Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1196770 | XP_013445934.1 | 58.424 | 368 | 51 | 8 | 1 | 362 | 1 | 272 | 2.37e-128 | 379 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1196770 | sp|Q9FNN6|SRM1_ARATH | 47.925 | 265 | 98 | 10 | 11 | 241 | 12 | 270 | 1.32e-57 | 192 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1196770 | A0A072TS07 | 58.424 | 368 | 51 | 8 | 1 | 362 | 1 | 272 | 1.13e-128 | 379 |
Co-expression Network
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1196770 | MtrunA17_Chr8g0365011 | 56.579 | 380 | 51 | 9 | 1 | 362 | 1 | 284 | 6.45e-129 | 370 |
Msa1196770 | MtrunA17_Chr1g0162081 | 49.834 | 301 | 85 | 10 | 1 | 269 | 3 | 269 | 3.10e-74 | 232 |
Msa1196770 | MtrunA17_Chr8g0364741 | 70.312 | 128 | 26 | 3 | 1 | 117 | 1 | 127 | 1.18e-51 | 168 |
Msa1196770 | MtrunA17_Chr1g0210471 | 51.124 | 178 | 62 | 3 | 10 | 170 | 23 | 192 | 2.70e-46 | 158 |
Msa1196770 | MtrunA17_Chr4g0062741 | 36.697 | 327 | 110 | 14 | 11 | 274 | 8 | 300 | 3.63e-45 | 157 |
Msa1196770 | MtrunA17_Chr5g0436501 | 40.724 | 221 | 114 | 4 | 10 | 219 | 26 | 240 | 7.64e-42 | 147 |
Msa1196770 | MtrunA17_Chr3g0104071 | 46.703 | 182 | 74 | 5 | 6 | 169 | 38 | 214 | 1.41e-41 | 148 |
Msa1196770 | MtrunA17_Chr5g0429521 | 43.229 | 192 | 91 | 5 | 11 | 187 | 29 | 217 | 1.67e-41 | 147 |
Msa1196770 | MtrunA17_Chr8g0364731 | 52.761 | 163 | 49 | 2 | 109 | 265 | 10 | 150 | 2.40e-40 | 140 |
Msa1196770 | MtrunA17_Chr8g0364731 | 54.082 | 98 | 37 | 2 | 265 | 362 | 95 | 184 | 9.44e-22 | 91.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1196770 | AT5G08520.1 | 47.925 | 265 | 98 | 10 | 11 | 241 | 12 | 270 | 1.35e-58 | 192 |
Msa1196770 | AT5G23650.1 | 34.759 | 374 | 156 | 13 | 11 | 349 | 13 | 333 | 7.12e-44 | 155 |
Msa1196770 | AT5G04760.1 | 43.939 | 198 | 101 | 4 | 8 | 200 | 3 | 195 | 1.20e-42 | 148 |
Msa1196770 | AT2G38090.1 | 44.681 | 188 | 77 | 5 | 6 | 169 | 24 | 208 | 4.35e-41 | 146 |
Msa1196770 | AT1G49010.1 | 42.439 | 205 | 78 | 5 | 11 | 177 | 8 | 210 | 1.70e-40 | 145 |
Msa1196770 | AT5G58900.1 | 42.373 | 177 | 82 | 3 | 11 | 169 | 34 | 208 | 8.82e-39 | 140 |
Msa1196770 | AT3G11280.2 | 42.473 | 186 | 84 | 6 | 11 | 187 | 33 | 204 | 3.49e-38 | 137 |
Msa1196770 | AT3G11280.1 | 42.473 | 186 | 84 | 6 | 11 | 187 | 33 | 204 | 3.49e-38 | 137 |
Msa1196770 | AT5G05790.2 | 43.094 | 181 | 76 | 4 | 7 | 169 | 27 | 198 | 9.68e-37 | 134 |
Msa1196770 | AT5G05790.1 | 43.094 | 181 | 76 | 4 | 7 | 169 | 27 | 198 | 9.68e-37 | 134 |
Find 118 sgRNAs with CRISPR-Local
Find 308 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAAACTCCAGCACGTGGGAT+TGG | 0.444600 | 8_1:-46456237 | None:intergenic |
AAAATTGCGGCTGATGTGCC+CGG | 0.461117 | 8_1:+46455113 | Msa1196770:CDS |
AAACTCCGAGTCCAGCAAGT+GGG | 0.613833 | 8_1:-46456425 | None:intergenic |
AAAGAATCATGATCTGGCAG+AGG | 0.603467 | 8_1:-46455212 | None:intergenic |
AAATTGCGGCTGATGTGCCC+GGG | 0.599032 | 8_1:+46455114 | Msa1196770:CDS |
AAATTTCTAGTTCCAACAGA+TGG | 0.578638 | 8_1:-46456204 | None:intergenic |
AAATTTCTGGTTCCAGAAGG+CGG | 0.568201 | 8_1:-46456387 | None:intergenic |
AACAGCATCCTCGGGATTAT+TGG | 0.247617 | 8_1:-46455078 | None:intergenic |
AACCTCAAGGGCCAATTACC+GGG | 0.512811 | 8_1:+46456055 | Msa1196770:CDS |
AACTCCGAGTCCAGCAAGTG+GGG | 0.637926 | 8_1:-46456424 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
TACTAATTAAGGTGAAGCTT+TGG | + | chr8_1:46455437-46455456 | Msa1196770:intron | 30.0% | |
ACTAATTAAGGTGAAGCTTT+GGG | + | chr8_1:46455438-46455457 | Msa1196770:intron | 30.0% | |
GTAAAACAAAGCTTAGCATA+TGG | - | chr8_1:46455791-46455810 | None:intergenic | 30.0% | |
TCTGTTGGAACTAGAAATTT+AGG | + | chr8_1:46456207-46456226 | Msa1196770:CDS | 30.0% | |
TGGATGATCATCTAAATTTC+TGG | - | chr8_1:46456403-46456422 | None:intergenic | 30.0% | |
TACTAATTAAGGTGAAGCTT+TGG | + | chr8_1:46455437-46455456 | Msa1196770:intron | 30.0% | |
ACTAATTAAGGTGAAGCTTT+GGG | + | chr8_1:46455438-46455457 | Msa1196770:intron | 30.0% | |
GTAAAACAAAGCTTAGCATA+TGG | - | chr8_1:46455791-46455810 | None:intergenic | 30.0% | |
TCTGTTGGAACTAGAAATTT+AGG | + | chr8_1:46456207-46456226 | Msa1196770:CDS | 30.0% | |
TGGATGATCATCTAAATTTC+TGG | - | chr8_1:46456403-46456422 | None:intergenic | 30.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_1 | gene | 46455008 | 46456635 | 46455008 | ID=Msa1196770;Name=Msa1196770 |
chr8_1 | mRNA | 46455008 | 46456635 | 46455008 | ID=Msa1196770-mRNA-1;Parent=Msa1196770;Name=Msa1196770-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|362 |
chr8_1 | exon | 46455008 | 46455330 | 46455008 | ID=Msa1196770-mRNA-1:exon:14789;Parent=Msa1196770-mRNA-1 |
chr8_1 | exon | 46455870 | 46456635 | 46455870 | ID=Msa1196770-mRNA-1:exon:14790;Parent=Msa1196770-mRNA-1 |
chr8_1 | CDS | 46455008 | 46455330 | 46455008 | ID=Msa1196770-mRNA-1:cds;Parent=Msa1196770-mRNA-1 |
chr8_1 | CDS | 46455870 | 46456635 | 46455870 | ID=Msa1196770-mRNA-1:cds;Parent=Msa1196770-mRNA-1 |
Gene Sequence |
>Msa1196770 ATGGATGAAGTGGGTAGTAGAAGCTATGAGTGGAGCAGCGAGCAAAATAAATTGTTCGAAAATGCATTGGCCAATAATCCCGAGGATGCTGTTGATCGATGGGAGAAAATTGCGGCTGATGTGCCCGGGAAAACTTTAGAAGAGATTAAACATCACTATGAGATTTTGGTGTATGATATCCACAACATTGAATCTGGTTTTGTGCCTCTGCCAGATCATGATTCTTTTTCAAAGAGCTCAACAAAGCGTGCTGGTGAAAGAGGAGCTGTGAAAAAGGGAACTAAGGCTACCGGTTCTTATCATTGGACAGAAGACGAACACAGGTTATTTCTTATGGGCGTGGAGAAGTATGGAAAGGGTAAATGGCGAAAAATATCAGAGAACTATGTGGTGACAAGAACACATACACAAGTAGCAAGTCATGCTCAGAAATACTTCAAAGGTCTGAATTCAACGAAAGAGAAGAAGGAAAGTAGGCGATCCAGAATACACGATATCACCTATGTCGAACCTCAAGGGCCAATTACCGGGCAAGCAATTGATTCTACAGCAAATTCTGCCGGACAAACGGCCACACAAACTCCTCAAGCTCCATCTGTTGGTACCAGAACTTCAAATTATCCTCTGGCTCCACCTGCCGGAATGTATGCTGCTTCGCCATCTGTTGGAACTAGAAATTTAGGTAATCCTCCAATCCCACGTGCTGGAGTTTTCGCTCCTCCTAGAGAGGACCAACCTATAGGAGAACTGGTTGTATCCGAAGTTGGCACTCCAGGAATTCTGACTGCTCCCGGAGTTTATGCTCCTCAAGCTCCACCTACTGAAATGTATGTTGCAGCCCCGCCTTCTGGAACCAGAAATTTAGATGATCATCCAGCCCCACTTGCTGGACTCGGAGTTTATGATGTGCCTTGGATCGGGCAACCTATAGGAAGACGGGTTGTATCTGCTTTCGGCGCTGCAGGGTTTCCTTCTGCTCCCGGACACATGGCTTATGGTATTGGACCAGTTTCTTGGACAAATATGCCAGGGGTACCAATGAACTTGGGTCCTATGACATTTCCCATGCAAAATACATTTGCTCACTAA |
Protein sequence |
>Msa1196770 MDEVGSRSYEWSSEQNKLFENALANNPEDAVDRWEKIAADVPGKTLEEIKHHYEILVYDIHNIESGFVPLPDHDSFSKSSTKRAGERGAVKKGTKATGSYHWTEDEHRLFLMGVEKYGKGKWRKISENYVVTRTHTQVASHAQKYFKGLNSTKEKKESRRSRIHDITYVEPQGPITGQAIDSTANSAGQTATQTPQAPSVGTRTSNYPLAPPAGMYAASPSVGTRNLGNPPIPRAGVFAPPREDQPIGELVVSEVGTPGILTAPGVYAPQAPPTEMYVAAPPSGTRNLDDHPAPLAGLGVYDVPWIGQPIGRRVVSAFGAAGFPSAPGHMAYGIGPVSWTNMPGVPMNLGPMTFPMQNTFAH* |