AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1192620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1192620 MtrunA17_Chr2g0289121 58.854 192 17 3 10 140 637 827 1.96e-61 201
Msa1192620 MtrunA17_Chr2g0289031 84.270 89 14 0 47 135 308 396 3.78e-48 159
Msa1192620 MtrunA17_Chr4g0075261 75.789 95 23 0 44 138 776 870 2.81e-45 157
Msa1192620 MtrunA17_Chr2g0289091 51.266 158 13 4 1 97 266 420 9.36e-38 132
Msa1192620 MtrunA17_Chr1g0211711 69.663 89 27 0 44 132 960 1048 2.02e-37 134
Msa1192620 MtrunA17_Chr1g0211701 65.169 89 31 0 44 132 27 115 2.32e-37 125
Msa1192620 MtrunA17_Chr5g0426961 69.663 89 27 0 44 132 744 832 8.01e-37 133
Msa1192620 MtrunA17_Chr1g0183311 68.539 89 28 0 44 132 791 879 1.37e-36 132
Msa1192620 MtrunA17_Chr7g0275771 66.279 86 29 0 47 132 839 924 5.25e-35 127
Msa1192620 MtrunA17_Chr1g0147021 62.366 93 35 0 47 139 1610 1702 1.18e-34 127
Msa1192620 MtrunA17_Chr8g0361391 41.398 186 10 3 15 141 18 163 1.72e-32 112
Msa1192620 MtrunA17_Chr5g0420361 46.970 132 54 3 1 116 648 779 2.77e-30 114
Msa1192620 MtrunA17_Chr6g0472441 65.753 73 25 0 44 116 629 701 7.90e-28 107
Msa1192620 MtrunA17_Chr4g0048531 50.000 84 42 0 48 131 1192 1275 6.05e-26 102
Msa1192620 MtrunA17_Chr2g0281051 46.429 84 45 0 48 131 870 953 1.16e-24 98.2
Msa1192620 MtrunA17_Chr1g0192011 41.304 92 54 0 44 135 872 963 1.50e-22 92.4
Msa1192620 MtrunA17_Chr1g0211671 54.386 57 26 0 76 132 17 73 8.06e-16 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1192620 AT1G11950.1 71.910 89 25 0 47 135 783 871 1.08e-41 147
Msa1192620 AT1G11950.3 71.910 89 25 0 47 135 783 871 1.08e-41 147
Msa1192620 AT3G07610.1 65.556 90 31 0 44 133 803 892 8.23e-37 133
Msa1192620 AT3G07610.3 65.556 90 31 0 44 133 825 914 8.82e-37 133
Msa1192620 AT1G62310.1 81.159 69 13 0 47 115 809 877 3.77e-34 125
Msa1192620 AT4G00990.1 53.684 95 44 0 44 138 741 835 2.88e-32 120
Msa1192620 AT1G09060.2 43.820 89 50 0 47 135 805 893 7.91e-21 87.8
Msa1192620 AT1G09060.1 43.820 89 50 0 47 135 805 893 7.91e-21 87.8
Msa1192620 AT1G09060.4 43.820 89 50 0 47 135 819 907 8.32e-21 87.8
Msa1192620 AT1G09060.3 43.820 89 50 0 47 135 819 907 8.32e-21 87.8
Msa1192620 AT4G21430.1 36.957 92 58 0 48 139 828 919 2.15e-18 80.9

Find 28 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCTTGCCCTGTGATTCTT+AGG 0.277632 8_1:-38503008 None:intergenic
GTGATTAGAGGAACTTGATT+TGG 0.307949 8_1:-38501426 None:intergenic
TGATCAAGTTGTTCAAGATT+TGG 0.356114 8_1:+38503204 Msa1192620:CDS
AAGAAATGGAAGGGCCTTCA+TGG 0.363671 8_1:+38500226 None:intergenic
GATGTATCTTCTGTGATTAG+AGG 0.363682 8_1:-38501438 None:intergenic
GAGGGTCTTGTTCAACATAA+TGG 0.371403 8_1:+38501372 Msa1192620:CDS
AGCTTTCCTTTGATCTCAAA+AGG 0.429428 8_1:-38501399 None:intergenic
TCACCTTCAGATTTCGAACT+TGG 0.433332 8_1:-38502780 None:intergenic
ACTTGGTGAGGGCATCCAAC+AGG 0.485363 8_1:-38502763 None:intergenic
GTCGCCTTCCTAAGAATCAC+AGG 0.498370 8_1:+38503000 Msa1192620:CDS
TTGCCCTGTGATTCTTAGGA+AGG 0.529013 8_1:-38503004 None:intergenic
TTTCATTAGATGCTCATCAC+TGG 0.540922 8_1:+38503231 Msa1192620:CDS
CAATTACAGGTGTAGTACCT+TGG 0.542531 8_1:+38502704 Msa1192620:intron
CTTTGTATCACCAGAAAATG+TGG 0.555701 8_1:+38502947 Msa1192620:CDS
TTCAGATTTCGAACTTGGTG+AGG 0.558607 8_1:-38502775 None:intergenic
GGCAAGAGAAGACAAACTTA+AGG 0.580172 8_1:+38503022 Msa1192620:CDS
TCAGATTTCGAACTTGGTGA+GGG 0.580542 8_1:-38502774 None:intergenic
CAATAACTGGTTCAGAAAGA+GGG 0.585313 8_1:+38501354 Msa1192620:intron
AGGGAAATCCAAGAAATGGA+AGG 0.594356 8_1:+38500216 None:intergenic
AGCTTCTGCTCAAAAGTCCA+AGG 0.599846 8_1:-38502721 None:intergenic
GAAGCAGTATTTATACCTGT+TGG 0.603645 8_1:+38502748 Msa1192620:CDS
GAAGATACATCAGAAACAGC+TGG 0.604910 8_1:+38501450 Msa1192620:CDS
TCACCAAGTTCGAAATCTGA+AGG 0.610305 8_1:+38502777 Msa1192620:CDS
ATGGAAAGTGAGAAAAGAAG+AGG 0.612198 8_1:+38500245 Msa1192620:CDS
GGGAAATCCAAGAAATGGAA+GGG 0.618012 8_1:+38500217 None:intergenic
GAACAACTTGATCAACAACA+TGG 0.662311 8_1:-38503195 None:intergenic
GGTCTTGTTCAACATAATGG+AGG 0.691225 8_1:+38501375 Msa1192620:CDS
TCGCCTTCCTAAGAATCACA+GGG 0.703131 8_1:+38503001 Msa1192620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTAATTTCTGAAAATTA+TGG + chr8_1:38500535-38500554 Msa1192620:intron 10.0%
!! TATAATAAAAATTGACACAT+GGG - chr8_1:38501666-38501685 None:intergenic 15.0%
!! ATATAATAAAAATTGACACA+TGG - chr8_1:38501667-38501686 None:intergenic 15.0%
!!! AGTAACATTTTATTTTATAG+AGG - chr8_1:38502329-38502348 None:intergenic 15.0%
!!! GTACTTTTAAACTTAAATTT+AGG - chr8_1:38502834-38502853 None:intergenic 15.0%
!!! ATTCATTTGAAATATTTGCA+AGG + chr8_1:38500589-38500608 Msa1192620:intron 20.0%
!! ATCATCCAATAAAGTAAAAA+TGG + chr8_1:38500713-38500732 Msa1192620:intron 20.0%
!! GAAAATATTCCAAAGAATTT+AGG + chr8_1:38501529-38501548 Msa1192620:intron 20.0%
!!! TAATATAATACCTCTTTTAC+TGG - chr8_1:38501570-38501589 None:intergenic 20.0%
!! ATAACCCAAATAAATATTAG+CGG - chr8_1:38501612-38501631 None:intergenic 20.0%
!!! ATATTTATTTGGGTTATGTT+TGG + chr8_1:38501615-38501634 Msa1192620:intron 20.0%
!!! TTTTTGTAACAAGGTTTATA+TGG + chr8_1:38502519-38502538 Msa1192620:intron 20.0%
!!! TTTTGTAACAAGGTTTATAT+GGG + chr8_1:38502520-38502539 Msa1192620:intron 20.0%
!! AATTAATCTAGAAACAGTTT+CGG - chr8_1:38502646-38502665 None:intergenic 20.0%
!! AAACTTAAATTTAGGTAAAG+AGG - chr8_1:38502826-38502845 None:intergenic 20.0%
!!! AGATAACTTTGCTTTATTTT+TGG + chr8_1:38503126-38503145 Msa1192620:intron 20.0%
!!! GATAACTTTGCTTTATTTTT+GGG + chr8_1:38503127-38503146 Msa1192620:intron 20.0%
!!! ATAACTTTGCTTTATTTTTG+GGG + chr8_1:38503128-38503147 Msa1192620:intron 20.0%
!!! CTTTGCTAGTTTTACTTTAT+TGG + chr8_1:38500476-38500495 Msa1192620:intron 25.0%
!!! AATCCCTTTAAAGCTATTTT+AGG + chr8_1:38500509-38500528 Msa1192620:intron 25.0%
!!! TGACCTAAAATAGCTTTAAA+GGG - chr8_1:38500515-38500534 None:intergenic 25.0%
!!! TTGACCTAAAATAGCTTTAA+AGG - chr8_1:38500516-38500535 None:intergenic 25.0%
!!! TGCAAACTAAGTTTTAATCT+TGG - chr8_1:38500644-38500663 None:intergenic 25.0%
!!! CTTTGCCATTTTTACTTTAT+TGG - chr8_1:38500721-38500740 None:intergenic 25.0%
! ATAAGTATGCCTAAATTCTT+TGG - chr8_1:38501541-38501560 None:intergenic 25.0%
! GTTTCCGCTAATATTTATTT+GGG + chr8_1:38501605-38501624 Msa1192620:intron 25.0%
!! GAAAAAATACTGTAACTTGT+CGG + chr8_1:38501727-38501746 Msa1192620:intron 25.0%
!! CAAAACCTAGAATTTAAGAT+CGG - chr8_1:38502194-38502213 None:intergenic 25.0%
!!! TACTGAGTTTTTTTGTAACA+AGG + chr8_1:38502510-38502529 Msa1192620:intron 25.0%
! CAAGAATCTTAATCAATTAC+AGG + chr8_1:38502691-38502710 Msa1192620:intron 25.0%
! TGAAATTCACATCAAAAGAA+AGG - chr8_1:38503073-38503092 None:intergenic 25.0%
! TCAAACTAAGAAAGTTGAAA+AGG + chr8_1:38503090-38503109 Msa1192620:intron 25.0%
! TTTTGTATATCTTGCCCTAA+CGG + chr8_1:38500353-38500372 Msa1192620:intron 30.0%
GAATGTAATCAATTCCGTTA+GGG - chr8_1:38500370-38500389 None:intergenic 30.0%
TGAATGTAATCAATTCCGTT+AGG - chr8_1:38500371-38500390 None:intergenic 30.0%
!! AACTTAGTTTGCATACTTTG+TGG + chr8_1:38500651-38500670 Msa1192620:intron 30.0%
!!! TTGCTCTGAGTTTTAAAACA+AGG - chr8_1:38500682-38500701 None:intergenic 30.0%
!!! TGTTTTAAAACTCAGAGCAA+AGG + chr8_1:38500682-38500701 Msa1192620:intron 30.0%
TGATATCAAATTGTACTGCA+AGG - chr8_1:38500801-38500820 None:intergenic 30.0%
! TTTTGTATATCTTGCGCTAA+CGG - chr8_1:38500844-38500863 None:intergenic 30.0%
! GAAAAGCTAGTTGATTCTAT+GGG - chr8_1:38501059-38501078 None:intergenic 30.0%
! TGAAAAGCTAGTTGATTCTA+TGG - chr8_1:38501060-38501079 None:intergenic 30.0%
AGAAGGTTTCAATAATGATG+TGG - chr8_1:38501117-38501136 None:intergenic 30.0%
AATTTCAAAAGTTCTGCAGA+AGG - chr8_1:38501134-38501153 None:intergenic 30.0%
ATTGAAGTCAGTTGAAAAAC+CGG + chr8_1:38501154-38501173 Msa1192620:intron 30.0%
!! TGAATGTTGATTTCGAACAT+CGG - chr8_1:38501253-38501272 None:intergenic 30.0%
TGTAAACCATTGTCAATAAC+TGG + chr8_1:38501341-38501360 Msa1192620:intron 30.0%
TTATTGTTCTCCAGTAAAAG+AGG + chr8_1:38501557-38501576 Msa1192620:intron 30.0%
CGTTTCCGCTAATATTTATT+TGG + chr8_1:38501604-38501623 Msa1192620:intron 30.0%
AATAAAAATTGACACATGGG+TGG - chr8_1:38501663-38501682 None:intergenic 30.0%
TTGAATTACAGTAGATCTGA+GGG - chr8_1:38501764-38501783 None:intergenic 30.0%
AGTTTCCGATCTTAAATTCT+AGG + chr8_1:38502186-38502205 Msa1192620:intron 30.0%
!! AGTTTGATGAACTGTTTCTA+CGG + chr8_1:38502372-38502391 Msa1192620:intron 30.0%
! GGTATATCATCTTTTGATGA+AGG - chr8_1:38502561-38502580 None:intergenic 30.0%
! ATGCATATATCCACATTTTC+TGG - chr8_1:38502960-38502979 None:intergenic 30.0%
CAAAAGAAAGGAAGACAAAA+AGG - chr8_1:38503061-38503080 None:intergenic 30.0%
! TGATCAAGTTGTTCAAGATT+TGG + chr8_1:38503204-38503223 Msa1192620:CDS 30.0%
! TCTTTTCTCACTTTCCATGA+AGG - chr8_1:38500243-38500262 None:intergenic 35.0%
ATGGAAAGTGAGAAAAGAAG+AGG + chr8_1:38500245-38500264 Msa1192620:CDS 35.0%
TGATACCAAATTGTACTCCA+AGG + chr8_1:38500396-38500415 Msa1192620:intron 35.0%
!!! CTGAGTTTTAAAACAAGGCT+AGG - chr8_1:38500677-38500696 None:intergenic 35.0%
ATGGAAAGTGAGAAAAGAAG+AGG - chr8_1:38500245-38500264 None:intergenic 35.0%
AGGTTTCAATAATGATGTGG+AGG - chr8_1:38501114-38501133 None:intergenic 35.0%
CTCAGAAATAGGAAAGTTAC+CGG - chr8_1:38501176-38501195 None:intergenic 35.0%
!! ACTTTCCTATTTCTGAGTAG+TGG + chr8_1:38501179-38501198 Msa1192620:intron 35.0%
GTCAAAATGGTGACTTAGTT+AGG - chr8_1:38501208-38501227 None:intergenic 35.0%
ATCAACATTCACTTCATCGA+TGG + chr8_1:38501262-38501281 Msa1192620:intron 35.0%
TCAACATTCACTTCATCGAT+GGG + chr8_1:38501263-38501282 Msa1192620:intron 35.0%
TTTAACGTTAGGTTCCCATT+TGG - chr8_1:38501293-38501312 None:intergenic 35.0%
GTGTTGCAAACTTTAACGTT+AGG - chr8_1:38501304-38501323 None:intergenic 35.0%
TCTGAACCAGTTATTGACAA+TGG - chr8_1:38501350-38501369 None:intergenic 35.0%
! TCAATAACTGGTTCAGAAAG+AGG + chr8_1:38501353-38501372 Msa1192620:intron 35.0%
! CAATAACTGGTTCAGAAAGA+GGG + chr8_1:38501354-38501373 Msa1192620:intron 35.0%
AGCTTTCCTTTGATCTCAAA+AGG - chr8_1:38501402-38501421 None:intergenic 35.0%
GTGATTAGAGGAACTTGATT+TGG - chr8_1:38501429-38501448 None:intergenic 35.0%
GATGTATCTTCTGTGATTAG+AGG - chr8_1:38501441-38501460 None:intergenic 35.0%
GTTGAATTACAGTAGATCTG+AGG - chr8_1:38501765-38501784 None:intergenic 35.0%
GTGTAAGAGACATGTATAGT+TGG - chr8_1:38501893-38501912 None:intergenic 35.0%
!!! TTTCTTTTGGTGCTTTAGGT+TGG + chr8_1:38502128-38502147 Msa1192620:intron 35.0%
!! GTTTGATGAACTGTTTCTAC+GGG + chr8_1:38502373-38502392 Msa1192620:intron 35.0%
AAAACTATCCTGCCACATAA+GGG + chr8_1:38502581-38502600 Msa1192620:intron 35.0%
GAAGCAGTATTTATACCTGT+TGG + chr8_1:38502748-38502767 Msa1192620:CDS 35.0%
CTTTGTATCACCAGAAAATG+TGG + chr8_1:38502947-38502966 Msa1192620:CDS 35.0%
GAACAACTTGATCAACAACA+TGG - chr8_1:38503198-38503217 None:intergenic 35.0%
TTTCATTAGATGCTCATCAC+TGG + chr8_1:38503231-38503250 Msa1192620:CDS 35.0%
TGACTCCTTGGAGTACAATT+TGG - chr8_1:38500404-38500423 None:intergenic 40.0%
AATTGTACTCCAAGGAGTCA+TGG + chr8_1:38500404-38500423 Msa1192620:intron 40.0%
AGATGTTAACCATGACTCCT+TGG - chr8_1:38500781-38500800 None:intergenic 40.0%
TTACCGCTGTAACTTTCATG+CGG + chr8_1:38500436-38500455 Msa1192620:intron 40.0%
TTACCGCTGTAACTTTCATG+CGG - chr8_1:38500436-38500455 None:intergenic 40.0%
AATTGTACTGCAAGGAGTCA+TGG - chr8_1:38500793-38500812 None:intergenic 40.0%
! TCTTTTCTCACTTTCCATGC+AGG + chr8_1:38500954-38500973 Msa1192620:intron 40.0%
GGGAAATCCAACAAATGGAA+GGG - chr8_1:38500980-38500999 None:intergenic 40.0%
AGGGAAATCCAACAAATGGA+AGG - chr8_1:38500981-38501000 None:intergenic 40.0%
! TTCCATTTGTTGGATTTCCC+TGG + chr8_1:38500980-38500999 Msa1192620:intron 40.0%
ACAAGCGGATGATAGAAGAT+AGG - chr8_1:38501036-38501055 None:intergenic 40.0%
! AGTTGATTCTATGGGACAAG+CGG - chr8_1:38501051-38501070 None:intergenic 40.0%
!! GAGGGTCTTGTTCAACATAA+TGG + chr8_1:38501372-38501391 Msa1192620:CDS 40.0%
!! GGTCTTGTTCAACATAATGG+AGG + chr8_1:38501375-38501394 Msa1192620:CDS 40.0%
GAAGATACATCAGAAACAGC+TGG + chr8_1:38501450-38501469 Msa1192620:CDS 40.0%
ATGGGTGGTATGGCAATTAA+AGG - chr8_1:38501648-38501667 None:intergenic 40.0%
AAATTGACACATGGGTGGTA+TGG - chr8_1:38501658-38501677 None:intergenic 40.0%
TAGATCTGAGGGCAATGAAA+GGG - chr8_1:38501753-38501772 None:intergenic 40.0%
CATGTATAGTTGGAGAGGAA+GGG - chr8_1:38501883-38501902 None:intergenic 40.0%
ACATGTATAGTTGGAGAGGA+AGG - chr8_1:38501884-38501903 None:intergenic 40.0%
AGAGACATGTATAGTTGGAG+AGG - chr8_1:38501888-38501907 None:intergenic 40.0%
ATCGTTGAAAGAGGAAAGAG+TGG - chr8_1:38502008-38502027 None:intergenic 40.0%
TTAACGAGTTGTTCTGCGAT+AGG - chr8_1:38502034-38502053 None:intergenic 40.0%
!! GTTTCAGGTCGTGTTTCTTT+TGG + chr8_1:38502115-38502134 Msa1192620:intron 40.0%
!!! CGTGTTTCTTTTGGTGCTTT+AGG + chr8_1:38502124-38502143 Msa1192620:intron 40.0%
GGTTCTTCTGAATTGTGAGA+AGG + chr8_1:38502394-38502413 Msa1192620:intron 40.0%
TCTTCTGAATTGTGAGAAGG+AGG + chr8_1:38502397-38502416 Msa1192620:intron 40.0%
! CTTATGTGGCAGGATAGTTT+TGG - chr8_1:38502582-38502601 None:intergenic 40.0%
CAAAACTATCCTGCCACATA+AGG + chr8_1:38502580-38502599 Msa1192620:intron 40.0%
AAACTATCCTGCCACATAAG+GGG + chr8_1:38502582-38502601 Msa1192620:intron 40.0%
! AAGAGTGTGTTTCCAGCTAT+GGG + chr8_1:38502610-38502629 Msa1192620:intron 40.0%
CAATTACAGGTGTAGTACCT+TGG + chr8_1:38502704-38502723 Msa1192620:intron 40.0%
! TCAGATTTCGAACTTGGTGA+GGG - chr8_1:38502777-38502796 None:intergenic 40.0%
! TTCAGATTTCGAACTTGGTG+AGG - chr8_1:38502778-38502797 None:intergenic 40.0%
TCACCAAGTTCGAAATCTGA+AGG + chr8_1:38502777-38502796 Msa1192620:CDS 40.0%
TCACCTTCAGATTTCGAACT+TGG - chr8_1:38502783-38502802 None:intergenic 40.0%
GGCAAGAGAAGACAAACTTA+AGG + chr8_1:38503022-38503041 Msa1192620:CDS 40.0%
ATGTATGCCAGCAGATGCAA+TGG - chr8_1:38501012-38501031 None:intergenic 45.0%
GGAAGCCACTACTCAGAAAT+AGG - chr8_1:38501187-38501206 None:intergenic 45.0%
!! TAAGTCACCATTTTGACCCC+AGG + chr8_1:38501211-38501230 Msa1192620:intron 45.0%
!! ACCATTTTGACCCCAGGAAT+CGG + chr8_1:38501217-38501236 Msa1192620:intron 45.0%
!!! GGAGGTCCTTTTGAGATCAA+AGG + chr8_1:38501393-38501412 Msa1192620:CDS 45.0%
AGAAACAGCTGGTGCACTTT+GGG + chr8_1:38501461-38501480 Msa1192620:intron 45.0%
GTAGATCTGAGGGCAATGAA+AGG - chr8_1:38501754-38501773 None:intergenic 45.0%
TGAGGTTGGAGAAACAAACG+AGG - chr8_1:38501853-38501872 None:intergenic 45.0%
GGAGTGAAGGAATTGAGGAA+TGG - chr8_1:38501942-38501961 None:intergenic 45.0%
ACGATGGAGTGAAGGAATTG+AGG - chr8_1:38501947-38501966 None:intergenic 45.0%
GAAAAGTGACGATGGAGTGA+AGG - chr8_1:38501955-38501974 None:intergenic 45.0%
GAGGTGAAACAAGGAACTGA+GGG - chr8_1:38501979-38501998 None:intergenic 45.0%
AGAGGTGAAACAAGGAACTG+AGG - chr8_1:38501980-38501999 None:intergenic 45.0%
GATAGGTGCATCGTTGAAAG+AGG - chr8_1:38502017-38502036 None:intergenic 45.0%
ACAAATTCGCGGCTAACTGA+GGG - chr8_1:38502088-38502107 None:intergenic 45.0%
AAACCCTAGCGACAAATTCG+CGG - chr8_1:38502099-38502118 None:intergenic 45.0%
GAATTTGTCGCTAGGGTTTC+AGG + chr8_1:38502100-38502119 Msa1192620:intron 45.0%
! CAAGAGTGTGTTTCCAGCTA+TGG + chr8_1:38502609-38502628 Msa1192620:intron 45.0%
AGCTTCTGCTCAAAAGTCCA+AGG - chr8_1:38502724-38502743 None:intergenic 45.0%
! TGGACTTTTGAGCAGAAGCT+TGG + chr8_1:38502724-38502743 Msa1192620:CDS 45.0%
TCGCCTTCCTAAGAATCACA+GGG + chr8_1:38503001-38503020 Msa1192620:CDS 45.0%
TTGCCCTGTGATTCTTAGGA+AGG - chr8_1:38503007-38503026 None:intergenic 45.0%
TCTCTTGCCCTGTGATTCTT+AGG - chr8_1:38503011-38503030 None:intergenic 45.0%
ACGCCGCATGAAAGTTACAG+CGG - chr8_1:38500755-38500774 None:intergenic 50.0%
ACGCCGCATGAAAGTTACAG+CGG + chr8_1:38500755-38500774 Msa1192620:intron 50.0%
AACAAATGGAAGGGCCTGCA+TGG - chr8_1:38500971-38500990 None:intergenic 50.0%
ATGCAGGCCCTTCCATTTGT+TGG + chr8_1:38500970-38500989 Msa1192620:intron 50.0%
CGCCAGGGAAATCCAACAAA+TGG - chr8_1:38500985-38501004 None:intergenic 50.0%
AGATGCAATGGTAGACGCCA+GGG - chr8_1:38501000-38501019 None:intergenic 50.0%
! ACCGATTCCTGGGGTCAAAA+TGG - chr8_1:38501221-38501240 None:intergenic 50.0%
TGACCCCAGGAATCGGTATT+TGG + chr8_1:38501224-38501243 Msa1192620:intron 50.0%
GACCCCAGGAATCGGTATTT+GGG + chr8_1:38501225-38501244 Msa1192620:intron 50.0%
ACCCCAGGAATCGGTATTTG+GGG + chr8_1:38501226-38501245 Msa1192620:intron 50.0%
!! TCATCGATGGGAGCACCAAA+TGG + chr8_1:38501275-38501294 Msa1192620:intron 50.0%
!! CATCGATGGGAGCACCAAAT+GGG + chr8_1:38501276-38501295 Msa1192620:intron 50.0%
CAGAAACAGCTGGTGCACTT+TGG + chr8_1:38501460-38501479 Msa1192620:intron 50.0%
!! CCTTGGTTTGTACGACCGAA+GGG - chr8_1:38501818-38501837 None:intergenic 50.0%
GGAAGGGTTAGAGATGAGGT+TGG - chr8_1:38501867-38501886 None:intergenic 50.0%
GAGAGGAAGGGTTAGAGATG+AGG - chr8_1:38501871-38501890 None:intergenic 50.0%
CTGAGGGAGAAAAGTGACGA+TGG - chr8_1:38501963-38501982 None:intergenic 50.0%
TGGCGATGAGAGGTGAAACA+AGG - chr8_1:38501988-38502007 None:intergenic 50.0%
GACAAATTCGCGGCTAACTG+AGG - chr8_1:38502089-38502108 None:intergenic 50.0%
TTAGCCGCGAATTTGTCGCT+AGG + chr8_1:38502092-38502111 Msa1192620:intron 50.0%
TAGCCGCGAATTTGTCGCTA+GGG + chr8_1:38502093-38502112 Msa1192620:intron 50.0%
GTGAGAAGGAGGATGAGAAG+AGG + chr8_1:38502408-38502427 Msa1192620:intron 50.0%
AGGATGAGAAGAGGAGTGAG+CGG + chr8_1:38502417-38502436 Msa1192620:intron 50.0%
ACTCTTGCACACCCCTTATG+TGG - chr8_1:38502596-38502615 None:intergenic 50.0%
GGTAAGTGAACACCCATAGC+TGG - chr8_1:38502625-38502644 None:intergenic 50.0%
GTCGCCTTCCTAAGAATCAC+AGG + chr8_1:38503000-38503019 Msa1192620:CDS 50.0%
CAGATGCAATGGTAGACGCC+AGG - chr8_1:38501001-38501020 None:intergenic 55.0%
GCGTCTACCATTGCATCTGC+TGG + chr8_1:38501002-38501021 Msa1192620:intron 55.0%
!! CCCCCAAATACCGATTCCTG+GGG - chr8_1:38501230-38501249 None:intergenic 55.0%
CCCCAGGAATCGGTATTTGG+GGG + chr8_1:38501227-38501246 Msa1192620:intron 55.0%
!! GCCCCCAAATACCGATTCCT+GGG - chr8_1:38501231-38501250 None:intergenic 55.0%
GGTTTGTACGACCGAAGGGA+CGG - chr8_1:38501814-38501833 None:intergenic 55.0%
CCCTTCGGTCGTACAAACCA+AGG + chr8_1:38501815-38501834 Msa1192620:intron 55.0%
!! GCCTTGGTTTGTACGACCGA+AGG - chr8_1:38501819-38501838 None:intergenic 55.0%
GAGGAAAGAGTGGCGATGAG+AGG - chr8_1:38501998-38502017 None:intergenic 55.0%
CGTAGGAAGCAGAGAGGTTG+AGG - chr8_1:38502063-38502082 None:intergenic 55.0%
AGGGATCGTAGGAAGCAGAG+AGG - chr8_1:38502069-38502088 None:intergenic 55.0%
ATGAGAAGAGGAGTGAGCGG+CGG + chr8_1:38502420-38502439 Msa1192620:intron 55.0%
TTGCACACCCCTTATGTGGC+AGG - chr8_1:38502592-38502611 None:intergenic 55.0%
!! ACTTGGTGAGGGCATCCAAC+AGG - chr8_1:38502766-38502785 None:intergenic 55.0%
!! GGCCCCCAAATACCGATTCC+TGG - chr8_1:38501232-38501251 None:intergenic 60.0%
GGTGTCAGCAGCAGCGTTTG+TGG - chr8_1:38501787-38501806 None:intergenic 60.0%
CGAGGCAGATTGTGCTGCCT+TGG - chr8_1:38501835-38501854 None:intergenic 60.0%
GCGGCTAACTGAGGGATCGT+AGG - chr8_1:38502080-38502099 None:intergenic 60.0%
! ACGGTGACGGTGAAGGAGAG+AGG + chr8_1:38502443-38502462 Msa1192620:intron 60.0%
! CGGTGACGGTGAAGGAGAGA+GGG + chr8_1:38502444-38502463 Msa1192620:intron 60.0%
! GGTGACGGTGAAGGAGAGAG+GGG + chr8_1:38502445-38502464 Msa1192620:intron 60.0%
GTGACGGTGAAGGAGAGAGG+GGG + chr8_1:38502446-38502465 Msa1192620:intron 60.0%
AAGGAGAGAGGGGGCGATGA+TGG + chr8_1:38502455-38502474 Msa1192620:intron 60.0%
TGACACCGCTGCCGTCCCTT+CGG + chr8_1:38501800-38501819 Msa1192620:intron 65.0%
TACGACCGAAGGGACGGCAG+CGG - chr8_1:38501808-38501827 None:intergenic 65.0%
GAAGAGGAGTGAGCGGCGGA+CGG + chr8_1:38502424-38502443 Msa1192620:intron 65.0%
! GAGAGAGGGGGCGATGATGG+TGG + chr8_1:38502458-38502477 Msa1192620:intron 65.0%
!! AGAGGGGGCGATGATGGTGG+AGG + chr8_1:38502461-38502480 Msa1192620:intron 65.0%
GAGTGAGCGGCGGACGGTGA+CGG + chr8_1:38502430-38502449 Msa1192620:intron 70.0%
! GCGGCGGACGGTGACGGTGA+AGG + chr8_1:38502436-38502455 Msa1192620:intron 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 38500231 38503258 38500231 ID=Msa1192620;Name=Msa1192620
chr8_1 mRNA 38500231 38503258 38500231 ID=Msa1192620-mRNA-1;Parent=Msa1192620;Name=Msa1192620-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|0|0|1|0.5|0.6|5|0|141
chr8_1 exon 38500231 38500266 38500231 ID=Msa1192620-mRNA-1:exon:12596;Parent=Msa1192620-mRNA-1
chr8_1 exon 38501369 38501471 38501369 ID=Msa1192620-mRNA-1:exon:12597;Parent=Msa1192620-mRNA-1
chr8_1 exon 38502713 38502798 38502713 ID=Msa1192620-mRNA-1:exon:12598;Parent=Msa1192620-mRNA-1
chr8_1 exon 38502924 38503043 38502924 ID=Msa1192620-mRNA-1:exon:12599;Parent=Msa1192620-mRNA-1
chr8_1 exon 38503178 38503258 38503178 ID=Msa1192620-mRNA-1:exon:12600;Parent=Msa1192620-mRNA-1
chr8_1 CDS 38500231 38500266 38500231 ID=Msa1192620-mRNA-1:cds;Parent=Msa1192620-mRNA-1
chr8_1 CDS 38501369 38501471 38501369 ID=Msa1192620-mRNA-1:cds;Parent=Msa1192620-mRNA-1
chr8_1 CDS 38502713 38502798 38502713 ID=Msa1192620-mRNA-1:cds;Parent=Msa1192620-mRNA-1
chr8_1 CDS 38502924 38503043 38502924 ID=Msa1192620-mRNA-1:cds;Parent=Msa1192620-mRNA-1
chr8_1 CDS 38503178 38503258 38503178 ID=Msa1192620-mRNA-1:cds;Parent=Msa1192620-mRNA-1
Gene Sequence

>Msa1192620

ATGGAAGGGCCTTCATGGAAAGTGAGAAAAGAAGAGAAAGAGGGTCTTGTTCAACATAATGGAGGTCCTTTTGAGATCAAAGGAAAGCTATTTCCAAATCAAGTTCCTCTAATCACAGAAGATACATCAGAAACAGCTGGTGTAGTACCTTGGACTTTTGAGCAGAAGCTTGGTGAAGCAGTATTTATACCTGTTGGATGCCCTCACCAAGTTCGAAATCTGAAGTCATGCACAAAAGTTGCAGTAGACTTTGTATCACCAGAAAATGTGGATATATGCATGCTTTTAAGTGAAGAGTTTCGTCGCCTTCCTAAGAATCACAGGGCAAGAGAAGACAAACTTAAGATAAAAAAGATGATAATCCATGTTGTTGATCAAGTTGTTCAAGATTTGGAAGCTTTCATTAGATGCTCATCACTGGACTAA
Protein sequence

>Msa1192620

MEGPSWKVRKEEKEGLVQHNGGPFEIKGKLFPNQVPLITEDTSETAGVVPWTFEQKLGEAVFIPVGCPHQVRNLKSCTKVAVDFVSPENVDICMLLSEEFRRLPKNHRAREDKLKIKKMIIHVVDQVVQDLEAFIRCSSLD*