AlfalfaGEDB | Msa1193470

M. sativa cultivar zhongmu-4 / Msa1193470

KEGG: -
GO: -
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1193470	XP_013445934.1	60.714	364	45	8	1	358	1	272	3.02e-135	396

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1193470	sp\|Q9FNN6\|SRM1_ARATH	46.743	261	103	8	11	237	12	270	5.10e-59	195

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa1193470	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1193470	MtrunA17_Chr8g0365011	58.777	376	45	9	1	358	1	284	1.58e-135	387
Msa1193470	MtrunA17_Chr1g0162081	49.495	297	88	9	1	265	3	269	2.56e-74	232
Msa1193470	MtrunA17_Chr8g0364741	71.875	128	24	3	1	117	1	127	1.11e-54	176
Msa1193470	MtrunA17_Chr4g0062741	42.727	220	76	6	11	182	8	225	1.81e-47	162
Msa1193470	MtrunA17_Chr1g0210471	51.462	171	70	2	10	169	23	191	9.97e-47	159
Msa1193470	MtrunA17_Chr5g0429521	42.347	196	96	5	11	192	29	221	6.07e-43	151
Msa1193470	MtrunA17_Chr3g0104071	44.751	181	79	4	6	169	38	214	1.48e-42	150
Msa1193470	MtrunA17_Chr5g0436501	46.746	169	81	2	10	169	26	194	1.07e-40	144
Msa1193470	MtrunA17_Chr8g0364731	54.601	163	42	3	109	261	10	150	1.59e-40	141
Msa1193470	MtrunA17_Chr8g0364731	53.061	98	38	2	261	358	95	184	2.85e-21	90.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1193470	AT5G08520.1	46.743	261	103	8	11	237	12	270	5.18e-60	195
Msa1193470	AT5G23650.1	33.875	369	162	12	11	345	13	333	3.12e-43	153
Msa1193470	AT5G04760.1	43.878	196	100	4	8	196	3	195	3.22e-42	147
Msa1193470	AT2G38090.1	43.316	187	81	4	6	169	24	208	6.47e-42	148
Msa1193470	AT1G49010.1	43.902	205	75	6	11	177	8	210	7.57e-42	149
Msa1193470	AT5G58900.1	42.373	177	82	4	11	169	34	208	1.25e-40	145
Msa1193470	AT3G11280.2	45.732	164	76	5	11	166	33	191	2.69e-38	138
Msa1193470	AT3G11280.1	45.732	164	76	5	11	166	33	191	2.69e-38	138
Msa1193470	AT5G05790.2	41.111	180	81	3	7	169	27	198	2.80e-37	135
Msa1193470	AT5G05790.1	41.111	180	81	3	7	169	27	198	2.80e-37	135

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Find 112 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCCAGCACATGGGAT+TGG	0.478560	8_1:-39818782	None:intergenic
AAAATTGCGGCTGATGTGCC+CGG	0.461117	8_1:+39817876	Msa1193470:CDS
AAACCTCAAGGACCAATTAC+CGG	0.466468	8_1:+39818611	Msa1193470:CDS
AAACTCCAAGTCCAGAAAGT+GGG	0.566030	8_1:-39818970	None:intergenic
AAAGAATCATAATCTGGCAG+AGG	0.587497	8_1:-39817975	None:intergenic
AAAGTTCTGGTACCAACAGA+TGG	0.539373	8_1:-39818683	None:intergenic
AAATTGCGGCTGATGTGCCC+GGG	0.599032	8_1:+39817877	Msa1193470:CDS
AAATTTCTAGTTCCAACAGA+TGG	0.578638	8_1:-39818749	None:intergenic
AAATTTCTGGTTCCAGAAGG+CGG	0.568201	8_1:-39818932	None:intergenic
AACAGCATCCTCGGGATGAT+TGG	0.418808	8_1:-39817841	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTAATTAAGGTGAAGCTTT+AGG	+	chr8_1:39818197-39818216	Msa1193470:intron	30.0%
CTAATTAAGGTGAAGCTTTA+GGG	+	chr8_1:39818198-39818217	Msa1193470:intron	30.0%
CAGAACTTTAAATAATCCTC+TGG	+	chr8_1:39818697-39818716	Msa1193470:CDS	30.0%
TCTGTTGGAACTAGAAATTT+AGG	+	chr8_1:39818752-39818771	Msa1193470:CDS	30.0%
TGGATGATCATCTAAATTTC+TGG	-	chr8_1:39818948-39818967	None:intergenic	30.0%
ACTAATTAAGGTGAAGCTTT+AGG	+	chr8_1:39818197-39818216	Msa1193470:intron	30.0%
CTAATTAAGGTGAAGCTTTA+GGG	+	chr8_1:39818198-39818217	Msa1193470:intron	30.0%
CAGAACTTTAAATAATCCTC+TGG	+	chr8_1:39818697-39818716	Msa1193470:CDS	30.0%
TCTGTTGGAACTAGAAATTT+AGG	+	chr8_1:39818752-39818771	Msa1193470:CDS	30.0%
TGGATGATCATCTAAATTTC+TGG	-	chr8_1:39818948-39818967	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	39817771	39819180	39817771	ID=Msa1193470;Name=Msa1193470
chr8_1	mRNA	39817771	39819180	39817771	ID=Msa1193470-mRNA-1;Parent=Msa1193470;Name=Msa1193470-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|0\|0\|1\|1\|1\|2\|0\|358
chr8_1	exon	39817771	39818093	39817771	ID=Msa1193470-mRNA-1:exon:13010;Parent=Msa1193470-mRNA-1
chr8_1	exon	39818427	39819180	39818427	ID=Msa1193470-mRNA-1:exon:13011;Parent=Msa1193470-mRNA-1
chr8_1	CDS	39817771	39818093	39817771	ID=Msa1193470-mRNA-1:cds;Parent=Msa1193470-mRNA-1
chr8_1	CDS	39818427	39819180	39818427	ID=Msa1193470-mRNA-1:cds;Parent=Msa1193470-mRNA-1

Gene Sequence

>Msa1193470

ATGGATGAAGTGGGTAGTAGAAGCTATGAGTGGAGCAGCGAGCAGAATAAATTGTTCGAAAATGCATTGGCCAATCATCCCGAGGATGCTGTTGATCGATGGGAGAAAATTGCGGCTGATGTGCCCGGGAAAACTTTAGAAGAGATTAAACATCACTATGAGATTTTGGTGTATGATATCCACAACATTGAATCTGGTTTTGTGCCTCTGCCAGATTATGATTCTTTTTCAAAGAGCTCAACAAAGTGTGCTGGTGAAAGAGGAGCAGTGAAAAAGGGAACTAGGGCTTCCGGTTCTTATCATTGGACAGAAGACGAACACAGGTTATTTCTTATGGGCGTGGAGAAGTATGGAAAGGGTAAATGGCGAAAAATATCAGAGAATTATGTGGTGACAAGAACACATACACAAGTAGCAAGTCATGCTCAGAAATACTTCAAAGGTCTGAATTCCACGAAAGAGAAGAAAGAAAGAAGGCGATCCAGAATACACGATGTCGCCTATGTCAAACCTCAAGGACCAATTACCGGTCAAGCAAGCAATTCTGCAAGACAATCAGCCACACAAACTCCTCAAGCTCCATCTGTTGGTACCAGAACTTTAAATAATCCTCTGGCTCCACCTGCCGGAATGTATGCTGCTTCGCCATCTGTTGGAACTAGAAATTTAGGTAATCCTCCAATCCCATGTGCTGGAGTTTTCGCTCGTCCTAGAGAGGACCAACCTATAGAAGGACTGGTTGTATCCGAAGTTGGCACTCCAGGAATTCTGACTGCTCCCGGAGTTTATGCTCCTCAAGCTCCACCTACTGAAATGTATGTTGCGGCCCCGCCTTCTGGAACCAGAAATTTAGATGATCATCCAGCCCCACTTTCTGGACTTGGAGTTTATGATGTGCCTTGGATCGGGCAACCTATAGGAAGACGGGTTGTATCTGCTTTCGGCGCTGCAGGGATTCCTTCTGCTCCCGGACACATGGCTTATGGTATTGGACCAGTTTCTTGGACAAATATGCCAGGGGTACCAATGAACTTGGGTCCTATGACATTTCCCATGCAAAATACATTTGCTCACTAA

Protein sequence

>Msa1193470

MDEVGSRSYEWSSEQNKLFENALANHPEDAVDRWEKIAADVPGKTLEEIKHHYEILVYDIHNIESGFVPLPDYDSFSKSSTKCAGERGAVKKGTRASGSYHWTEDEHRLFLMGVEKYGKGKWRKISENYVVTRTHTQVASHAQKYFKGLNSTKEKKERRRSRIHDVAYVKPQGPITGQASNSARQSATQTPQAPSVGTRTLNNPLAPPAGMYAASPSVGTRNLGNPPIPCAGVFARPREDQPIEGLVVSEVGTPGILTAPGVYAPQAPPTEMYVAAPPSGTRNLDDHPAPLSGLGVYDVPWIGQPIGRRVVSAFGAAGIPSAPGHMAYGIGPVSWTNMPGVPMNLGPMTFPMQNTFAH*