACAAGACA+AGG | - | chr8_1:33015504-33015523 | Msa1190150:intron | 25.0% |
| !!! | GTTAGGATTTGTTGTATTAA+CGG | + | chr8_1:33015606-33015625 | None:intergenic | 25.0% |
| ! | TTATTTGTCTTTATTCTTCC+AGG | - | chr8_1:33014622-33014641 | Msa1190150:intron | 25.0% |
| ! | TATTTGTCTTTATTCTTCCA+GGG | - | chr8_1:33014623-33014642 | Msa1190150:intron | 25.0% |
| !!! | ATGATTTTAGAGGATGAAAA+TGG | - | chr8_1:33014695-33014714 | Msa1190150:intron | 25.0% |
| ! | ATTTGCATTGGAACATAAAT+TGG | - | chr8_1:33014778-33014797 | Msa1190150:CDS | 25.0% |
| !!! | TGATGCACTTGTTTTTTAAT+TGG | - | chr8_1:33014808-33014827 | Msa1190150:CDS | 25.0% |
| ! | AATTGAAATTGTTGAAGCAA+AGG | - | chr8_1:33015264-33015283 | Msa1190150:CDS | 25.0% |
| ! | TAAAATTGTCAAACAAGACA+AGG | - | chr8_1:33015504-33015523 | Msa1190150:intron | 25.0% |
| !!! | GTTAGGATTTGTTGTATTAA+CGG | + | chr8_1:33015606-33015625 | None:intergenic | 25.0% |
| !!! | GCTTTTTCGATTTCATCTAT+TGG | + | chr8_1:33014348-33014367 | None:intergenic | 30.0% |
| TCCATCATTTATCAAGTCAA+TGG | - | chr8_1:33014437-33014456 | Msa1190150:CDS | 30.0% | |
| !! | ACCATTGACTTGATAAATGA+TGG | + | chr8_1:33014441-33014460 | None:intergenic | 30.0% |
| ! | ATCATGTTATGCACTGTTTT+TGG | + | chr8_1:33014680-33014699 | None:intergenic | 30.0% |
| ! | AGTGCATAACATGATTTTAG+AGG | - | chr8_1:33014685-33014704 | Msa1190150:intron | 30.0% |
| GAGTATGATGTTGTCTATAT+TGG | - | chr8_1:33014722-33014741 | Msa1190150:CDS | 30.0% | |
| TTGGAACATAAATTGGATGA+TGG | - | chr8_1:33014785-33014804 | Msa1190150:CDS | 30.0% | |
| !! | AAGCTTTGAAAGGACTAATT+TGG | + | chr8_1:33014912-33014931 | None:intergenic | 30.0% |
| GTTTCGCATAAATTGGAATA+AGG | + | chr8_1:33014979-33014998 | None:intergenic | 30.0% | |
| TTCCAATTTATGCGAAACTA+AGG | - | chr8_1:33014981-33015000 | Msa1190150:CDS | 30.0% | |
| TTCCTTAGTTTCGCATAAAT+TGG | + | chr8_1:33014986-33015005 | None:intergenic | 30.0% | |
| !!! | GAAGATTTAGTTTTTCCACT+CGG | + | chr8_1:33015078-33015097 | None:intergenic | 30.0% |
| ! | GTTTTCTTTATAGCTGTCTT+TGG | + | chr8_1:33015184-33015203 | None:intergenic | 30.0% |
| ACATTCATTCTTACCTTCTT+TGG | + | chr8_1:33015534-33015553 | None:intergenic | 30.0% | |
| TTAATGAAAGTTAAGCCAGA+TGG | - | chr8_1:33015668-33015687 | Msa1190150:CDS | 30.0% | |
| !!! | GCTTTTTCGATTTCATCTAT+TGG | + | chr8_1:33014348-33014367 | None:intergenic | 30.0% |
| TCCATCATTTATCAAGTCAA+TGG | - | chr8_1:33014437-33014456 | Msa1190150:CDS | 30.0% | |
| !! | ACCATTGACTTGATAAATGA+TGG | + | chr8_1:33014441-33014460 | None:intergenic | 30.0% |
| ! | ATCATGTTATGCACTGTTTT+TGG | + | chr8_1:33014680-33014699 | None:intergenic | 30.0% |
| ! | AGTGCATAACATGATTTTAG+AGG | - | chr8_1:33014685-33014704 | Msa1190150:intron | 30.0% |
| GAGTATGATGTTGTCTATAT+TGG | - | chr8_1:33014722-33014741 | Msa1190150:CDS | 30.0% | |
| TTGGAACATAAATTGGATGA+TGG | - | chr8_1:33014785-33014804 | Msa1190150:CDS | 30.0% | |
| !! | AAGCTTTGAAAGGACTAATT+TGG | + | chr8_1:33014912-33014931 | None:intergenic | 30.0% |
| GTTTCGCATAAATTGGAATA+AGG | + | chr8_1:33014979-33014998 | None:intergenic | 30.0% | |
| TTCCAATTTATGCGAAACTA+AGG | - | chr8_1:33014981-33015000 | Msa1190150:CDS | 30.0% | |
| TTCCTTAGTTTCGCATAAAT+TGG | + | chr8_1:33014986-33015005 | None:intergenic | 30.0% | |
| !!! | GAAGATTTAGTTTTTCCACT+CGG | + | chr8_1:33015078-33015097 | None:intergenic | 30.0% |
| ! | GTTTTCTTTATAGCTGTCTT+TGG | + | chr8_1:33015184-33015203 | None:intergenic | 30.0% |
| ACATTCATTCTTACCTTCTT+TGG | + | chr8_1:33015534-33015553 | None:intergenic | 30.0% | |
| TTAATGAAAGTTAAGCCAGA+TGG | - | chr8_1:33015668-33015687 | Msa1190150:CDS | 30.0% | |
| CATTTATCAAGTCAATGGTC+CGG | - | chr8_1:33014442-33014461 | Msa1190150:CDS | 35.0% | |
| !!! | CTCATGGTTTTAGCTGTTTT+TGG | - | chr8_1:33014466-33014485 | Msa1190150:CDS | 35.0% |
| !!! | TGGTTTTAGCTGTTTTTGGT+TGG | - | chr8_1:33014470-33014489 | Msa1190150:CDS | 35.0% |
| AAACATGGATAAGAATGTGC+AGG | + | chr8_1:33014528-33014547 | None:intergenic | 35.0% | |
| TTTAGAGGATGAAAATGGCT+CGG | - | chr8_1:33014700-33014719 | Msa1190150:CDS | 35.0% | |
| TCTATATTGGCAGTAGAAGT+GGG | - | chr8_1:33014735-33014754 | Msa1190150:CDS | 35.0% | |
| TATGAAGAAAGTCTGCTAGA+AGG | - | chr8_1:33015015-33015034 | Msa1190150:CDS | 35.0% | |
| ACAAAGAATTCAAACCACAG+AGG | - | chr8_1:33015046-33015065 | Msa1190150:intron | 35.0% | |
| CAAAGAATTCAAACCACAGA+GGG | - | chr8_1:33015047-33015066 | Msa1190150:intron | 35.0% | |
| !! | TCAATTTGTTCTTCCCCTTT+TGG | + | chr8_1:33015250-33015269 | None:intergenic | 35.0% |
| ! | GACAATTTTATAGCTGCCTT+TGG | + | chr8_1:33015494-33015513 | None:intergenic | 35.0% |
| ATGACTCAACTAAAACTGAG+CGG | - | chr8_1:33015561-33015580 | Msa1190150:intron | 35.0% | |
| !!! | TTATGCGCTGATTTTTTTCG+AGG | + | chr8_1:33015722-33015741 | None:intergenic | 35.0% |
| CATTTATCAAGTCAATGGTC+CGG | - | chr8_1:33014442-33014461 | Msa1190150:CDS | 35.0% | |
| !!! | CTCATGGTTTTAGCTGTTTT+TGG | - | chr8_1:33014466-33014485 | Msa1190150:CDS | 35.0% |
| !!! | TGGTTTTAGCTGTTTTTGGT+TGG | - | chr8_1:33014470-33014489 | Msa1190150:CDS | 35.0% |
| AAACATGGATAAGAATGTGC+AGG | + | chr8_1:33014528-33014547 | None:intergenic | 35.0% | |
| TTTAGAGGATGAAAATGGCT+CGG | - | chr8_1:33014700-33014719 | Msa1190150:CDS | 35.0% | |
| TCTATATTGGCAGTAGAAGT+GGG | - | chr8_1:33014735-33014754 | Msa1190150:CDS | 35.0% | |
| TATGAAGAAAGTCTGCTAGA+AGG | - | chr8_1:33015015-33015034 | Msa1190150:CDS | 35.0% | |
| ACAAAGAATTCAAACCACAG+AGG | - | chr8_1:33015046-33015065 | Msa1190150:intron | 35.0% | |
| CAAAGAATTCAAACCACAGA+GGG | - | chr8_1:33015047-33015066 | Msa1190150:intron | 35.0% | |
| !! | TCAATTTGTTCTTCCCCTTT+TGG | + | chr8_1:33015250-33015269 | None:intergenic | 35.0% |
| ! | GACAATTTTATAGCTGCCTT+TGG | + | chr8_1:33015494-33015513 | None:intergenic | 35.0% |
| ATGACTCAACTAAAACTGAG+CGG | - | chr8_1:33015561-33015580 | Msa1190150:intron | 35.0% | |
| !!! | TTATGCGCTGATTTTTTTCG+AGG | + | chr8_1:33015722-33015741 | None:intergenic | 35.0% |
| AACAACAAAGAACTCGTGCT+TGG | - | chr8_1:33014373-33014392 | Msa1190150:CDS | 40.0% | |
| AACAGCTAAAACCATGAGAC+CGG | + | chr8_1:33014464-33014483 | None:intergenic | 40.0% | |
| !! | TCTTCCTAGTAGGTTTTGTG+AGG | - | chr8_1:33014646-33014665 | Msa1190150:intron | 40.0% |
| TGTTCCTCACAAAACCTACT+AGG | + | chr8_1:33014653-33014672 | None:intergenic | 40.0% | |
| GTCTATATTGGCAGTAGAAG+TGG | - | chr8_1:33014734-33014753 | Msa1190150:CDS | 40.0% | |
| ! | CAACTCTCGTTTAACTTCGA+AGG | - | chr8_1:33014876-33014895 | Msa1190150:CDS | 40.0% |
| !! | AGGAACGCTTAAGCTTTGAA+AGG | + | chr8_1:33014922-33014941 | None:intergenic | 40.0% |
| AAAAGCTAGCTCAAGAGGTA+AGG | + | chr8_1:33014942-33014961 | None:intergenic | 40.0% | |
| !!! | TTACCTCTTGAGCTAGCTTT+TGG | - | chr8_1:33014941-33014960 | Msa1190150:CDS | 40.0% |
| CTACTACTCCTGATCCAAAA+GGG | - | chr8_1:33015233-33015252 | Msa1190150:intron | 40.0% | |
| TACTACTCCTGATCCAAAAG+GGG | - | chr8_1:33015234-33015253 | Msa1190150:intron | 40.0% | |
| AAGACAAGGAAGTCCAAAGA+AGG | - | chr8_1:33015518-33015537 | Msa1190150:intron | 40.0% | |
| TAAAACTGAGCGGCTTCTAT+TGG | - | chr8_1:33015571-33015590 | Msa1190150:intron | 40.0% | |
| AACAACAAAGAACTCGTGCT+TGG | - | chr8_1:33014373-33014392 | Msa1190150:CDS | 40.0% | |
| AACAGCTAAAACCATGAGAC+CGG | + | chr8_1:33014464-33014483 | None:intergenic | 40.0% | |
| !! | TCTTCCTAGTAGGTTTTGTG+AGG | - | chr8_1:33014646-33014665 | Msa1190150:intron | 40.0% |
| TGTTCCTCACAAAACCTACT+AGG | + | chr8_1:33014653-33014672 | None:intergenic | 40.0% | |
| GTCTATATTGGCAGTAGAAG+TGG | - | chr8_1:33014734-33014753 | Msa1190150:CDS | 40.0% | |
| ! | CAACTCTCGTTTAACTTCGA+AGG | - | chr8_1:33014876-33014895 | Msa1190150:CDS | 40.0% |
| !! | AGGAACGCTTAAGCTTTGAA+AGG | + | chr8_1:33014922-33014941 | None:intergenic | 40.0% |
| AAAAGCTAGCTCAAGAGGTA+AGG | + | chr8_1:33014942-33014961 | None:intergenic | 40.0% | |
| !!! | TTACCTCTTGAGCTAGCTTT+TGG | - | chr8_1:33014941-33014960 | Msa1190150:CDS | 40.0% |
| CTACTACTCCTGATCCAAAA+GGG | - | chr8_1:33015233-33015252 | Msa1190150:intron | 40.0% | |
| TACTACTCCTGATCCAAAAG+GGG | - | chr8_1:33015234-33015253 | Msa1190150:intron | 40.0% | |
| AAGACAAGGAAGTCCAAAGA+AGG | - | chr8_1:33015518-33015537 | Msa1190150:intron | 40.0% | |
| TAAAACTGAGCGGCTTCTAT+TGG | - | chr8_1:33015571-33015590 | Msa1190150:intron | 40.0% | |
| GACTCTTTAGCTACGTTGCA+AGG | - | chr8_1:33014322-33014341 | Msa1190150:CDS | 45.0% | |
| ACAAAGAACTCGTGCTTGGA+AGG | - | chr8_1:33014377-33014396 | Msa1190150:CDS | 45.0% | |
| AAAACCTACTAGGAAGACCC+TGG | + | chr8_1:33014643-33014662 | None:intergenic | 45.0% | |
| GGTTGAAGCGACGAGATTTA+AGG | - | chr8_1:33014829-33014848 | Msa1190150:CDS | 45.0% | |
| ACTCCTGACTCTGAGTCAAA+AGG | - | chr8_1:33015133-33015152 | Msa1190150:intron | 45.0% | |
| CTCCTGACTCTGAGTCAAAA+GGG | - | chr8_1:33015134-33015153 | Msa1190150:intron | 45.0% | |
| TCCTGACTCTGAGTCAAAAG+GGG | - | chr8_1:33015135-33015154 | Msa1190150:intron | 45.0% | |
| GCTACTACTCCTGATCCAAA+AGG | - | chr8_1:33015232-33015251 | Msa1190150:intron | 45.0% | |
| ! | TGTTCTTCCCCTTTTGGATC+AGG | + | chr8_1:33015244-33015263 | None:intergenic | 45.0% |
| CTAACACGCGCAAGATGAAT+GGG | - | chr8_1:33015621-33015640 | Msa1190150:CDS | 45.0% | |
| GACTCTTTAGCTACGTTGCA+AGG | - | chr8_1:33014322-33014341 | Msa1190150:CDS | 45.0% | |
| ACAAAGAACTCGTGCTTGGA+AGG | - | chr8_1:33014377-33014396 | Msa1190150:CDS | 45.0% | |
| AAAACCTACTAGGAAGACCC+TGG | + | chr8_1:33014643-33014662 | None:intergenic | 45.0% | |
| GGTTGAAGCGACGAGATTTA+AGG | - | chr8_1:33014829-33014848 | Msa1190150:CDS | 45.0% | |
| ACTCCTGACTCTGAGTCAAA+AGG | - | chr8_1:33015133-33015152 | Msa1190150:intron | 45.0% | |
| CTCCTGACTCTGAGTCAAAA+GGG | - | chr8_1:33015134-33015153 | Msa1190150:intron | 45.0% | |
| TCCTGACTCTGAGTCAAAAG+GGG | - | chr8_1:33015135-33015154 | Msa1190150:intron | 45.0% | |
| GCTACTACTCCTGATCCAAA+AGG | - | chr8_1:33015232-33015251 | Msa1190150:intron | 45.0% | |
| ! | TGTTCTTCCCCTTTTGGATC+AGG | + | chr8_1:33015244-33015263 | None:intergenic | 45.0% |
| CTAACACGCGCAAGATGAAT+GGG | - | chr8_1:33015621-33015640 | Msa1190150:CDS | 45.0% | |
| AAGTCAATGGTCCGGTCTCA+TGG | - | chr8_1:33014450-33014469 | Msa1190150:CDS | 50.0% | |
| TCTTCCAGGGTCTTCCTAGT+AGG | - | chr8_1:33014636-33014655 | Msa1190150:intron | 50.0% | |
| !! | AGTAGAAGTGGGCTAAGTGG+TGG | - | chr8_1:33014746-33014765 | Msa1190150:CDS | 50.0% |
| TGGCTGGAGAGGATTTGCAT+TGG | - | chr8_1:33014766-33014785 | Msa1190150:CDS | 50.0% | |
| ACGCCAAAAGCTAGCTCAAG+AGG | + | chr8_1:33014947-33014966 | None:intergenic | 50.0% | |
| TCAGAGTCAGGAGTAGTAGG+TGG | + | chr8_1:33015127-33015146 | None:intergenic | 50.0% | |
| GACTCAGAGTCAGGAGTAGT+AGG | + | chr8_1:33015130-33015149 | None:intergenic | 50.0% | |
| !! | TCCCCTTTTGACTCAGAGTC+AGG | + | chr8_1:33015139-33015158 | None:intergenic | 50.0% |
| CCATTCATCTTGCGCGTGTT+AGG | + | chr8_1:33015623-33015642 | None:intergenic | 50.0% | |
| CCTAACACGCGCAAGATGAA+TGG | - | chr8_1:33015620-33015639 | Msa1190150:CDS | 50.0% | |
| CATGTGCTTGCTTCACCATC+TGG | + | chr8_1:33015686-33015705 | None:intergenic | 50.0% | |
| AAGTCAATGGTCCGGTCTCA+TGG | - | chr8_1:33014450-33014469 | Msa1190150:CDS | 50.0% | |
| TCTTCCAGGGTCTTCCTAGT+AGG | - | chr8_1:33014636-33014655 | Msa1190150:intron | 50.0% | |
| !! | AGTAGAAGTGGGCTAAGTGG+TGG | - | chr8_1:33014746-33014765 | Msa1190150:CDS | 50.0% |
| TGGCTGGAGAGGATTTGCAT+TGG | - | chr8_1:33014766-33014785 | Msa1190150:CDS | 50.0% | |
| ACGCCAAAAGCTAGCTCAAG+AGG | + | chr8_1:33014947-33014966 | None:intergenic | 50.0% | |
| TCAGAGTCAGGAGTAGTAGG+TGG | + | chr8_1:33015127-33015146 | None:intergenic | 50.0% | |
| GACTCAGAGTCAGGAGTAGT+AGG | + | chr8_1:33015130-33015149 | None:intergenic | 50.0% | |
| !! | TCCCCTTTTGACTCAGAGTC+AGG | + | chr8_1:33015139-33015158 | None:intergenic | 50.0% |
| CCATTCATCTTGCGCGTGTT+AGG | + | chr8_1:33015623-33015642 | None:intergenic | 50.0% | |
| CCTAACACGCGCAAGATGAA+TGG | - | chr8_1:33015620-33015639 | Msa1190150:CDS | 50.0% | |
| CATGTGCTTGCTTCACCATC+TGG | + | chr8_1:33015686-33015705 | None:intergenic | 50.0% | |
| !! | GGCAGTAGAAGTGGGCTAAG+TGG | - | chr8_1:33014743-33014762 | Msa1190150:CDS | 55.0% |
| ! | CCACTCGGATTTTCCCTCTG+TGG | + | chr8_1:33015063-33015082 | None:intergenic | 55.0% |
| CCACAGAGGGAAAATCCGAG+TGG | - | chr8_1:33015060-33015079 | Msa1190150:intron | 55.0% | |
| !! | GGCAGTAGAAGTGGGCTAAG+TGG | - | chr8_1:33014743-33014762 | Msa1190150:CDS | 55.0% |
| ! | CCACTCGGATTTTCCCTCTG+TGG | + | chr8_1:33015063-33015082 | None:intergenic | 55.0% |
| CCACAGAGGGAAAATCCGAG+TGG | - | chr8_1:33015060-33015079 | Msa1190150:intron | 55.0% | |
| TCGTGCTTGGAAGGCTGCAG+AGG | - | chr8_1:33014386-33014405 | Msa1190150:CDS | 60.0% | |
| !! | GAAGTGGGCTAAGTGGTGGC+TGG | - | chr8_1:33014750-33014769 | Msa1190150:CDS | 60.0% |
| TCGTGCTTGGAAGGCTGCAG+AGG | - | chr8_1:33014386-33014405 | Msa1190150:CDS | 60.0% | |
| !! | GAAGTGGGCTAAGTGGTGGC+TGG | - | chr8_1:33014750-33014769 | Msa1190150:CDS | 60.0% |
| GGGCTAAGTGGTGGCTGGAG+AGG | - | chr8_1:33014755-33014774 | Msa1190150:CDS | 65.0% | |
| GGGCTAAGTGGTGGCTGGAG+AGG | - | chr8_1:33014755-33014774 | Msa1190150:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 33014312 | 33015763 | 33014312 | ID=Msa1190150;Name=Msa1190150 |
| chr8_1 | mRNA | 33014312 | 33015763 | 33014312 | ID=Msa1190150-mRNA-1;Parent=Msa1190150;Name=Msa1190150-mRNA-1;_AED=0.13;_eAED=0.19;_QI=0|0|0|1|1|1|4|0|320 |
| chr8_1 | exon | 33015584 | 33015763 | 33015584 | ID=Msa1190150-mRNA-1:exon:11152;Parent=Msa1190150-mRNA-1 |
| chr8_1 | exon | 33015258 | 33015431 | 33015258 | ID=Msa1190150-mRNA-1:exon:11151;Parent=Msa1190150-mRNA-1 |
| chr8_1 | exon | 33014700 | 33015041 | 33014700 | ID=Msa1190150-mRNA-1:exon:11150;Parent=Msa1190150-mRNA-1 |
| chr8_1 | exon | 33014312 | 33014578 | 33014312 | ID=Msa1190150-mRNA-1:exon:11149;Parent=Msa1190150-mRNA-1 |
| chr8_1 | CDS | 33015584 | 33015763 | 33015584 | ID=Msa1190150-mRNA-1:cds;Parent=Msa1190150-mRNA-1 |
| chr8_1 | CDS | 33015258 | 33015431 | 33015258 | ID=Msa1190150-mRNA-1:cds;Parent=Msa1190150-mRNA-1 |
| chr8_1 | CDS | 33014700 | 33015041 | 33014700 | ID=Msa1190150-mRNA-1:cds;Parent=Msa1190150-mRNA-1 |
| chr8_1 | CDS | 33014312 | 33014578 | 33014312 | ID=Msa1190150-mRNA-1:cds;Parent=Msa1190150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
