AlfalfaGEDB | Msa1192620

M. sativa cultivar zhongmu-4 / Msa1192620

KEGG: K15601|K21989
GO: GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0033169 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1903506 GO:1990837 GO:2000112 GO:2001141
PFAM: PF02373.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1192620	XP_013462889.1	90.722	97	9	0	44	140	729	825	1.53e-50	182

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1192620	sp\|Q9SSE9\|JMJ25_ARATH	65.556	90	31	0	44	133	803	892	8.09e-36	133

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa1192620	TR	Jumonji

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1192620	MtrunA17_Chr2g0289121	58.854	192	17	3	10	140	637	827	1.96e-61	201
Msa1192620	MtrunA17_Chr2g0289031	84.270	89	14	0	47	135	308	396	3.78e-48	159
Msa1192620	MtrunA17_Chr4g0075261	75.789	95	23	0	44	138	776	870	2.81e-45	157
Msa1192620	MtrunA17_Chr2g0289091	51.266	158	13	4	1	97	266	420	9.36e-38	132
Msa1192620	MtrunA17_Chr1g0211711	69.663	89	27	0	44	132	960	1048	2.02e-37	134
Msa1192620	MtrunA17_Chr1g0211701	65.169	89	31	0	44	132	27	115	2.32e-37	125
Msa1192620	MtrunA17_Chr5g0426961	69.663	89	27	0	44	132	744	832	8.01e-37	133
Msa1192620	MtrunA17_Chr1g0183311	68.539	89	28	0	44	132	791	879	1.37e-36	132
Msa1192620	MtrunA17_Chr7g0275771	66.279	86	29	0	47	132	839	924	5.25e-35	127
Msa1192620	MtrunA17_Chr1g0147021	62.366	93	35	0	47	139	1610	1702	1.18e-34	127

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1192620	AT1G11950.1	71.910	89	25	47	135	783	871	1.08e-41	147
Msa1192620	AT1G11950.3	71.910	89	25	47	135	783	871	1.08e-41	147
Msa1192620	AT3G07610.1	65.556	90	31	44	133	803	892	8.23e-37	133
Msa1192620	AT3G07610.3	65.556	90	31	44	133	825	914	8.82e-37	133
Msa1192620	AT1G62310.1	81.159	69	13	47	115	809	877	3.77e-34	125
Msa1192620	AT4G00990.1	53.684	95	44	44	138	741	835	2.88e-32	120
Msa1192620	AT1G09060.2	43.820	89	50	47	135	805	893	7.91e-21	87.8
Msa1192620	AT1G09060.1	43.820	89	50	47	135	805	893	7.91e-21	87.8
Msa1192620	AT1G09060.4	43.820	89	50	47	135	819	907	8.32e-21	87.8
Msa1192620	AT1G09060.3	43.820	89	50	47	135	819	907	8.32e-21	87.8

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Find 28 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAAATGGAAGGGCCTTCA+TGG	0.363671	8_1:+38500226	None:intergenic
ACTTGGTGAGGGCATCCAAC+AGG	0.485363	8_1:-38502763	None:intergenic
AGCTTCTGCTCAAAAGTCCA+AGG	0.599846	8_1:-38502721	None:intergenic
AGCTTTCCTTTGATCTCAAA+AGG	0.429428	8_1:-38501399	None:intergenic
AGGGAAATCCAAGAAATGGA+AGG	0.594356	8_1:+38500216	None:intergenic
ATGGAAAGTGAGAAAAGAAG+AGG	0.612198	8_1:+38500245	Msa1192620:CDS
CAATAACTGGTTCAGAAAGA+GGG	0.585313	8_1:+38501354	Msa1192620:intron
CAATTACAGGTGTAGTACCT+TGG	0.542531	8_1:+38502704	Msa1192620:intron
CTTTGTATCACCAGAAAATG+TGG	0.555701	8_1:+38502947	Msa1192620:CDS
GAACAACTTGATCAACAACA+TGG	0.662311	8_1:-38503195	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAATGTAATCAATTCCGTTA+GGG	-	chr8_1:38500370-38500389	None:intergenic	30.0%
TGAATGTAATCAATTCCGTT+AGG	-	chr8_1:38500371-38500390	None:intergenic	30.0%
TGATATCAAATTGTACTGCA+AGG	-	chr8_1:38500801-38500820	None:intergenic	30.0%
AGAAGGTTTCAATAATGATG+TGG	-	chr8_1:38501117-38501136	None:intergenic	30.0%
AATTTCAAAAGTTCTGCAGA+AGG	-	chr8_1:38501134-38501153	None:intergenic	30.0%
ATTGAAGTCAGTTGAAAAAC+CGG	+	chr8_1:38501154-38501173	Msa1192620:intron	30.0%
TGTAAACCATTGTCAATAAC+TGG	+	chr8_1:38501341-38501360	Msa1192620:intron	30.0%
TTATTGTTCTCCAGTAAAAG+AGG	+	chr8_1:38501557-38501576	Msa1192620:intron	30.0%
CGTTTCCGCTAATATTTATT+TGG	+	chr8_1:38501604-38501623	Msa1192620:intron	30.0%
AATAAAAATTGACACATGGG+TGG	-	chr8_1:38501663-38501682	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	38500231	38503258	38500231	ID=Msa1192620;Name=Msa1192620
chr8_1	mRNA	38500231	38503258	38500231	ID=Msa1192620-mRNA-1;Parent=Msa1192620;Name=Msa1192620-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0\|0\|0\|1\|0.5\|0.6\|5\|0\|141
chr8_1	exon	38500231	38500266	38500231	ID=Msa1192620-mRNA-1:exon:12596;Parent=Msa1192620-mRNA-1
chr8_1	exon	38501369	38501471	38501369	ID=Msa1192620-mRNA-1:exon:12597;Parent=Msa1192620-mRNA-1
chr8_1	exon	38502713	38502798	38502713	ID=Msa1192620-mRNA-1:exon:12598;Parent=Msa1192620-mRNA-1
chr8_1	exon	38502924	38503043	38502924	ID=Msa1192620-mRNA-1:exon:12599;Parent=Msa1192620-mRNA-1
chr8_1	exon	38503178	38503258	38503178	ID=Msa1192620-mRNA-1:exon:12600;Parent=Msa1192620-mRNA-1
chr8_1	CDS	38500231	38500266	38500231	ID=Msa1192620-mRNA-1:cds;Parent=Msa1192620-mRNA-1
chr8_1	CDS	38501369	38501471	38501369	ID=Msa1192620-mRNA-1:cds;Parent=Msa1192620-mRNA-1
chr8_1	CDS	38502713	38502798	38502713	ID=Msa1192620-mRNA-1:cds;Parent=Msa1192620-mRNA-1
chr8_1	CDS	38502924	38503043	38502924	ID=Msa1192620-mRNA-1:cds;Parent=Msa1192620-mRNA-1
chr8_1	CDS	38503178	38503258	38503178	ID=Msa1192620-mRNA-1:cds;Parent=Msa1192620-mRNA-1

Gene Sequence

>Msa1192620

ATGGAAGGGCCTTCATGGAAAGTGAGAAAAGAAGAGAAAGAGGGTCTTGTTCAACATAATGGAGGTCCTTTTGAGATCAAAGGAAAGCTATTTCCAAATCAAGTTCCTCTAATCACAGAAGATACATCAGAAACAGCTGGTGTAGTACCTTGGACTTTTGAGCAGAAGCTTGGTGAAGCAGTATTTATACCTGTTGGATGCCCTCACCAAGTTCGAAATCTGAAGTCATGCACAAAAGTTGCAGTAGACTTTGTATCACCAGAAAATGTGGATATATGCATGCTTTTAAGTGAAGAGTTTCGTCGCCTTCCTAAGAATCACAGGGCAAGAGAAGACAAACTTAAGATAAAAAAGATGATAATCCATGTTGTTGATCAAGTTGTTCAAGATTTGGAAGCTTTCATTAGATGCTCATCACTGGACTAA

Protein sequence

>Msa1192620

MEGPSWKVRKEEKEGLVQHNGGPFEIKGKLFPNQVPLITEDTSETAGVVPWTFEQKLGEAVFIPVGCPHQVRNLKSCTKVAVDFVSPENVDICMLLSEEFRRLPKNHRAREDKLKIKKMIIHVVDQVVQDLEAFIRCSSLD*