Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1190190 | KEH39580.1 | 48.012 | 327 | 119 | 8 | 4 | 296 | 47 | 356 | 2.09e-81 | 260 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1190190 | sp|Q5KQI4|Y5814_ORYSJ | 62.500 | 96 | 36 | 0 | 19 | 114 | 113 | 208 | 2.20e-39 | 142 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa1190190 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1190190 | MtrunA17_Chr2g0332121 | 48.012 | 327 | 119 | 8 | 4 | 296 | 101 | 410 | 5.92e-85 | 260 |
| Msa1190190 | MtrunA17_Chr4g0002411 | 67.619 | 105 | 34 | 0 | 10 | 114 | 45 | 149 | 5.83e-47 | 155 |
| Msa1190190 | MtrunA17_Chr4g0056751 | 70.213 | 94 | 22 | 1 | 183 | 276 | 112 | 199 | 1.20e-32 | 121 |
| Msa1190190 | MtrunA17_Chr3g0133791 | 45.833 | 96 | 52 | 0 | 19 | 114 | 108 | 203 | 1.04e-24 | 99.4 |
| Msa1190190 | MtrunA17_Chr8g0375001 | 53.659 | 82 | 38 | 0 | 31 | 112 | 34 | 115 | 2.47e-24 | 96.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1190190 | AT5G58280.1 | 55.556 | 108 | 48 | 0 | 7 | 114 | 89 | 196 | 1.17e-35 | 129 |
| Msa1190190 | AT5G58280.3 | 55.556 | 108 | 48 | 0 | 7 | 114 | 121 | 228 | 1.32e-35 | 130 |
| Msa1190190 | AT5G58280.2 | 55.556 | 108 | 48 | 0 | 7 | 114 | 122 | 229 | 1.38e-35 | 130 |
| Msa1190190 | AT3G19184.1 | 46.875 | 96 | 51 | 0 | 19 | 114 | 104 | 199 | 3.23e-22 | 94.0 |
| Msa1190190 | AT3G19184.2 | 46.875 | 96 | 51 | 0 | 19 | 114 | 104 | 199 | 4.27e-22 | 94.0 |
| Msa1190190 | AT5G42700.1 | 44.681 | 94 | 52 | 0 | 19 | 112 | 104 | 197 | 5.44e-22 | 92.4 |
| Msa1190190 | AT5G42700.2 | 44.681 | 94 | 52 | 0 | 19 | 112 | 59 | 152 | 5.81e-22 | 91.3 |
Find 45 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATTCATTCTTACCTTCTT+TGG | 0.170238 | 8_1:-33077605 | None:intergenic |
| TCAATTTGTTCTTCCCCTTT+TGG | 0.185000 | 8_1:-33077421 | None:intergenic |
| ATTTGCATTGGAACATAAAT+TGG | 0.189949 | 8_1:+33077017 | Msa1190190:CDS |
| CCATTCTTCTTGCGCGTGTT+AGG | 0.308971 | 8_1:-33077694 | None:intergenic |
| CATGTGCTTGCTTCACCATC+TGG | 0.323630 | 8_1:-33077757 | None:intergenic |
| AATATTAGTAACATGGCTAT+TGG | 0.329071 | 8_1:+33076539 | None:intergenic |
| TAAAACTGAACGGCTTCTAT+TGG | 0.340730 | 8_1:+33077645 | Msa1190190:CDS |
| CTCCTGACTCTAAGTCAAAA+GGG | 0.381899 | 8_1:+33077308 | Msa1190190:CDS |
| GACTTAGAGTCAGGAGTAGT+AGG | 0.391020 | 8_1:-33077301 | None:intergenic |
| TCTTCCAGGGTCTTCCTAGT+AGG | 0.396253 | 8_1:+33076875 | Msa1190190:intron |
| ACCATTGACTTGATAAATGA+TGG | 0.398569 | 8_1:-33076677 | None:intergenic |
| CCTAACACGCGCAAGAAGAA+TGG | 0.412184 | 8_1:+33077694 | Msa1190190:CDS |
| GAGTATGATGTTGTCTATAT+TGG | 0.436717 | 8_1:+33076961 | Msa1190190:CDS |
| ACTCCTGACTCTAAGTCAAA+AGG | 0.442221 | 8_1:+33077307 | Msa1190190:CDS |
| GTCTATATTGGCAGTAGAAG+TGG | 0.481140 | 8_1:+33076973 | Msa1190190:CDS |
| TCAACTTGTGCTTCACAAGT+TGG | 0.481970 | 8_1:-33077532 | None:intergenic |
| AACAACAAAGAACTCGTGCT+TGG | 0.497832 | 8_1:+33076612 | Msa1190190:CDS |
| TCCATCATTTATCAAGTCAA+TGG | 0.499589 | 8_1:+33076676 | Msa1190190:CDS |
| TGTTCCTCACAAAACCTACT+AGG | 0.504504 | 8_1:-33076889 | None:intergenic |
| AAGTCAATGGTCCGGTCTCA+TGG | 0.512045 | 8_1:+33076689 | Msa1190190:CDS |
| GCTACTACTCCTGATCCAAA+AGG | 0.514593 | 8_1:+33077406 | Msa1190190:CDS |
| ACAAAGAACTCGTGCTTGGA+AGG | 0.515051 | 8_1:+33076616 | Msa1190190:CDS |
| CTACTACTCCTGATCCAAAA+GGG | 0.521002 | 8_1:+33077407 | Msa1190190:CDS |
| CTAACACGCGCAAGAAGAAT+GGG | 0.523922 | 8_1:+33077695 | Msa1190190:CDS |
| GACTCTTTAGTTACGTTGCA+AGG | 0.524631 | 8_1:+33076561 | Msa1190190:CDS |
| AATTGAAATTGTTGAAGCAA+AGG | 0.524896 | 8_1:+33077438 | Msa1190190:CDS |
| GAAGTGGGCTAAGTGGTGGC+TGG | 0.540038 | 8_1:+33076989 | Msa1190190:CDS |
| GGGCTAAGTGGTGGCTGGAG+AGG | 0.544907 | 8_1:+33076994 | Msa1190190:CDS |
| CATTTATCAAGTCAATGGTC+CGG | 0.559658 | 8_1:+33076681 | Msa1190190:CDS |
| AACAGCTAAAACCATGAGAC+CGG | 0.566641 | 8_1:-33076700 | None:intergenic |
| TTTAGAGGATGAAAATGGCT+CGG | 0.571858 | 8_1:+33076939 | Msa1190190:CDS |
| TCGTGCTTGGAAGGCTGCAG+AGG | 0.573588 | 8_1:+33076625 | Msa1190190:CDS |
| TCTATATTGGCAGTAGAAGT+GGG | 0.573838 | 8_1:+33076974 | Msa1190190:CDS |
| AAGACAAGGAAGTCCAAAGA+AGG | 0.577361 | 8_1:+33077592 | Msa1190190:CDS |
| TTGGAACATAAATTGGATGA+TGG | 0.579994 | 8_1:+33077024 | Msa1190190:CDS |
| GGCAGTAGAAGTGGGCTAAG+TGG | 0.585137 | 8_1:+33076982 | Msa1190190:CDS |
| TTAATGAAAGTTAAGCCAGA+TGG | 0.605559 | 8_1:+33077742 | Msa1190190:CDS |
| TGGCTGGAGAGGATTTGCAT+TGG | 0.612968 | 8_1:+33077005 | Msa1190190:CDS |
| TCCTGACTCTAAGTCAAAAG+GGG | 0.616375 | 8_1:+33077309 | Msa1190190:CDS |
| ATGACTCAACTAAAACTGAA+CGG | 0.619978 | 8_1:+33077635 | Msa1190190:CDS |
| TTAGAGTCAGGAGTAGTAGG+TGG | 0.638133 | 8_1:-33077298 | None:intergenic |
| TACTACTCCTGATCCAAAAG+GGG | 0.651841 | 8_1:+33077408 | Msa1190190:CDS |
| TAAAATTGTCAAACAAGACA+AGG | 0.658988 | 8_1:+33077578 | Msa1190190:CDS |
| AGTTGAAACTGTGAAACCAA+AGG | 0.667404 | 8_1:+33077549 | Msa1190190:CDS |
| AGTAGAAGTGGGCTAAGTGG+TGG | 0.694572 | 8_1:+33076985 | Msa1190190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GACAAATAAATATAATATTT+TGG | - | chr8_1:33076850-33076869 | None:intergenic | 10.0% |
| !!! | GACAAATAAATATAATATTT+TGG | - | chr8_1:33076850-33076869 | None:intergenic | 10.0% |
| !!! | GTTCAGAATATTTTTCTATA+TGG | + | chr8_1:33076741-33076760 | Msa1190190:intron | 20.0% |
| !! | TAAAAAGAATGTACAAAACA+TGG | - | chr8_1:33076782-33076801 | None:intergenic | 20.0% |
| !!! | GTTCAGAATATTTTTCTATA+TGG | + | chr8_1:33076741-33076760 | Msa1190190:intron | 20.0% |
| !! | TAAAAAGAATGTACAAAACA+TGG | - | chr8_1:33076782-33076801 | None:intergenic | 20.0% |
| ! | TTATTTGTCTTTATTCTTCC+AGG | + | chr8_1:33076861-33076880 | Msa1190190:intron | 25.0% |
| ! | TATTTGTCTTTATTCTTCCA+GGG | + | chr8_1:33076862-33076881 | Msa1190190:intron | 25.0% |
| !!! | ATGATTTTAGAGGATGAAAA+TGG | + | chr8_1:33076934-33076953 | Msa1190190:CDS | 25.0% |
| ! | ATTTGCATTGGAACATAAAT+TGG | + | chr8_1:33077017-33077036 | Msa1190190:CDS | 25.0% |
| !!! | TGATGCACTTGTTTTTTAAT+CGG | + | chr8_1:33077047-33077066 | Msa1190190:intron | 25.0% |
| !!! | GAAGATTTAGTTTTTCCATT+CGG | - | chr8_1:33077252-33077271 | None:intergenic | 25.0% |
| ! | AATTGAAATTGTTGAAGCAA+AGG | + | chr8_1:33077438-33077457 | Msa1190190:CDS | 25.0% |
| ! | TAAAATTGTCAAACAAGACA+AGG | + | chr8_1:33077578-33077597 | Msa1190190:CDS | 25.0% |
| ! | TTATTTGTCTTTATTCTTCC+AGG | + | chr8_1:33076861-33076880 | Msa1190190:intron | 25.0% |
| ! | TATTTGTCTTTATTCTTCCA+GGG | + | chr8_1:33076862-33076881 | Msa1190190:intron | 25.0% |
| !!! | ATGATTTTAGAGGATGAAAA+TGG | + | chr8_1:33076934-33076953 | Msa1190190:CDS | 25.0% |
| ! | ATTTGCATTGGAACATAAAT+TGG | + | chr8_1:33077017-33077036 | Msa1190190:CDS | 25.0% |
| !!! | TGATGCACTTGTTTTTTAAT+CGG | + | chr8_1:33077047-33077066 | Msa1190190:intron | 25.0% |
| !!! | GAAGATTTAGTTTTTCCATT+CGG | - | chr8_1:33077252-33077271 | None:intergenic | 25.0% |
| ! | AATTGAAATTGTTGAAGCAA+AGG | + | chr8_1:33077438-33077457 | Msa1190190:CDS | 25.0% |
| ! | TAAAATTGTCAAACAAGACA+AGG | + | chr8_1:33077578-33077597 | Msa1190190:CDS | 25.0% |
| !!! | GCTTTTTCGATTTCATCTAT+TGG | - | chr8_1:33076587-33076606 | None:intergenic | 30.0% |
| TCCATCATTTATCAAGTCAA+TGG | + | chr8_1:33076676-33076695 | Msa1190190:CDS | 30.0% | |
| !! | ACCATTGACTTGATAAATGA+TGG | - | chr8_1:33076680-33076699 | None:intergenic | 30.0% |
| ! | ATCATGTTATGCACTGTTTT+TGG | - | chr8_1:33076919-33076938 | None:intergenic | 30.0% |
| ! | AGTGCATAACATGATTTTAG+AGG | + | chr8_1:33076924-33076943 | Msa1190190:CDS | 30.0% |
| GAGTATGATGTTGTCTATAT+TGG | + | chr8_1:33076961-33076980 | Msa1190190:CDS | 30.0% | |
| TTGGAACATAAATTGGATGA+TGG | + | chr8_1:33077024-33077043 | Msa1190190:CDS | 30.0% | |
| !! | AAGCTTTGAAAGGACTAATT+TGG | - | chr8_1:33077151-33077170 | None:intergenic | 30.0% |
| ! | GTTTTCTTTATAGCTGTCTT+TGG | - | chr8_1:33077358-33077377 | None:intergenic | 30.0% |
| ACATTCATTCTTACCTTCTT+TGG | - | chr8_1:33077608-33077627 | None:intergenic | 30.0% | |
| ATGACTCAACTAAAACTGAA+CGG | + | chr8_1:33077635-33077654 | Msa1190190:CDS | 30.0% | |
| TTAATGAAAGTTAAGCCAGA+TGG | + | chr8_1:33077742-33077761 | Msa1190190:CDS | 30.0% | |
| !!! | GCTTTTTCGATTTCATCTAT+TGG | - | chr8_1:33076587-33076606 | None:intergenic | 30.0% |
| TCCATCATTTATCAAGTCAA+TGG | + | chr8_1:33076676-33076695 | Msa1190190:CDS | 30.0% | |
| !! | ACCATTGACTTGATAAATGA+TGG | - | chr8_1:33076680-33076699 | None:intergenic | 30.0% |
| ! | ATCATGTTATGCACTGTTTT+TGG | - | chr8_1:33076919-33076938 | None:intergenic | 30.0% |
| ! | AGTGCATAACATGATTTTAG+AGG | + | chr8_1:33076924-33076943 | Msa1190190:CDS | 30.0% |
| GAGTATGATGTTGTCTATAT+TGG | + | chr8_1:33076961-33076980 | Msa1190190:CDS | 30.0% | |
| TTGGAACATAAATTGGATGA+TGG | + | chr8_1:33077024-33077043 | Msa1190190:CDS | 30.0% | |
| !! | AAGCTTTGAAAGGACTAATT+TGG | - | chr8_1:33077151-33077170 | None:intergenic | 30.0% |
| ! | GTTTTCTTTATAGCTGTCTT+TGG | - | chr8_1:33077358-33077377 | None:intergenic | 30.0% |
| ACATTCATTCTTACCTTCTT+TGG | - | chr8_1:33077608-33077627 | None:intergenic | 30.0% | |
| ATGACTCAACTAAAACTGAA+CGG | + | chr8_1:33077635-33077654 | Msa1190190:CDS | 30.0% | |
| TTAATGAAAGTTAAGCCAGA+TGG | + | chr8_1:33077742-33077761 | Msa1190190:CDS | 30.0% | |
| CATTTATCAAGTCAATGGTC+CGG | + | chr8_1:33076681-33076700 | Msa1190190:CDS | 35.0% | |
| !!! | CTCATGGTTTTAGCTGTTTT+TGG | + | chr8_1:33076705-33076724 | Msa1190190:CDS | 35.0% |
| !!! | TGGTTTTAGCTGTTTTTGGT+TGG | + | chr8_1:33076709-33076728 | Msa1190190:CDS | 35.0% |
| AAACATGGATAAGAATGTGC+AGG | - | chr8_1:33076767-33076786 | None:intergenic | 35.0% | |
| TTTAGAGGATGAAAATGGCT+CGG | + | chr8_1:33076939-33076958 | Msa1190190:CDS | 35.0% | |
| TCTATATTGGCAGTAGAAGT+GGG | + | chr8_1:33076974-33076993 | Msa1190190:CDS | 35.0% | |
| ACAAAGAATTCAAACCACAG+AGG | + | chr8_1:33077220-33077239 | Msa1190190:intron | 35.0% | |
| CAAAGAATTCAAACCACAGA+GGG | + | chr8_1:33077221-33077240 | Msa1190190:intron | 35.0% | |
| !! | TCAATTTGTTCTTCCCCTTT+TGG | - | chr8_1:33077424-33077443 | None:intergenic | 35.0% |
| AGTTGAAACTGTGAAACCAA+AGG | + | chr8_1:33077549-33077568 | Msa1190190:CDS | 35.0% | |
| ! | GACAATTTTATAGCTGCCTT+TGG | - | chr8_1:33077568-33077587 | None:intergenic | 35.0% |
| TAAAACTGAACGGCTTCTAT+TGG | + | chr8_1:33077645-33077664 | Msa1190190:CDS | 35.0% | |
| !!! | TTATGCGCTGATTTTTTTCG+AGG | - | chr8_1:33077796-33077815 | None:intergenic | 35.0% |
| CATTTATCAAGTCAATGGTC+CGG | + | chr8_1:33076681-33076700 | Msa1190190:CDS | 35.0% | |
| !!! | CTCATGGTTTTAGCTGTTTT+TGG | + | chr8_1:33076705-33076724 | Msa1190190:CDS | 35.0% |
| !!! | TGGTTTTAGCTGTTTTTGGT+TGG | + | chr8_1:33076709-33076728 | Msa1190190:CDS | 35.0% |
| AAACATGGATAAGAATGTGC+AGG | - | chr8_1:33076767-33076786 | None:intergenic | 35.0% | |
| TTTAGAGGATGAAAATGGCT+CGG | + | chr8_1:33076939-33076958 | Msa1190190:CDS | 35.0% | |
| TCTATATTGGCAGTAGAAGT+GGG | + | chr8_1:33076974-33076993 | Msa1190190:CDS | 35.0% | |
| ACAAAGAATTCAAACCACAG+AGG | + | chr8_1:33077220-33077239 | Msa1190190:intron | 35.0% | |
| CAAAGAATTCAAACCACAGA+GGG | + | chr8_1:33077221-33077240 | Msa1190190:intron | 35.0% | |
| !! | TCAATTTGTTCTTCCCCTTT+TGG | - | chr8_1:33077424-33077443 | None:intergenic | 35.0% |
| AGTTGAAACTGTGAAACCAA+AGG | + | chr8_1:33077549-33077568 | Msa1190190:CDS | 35.0% | |
| ! | GACAATTTTATAGCTGCCTT+TGG | - | chr8_1:33077568-33077587 | None:intergenic | 35.0% |
| TAAAACTGAACGGCTTCTAT+TGG | + | chr8_1:33077645-33077664 | Msa1190190:CDS | 35.0% | |
| !!! | TTATGCGCTGATTTTTTTCG+AGG | - | chr8_1:33077796-33077815 | None:intergenic | 35.0% |
| GACTCTTTAGTTACGTTGCA+AGG | + | chr8_1:33076561-33076580 | Msa1190190:CDS | 40.0% | |
| AACAACAAAGAACTCGTGCT+TGG | + | chr8_1:33076612-33076631 | Msa1190190:CDS | 40.0% | |
| AACAGCTAAAACCATGAGAC+CGG | - | chr8_1:33076703-33076722 | None:intergenic | 40.0% | |
| !! | TCTTCCTAGTAGGTTTTGTG+AGG | + | chr8_1:33076885-33076904 | Msa1190190:CDS | 40.0% |
| TGTTCCTCACAAAACCTACT+AGG | - | chr8_1:33076892-33076911 | None:intergenic | 40.0% | |
| GTCTATATTGGCAGTAGAAG+TGG | + | chr8_1:33076973-33076992 | Msa1190190:CDS | 40.0% | |
| ! | CAACTCTCGTTTAACTTCGA+AGG | + | chr8_1:33077115-33077134 | Msa1190190:intron | 40.0% |
| !! | AGGAACGCTTAAGCTTTGAA+AGG | - | chr8_1:33077161-33077180 | None:intergenic | 40.0% |
| AAAAGCTAGCTCAAGAGGTA+AGG | - | chr8_1:33077181-33077200 | None:intergenic | 40.0% | |
| !!! | TTACCTCTTGAGCTAGCTTT+TGG | + | chr8_1:33077180-33077199 | Msa1190190:intron | 40.0% |
| ACTCCTGACTCTAAGTCAAA+AGG | + | chr8_1:33077307-33077326 | Msa1190190:CDS | 40.0% | |
| CTCCTGACTCTAAGTCAAAA+GGG | + | chr8_1:33077308-33077327 | Msa1190190:CDS | 40.0% | |
| TCCTGACTCTAAGTCAAAAG+GGG | + | chr8_1:33077309-33077328 | Msa1190190:CDS | 40.0% | |
| CTACTACTCCTGATCCAAAA+GGG | + | chr8_1:33077407-33077426 | Msa1190190:CDS | 40.0% | |
| TACTACTCCTGATCCAAAAG+GGG | + | chr8_1:33077408-33077427 | Msa1190190:CDS | 40.0% | |
| TCAACTTGTGCTTCACAAGT+TGG | - | chr8_1:33077535-33077554 | None:intergenic | 40.0% | |
| AAGACAAGGAAGTCCAAAGA+AGG | + | chr8_1:33077592-33077611 | Msa1190190:CDS | 40.0% | |
| GACTCTTTAGTTACGTTGCA+AGG | + | chr8_1:33076561-33076580 | Msa1190190:CDS | 40.0% | |
| AACAACAAAGAACTCGTGCT+TGG | + | chr8_1:33076612-33076631 | Msa1190190:CDS | 40.0% | |
| AACAGCTAAAACCATGAGAC+CGG | - | chr8_1:33076703-33076722 | None:intergenic | 40.0% | |
| !! | TCTTCCTAGTAGGTTTTGTG+AGG | + | chr8_1:33076885-33076904 | Msa1190190:CDS | 40.0% |
| TGTTCCTCACAAAACCTACT+AGG | - | chr8_1:33076892-33076911 | None:intergenic | 40.0% | |
| GTCTATATTGGCAGTAGAAG+TGG | + | chr8_1:33076973-33076992 | Msa1190190:CDS | 40.0% | |
| ! | CAACTCTCGTTTAACTTCGA+AGG | + | chr8_1:33077115-33077134 | Msa1190190:intron | 40.0% |
| !! | AGGAACGCTTAAGCTTTGAA+AGG | - | chr8_1:33077161-33077180 | None:intergenic | 40.0% |
| AAAAGCTAGCTCAAGAGGTA+AGG | - | chr8_1:33077181-33077200 | None:intergenic | 40.0% | |
| !!! | TTACCTCTTGAGCTAGCTTT+TGG | + | chr8_1:33077180-33077199 | Msa1190190:intron | 40.0% |
| ACTCCTGACTCTAAGTCAAA+AGG | + | chr8_1:33077307-33077326 | Msa1190190:CDS | 40.0% | |
| CTCCTGACTCTAAGTCAAAA+GGG | + | chr8_1:33077308-33077327 | Msa1190190:CDS | 40.0% | |
| TCCTGACTCTAAGTCAAAAG+GGG | + | chr8_1:33077309-33077328 | Msa1190190:CDS | 40.0% | |
| CTACTACTCCTGATCCAAAA+GGG | + | chr8_1:33077407-33077426 | Msa1190190:CDS | 40.0% | |
| TACTACTCCTGATCCAAAAG+GGG | + | chr8_1:33077408-33077427 | Msa1190190:CDS | 40.0% | |
| TCAACTTGTGCTTCACAAGT+TGG | - | chr8_1:33077535-33077554 | None:intergenic | 40.0% | |
| AAGACAAGGAAGTCCAAAGA+AGG | + | chr8_1:33077592-33077611 | Msa1190190:CDS | 40.0% | |
| ACAAAGAACTCGTGCTTGGA+AGG | + | chr8_1:33076616-33076635 | Msa1190190:CDS | 45.0% | |
| AAAACCTACTAGGAAGACCC+TGG | - | chr8_1:33076882-33076901 | None:intergenic | 45.0% | |
| GGTTGAAGCGACGAGATTTA+AGG | + | chr8_1:33077068-33077087 | Msa1190190:intron | 45.0% | |
| TTAGAGTCAGGAGTAGTAGG+TGG | - | chr8_1:33077301-33077320 | None:intergenic | 45.0% | |
| GACTTAGAGTCAGGAGTAGT+AGG | - | chr8_1:33077304-33077323 | None:intergenic | 45.0% | |
| !!! | TCCCCTTTTGACTTAGAGTC+AGG | - | chr8_1:33077313-33077332 | None:intergenic | 45.0% |
| GCTACTACTCCTGATCCAAA+AGG | + | chr8_1:33077406-33077425 | Msa1190190:CDS | 45.0% | |
| ! | TGTTCTTCCCCTTTTGGATC+AGG | - | chr8_1:33077418-33077437 | None:intergenic | 45.0% |
| CTAACACGCGCAAGAAGAAT+GGG | + | chr8_1:33077695-33077714 | Msa1190190:CDS | 45.0% | |
| ACAAAGAACTCGTGCTTGGA+AGG | + | chr8_1:33076616-33076635 | Msa1190190:CDS | 45.0% | |
| AAAACCTACTAGGAAGACCC+TGG | - | chr8_1:33076882-33076901 | None:intergenic | 45.0% | |
| GGTTGAAGCGACGAGATTTA+AGG | + | chr8_1:33077068-33077087 | Msa1190190:intron | 45.0% | |
| TTAGAGTCAGGAGTAGTAGG+TGG | - | chr8_1:33077301-33077320 | None:intergenic | 45.0% | |
| GACTTAGAGTCAGGAGTAGT+AGG | - | chr8_1:33077304-33077323 | None:intergenic | 45.0% | |
| !!! | TCCCCTTTTGACTTAGAGTC+AGG | - | chr8_1:33077313-33077332 | None:intergenic | 45.0% |
| GCTACTACTCCTGATCCAAA+AGG | + | chr8_1:33077406-33077425 | Msa1190190:CDS | 45.0% | |
| ! | TGTTCTTCCCCTTTTGGATC+AGG | - | chr8_1:33077418-33077437 | None:intergenic | 45.0% |
| CTAACACGCGCAAGAAGAAT+GGG | + | chr8_1:33077695-33077714 | Msa1190190:CDS | 45.0% | |
| AAGTCAATGGTCCGGTCTCA+TGG | + | chr8_1:33076689-33076708 | Msa1190190:CDS | 50.0% | |
| TCTTCCAGGGTCTTCCTAGT+AGG | + | chr8_1:33076875-33076894 | Msa1190190:intron | 50.0% | |
| !! | AGTAGAAGTGGGCTAAGTGG+TGG | + | chr8_1:33076985-33077004 | Msa1190190:CDS | 50.0% |
| TGGCTGGAGAGGATTTGCAT+TGG | + | chr8_1:33077005-33077024 | Msa1190190:CDS | 50.0% | |
| ACGCCAAAAGCTAGCTCAAG+AGG | - | chr8_1:33077186-33077205 | None:intergenic | 50.0% | |
| !!! | GAGCTAGCTTTTGGCGTAGA+AGG | + | chr8_1:33077189-33077208 | Msa1190190:intron | 50.0% |
| ! | CCATTCGGATTTTCCCTCTG+TGG | - | chr8_1:33077237-33077256 | None:intergenic | 50.0% |
| CCACAGAGGGAAAATCCGAA+TGG | + | chr8_1:33077234-33077253 | Msa1190190:intron | 50.0% | |
| CCATTCTTCTTGCGCGTGTT+AGG | - | chr8_1:33077697-33077716 | None:intergenic | 50.0% | |
| CCTAACACGCGCAAGAAGAA+TGG | + | chr8_1:33077694-33077713 | Msa1190190:CDS | 50.0% | |
| CATGTGCTTGCTTCACCATC+TGG | - | chr8_1:33077760-33077779 | None:intergenic | 50.0% | |
| AAGTCAATGGTCCGGTCTCA+TGG | + | chr8_1:33076689-33076708 | Msa1190190:CDS | 50.0% | |
| TCTTCCAGGGTCTTCCTAGT+AGG | + | chr8_1:33076875-33076894 | Msa1190190:intron | 50.0% | |
| !! | AGTAGAAGTGGGCTAAGTGG+TGG | + | chr8_1:33076985-33077004 | Msa1190190:CDS | 50.0% |
| TGGCTGGAGAGGATTTGCAT+TGG | + | chr8_1:33077005-33077024 | Msa1190190:CDS | 50.0% | |
| ACGCCAAAAGCTAGCTCAAG+AGG | - | chr8_1:33077186-33077205 | None:intergenic | 50.0% | |
| !!! | GAGCTAGCTTTTGGCGTAGA+AGG | + | chr8_1:33077189-33077208 | Msa1190190:intron | 50.0% |
| ! | CCATTCGGATTTTCCCTCTG+TGG | - | chr8_1:33077237-33077256 | None:intergenic | 50.0% |
| CCACAGAGGGAAAATCCGAA+TGG | + | chr8_1:33077234-33077253 | Msa1190190:intron | 50.0% | |
| CCATTCTTCTTGCGCGTGTT+AGG | - | chr8_1:33077697-33077716 | None:intergenic | 50.0% | |
| CCTAACACGCGCAAGAAGAA+TGG | + | chr8_1:33077694-33077713 | Msa1190190:CDS | 50.0% | |
| CATGTGCTTGCTTCACCATC+TGG | - | chr8_1:33077760-33077779 | None:intergenic | 50.0% | |
| !! | GGCAGTAGAAGTGGGCTAAG+TGG | + | chr8_1:33076982-33077001 | Msa1190190:CDS | 55.0% |
| !! | GGCAGTAGAAGTGGGCTAAG+TGG | + | chr8_1:33076982-33077001 | Msa1190190:CDS | 55.0% |
| TCGTGCTTGGAAGGCTGCAG+AGG | + | chr8_1:33076625-33076644 | Msa1190190:CDS | 60.0% | |
| !! | GAAGTGGGCTAAGTGGTGGC+TGG | + | chr8_1:33076989-33077008 | Msa1190190:CDS | 60.0% |
| TCGTGCTTGGAAGGCTGCAG+AGG | + | chr8_1:33076625-33076644 | Msa1190190:CDS | 60.0% | |
| !! | GAAGTGGGCTAAGTGGTGGC+TGG | + | chr8_1:33076989-33077008 | Msa1190190:CDS | 60.0% |
| GGGCTAAGTGGTGGCTGGAG+AGG | + | chr8_1:33076994-33077013 | Msa1190190:CDS | 65.0% | |
| GGGCTAAGTGGTGGCTGGAG+AGG | + | chr8_1:33076994-33077013 | Msa1190190:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 33076551 | 33077837 | 33076551 | ID=Msa1190190;Name=Msa1190190 |
| chr8_1 | mRNA | 33076551 | 33077837 | 33076551 | ID=Msa1190190-mRNA-1;Parent=Msa1190190;Name=Msa1190190-mRNA-1;_AED=0.08;_eAED=0.11;_QI=0|0|0|1|0.5|0.33|3|0|296 |
| chr8_1 | exon | 33076551 | 33076730 | 33076551 | ID=Msa1190190-mRNA-1:exon:11122;Parent=Msa1190190-mRNA-1 |
| chr8_1 | exon | 33076883 | 33077045 | 33076883 | ID=Msa1190190-mRNA-1:exon:11123;Parent=Msa1190190-mRNA-1 |
| chr8_1 | exon | 33077290 | 33077837 | 33077290 | ID=Msa1190190-mRNA-1:exon:11124;Parent=Msa1190190-mRNA-1 |
| chr8_1 | CDS | 33076551 | 33076730 | 33076551 | ID=Msa1190190-mRNA-1:cds;Parent=Msa1190190-mRNA-1 |
| chr8_1 | CDS | 33076883 | 33077045 | 33076883 | ID=Msa1190190-mRNA-1:cds;Parent=Msa1190190-mRNA-1 |
| chr8_1 | CDS | 33077290 | 33077837 | 33077290 | ID=Msa1190190-mRNA-1:cds;Parent=Msa1190190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
