Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1193470 | XP_013445934.1 | 60.714 | 364 | 45 | 8 | 1 | 358 | 1 | 272 | 3.02e-135 | 396 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1193470 | sp|Q9FNN6|SRM1_ARATH | 46.743 | 261 | 103 | 8 | 11 | 237 | 12 | 270 | 5.10e-59 | 195 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa1193470 | TF | MYB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1193470 | MtrunA17_Chr8g0365011 | 58.777 | 376 | 45 | 9 | 1 | 358 | 1 | 284 | 1.58e-135 | 387 |
| Msa1193470 | MtrunA17_Chr1g0162081 | 49.495 | 297 | 88 | 9 | 1 | 265 | 3 | 269 | 2.56e-74 | 232 |
| Msa1193470 | MtrunA17_Chr8g0364741 | 71.875 | 128 | 24 | 3 | 1 | 117 | 1 | 127 | 1.11e-54 | 176 |
| Msa1193470 | MtrunA17_Chr4g0062741 | 42.727 | 220 | 76 | 6 | 11 | 182 | 8 | 225 | 1.81e-47 | 162 |
| Msa1193470 | MtrunA17_Chr1g0210471 | 51.462 | 171 | 70 | 2 | 10 | 169 | 23 | 191 | 9.97e-47 | 159 |
| Msa1193470 | MtrunA17_Chr5g0429521 | 42.347 | 196 | 96 | 5 | 11 | 192 | 29 | 221 | 6.07e-43 | 151 |
| Msa1193470 | MtrunA17_Chr3g0104071 | 44.751 | 181 | 79 | 4 | 6 | 169 | 38 | 214 | 1.48e-42 | 150 |
| Msa1193470 | MtrunA17_Chr5g0436501 | 46.746 | 169 | 81 | 2 | 10 | 169 | 26 | 194 | 1.07e-40 | 144 |
| Msa1193470 | MtrunA17_Chr8g0364731 | 54.601 | 163 | 42 | 3 | 109 | 261 | 10 | 150 | 1.59e-40 | 141 |
| Msa1193470 | MtrunA17_Chr8g0364731 | 53.061 | 98 | 38 | 2 | 261 | 358 | 95 | 184 | 2.85e-21 | 90.1 |
| Msa1193470 | MtrunA17_Chr7g0241761 | 43.333 | 180 | 82 | 4 | 10 | 172 | 34 | 210 | 5.37e-40 | 143 |
| Msa1193470 | MtrunA17_Chr5g0432921 | 43.976 | 166 | 80 | 8 | 7 | 164 | 17 | 177 | 3.75e-30 | 115 |
| Msa1193470 | MtrunA17_Chr5g0432941 | 41.358 | 162 | 89 | 6 | 7 | 164 | 18 | 177 | 4.12e-28 | 109 |
| Msa1193470 | MtrunA17_Chr5g0440731 | 44.737 | 114 | 50 | 3 | 99 | 211 | 104 | 205 | 2.77e-23 | 98.2 |
| Msa1193470 | MtrunA17_Chr5g0440741 | 45.536 | 112 | 48 | 3 | 101 | 211 | 101 | 200 | 7.27e-23 | 97.1 |
| Msa1193470 | MtrunA17_Chr5g0409841 | 42.149 | 121 | 55 | 3 | 91 | 211 | 85 | 190 | 3.61e-21 | 90.9 |
| Msa1193470 | MtrunA17_Chr1g0155181 | 57.353 | 68 | 29 | 0 | 6 | 73 | 2 | 69 | 3.16e-20 | 84.0 |
| Msa1193470 | MtrunA17_Chr2g0331031 | 45.545 | 101 | 52 | 2 | 67 | 167 | 77 | 174 | 1.66e-19 | 88.6 |
| Msa1193470 | MtrunA17_Chr4g0055931 | 44.915 | 118 | 53 | 4 | 74 | 190 | 78 | 184 | 2.53e-19 | 87.4 |
| Msa1193470 | MtrunA17_Chr6g0488471 | 63.636 | 66 | 22 | 1 | 102 | 167 | 99 | 162 | 4.25e-19 | 86.3 |
| Msa1193470 | MtrunA17_Chr3g0144631 | 53.846 | 65 | 30 | 0 | 11 | 75 | 16 | 80 | 1.75e-18 | 79.3 |
| Msa1193470 | MtrunA17_Chr8g0389241 | 59.091 | 66 | 24 | 1 | 102 | 167 | 107 | 169 | 2.30e-18 | 84.0 |
| Msa1193470 | MtrunA17_Chr3g0141601 | 56.061 | 66 | 29 | 0 | 8 | 73 | 4 | 69 | 3.43e-18 | 78.6 |
| Msa1193470 | MtrunA17_Chr5g0404101 | 53.247 | 77 | 33 | 1 | 8 | 84 | 16 | 89 | 7.62e-18 | 77.8 |
| Msa1193470 | MtrunA17_Chr4g0059701 | 75.556 | 45 | 11 | 0 | 102 | 146 | 86 | 130 | 1.26e-16 | 79.3 |
| Msa1193470 | MtrunA17_Chr3g0092621 | 48.780 | 82 | 35 | 2 | 102 | 178 | 86 | 165 | 1.77e-16 | 76.6 |
| Msa1193470 | MtrunA17_Chr1g0192061 | 59.701 | 67 | 25 | 2 | 98 | 163 | 59 | 124 | 3.67e-16 | 75.9 |
| Msa1193470 | MtrunA17_Chr5g0415191 | 71.111 | 45 | 13 | 0 | 102 | 146 | 104 | 148 | 6.97e-16 | 77.4 |
| Msa1193470 | MtrunA17_Chr6g0449111 | 52.174 | 69 | 33 | 0 | 5 | 73 | 4 | 72 | 7.49e-16 | 72.0 |
| Msa1193470 | MtrunA17_Chr3g0135671 | 51.389 | 72 | 32 | 2 | 102 | 171 | 93 | 163 | 2.23e-15 | 74.7 |
| Msa1193470 | MtrunA17_Chr5g0409831 | 65.217 | 46 | 16 | 0 | 101 | 146 | 78 | 123 | 4.20e-15 | 73.9 |
| Msa1193470 | MtrunA17_Chr7g0255841 | 54.545 | 66 | 30 | 0 | 14 | 79 | 15 | 80 | 7.16e-15 | 69.7 |
| Msa1193470 | MtrunA17_Chr6g0452791 | 68.889 | 45 | 14 | 0 | 102 | 146 | 82 | 126 | 3.58e-14 | 70.1 |
| Msa1193470 | MtrunA17_Chr8g0373131 | 44.286 | 70 | 38 | 1 | 11 | 80 | 5 | 73 | 3.88e-14 | 67.0 |
| Msa1193470 | MtrunA17_Chr8g0373111 | 44.928 | 69 | 37 | 1 | 11 | 79 | 5 | 72 | 4.66e-14 | 66.6 |
| Msa1193470 | MtrunA17_Chr8g0373121 | 44.928 | 69 | 37 | 1 | 11 | 79 | 5 | 72 | 4.66e-14 | 66.6 |
| Msa1193470 | MtrunA17_Chr8g0370131 | 38.542 | 96 | 46 | 1 | 102 | 197 | 105 | 187 | 2.48e-13 | 68.6 |
| Msa1193470 | MtrunA17_Chr5g0404301 | 50.820 | 61 | 29 | 1 | 11 | 71 | 4 | 63 | 7.19e-13 | 63.2 |
| Msa1193470 | MtrunA17_Chr3g0081631 | 49.275 | 69 | 34 | 1 | 6 | 73 | 5 | 73 | 9.04e-13 | 63.5 |
| Msa1193470 | MtrunA17_Chr3g0141641 | 44.444 | 63 | 35 | 0 | 11 | 73 | 3 | 65 | 2.66e-12 | 62.4 |
| Msa1193470 | MtrunA17_Chr3g0113121 | 36.232 | 138 | 74 | 4 | 50 | 174 | 38 | 174 | 4.03e-12 | 65.1 |
| Msa1193470 | MtrunA17_Chr8g0373101 | 44.262 | 61 | 33 | 1 | 11 | 71 | 5 | 64 | 3.06e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1193470 | AT5G08520.1 | 46.743 | 261 | 103 | 8 | 11 | 237 | 12 | 270 | 5.18e-60 | 195 |
| Msa1193470 | AT5G23650.1 | 33.875 | 369 | 162 | 12 | 11 | 345 | 13 | 333 | 3.12e-43 | 153 |
| Msa1193470 | AT5G04760.1 | 43.878 | 196 | 100 | 4 | 8 | 196 | 3 | 195 | 3.22e-42 | 147 |
| Msa1193470 | AT2G38090.1 | 43.316 | 187 | 81 | 4 | 6 | 169 | 24 | 208 | 6.47e-42 | 148 |
| Msa1193470 | AT1G49010.1 | 43.902 | 205 | 75 | 6 | 11 | 177 | 8 | 210 | 7.57e-42 | 149 |
| Msa1193470 | AT5G58900.1 | 42.373 | 177 | 82 | 4 | 11 | 169 | 34 | 208 | 1.25e-40 | 145 |
| Msa1193470 | AT3G11280.2 | 45.732 | 164 | 76 | 5 | 11 | 166 | 33 | 191 | 2.69e-38 | 138 |
| Msa1193470 | AT3G11280.1 | 45.732 | 164 | 76 | 5 | 11 | 166 | 33 | 191 | 2.69e-38 | 138 |
| Msa1193470 | AT5G05790.2 | 41.111 | 180 | 81 | 3 | 7 | 169 | 27 | 198 | 2.80e-37 | 135 |
| Msa1193470 | AT5G05790.1 | 41.111 | 180 | 81 | 3 | 7 | 169 | 27 | 198 | 2.80e-37 | 135 |
| Msa1193470 | AT5G01200.1 | 40.415 | 193 | 80 | 6 | 7 | 169 | 26 | 213 | 1.19e-34 | 128 |
| Msa1193470 | AT4G09450.1 | 37.500 | 200 | 106 | 6 | 10 | 207 | 6 | 188 | 2.49e-25 | 101 |
| Msa1193470 | AT3G10580.2 | 39.157 | 166 | 77 | 6 | 11 | 167 | 8 | 158 | 1.28e-23 | 98.6 |
| Msa1193470 | AT3G10580.1 | 39.157 | 166 | 77 | 6 | 11 | 167 | 8 | 158 | 1.75e-23 | 99.0 |
| Msa1193470 | AT1G75250.2 | 54.286 | 70 | 32 | 0 | 11 | 80 | 12 | 81 | 2.81e-20 | 85.1 |
| Msa1193470 | AT1G75250.1 | 54.286 | 70 | 32 | 0 | 11 | 80 | 12 | 81 | 1.70e-19 | 84.0 |
| Msa1193470 | AT4G39250.1 | 48.052 | 77 | 36 | 1 | 11 | 87 | 14 | 86 | 7.46e-19 | 81.3 |
| Msa1193470 | AT5G47390.1 | 57.576 | 66 | 26 | 1 | 102 | 167 | 98 | 161 | 2.48e-18 | 85.5 |
| Msa1193470 | AT3G10590.1 | 33.889 | 180 | 97 | 7 | 11 | 173 | 7 | 181 | 2.91e-18 | 82.8 |
| Msa1193470 | AT5G56840.1 | 57.576 | 66 | 27 | 1 | 102 | 167 | 93 | 157 | 5.24e-17 | 79.7 |
| Msa1193470 | AT5G61620.1 | 44.444 | 90 | 43 | 2 | 102 | 191 | 110 | 192 | 9.07e-17 | 80.5 |
| Msa1193470 | AT3G16350.1 | 50.000 | 86 | 34 | 2 | 69 | 146 | 99 | 183 | 1.16e-16 | 80.9 |
| Msa1193470 | AT2G21650.1 | 48.611 | 72 | 37 | 0 | 11 | 82 | 14 | 85 | 1.60e-16 | 74.7 |
| Msa1193470 | AT1G70000.1 | 75.556 | 45 | 11 | 0 | 102 | 146 | 100 | 144 | 2.91e-16 | 78.2 |
| Msa1193470 | AT1G70000.2 | 75.556 | 45 | 11 | 0 | 102 | 146 | 100 | 144 | 2.91e-16 | 78.2 |
| Msa1193470 | AT1G19510.1 | 49.254 | 67 | 34 | 0 | 14 | 80 | 15 | 81 | 2.92e-16 | 73.9 |
| Msa1193470 | AT1G74840.2 | 68.889 | 45 | 14 | 0 | 102 | 146 | 98 | 142 | 5.82e-16 | 77.0 |
| Msa1193470 | AT1G74840.1 | 68.889 | 45 | 14 | 0 | 102 | 146 | 98 | 142 | 7.02e-16 | 77.0 |
| Msa1193470 | AT1G19000.2 | 66.667 | 45 | 15 | 0 | 102 | 146 | 104 | 148 | 1.72e-14 | 73.6 |
| Msa1193470 | AT1G19000.1 | 66.667 | 45 | 15 | 0 | 102 | 146 | 104 | 148 | 1.72e-14 | 73.6 |
| Msa1193470 | AT2G18328.1 | 52.542 | 59 | 28 | 0 | 15 | 73 | 15 | 73 | 1.31e-13 | 65.9 |
| Msa1193470 | AT3G10585.1 | 34.337 | 166 | 78 | 7 | 11 | 173 | 7 | 144 | 8.52e-12 | 63.5 |
| Msa1193470 | AT3G10595.1 | 24.859 | 177 | 118 | 4 | 11 | 187 | 6 | 167 | 1.63e-11 | 63.2 |
Find 112 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCATCCAGCCCCACTTTC+TGG | 0.161849 | 8_1:+39818959 | Msa1193470:CDS |
| TAAACATCACTATGAGATTT+TGG | 0.187100 | 8_1:+39817917 | Msa1193470:CDS |
| TGGATGATCATCTAAATTTC+TGG | 0.206174 | 8_1:-39818945 | None:intergenic |
| GATGAGCAGGTTATTTCTTA+TGG | 0.229350 | 8_1:+39818418 | Msa1193470:intron |
| TTGCTTGCTTGACCGGTAAT+TGG | 0.261142 | 8_1:-39818623 | None:intergenic |
| CAGAGGATTATTTAAAGTTC+TGG | 0.281118 | 8_1:-39818696 | None:intergenic |
| CCAGCCCCACTTTCTGGACT+TGG | 0.309122 | 8_1:+39818965 | Msa1193470:CDS |
| GTATCTGCTTTCGGCGCTGC+AGG | 0.317922 | 8_1:+39819034 | Msa1193470:CDS |
| TCTGTTGGAACTAGAAATTT+AGG | 0.321437 | 8_1:+39818752 | Msa1193470:CDS |
| TGAAAGAGGAGCAGTGAAAA+AGG | 0.324040 | 8_1:+39818025 | Msa1193470:CDS |
| ATGGTATTGGACCAGTTTCT+TGG | 0.328363 | 8_1:+39819086 | Msa1193470:CDS |
| GGGCTTCCGGTTCTTATCAT+TGG | 0.336367 | 8_1:+39818054 | Msa1193470:CDS |
| CCGGGAGCAGTCAGAATTCC+TGG | 0.337631 | 8_1:-39818863 | None:intergenic |
| ATGAGCAGGTTATTTCTTAT+GGG | 0.354456 | 8_1:+39818419 | Msa1193470:intron |
| TCTTTCTTTCTTCTCTTTCG+TGG | 0.354521 | 8_1:-39818555 | None:intergenic |
| GGCATATTTGTCCAAGAAAC+TGG | 0.357689 | 8_1:-39819097 | None:intergenic |
| GATATCCACAACATTGAATC+TGG | 0.364726 | 8_1:+39817945 | Msa1193470:CDS |
| CTTATGGGCGTGGAGAAGTA+TGG | 0.382631 | 8_1:+39818434 | Msa1193470:CDS |
| GCTCCCGGACACATGGCTTA+TGG | 0.384505 | 8_1:+39819067 | Msa1193470:CDS |
| GGACACATGGCTTATGGTAT+TGG | 0.393934 | 8_1:+39819073 | Msa1193470:CDS |
| AGACGGGTTGTATCTGCTTT+CGG | 0.398815 | 8_1:+39819025 | Msa1193470:CDS |
| TGCAGAATTGCTTGCTTGAC+CGG | 0.401515 | 8_1:-39818630 | None:intergenic |
| ATAGGCGACATCGTGTATTC+TGG | 0.417387 | 8_1:-39818585 | None:intergenic |
| AACAGCATCCTCGGGATGAT+TGG | 0.418808 | 8_1:-39817841 | None:intergenic |
| GATACAACCAGTCCTTCTAT+AGG | 0.426589 | 8_1:-39818827 | None:intergenic |
| AGAAGTATGGAAAGGGTAAA+TGG | 0.436340 | 8_1:+39818447 | Msa1193470:CDS |
| CCTTGGATCGGGCAACCTAT+AGG | 0.440600 | 8_1:+39819001 | Msa1193470:CDS |
| TTCTGTCCAATGATAAGAAC+CGG | 0.442794 | 8_1:-39818060 | None:intergenic |
| GCCAGGGGTACCAATGAACT+TGG | 0.443338 | 8_1:+39819117 | Msa1193470:CDS |
| GCAGGGATTCCTTCTGCTCC+CGG | 0.445050 | 8_1:+39819052 | Msa1193470:CDS |
| TTGGAGTTTATGATGTGCCT+TGG | 0.448871 | 8_1:+39818984 | Msa1193470:CDS |
| GATACAACCCGTCTTCCTAT+AGG | 0.454270 | 8_1:-39819016 | None:intergenic |
| CCATCGATCAACAGCATCCT+CGG | 0.458092 | 8_1:-39817850 | None:intergenic |
| AAAATTGCGGCTGATGTGCC+CGG | 0.461117 | 8_1:+39817876 | Msa1193470:CDS |
| TTTATGATGTGCCTTGGATC+GGG | 0.462141 | 8_1:+39818990 | Msa1193470:CDS |
| AGAGAGGACCAACCTATAGA+AGG | 0.463714 | 8_1:+39818815 | Msa1193470:CDS |
| AAACCTCAAGGACCAATTAC+CGG | 0.466468 | 8_1:+39818611 | Msa1193470:CDS |
| AATTTCTGGTTCCAGAAGGC+GGG | 0.466542 | 8_1:-39818931 | None:intergenic |
| GTCATAGGACCCAAGTTCAT+TGG | 0.473573 | 8_1:-39819127 | None:intergenic |
| CCCAAGTTCATTGGTACCCC+TGG | 0.474063 | 8_1:-39819118 | None:intergenic |
| AAAACTCCAGCACATGGGAT+TGG | 0.478560 | 8_1:-39818782 | None:intergenic |
| TATCTGCTTTCGGCGCTGCA+GGG | 0.480158 | 8_1:+39819035 | Msa1193470:CDS |
| AATCCTCTGGCTCCACCTGC+CGG | 0.481371 | 8_1:+39818710 | Msa1193470:CDS |
| TCCTTCTGCTCCCGGACACA+TGG | 0.487497 | 8_1:+39819060 | Msa1193470:CDS |
| GTATCCGAAGTTGGCACTCC+AGG | 0.488034 | 8_1:+39818845 | Msa1193470:CDS |
| CCAGGAATTCTGACTGCTCC+CGG | 0.491706 | 8_1:+39818863 | Msa1193470:CDS |
| ACAAAGTGTGCTGGTGAAAG+AGG | 0.497833 | 8_1:+39818011 | Msa1193470:CDS |
| CCAAGTCCAGAAAGTGGGGC+TGG | 0.498593 | 8_1:-39818965 | None:intergenic |
| CAGGTTATTTCTTATGGGCG+TGG | 0.501373 | 8_1:+39818424 | Msa1193470:intron |
| GTTTATGATGTGCCTTGGAT+CGG | 0.504908 | 8_1:+39818989 | Msa1193470:CDS |
| TAAATTGTTCGAAAATGCAT+TGG | 0.509004 | 8_1:+39817818 | Msa1193470:CDS |
| TCTATAGGTTGGTCCTCTCT+AGG | 0.509556 | 8_1:-39818812 | None:intergenic |
| ACTCCAGCACATGGGATTGG+AGG | 0.513427 | 8_1:-39818779 | None:intergenic |
| AATCAAAATAATGGATGAAG+TGG | 0.514101 | 8_1:+39817761 | None:intergenic |
| AATACCATAAGCCATGTGTC+CGG | 0.520964 | 8_1:-39819071 | None:intergenic |
| CGAGGATGCTGTTGATCGAT+GGG | 0.525087 | 8_1:+39817851 | Msa1193470:CDS |
| CCGAGGATGCTGTTGATCGA+TGG | 0.525902 | 8_1:+39817850 | Msa1193470:CDS |
| CGAAAGAGAAGAAAGAAAGA+AGG | 0.527182 | 8_1:+39818558 | Msa1193470:CDS |
| AATCCTCCAATCCCATGTGC+TGG | 0.528042 | 8_1:+39818776 | Msa1193470:CDS |
| CAGAACTTTAAATAATCCTC+TGG | 0.528493 | 8_1:+39818697 | Msa1193470:CDS |
| GGCGTGGAGAAGTATGGAAA+GGG | 0.531559 | 8_1:+39818440 | Msa1193470:CDS |
| TGGCGAAGCAGCATACATTC+CGG | 0.533982 | 8_1:-39818729 | None:intergenic |
| AAAGTTCTGGTACCAACAGA+TGG | 0.539373 | 8_1:-39818683 | None:intergenic |
| GCCATGTGTCCGGGAGCAGA+AGG | 0.540860 | 8_1:-39819061 | None:intergenic |
| GTTTCTTGGACAAATATGCC+AGG | 0.542042 | 8_1:+39819100 | Msa1193470:CDS |
| GCTTGAGGAGCATAAACTCC+GGG | 0.545991 | 8_1:-39818881 | None:intergenic |
| CATCGATCAACAGCATCCTC+GGG | 0.548607 | 8_1:-39817849 | None:intergenic |
| CATGCTCAGAAATACTTCAA+AGG | 0.551854 | 8_1:+39818524 | Msa1193470:CDS |
| ATACCATAAGCCATGTGTCC+GGG | 0.552377 | 8_1:-39819070 | None:intergenic |
| GGACTGGTTGTATCCGAAGT+TGG | 0.552531 | 8_1:+39818836 | Msa1193470:CDS |
| CGAGCGAAAACTCCAGCACA+TGG | 0.552659 | 8_1:-39818788 | None:intergenic |
| AAGAGCTCAACAAAGTGTGC+TGG | 0.556921 | 8_1:+39818002 | Msa1193470:CDS |
| TATGCTGCTTCGCCATCTGT+TGG | 0.563547 | 8_1:+39818737 | Msa1193470:CDS |
| CCTATAGGTTGCCCGATCCA+AGG | 0.564457 | 8_1:-39819001 | None:intergenic |
| TAAACTCCAAGTCCAGAAAG+TGG | 0.565721 | 8_1:-39818971 | None:intergenic |
| AAACTCCAAGTCCAGAAAGT+GGG | 0.566030 | 8_1:-39818970 | None:intergenic |
| CAAAACCAGATTCAATGTTG+TGG | 0.566485 | 8_1:-39817950 | None:intergenic |
| GAAGCAGCATACATTCCGGC+AGG | 0.568137 | 8_1:-39818725 | None:intergenic |
| AAATTTCTGGTTCCAGAAGG+CGG | 0.568201 | 8_1:-39818932 | None:intergenic |
| ATTTCAGTAGGTGGAGCTTG+AGG | 0.570653 | 8_1:-39818896 | None:intergenic |
| GGACCAACCTATAGAAGGAC+TGG | 0.574880 | 8_1:+39818820 | Msa1193470:CDS |
| CAACCAGTCCTTCTATAGGT+TGG | 0.576619 | 8_1:-39818823 | None:intergenic |
| AAATTTCTAGTTCCAACAGA+TGG | 0.578638 | 8_1:-39818749 | None:intergenic |
| TGGTCCTTGAGGTTTGACAT+AGG | 0.583815 | 8_1:-39818603 | None:intergenic |
| AAAGAATCATAATCTGGCAG+AGG | 0.587497 | 8_1:-39817975 | None:intergenic |
| ATTTCTGGTTCCAGAAGGCG+GGG | 0.588808 | 8_1:-39818930 | None:intergenic |
| AATTCCTGGAGTGCCAACTT+CGG | 0.593276 | 8_1:-39818849 | None:intergenic |
| TTTCTTGGACAAATATGCCA+GGG | 0.593394 | 8_1:+39819101 | Msa1193470:CDS |
| GCAGCATACATTCCGGCAGG+TGG | 0.596107 | 8_1:-39818722 | None:intergenic |
| GTACCAACAGATGGAGCTTG+AGG | 0.598203 | 8_1:-39818674 | None:intergenic |
| AAATTGCGGCTGATGTGCCC+GGG | 0.599032 | 8_1:+39817877 | Msa1193470:CDS |
| ATTCCGGCAGGTGGAGCCAG+AGG | 0.603319 | 8_1:-39818713 | None:intergenic |
| TCTAAATTTCTGGTTCCAGA+AGG | 0.603646 | 8_1:-39818935 | None:intergenic |
| GGGCGTGGAGAAGTATGGAA+AGG | 0.603697 | 8_1:+39818439 | Msa1193470:CDS |
| TCGGGCAACCTATAGGAAGA+CGG | 0.605588 | 8_1:+39819008 | Msa1193470:CDS |
| ATCAAAATAATGGATGAAGT+GGG | 0.606623 | 8_1:+39817762 | None:intergenic |
| ACCTACTGAAATGTATGTTG+CGG | 0.608786 | 8_1:+39818907 | Msa1193470:CDS |
| GCAACATACATTTCAGTAGG+TGG | 0.610815 | 8_1:-39818905 | None:intergenic |
| ACTCCTCAAGCTCCATCTGT+TGG | 0.611272 | 8_1:+39818671 | Msa1193470:CDS |
| GTCGCCTATGTCAAACCTCA+AGG | 0.619811 | 8_1:+39818599 | Msa1193470:CDS |
| AACTCCAAGTCCAGAAAGTG+GGG | 0.623055 | 8_1:-39818969 | None:intergenic |
| AGCTTGAGGAGCATAAACTC+CGG | 0.627574 | 8_1:-39818882 | None:intergenic |
| ATTGGACAGAAGACGAACAC+AGG | 0.628543 | 8_1:+39818072 | Msa1193470:CDS |
| TGACCGGTAATTGGTCCTTG+AGG | 0.631213 | 8_1:-39818614 | None:intergenic |
| TGGAGCTTGAGGAGTTTGTG+TGG | 0.647801 | 8_1:-39818663 | None:intergenic |
| CCAGGGGTACCAATGAACTT+GGG | 0.650736 | 8_1:+39819118 | Msa1193470:CDS |
| GAGCGAAAACTCCAGCACAT+GGG | 0.658389 | 8_1:-39818787 | None:intergenic |
| GCCGCAACATACATTTCAGT+AGG | 0.662941 | 8_1:-39818908 | None:intergenic |
| TGCATTGGCCAATCATCCCG+AGG | 0.663855 | 8_1:+39817833 | Msa1193470:CDS |
| TGGGTAGTAGAAGCTATGAG+TGG | 0.665232 | 8_1:+39817781 | Msa1193470:CDS |
| TTCTTGGACAAATATGCCAG+GGG | 0.665492 | 8_1:+39819102 | Msa1193470:CDS |
| TGATCGATGGGAGAAAATTG+CGG | 0.690864 | 8_1:+39817863 | Msa1193470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGATAAGATACTAATTA+AGG | + | chr8_1:39818185-39818204 | Msa1193470:intron | 15.0% |
| !! | TAATGATAAGATACTAATTA+AGG | + | chr8_1:39818185-39818204 | Msa1193470:intron | 15.0% |
| !! | TTTGAAAAAGAATCATAATC+TGG | - | chr8_1:39817984-39818003 | None:intergenic | 20.0% |
| !! | GTTATTATTTACAACTTACA+TGG | + | chr8_1:39818147-39818166 | Msa1193470:intron | 20.0% |
| !! | AAAAATATCAGAGAATTATG+TGG | + | chr8_1:39818472-39818491 | Msa1193470:CDS | 20.0% |
| !! | TTTGAAAAAGAATCATAATC+TGG | - | chr8_1:39817984-39818003 | None:intergenic | 20.0% |
| !! | GTTATTATTTACAACTTACA+TGG | + | chr8_1:39818147-39818166 | Msa1193470:intron | 20.0% |
| !! | AAAAATATCAGAGAATTATG+TGG | + | chr8_1:39818472-39818491 | Msa1193470:CDS | 20.0% |
| ! | TAAATTGTTCGAAAATGCAT+TGG | + | chr8_1:39817818-39817837 | Msa1193470:CDS | 25.0% |
| !! | TAAACATCACTATGAGATTT+TGG | + | chr8_1:39817917-39817936 | Msa1193470:CDS | 25.0% |
| ! | GTTTCTTGAATTACTTTCAA+TGG | + | chr8_1:39818315-39818334 | Msa1193470:intron | 25.0% |
| !!! | ACTGATTGTTTTTATGTTGA+AGG | - | chr8_1:39818344-39818363 | None:intergenic | 25.0% |
| !! | TATTTTCAAATTTGATGAGC+AGG | + | chr8_1:39818405-39818424 | Msa1193470:intron | 25.0% |
| ! | TAAATTGTTCGAAAATGCAT+TGG | + | chr8_1:39817818-39817837 | Msa1193470:CDS | 25.0% |
| !! | TAAACATCACTATGAGATTT+TGG | + | chr8_1:39817917-39817936 | Msa1193470:CDS | 25.0% |
| ! | GTTTCTTGAATTACTTTCAA+TGG | + | chr8_1:39818315-39818334 | Msa1193470:intron | 25.0% |
| !!! | ACTGATTGTTTTTATGTTGA+AGG | - | chr8_1:39818344-39818363 | None:intergenic | 25.0% |
| !! | TATTTTCAAATTTGATGAGC+AGG | + | chr8_1:39818405-39818424 | Msa1193470:intron | 25.0% |
| !!! | AATCTCTTCTAAAGTTTTCC+CGG | - | chr8_1:39817898-39817917 | None:intergenic | 30.0% |
| ACTAATTAAGGTGAAGCTTT+AGG | + | chr8_1:39818197-39818216 | Msa1193470:intron | 30.0% | |
| CTAATTAAGGTGAAGCTTTA+GGG | + | chr8_1:39818198-39818217 | Msa1193470:intron | 30.0% | |
| ! | TATATCACTAGTGCTAGTTT+AGG | + | chr8_1:39818278-39818297 | Msa1193470:intron | 30.0% |
| ! | ATATCACTAGTGCTAGTTTA+GGG | + | chr8_1:39818279-39818298 | Msa1193470:intron | 30.0% |
| !! | ATGAGCAGGTTATTTCTTAT+GGG | + | chr8_1:39818419-39818438 | Msa1193470:intron | 30.0% |
| ! | CAGAGGATTATTTAAAGTTC+TGG | - | chr8_1:39818699-39818718 | None:intergenic | 30.0% |
| CAGAACTTTAAATAATCCTC+TGG | + | chr8_1:39818697-39818716 | Msa1193470:CDS | 30.0% | |
| !! | AAATTTCTAGTTCCAACAGA+TGG | - | chr8_1:39818752-39818771 | None:intergenic | 30.0% |
| TCTGTTGGAACTAGAAATTT+AGG | + | chr8_1:39818752-39818771 | Msa1193470:CDS | 30.0% | |
| TGGATGATCATCTAAATTTC+TGG | - | chr8_1:39818948-39818967 | None:intergenic | 30.0% | |
| ! | TGAGCAAATGTATTTTGCAT+GGG | - | chr8_1:39819157-39819176 | None:intergenic | 30.0% |
| !!! | AATCTCTTCTAAAGTTTTCC+CGG | - | chr8_1:39817898-39817917 | None:intergenic | 30.0% |
| ACTAATTAAGGTGAAGCTTT+AGG | + | chr8_1:39818197-39818216 | Msa1193470:intron | 30.0% | |
| CTAATTAAGGTGAAGCTTTA+GGG | + | chr8_1:39818198-39818217 | Msa1193470:intron | 30.0% | |
| ! | TATATCACTAGTGCTAGTTT+AGG | + | chr8_1:39818278-39818297 | Msa1193470:intron | 30.0% |
| ! | ATATCACTAGTGCTAGTTTA+GGG | + | chr8_1:39818279-39818298 | Msa1193470:intron | 30.0% |
| !! | ATGAGCAGGTTATTTCTTAT+GGG | + | chr8_1:39818419-39818438 | Msa1193470:intron | 30.0% |
| ! | CAGAGGATTATTTAAAGTTC+TGG | - | chr8_1:39818699-39818718 | None:intergenic | 30.0% |
| CAGAACTTTAAATAATCCTC+TGG | + | chr8_1:39818697-39818716 | Msa1193470:CDS | 30.0% | |
| !! | AAATTTCTAGTTCCAACAGA+TGG | - | chr8_1:39818752-39818771 | None:intergenic | 30.0% |
| TCTGTTGGAACTAGAAATTT+AGG | + | chr8_1:39818752-39818771 | Msa1193470:CDS | 30.0% | |
| TGGATGATCATCTAAATTTC+TGG | - | chr8_1:39818948-39818967 | None:intergenic | 30.0% | |
| ! | TGAGCAAATGTATTTTGCAT+GGG | - | chr8_1:39819157-39819176 | None:intergenic | 30.0% |
| !!! | ATCTCTTCTAAAGTTTTCCC+GGG | - | chr8_1:39817897-39817916 | None:intergenic | 35.0% |
| GATATCCACAACATTGAATC+TGG | + | chr8_1:39817945-39817964 | Msa1193470:CDS | 35.0% | |
| CAAAACCAGATTCAATGTTG+TGG | - | chr8_1:39817953-39817972 | None:intergenic | 35.0% | |
| AAAGAATCATAATCTGGCAG+AGG | - | chr8_1:39817978-39817997 | None:intergenic | 35.0% | |
| TTCTGTCCAATGATAAGAAC+CGG | - | chr8_1:39818063-39818082 | None:intergenic | 35.0% | |
| ATCTTTGCTTTGCTTTGCTT+TGG | + | chr8_1:39818102-39818121 | Msa1193470:intron | 35.0% | |
| CATTAGAGTGTGCTCTATTA+AGG | + | chr8_1:39818242-39818261 | Msa1193470:intron | 35.0% | |
| ! | TAGTGCTAGTTTAGGGTTTA+GGG | + | chr8_1:39818286-39818305 | Msa1193470:intron | 35.0% |
| !! | GATGAGCAGGTTATTTCTTA+TGG | + | chr8_1:39818418-39818437 | Msa1193470:intron | 35.0% |
| ! | AGAAGTATGGAAAGGGTAAA+TGG | + | chr8_1:39818447-39818466 | Msa1193470:CDS | 35.0% |
| CATGCTCAGAAATACTTCAA+AGG | + | chr8_1:39818524-39818543 | Msa1193470:CDS | 35.0% | |
| TCTTTCTTTCTTCTCTTTCG+TGG | - | chr8_1:39818558-39818577 | None:intergenic | 35.0% | |
| CGAAAGAGAAGAAAGAAAGA+AGG | + | chr8_1:39818558-39818577 | Msa1193470:CDS | 35.0% | |
| ACCTACTGAAATGTATGTTG+CGG | + | chr8_1:39818907-39818926 | Msa1193470:CDS | 35.0% | |
| !! | TCTAAATTTCTGGTTCCAGA+AGG | - | chr8_1:39818938-39818957 | None:intergenic | 35.0% |
| TTTCTTGGACAAATATGCCA+GGG | + | chr8_1:39819101-39819120 | Msa1193470:CDS | 35.0% | |
| ! | TTTTGCATGGGAAATGTCAT+AGG | - | chr8_1:39819145-39819164 | None:intergenic | 35.0% |
| ! | GTGAGCAAATGTATTTTGCA+TGG | - | chr8_1:39819158-39819177 | None:intergenic | 35.0% |
| !!! | ATCTCTTCTAAAGTTTTCCC+GGG | - | chr8_1:39817897-39817916 | None:intergenic | 35.0% |
| GATATCCACAACATTGAATC+TGG | + | chr8_1:39817945-39817964 | Msa1193470:CDS | 35.0% | |
| CAAAACCAGATTCAATGTTG+TGG | - | chr8_1:39817953-39817972 | None:intergenic | 35.0% | |
| AAAGAATCATAATCTGGCAG+AGG | - | chr8_1:39817978-39817997 | None:intergenic | 35.0% | |
| TTCTGTCCAATGATAAGAAC+CGG | - | chr8_1:39818063-39818082 | None:intergenic | 35.0% | |
| ATCTTTGCTTTGCTTTGCTT+TGG | + | chr8_1:39818102-39818121 | Msa1193470:intron | 35.0% | |
| CATTAGAGTGTGCTCTATTA+AGG | + | chr8_1:39818242-39818261 | Msa1193470:intron | 35.0% | |
| ! | TAGTGCTAGTTTAGGGTTTA+GGG | + | chr8_1:39818286-39818305 | Msa1193470:intron | 35.0% |
| !! | GATGAGCAGGTTATTTCTTA+TGG | + | chr8_1:39818418-39818437 | Msa1193470:intron | 35.0% |
| ! | AGAAGTATGGAAAGGGTAAA+TGG | + | chr8_1:39818447-39818466 | Msa1193470:CDS | 35.0% |
| CATGCTCAGAAATACTTCAA+AGG | + | chr8_1:39818524-39818543 | Msa1193470:CDS | 35.0% | |
| TCTTTCTTTCTTCTCTTTCG+TGG | - | chr8_1:39818558-39818577 | None:intergenic | 35.0% | |
| CGAAAGAGAAGAAAGAAAGA+AGG | + | chr8_1:39818558-39818577 | Msa1193470:CDS | 35.0% | |
| ACCTACTGAAATGTATGTTG+CGG | + | chr8_1:39818907-39818926 | Msa1193470:CDS | 35.0% | |
| !! | TCTAAATTTCTGGTTCCAGA+AGG | - | chr8_1:39818938-39818957 | None:intergenic | 35.0% |
| TTTCTTGGACAAATATGCCA+GGG | + | chr8_1:39819101-39819120 | Msa1193470:CDS | 35.0% | |
| ! | TTTTGCATGGGAAATGTCAT+AGG | - | chr8_1:39819145-39819164 | None:intergenic | 35.0% |
| ! | GTGAGCAAATGTATTTTGCA+TGG | - | chr8_1:39819158-39819177 | None:intergenic | 35.0% |
| TGATCGATGGGAGAAAATTG+CGG | + | chr8_1:39817863-39817882 | Msa1193470:CDS | 40.0% | |
| TGAAAGAGGAGCAGTGAAAA+AGG | + | chr8_1:39818025-39818044 | Msa1193470:CDS | 40.0% | |
| GAAAGAGGAGCAGTGAAAAA+GGG | + | chr8_1:39818026-39818045 | Msa1193470:CDS | 40.0% | |
| AGCAGTGAAAAAGGGAACTA+GGG | + | chr8_1:39818034-39818053 | Msa1193470:CDS | 40.0% | |
| ! | CTAGTGCTAGTTTAGGGTTT+AGG | + | chr8_1:39818285-39818304 | Msa1193470:intron | 40.0% |
| AAACCTCAAGGACCAATTAC+CGG | + | chr8_1:39818611-39818630 | Msa1193470:CDS | 40.0% | |
| ! | AAAGTTCTGGTACCAACAGA+TGG | - | chr8_1:39818686-39818705 | None:intergenic | 40.0% |
| GATACAACCAGTCCTTCTAT+AGG | - | chr8_1:39818830-39818849 | None:intergenic | 40.0% | |
| GCAACATACATTTCAGTAGG+TGG | - | chr8_1:39818908-39818927 | None:intergenic | 40.0% | |
| !! | AAATTTCTGGTTCCAGAAGG+CGG | - | chr8_1:39818935-39818954 | None:intergenic | 40.0% |
| AAACTCCAAGTCCAGAAAGT+GGG | - | chr8_1:39818973-39818992 | None:intergenic | 40.0% | |
| TAAACTCCAAGTCCAGAAAG+TGG | - | chr8_1:39818974-39818993 | None:intergenic | 40.0% | |
| TTGGAGTTTATGATGTGCCT+TGG | + | chr8_1:39818984-39819003 | Msa1193470:CDS | 40.0% | |
| GTTTATGATGTGCCTTGGAT+CGG | + | chr8_1:39818989-39819008 | Msa1193470:CDS | 40.0% | |
| TTTATGATGTGCCTTGGATC+GGG | + | chr8_1:39818990-39819009 | Msa1193470:CDS | 40.0% | |
| AATACCATAAGCCATGTGTC+CGG | - | chr8_1:39819074-39819093 | None:intergenic | 40.0% | |
| ! | ATGGTATTGGACCAGTTTCT+TGG | + | chr8_1:39819086-39819105 | Msa1193470:CDS | 40.0% |
| GGCATATTTGTCCAAGAAAC+TGG | - | chr8_1:39819100-39819119 | None:intergenic | 40.0% | |
| GTTTCTTGGACAAATATGCC+AGG | + | chr8_1:39819100-39819119 | Msa1193470:CDS | 40.0% | |
| TTCTTGGACAAATATGCCAG+GGG | + | chr8_1:39819102-39819121 | Msa1193470:CDS | 40.0% | |
| TGATCGATGGGAGAAAATTG+CGG | + | chr8_1:39817863-39817882 | Msa1193470:CDS | 40.0% | |
| TGAAAGAGGAGCAGTGAAAA+AGG | + | chr8_1:39818025-39818044 | Msa1193470:CDS | 40.0% | |
| GAAAGAGGAGCAGTGAAAAA+GGG | + | chr8_1:39818026-39818045 | Msa1193470:CDS | 40.0% | |
| AGCAGTGAAAAAGGGAACTA+GGG | + | chr8_1:39818034-39818053 | Msa1193470:CDS | 40.0% | |
| ! | CTAGTGCTAGTTTAGGGTTT+AGG | + | chr8_1:39818285-39818304 | Msa1193470:intron | 40.0% |
| AAACCTCAAGGACCAATTAC+CGG | + | chr8_1:39818611-39818630 | Msa1193470:CDS | 40.0% | |
| ! | AAAGTTCTGGTACCAACAGA+TGG | - | chr8_1:39818686-39818705 | None:intergenic | 40.0% |
| GATACAACCAGTCCTTCTAT+AGG | - | chr8_1:39818830-39818849 | None:intergenic | 40.0% | |
| GCAACATACATTTCAGTAGG+TGG | - | chr8_1:39818908-39818927 | None:intergenic | 40.0% | |
| !! | AAATTTCTGGTTCCAGAAGG+CGG | - | chr8_1:39818935-39818954 | None:intergenic | 40.0% |
| AAACTCCAAGTCCAGAAAGT+GGG | - | chr8_1:39818973-39818992 | None:intergenic | 40.0% | |
| TAAACTCCAAGTCCAGAAAG+TGG | - | chr8_1:39818974-39818993 | None:intergenic | 40.0% | |
| TTGGAGTTTATGATGTGCCT+TGG | + | chr8_1:39818984-39819003 | Msa1193470:CDS | 40.0% | |
| GTTTATGATGTGCCTTGGAT+CGG | + | chr8_1:39818989-39819008 | Msa1193470:CDS | 40.0% | |
| TTTATGATGTGCCTTGGATC+GGG | + | chr8_1:39818990-39819009 | Msa1193470:CDS | 40.0% | |
| AATACCATAAGCCATGTGTC+CGG | - | chr8_1:39819074-39819093 | None:intergenic | 40.0% | |
| ! | ATGGTATTGGACCAGTTTCT+TGG | + | chr8_1:39819086-39819105 | Msa1193470:CDS | 40.0% |
| GGCATATTTGTCCAAGAAAC+TGG | - | chr8_1:39819100-39819119 | None:intergenic | 40.0% | |
| GTTTCTTGGACAAATATGCC+AGG | + | chr8_1:39819100-39819119 | Msa1193470:CDS | 40.0% | |
| TTCTTGGACAAATATGCCAG+GGG | + | chr8_1:39819102-39819121 | Msa1193470:CDS | 40.0% | |
| TGGGTAGTAGAAGCTATGAG+TGG | + | chr8_1:39817781-39817800 | Msa1193470:CDS | 45.0% | |
| AAGAGCTCAACAAAGTGTGC+TGG | + | chr8_1:39818002-39818021 | Msa1193470:CDS | 45.0% | |
| ! | ACAAAGTGTGCTGGTGAAAG+AGG | + | chr8_1:39818011-39818030 | Msa1193470:CDS | 45.0% |
| GAGCAGTGAAAAAGGGAACT+AGG | + | chr8_1:39818033-39818052 | Msa1193470:CDS | 45.0% | |
| AAAAAGGGAACTAGGGCTTC+CGG | + | chr8_1:39818041-39818060 | Msa1193470:CDS | 45.0% | |
| ATTGGACAGAAGACGAACAC+AGG | + | chr8_1:39818072-39818091 | Msa1193470:CDS | 45.0% | |
| !! | CAGGTTATTTCTTATGGGCG+TGG | + | chr8_1:39818424-39818443 | Msa1193470:intron | 45.0% |
| ATAGGCGACATCGTGTATTC+TGG | - | chr8_1:39818588-39818607 | None:intergenic | 45.0% | |
| TGGTCCTTGAGGTTTGACAT+AGG | - | chr8_1:39818606-39818625 | None:intergenic | 45.0% | |
| TTGCTTGCTTGACCGGTAAT+TGG | - | chr8_1:39818626-39818645 | None:intergenic | 45.0% | |
| TGCAGAATTGCTTGCTTGAC+CGG | - | chr8_1:39818633-39818652 | None:intergenic | 45.0% | |
| AAAACTCCAGCACATGGGAT+TGG | - | chr8_1:39818785-39818804 | None:intergenic | 45.0% | |
| !! | TCTATAGGTTGGTCCTCTCT+AGG | - | chr8_1:39818815-39818834 | None:intergenic | 45.0% |
| AGAGAGGACCAACCTATAGA+AGG | + | chr8_1:39818815-39818834 | Msa1193470:CDS | 45.0% | |
| CAACCAGTCCTTCTATAGGT+TGG | - | chr8_1:39818826-39818845 | None:intergenic | 45.0% | |
| ! | AATTCCTGGAGTGCCAACTT+CGG | - | chr8_1:39818852-39818871 | None:intergenic | 45.0% |
| ! | AGCTTGAGGAGCATAAACTC+CGG | - | chr8_1:39818885-39818904 | None:intergenic | 45.0% |
| ATTTCAGTAGGTGGAGCTTG+AGG | - | chr8_1:39818899-39818918 | None:intergenic | 45.0% | |
| GCCGCAACATACATTTCAGT+AGG | - | chr8_1:39818911-39818930 | None:intergenic | 45.0% | |
| !! | AATTTCTGGTTCCAGAAGGC+GGG | - | chr8_1:39818934-39818953 | None:intergenic | 45.0% |
| AACTCCAAGTCCAGAAAGTG+GGG | - | chr8_1:39818972-39818991 | None:intergenic | 45.0% | |
| GATACAACCCGTCTTCCTAT+AGG | - | chr8_1:39819019-39819038 | None:intergenic | 45.0% | |
| !! | AGACGGGTTGTATCTGCTTT+CGG | + | chr8_1:39819025-39819044 | Msa1193470:CDS | 45.0% |
| ATACCATAAGCCATGTGTCC+GGG | - | chr8_1:39819073-39819092 | None:intergenic | 45.0% | |
| GGACACATGGCTTATGGTAT+TGG | + | chr8_1:39819073-39819092 | Msa1193470:CDS | 45.0% | |
| GTCATAGGACCCAAGTTCAT+TGG | - | chr8_1:39819130-39819149 | None:intergenic | 45.0% | |
| TGGGTAGTAGAAGCTATGAG+TGG | + | chr8_1:39817781-39817800 | Msa1193470:CDS | 45.0% | |
| AAGAGCTCAACAAAGTGTGC+TGG | + | chr8_1:39818002-39818021 | Msa1193470:CDS | 45.0% | |
| ! | ACAAAGTGTGCTGGTGAAAG+AGG | + | chr8_1:39818011-39818030 | Msa1193470:CDS | 45.0% |
| GAGCAGTGAAAAAGGGAACT+AGG | + | chr8_1:39818033-39818052 | Msa1193470:CDS | 45.0% | |
| AAAAAGGGAACTAGGGCTTC+CGG | + | chr8_1:39818041-39818060 | Msa1193470:CDS | 45.0% | |
| ATTGGACAGAAGACGAACAC+AGG | + | chr8_1:39818072-39818091 | Msa1193470:CDS | 45.0% | |
| !! | CAGGTTATTTCTTATGGGCG+TGG | + | chr8_1:39818424-39818443 | Msa1193470:intron | 45.0% |
| ATAGGCGACATCGTGTATTC+TGG | - | chr8_1:39818588-39818607 | None:intergenic | 45.0% | |
| TGGTCCTTGAGGTTTGACAT+AGG | - | chr8_1:39818606-39818625 | None:intergenic | 45.0% | |
| TTGCTTGCTTGACCGGTAAT+TGG | - | chr8_1:39818626-39818645 | None:intergenic | 45.0% | |
| TGCAGAATTGCTTGCTTGAC+CGG | - | chr8_1:39818633-39818652 | None:intergenic | 45.0% | |
| AAAACTCCAGCACATGGGAT+TGG | - | chr8_1:39818785-39818804 | None:intergenic | 45.0% | |
| !! | TCTATAGGTTGGTCCTCTCT+AGG | - | chr8_1:39818815-39818834 | None:intergenic | 45.0% |
| AGAGAGGACCAACCTATAGA+AGG | + | chr8_1:39818815-39818834 | Msa1193470:CDS | 45.0% | |
| CAACCAGTCCTTCTATAGGT+TGG | - | chr8_1:39818826-39818845 | None:intergenic | 45.0% | |
| ! | AATTCCTGGAGTGCCAACTT+CGG | - | chr8_1:39818852-39818871 | None:intergenic | 45.0% |
| ! | AGCTTGAGGAGCATAAACTC+CGG | - | chr8_1:39818885-39818904 | None:intergenic | 45.0% |
| ATTTCAGTAGGTGGAGCTTG+AGG | - | chr8_1:39818899-39818918 | None:intergenic | 45.0% | |
| GCCGCAACATACATTTCAGT+AGG | - | chr8_1:39818911-39818930 | None:intergenic | 45.0% | |
| !! | AATTTCTGGTTCCAGAAGGC+GGG | - | chr8_1:39818934-39818953 | None:intergenic | 45.0% |
| AACTCCAAGTCCAGAAAGTG+GGG | - | chr8_1:39818972-39818991 | None:intergenic | 45.0% | |
| GATACAACCCGTCTTCCTAT+AGG | - | chr8_1:39819019-39819038 | None:intergenic | 45.0% | |
| !! | AGACGGGTTGTATCTGCTTT+CGG | + | chr8_1:39819025-39819044 | Msa1193470:CDS | 45.0% |
| ATACCATAAGCCATGTGTCC+GGG | - | chr8_1:39819073-39819092 | None:intergenic | 45.0% | |
| GGACACATGGCTTATGGTAT+TGG | + | chr8_1:39819073-39819092 | Msa1193470:CDS | 45.0% | |
| GTCATAGGACCCAAGTTCAT+TGG | - | chr8_1:39819130-39819149 | None:intergenic | 45.0% | |
| AACAGCATCCTCGGGATGAT+TGG | - | chr8_1:39817844-39817863 | None:intergenic | 50.0% | |
| CATCGATCAACAGCATCCTC+GGG | - | chr8_1:39817852-39817871 | None:intergenic | 50.0% | |
| CCATCGATCAACAGCATCCT+CGG | - | chr8_1:39817853-39817872 | None:intergenic | 50.0% | |
| CGAGGATGCTGTTGATCGAT+GGG | + | chr8_1:39817851-39817870 | Msa1193470:CDS | 50.0% | |
| AAAATTGCGGCTGATGTGCC+CGG | + | chr8_1:39817876-39817895 | Msa1193470:CDS | 50.0% | |
| GGGCTTCCGGTTCTTATCAT+TGG | + | chr8_1:39818054-39818073 | Msa1193470:CDS | 50.0% | |
| !! | GCTTTAGGGTCTACTAGCGT+TGG | + | chr8_1:39818212-39818231 | Msa1193470:intron | 50.0% |
| CTTATGGGCGTGGAGAAGTA+TGG | + | chr8_1:39818434-39818453 | Msa1193470:CDS | 50.0% | |
| ! | GGCGTGGAGAAGTATGGAAA+GGG | + | chr8_1:39818440-39818459 | Msa1193470:CDS | 50.0% |
| GTCGCCTATGTCAAACCTCA+AGG | + | chr8_1:39818599-39818618 | Msa1193470:CDS | 50.0% | |
| TGACCGGTAATTGGTCCTTG+AGG | - | chr8_1:39818617-39818636 | None:intergenic | 50.0% | |
| TGGAGCTTGAGGAGTTTGTG+TGG | - | chr8_1:39818666-39818685 | None:intergenic | 50.0% | |
| ACTCCTCAAGCTCCATCTGT+TGG | + | chr8_1:39818671-39818690 | Msa1193470:CDS | 50.0% | |
| GTACCAACAGATGGAGCTTG+AGG | - | chr8_1:39818677-39818696 | None:intergenic | 50.0% | |
| TGGCGAAGCAGCATACATTC+CGG | - | chr8_1:39818732-39818751 | None:intergenic | 50.0% | |
| ! | TATGCTGCTTCGCCATCTGT+TGG | + | chr8_1:39818737-39818756 | Msa1193470:CDS | 50.0% |
| AATCCTCCAATCCCATGTGC+TGG | + | chr8_1:39818776-39818795 | Msa1193470:CDS | 50.0% | |
| GAGCGAAAACTCCAGCACAT+GGG | - | chr8_1:39818790-39818809 | None:intergenic | 50.0% | |
| ! | AGTTTTCGCTCGTCCTAGAG+AGG | + | chr8_1:39818799-39818818 | Msa1193470:CDS | 50.0% |
| GGACCAACCTATAGAAGGAC+TGG | + | chr8_1:39818820-39818839 | Msa1193470:CDS | 50.0% | |
| !! | GGACTGGTTGTATCCGAAGT+TGG | + | chr8_1:39818836-39818855 | Msa1193470:CDS | 50.0% |
| ! | GCTTGAGGAGCATAAACTCC+GGG | - | chr8_1:39818884-39818903 | None:intergenic | 50.0% |
| !! | ATTTCTGGTTCCAGAAGGCG+GGG | - | chr8_1:39818933-39818952 | None:intergenic | 50.0% |
| TCGGGCAACCTATAGGAAGA+CGG | + | chr8_1:39819008-39819027 | Msa1193470:CDS | 50.0% | |
| !! | CCAGGGGTACCAATGAACTT+GGG | + | chr8_1:39819118-39819137 | Msa1193470:CDS | 50.0% |
| AACAGCATCCTCGGGATGAT+TGG | - | chr8_1:39817844-39817863 | None:intergenic | 50.0% | |
| CATCGATCAACAGCATCCTC+GGG | - | chr8_1:39817852-39817871 | None:intergenic | 50.0% | |
| CCATCGATCAACAGCATCCT+CGG | - | chr8_1:39817853-39817872 | None:intergenic | 50.0% | |
| CGAGGATGCTGTTGATCGAT+GGG | + | chr8_1:39817851-39817870 | Msa1193470:CDS | 50.0% | |
| AAAATTGCGGCTGATGTGCC+CGG | + | chr8_1:39817876-39817895 | Msa1193470:CDS | 50.0% | |
| GGGCTTCCGGTTCTTATCAT+TGG | + | chr8_1:39818054-39818073 | Msa1193470:CDS | 50.0% | |
| !! | GCTTTAGGGTCTACTAGCGT+TGG | + | chr8_1:39818212-39818231 | Msa1193470:intron | 50.0% |
| CTTATGGGCGTGGAGAAGTA+TGG | + | chr8_1:39818434-39818453 | Msa1193470:CDS | 50.0% | |
| ! | GGCGTGGAGAAGTATGGAAA+GGG | + | chr8_1:39818440-39818459 | Msa1193470:CDS | 50.0% |
| GTCGCCTATGTCAAACCTCA+AGG | + | chr8_1:39818599-39818618 | Msa1193470:CDS | 50.0% | |
| TGACCGGTAATTGGTCCTTG+AGG | - | chr8_1:39818617-39818636 | None:intergenic | 50.0% | |
| TGGAGCTTGAGGAGTTTGTG+TGG | - | chr8_1:39818666-39818685 | None:intergenic | 50.0% | |
| ACTCCTCAAGCTCCATCTGT+TGG | + | chr8_1:39818671-39818690 | Msa1193470:CDS | 50.0% | |
| GTACCAACAGATGGAGCTTG+AGG | - | chr8_1:39818677-39818696 | None:intergenic | 50.0% | |
| TGGCGAAGCAGCATACATTC+CGG | - | chr8_1:39818732-39818751 | None:intergenic | 50.0% | |
| ! | TATGCTGCTTCGCCATCTGT+TGG | + | chr8_1:39818737-39818756 | Msa1193470:CDS | 50.0% |
| AATCCTCCAATCCCATGTGC+TGG | + | chr8_1:39818776-39818795 | Msa1193470:CDS | 50.0% | |
| GAGCGAAAACTCCAGCACAT+GGG | - | chr8_1:39818790-39818809 | None:intergenic | 50.0% | |
| ! | AGTTTTCGCTCGTCCTAGAG+AGG | + | chr8_1:39818799-39818818 | Msa1193470:CDS | 50.0% |
| GGACCAACCTATAGAAGGAC+TGG | + | chr8_1:39818820-39818839 | Msa1193470:CDS | 50.0% | |
| !! | GGACTGGTTGTATCCGAAGT+TGG | + | chr8_1:39818836-39818855 | Msa1193470:CDS | 50.0% |
| ! | GCTTGAGGAGCATAAACTCC+GGG | - | chr8_1:39818884-39818903 | None:intergenic | 50.0% |
| !! | ATTTCTGGTTCCAGAAGGCG+GGG | - | chr8_1:39818933-39818952 | None:intergenic | 50.0% |
| TCGGGCAACCTATAGGAAGA+CGG | + | chr8_1:39819008-39819027 | Msa1193470:CDS | 50.0% | |
| !! | CCAGGGGTACCAATGAACTT+GGG | + | chr8_1:39819118-39819137 | Msa1193470:CDS | 50.0% |
| ! | TGCATTGGCCAATCATCCCG+AGG | + | chr8_1:39817833-39817852 | Msa1193470:CDS | 55.0% |
| CCGAGGATGCTGTTGATCGA+TGG | + | chr8_1:39817850-39817869 | Msa1193470:CDS | 55.0% | |
| AAATTGCGGCTGATGTGCCC+GGG | + | chr8_1:39817877-39817896 | Msa1193470:CDS | 55.0% | |
| ! | GGGCGTGGAGAAGTATGGAA+AGG | + | chr8_1:39818439-39818458 | Msa1193470:CDS | 55.0% |
| GAAGCAGCATACATTCCGGC+AGG | - | chr8_1:39818728-39818747 | None:intergenic | 55.0% | |
| ACTCCAGCACATGGGATTGG+AGG | - | chr8_1:39818782-39818801 | None:intergenic | 55.0% | |
| CGAGCGAAAACTCCAGCACA+TGG | - | chr8_1:39818791-39818810 | None:intergenic | 55.0% | |
| GTATCCGAAGTTGGCACTCC+AGG | + | chr8_1:39818845-39818864 | Msa1193470:CDS | 55.0% | |
| CCAGGAATTCTGACTGCTCC+CGG | + | chr8_1:39818863-39818882 | Msa1193470:CDS | 55.0% | |
| GATCATCCAGCCCCACTTTC+TGG | + | chr8_1:39818959-39818978 | Msa1193470:CDS | 55.0% | |
| CCTATAGGTTGCCCGATCCA+AGG | - | chr8_1:39819004-39819023 | None:intergenic | 55.0% | |
| CCTTGGATCGGGCAACCTAT+AGG | + | chr8_1:39819001-39819020 | Msa1193470:CDS | 55.0% | |
| CGGGCAACCTATAGGAAGAC+GGG | + | chr8_1:39819009-39819028 | Msa1193470:CDS | 55.0% | |
| TATCTGCTTTCGGCGCTGCA+GGG | + | chr8_1:39819035-39819054 | Msa1193470:CDS | 55.0% | |
| !! | GCCAGGGGTACCAATGAACT+TGG | + | chr8_1:39819117-39819136 | Msa1193470:CDS | 55.0% |
| CCCAAGTTCATTGGTACCCC+TGG | - | chr8_1:39819121-39819140 | None:intergenic | 55.0% | |
| ! | TGCATTGGCCAATCATCCCG+AGG | + | chr8_1:39817833-39817852 | Msa1193470:CDS | 55.0% |
| CCGAGGATGCTGTTGATCGA+TGG | + | chr8_1:39817850-39817869 | Msa1193470:CDS | 55.0% | |
| AAATTGCGGCTGATGTGCCC+GGG | + | chr8_1:39817877-39817896 | Msa1193470:CDS | 55.0% | |
| ! | GGGCGTGGAGAAGTATGGAA+AGG | + | chr8_1:39818439-39818458 | Msa1193470:CDS | 55.0% |
| GAAGCAGCATACATTCCGGC+AGG | - | chr8_1:39818728-39818747 | None:intergenic | 55.0% | |
| ACTCCAGCACATGGGATTGG+AGG | - | chr8_1:39818782-39818801 | None:intergenic | 55.0% | |
| CGAGCGAAAACTCCAGCACA+TGG | - | chr8_1:39818791-39818810 | None:intergenic | 55.0% | |
| GTATCCGAAGTTGGCACTCC+AGG | + | chr8_1:39818845-39818864 | Msa1193470:CDS | 55.0% | |
| CCAGGAATTCTGACTGCTCC+CGG | + | chr8_1:39818863-39818882 | Msa1193470:CDS | 55.0% | |
| GATCATCCAGCCCCACTTTC+TGG | + | chr8_1:39818959-39818978 | Msa1193470:CDS | 55.0% | |
| CCTATAGGTTGCCCGATCCA+AGG | - | chr8_1:39819004-39819023 | None:intergenic | 55.0% | |
| CCTTGGATCGGGCAACCTAT+AGG | + | chr8_1:39819001-39819020 | Msa1193470:CDS | 55.0% | |
| CGGGCAACCTATAGGAAGAC+GGG | + | chr8_1:39819009-39819028 | Msa1193470:CDS | 55.0% | |
| TATCTGCTTTCGGCGCTGCA+GGG | + | chr8_1:39819035-39819054 | Msa1193470:CDS | 55.0% | |
| !! | GCCAGGGGTACCAATGAACT+TGG | + | chr8_1:39819117-39819136 | Msa1193470:CDS | 55.0% |
| CCCAAGTTCATTGGTACCCC+TGG | - | chr8_1:39819121-39819140 | None:intergenic | 55.0% | |
| ! | AATCCTCTGGCTCCACCTGC+CGG | + | chr8_1:39818710-39818729 | Msa1193470:CDS | 60.0% |
| GCAGCATACATTCCGGCAGG+TGG | - | chr8_1:39818725-39818744 | None:intergenic | 60.0% | |
| CCGGGAGCAGTCAGAATTCC+TGG | - | chr8_1:39818866-39818885 | None:intergenic | 60.0% | |
| CCAAGTCCAGAAAGTGGGGC+TGG | - | chr8_1:39818968-39818987 | None:intergenic | 60.0% | |
| CCAGCCCCACTTTCTGGACT+TGG | + | chr8_1:39818965-39818984 | Msa1193470:CDS | 60.0% | |
| GTATCTGCTTTCGGCGCTGC+AGG | + | chr8_1:39819034-39819053 | Msa1193470:CDS | 60.0% | |
| GCAGGGATTCCTTCTGCTCC+CGG | + | chr8_1:39819052-39819071 | Msa1193470:CDS | 60.0% | |
| TCCTTCTGCTCCCGGACACA+TGG | + | chr8_1:39819060-39819079 | Msa1193470:CDS | 60.0% | |
| GCTCCCGGACACATGGCTTA+TGG | + | chr8_1:39819067-39819086 | Msa1193470:CDS | 60.0% | |
| ! | AATCCTCTGGCTCCACCTGC+CGG | + | chr8_1:39818710-39818729 | Msa1193470:CDS | 60.0% |
| GCAGCATACATTCCGGCAGG+TGG | - | chr8_1:39818725-39818744 | None:intergenic | 60.0% | |
| CCGGGAGCAGTCAGAATTCC+TGG | - | chr8_1:39818866-39818885 | None:intergenic | 60.0% | |
| CCAAGTCCAGAAAGTGGGGC+TGG | - | chr8_1:39818968-39818987 | None:intergenic | 60.0% | |
| CCAGCCCCACTTTCTGGACT+TGG | + | chr8_1:39818965-39818984 | Msa1193470:CDS | 60.0% | |
| GTATCTGCTTTCGGCGCTGC+AGG | + | chr8_1:39819034-39819053 | Msa1193470:CDS | 60.0% | |
| GCAGGGATTCCTTCTGCTCC+CGG | + | chr8_1:39819052-39819071 | Msa1193470:CDS | 60.0% | |
| TCCTTCTGCTCCCGGACACA+TGG | + | chr8_1:39819060-39819079 | Msa1193470:CDS | 60.0% | |
| GCTCCCGGACACATGGCTTA+TGG | + | chr8_1:39819067-39819086 | Msa1193470:CDS | 60.0% | |
| ATTCCGGCAGGTGGAGCCAG+AGG | - | chr8_1:39818716-39818735 | None:intergenic | 65.0% | |
| TATGTTGCGGCCCCGCCTTC+TGG | + | chr8_1:39818920-39818939 | Msa1193470:CDS | 65.0% | |
| GCCATGTGTCCGGGAGCAGA+AGG | - | chr8_1:39819064-39819083 | None:intergenic | 65.0% | |
| ATTCCGGCAGGTGGAGCCAG+AGG | - | chr8_1:39818716-39818735 | None:intergenic | 65.0% | |
| TATGTTGCGGCCCCGCCTTC+TGG | + | chr8_1:39818920-39818939 | Msa1193470:CDS | 65.0% | |
| GCCATGTGTCCGGGAGCAGA+AGG | - | chr8_1:39819064-39819083 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 39817771 | 39819180 | 39817771 | ID=Msa1193470;Name=Msa1193470 |
| chr8_1 | mRNA | 39817771 | 39819180 | 39817771 | ID=Msa1193470-mRNA-1;Parent=Msa1193470;Name=Msa1193470-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|358 |
| chr8_1 | exon | 39817771 | 39818093 | 39817771 | ID=Msa1193470-mRNA-1:exon:13010;Parent=Msa1193470-mRNA-1 |
| chr8_1 | exon | 39818427 | 39819180 | 39818427 | ID=Msa1193470-mRNA-1:exon:13011;Parent=Msa1193470-mRNA-1 |
| chr8_1 | CDS | 39817771 | 39818093 | 39817771 | ID=Msa1193470-mRNA-1:cds;Parent=Msa1193470-mRNA-1 |
| chr8_1 | CDS | 39818427 | 39819180 | 39818427 | ID=Msa1193470-mRNA-1:cds;Parent=Msa1193470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
