AlfalfaGEDB | Msa1190340

M. sativa cultivar zhongmu-4 / Msa1190340

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1190340	XP_013445477.2	94.134	716	22	2	1	696	1	716	0.0	1383

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1190340	sp\|Q56XZ1\|SHB_ARATH	46.806	720	307	13	1	696	1	668	0.0	596

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1190340	A0A396GKW5	94.134	716	22	2	1	696	1	716	0.0	1383

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TFs/TRs:

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Gene ID	Type	Classification
Msa1190340	TF	STAT

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1190340	MtrunA17_Chr8g0359041	94.134	716	22	2	1	696	1	716	0.0	1383

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1190340	AT1G78540.1	46.806	720	307	13	1	696	1	668	596
Msa1190340	AT1G78540.2	46.713	715	305	13	1	691	1	663	591
Msa1190340	AT1G17040.1	45.341	719	288	11	1	694	1	639	582
Msa1190340	AT1G17040.2	44.856	729	287	12	1	694	1	649	573
Msa1190340	AT1G78540.3	45.706	687	297	13	1	663	1	635	552
Msa1190340	AT1G17040.3	44.331	688	278	11	1	663	1	608	542

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Find 205 sgRNAs with CRISPR-Local

Find 930 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAACCCACTGATGAAG+AGG	0.534477	8_1:-33214605	Msa1190340:CDS
AAACCTCTTCATCAGTGGGT+TGG	0.490109	8_1:+33214602	None:intergenic
AAAGGATAATCTCCTAATTT+TGG	0.151104	8_1:+33214798	None:intergenic
AAATTCACCTTCAAATAGCA+TGG	0.570364	8_1:-33212285	Msa1190340:CDS
AACCCCACCATAAAGCAATC+TGG	0.385813	8_1:-33214540	Msa1190340:CDS
AACCTTTGTGGAGACAGTAG+TGG	0.645377	8_1:-33217544	Msa1190340:CDS
AACGAGAAAAGGAGCACTTT+CGG	0.410857	8_1:+33218513	None:intergenic
AAGAAGAAAGTGATGGTGTT+TGG	0.389600	8_1:-33217262	Msa1190340:CDS
AAGAATGGTGGTAGGGAATG+TGG	0.550704	8_1:+33219865	None:intergenic
AAGTAGAAGATATCAAATAT+CGG	0.473248	8_1:-33212261	Msa1190340:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGAAATGAGAAAGAACGAA+GGG	-	chr8_1:33207333-33207352	Msa1190340:three_prime_UTR	30.0%
TAAGCTGAAGGATTTATGTT+TGG	-	chr8_1:33207361-33207380	Msa1190340:three_prime_UTR	30.0%
ATGATTAACCTGATGAAGAA+TGG	+	chr8_1:33207462-33207481	None:intergenic	30.0%
ACTTGAGAACTATGTATGAA+TGG	+	chr8_1:33207798-33207817	None:intergenic	30.0%
CTTGGGTATTATAAGTGTTA+TGG	-	chr8_1:33208075-33208094	Msa1190340:intron	30.0%
TATAAGTGTTATGGGATGTT+CGG	-	chr8_1:33208084-33208103	Msa1190340:intron	30.0%
CCCTTAAAATCTAGCTATAA+TGG	+	chr8_1:33208138-33208157	None:intergenic	30.0%
AAACATGCAAACAGAAAAAG+GGG	+	chr8_1:33208379-33208398	None:intergenic	30.0%
AGTATACCAATTTAGCATTG+TGG	-	chr8_1:33208604-33208623	Msa1190340:CDS	30.0%
AGTAAACCACAATGCTAAAT+TGG	+	chr8_1:33208613-33208632	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	33207167	33220164	33207167	ID=Msa1190340;Name=Msa1190340
chr8_1	mRNA	33207167	33220164	33207167	ID=Msa1190340-mRNA-1;Parent=Msa1190340;Name=Msa1190340-mRNA-1;_AED=0.09;_eAED=0.09;_QI=156\|0.90\|0.91\|1\|0.90\|0.91\|12\|247\|696
chr8_1	exon	33207167	33207432	33207167	ID=Msa1190340-mRNA-1:exon:11219;Parent=Msa1190340-mRNA-1
chr8_1	exon	33207524	33207601	33207524	ID=Msa1190340-mRNA-1:exon:11218;Parent=Msa1190340-mRNA-1
chr8_1	exon	33208436	33208785	33208436	ID=Msa1190340-mRNA-1:exon:11217;Parent=Msa1190340-mRNA-1
chr8_1	exon	33209501	33209606	33209501	ID=Msa1190340-mRNA-1:exon:11216;Parent=Msa1190340-mRNA-1
chr8_1	exon	33212119	33212405	33212119	ID=Msa1190340-mRNA-1:exon:11215;Parent=Msa1190340-mRNA-1
chr8_1	exon	33214500	33214868	33214500	ID=Msa1190340-mRNA-1:exon:11214;Parent=Msa1190340-mRNA-1
chr8_1	exon	33216413	33216577	33216413	ID=Msa1190340-mRNA-1:exon:11213;Parent=Msa1190340-mRNA-1
chr8_1	exon	33216681	33216758	33216681	ID=Msa1190340-mRNA-1:exon:11212;Parent=Msa1190340-mRNA-1
chr8_1	exon	33217244	33217333	33217244	ID=Msa1190340-mRNA-1:exon:11211;Parent=Msa1190340-mRNA-1
chr8_1	exon	33217474	33217683	33217474	ID=Msa1190340-mRNA-1:exon:11210;Parent=Msa1190340-mRNA-1
chr8_1	exon	33218363	33218551	33218363	ID=Msa1190340-mRNA-1:exon:11209;Parent=Msa1190340-mRNA-1
chr8_1	exon	33219859	33220164	33219859	ID=Msa1190340-mRNA-1:exon:11208;Parent=Msa1190340-mRNA-1
chr8_1	five_prime_UTR	33220009	33220164	33220009	ID=Msa1190340-mRNA-1:five_prime_utr;Parent=Msa1190340-mRNA-1
chr8_1	CDS	33219859	33220008	33219859	ID=Msa1190340-mRNA-1:cds;Parent=Msa1190340-mRNA-1
chr8_1	CDS	33218363	33218551	33218363	ID=Msa1190340-mRNA-1:cds;Parent=Msa1190340-mRNA-1
chr8_1	CDS	33217474	33217683	33217474	ID=Msa1190340-mRNA-1:cds;Parent=Msa1190340-mRNA-1
chr8_1	CDS	33217244	33217333	33217244	ID=Msa1190340-mRNA-1:cds;Parent=Msa1190340-mRNA-1
chr8_1	CDS	33216681	33216758	33216681	ID=Msa1190340-mRNA-1:cds;Parent=Msa1190340-mRNA-1
chr8_1	CDS	33216413	33216577	33216413	ID=Msa1190340-mRNA-1:cds;Parent=Msa1190340-mRNA-1
chr8_1	CDS	33214500	33214868	33214500	ID=Msa1190340-mRNA-1:cds;Parent=Msa1190340-mRNA-1
chr8_1	CDS	33212119	33212405	33212119	ID=Msa1190340-mRNA-1:cds;Parent=Msa1190340-mRNA-1
chr8_1	CDS	33209501	33209606	33209501	ID=Msa1190340-mRNA-1:cds;Parent=Msa1190340-mRNA-1
chr8_1	CDS	33208436	33208785	33208436	ID=Msa1190340-mRNA-1:cds;Parent=Msa1190340-mRNA-1
chr8_1	CDS	33207524	33207601	33207524	ID=Msa1190340-mRNA-1:cds;Parent=Msa1190340-mRNA-1
chr8_1	CDS	33207414	33207432	33207414	ID=Msa1190340-mRNA-1:cds;Parent=Msa1190340-mRNA-1
chr8_1	three_prime_UTR	33207167	33207413	33207167	ID=Msa1190340-mRNA-1:three_prime_utr;Parent=Msa1190340-mRNA-1

Gene Sequence

>Msa1190340

ATGGGTAATGATGAAATGAGAAAGAACGAAGGGTACTGTAAGCTGAAGGATTTATGTTTGGATTTTGTTGAATATGATGGAACTTTCTCTTTCTGCTTTTGGATTTATCTCACTAAATCAACCACATTCCCTACCACCATTCTTCATCAGATTCACTCTGACATTTCCGAAAGTGCTCCTTTTCTCGTTATCAACAATAATAAGAGAATCAATGTTTTGCCAGTTCTTTACTTACATGAAGAAGCTCCTGTTACTTGCATGGGTCCTTGGACAGAAGTTCCACATGTTACTGTTGATTTTGAGTTTCCTTTGGAAAAATGGGTTCATGTTGGATGTGAGGTTTGTCCAAATTATATTCGGCTTCACATTAATGGGGAGATTGTAGGAGAAAAGTCACTGTCTTCCTTATTACATAAGGAATCCAATTCAAGTAATTTGAAGGAAATACATTTGGCCAACCTTTGTGGAGACAGTAGTGGTGTGCAGGGTTACGTGTACAATTATGAAGGATTCGATACTGTTTCTTCTATCAAAGATCATCATTTAAAGGACCCTCCTCTGAAGTTATCAATAGATGAATCATCCATATCTGAGGTTGAAGAAGAAAGTGATGGTGTTTGGGGCATTGTTGGTGGTAAAGCATCTTGTCGCAGGAATGTCTCTTTAGACGTTGTTTTATCAGATGCATTTGGACAGCCTGTTGATATGGAGAATGAGGTTTTTGCTTCACTTGTGTATGCTGACACGGGGGCTCCAGTCGAGAATACAACTGATGACGAAGCACCCCTTTTGTCTAGCTATGATGGAATTGAATTTTCTTCTTGTGAAAGGCCTAGTAAATTTTTGTTGGGTCGTGCATCATTTAAGCTCAGGATATCTCAGCTTTCATCCAAGTGTGATAGCAGGTTGTTCCTCATCAGATTTTGTGTTCCAAAATTAGGAGATTATCCTTTCCTTCAGACAAACACCCGTCCGATTCGATGCATCTCCAGGAGCCGTAACACAAAATTATCCACGCTGGTGTGGAAAAAGTCAACTTATGCTCTTGAAAGACTCAATTTGTCGCAATCTTCAGCAATTGATGATGTGTCATTGGAAAGTATGAATTCTGGCCACGAAGAAAAAACCAACCCACTGATGAAGAGGTTTAGAGTTGGACTTGACAAGATATCTGTATCAGTTAAGGCCAACCCCACCATAAAGCAATCTGGGGTAGAATGTAATAATTCTCATGTATGGACTGCTAATCAGGTTGAGAATGGGTTTCCAAAAAGCTTGGATGGCCGATCTCTTAACTTTGAAGAAGCAGATGTCTCTCCATCTGAATCATCAGAGAGTACAGGGGAGAGAAATTCACCTTCAAATAGCATGGAAAGTAGAAGATATCAAATATCGGATATGACCATTTTCAAATACTGTCTGGCAGGCTTGGCTGAGAGATCTCAAATGCTTAAAGAAATTGCCATCTCTGCTTCAGACAAAGAAATTTCAGAGTTGGCTCATCATGTTTCACACTTTTCAGGATGTTCCCACCACAGAAACCAAATATTAATTTCCAAGAGATTGATAGAAGATGGAACTAATCTTTGGCTGGCAATGTCTCCAAACAACCACCCCATTCCTTGGAAGAGCGCAGTGTATGAGGACCTTGAGATTCTAAGAAGCATTGCGGGATGTCAAGAGTATCTATCACTAGAGAACTTTGAGAAGTTATGGTGCTGGTTGTACCCTGTAGCGTGTGTAATATCCAGGGACTGGGTAAATGCTATCTGGAATTCCATGTCACCTAAATGGATTGAAGGATTCATCACCAAGGAGGAGGCAGAAGCTTCACTTCAAGGTCCAGGAGGATTTCAAGAACGTGGTACTTTTATACTTCGGTTCCCCACCTCAAGAAGCTGGCCCCACCCAGATGCCGGTTGCCTAATTGTTACATATGTTGGGAATGACTACAAACTTCGCCACAAACTACTTTCAATGGATCATATATACGGCTCTGATAATCAAAGAATAGATGTAAAACCATTGCAAGATATGCTACTGGCAGAACCTGAGCTGTCCCGTTTGGGAAGGATAATGAGAAGTTATTAA

Protein sequence

>Msa1190340

MGNDEMRKNEGYCKLKDLCLDFVEYDGTFSFCFWIYLTKSTTFPTTILHQIHSDISESAPFLVINNNKRINVLPVLYLHEEAPVTCMGPWTEVPHVTVDFEFPLEKWVHVGCEVCPNYIRLHINGEIVGEKSLSSLLHKESNSSNLKEIHLANLCGDSSGVQGYVYNYEGFDTVSSIKDHHLKDPPLKLSIDESSISEVEEESDGVWGIVGGKASCRRNVSLDVVLSDAFGQPVDMENEVFASLVYADTGAPVENTTDDEAPLLSSYDGIEFSSCERPSKFLLGRASFKLRISQLSSKCDSRLFLIRFCVPKLGDYPFLQTNTRPIRCISRSRNTKLSTLVWKKSTYALERLNLSQSSAIDDVSLESMNSGHEEKTNPLMKRFRVGLDKISVSVKANPTIKQSGVECNNSHVWTANQVENGFPKSLDGRSLNFEEADVSPSESSESTGERNSPSNSMESRRYQISDMTIFKYCLAGLAERSQMLKEIAISASDKEISELAHHVSHFSGCSHHRNQILISKRLIEDGTNLWLAMSPNNHPIPWKSAVYEDLEILRSIAGCQEYLSLENFEKLWCWLYPVACVISRDWVNAIWNSMSPKWIEGFITKEEAEASLQGPGGFQERGTFILRFPTSRSWPHPDAGCLIVTYVGNDYKLRHKLLSMDHIYGSDNQRIDVKPLQDMLLAEPELSRLGRIMRSY*