AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1196770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1196770 MtrunA17_Chr8g0365011 56.579 380 51 9 1 362 1 284 6.45e-129 370
Msa1196770 MtrunA17_Chr1g0162081 49.834 301 85 10 1 269 3 269 3.10e-74 232
Msa1196770 MtrunA17_Chr8g0364741 70.312 128 26 3 1 117 1 127 1.18e-51 168
Msa1196770 MtrunA17_Chr1g0210471 51.124 178 62 3 10 170 23 192 2.70e-46 158
Msa1196770 MtrunA17_Chr4g0062741 36.697 327 110 14 11 274 8 300 3.63e-45 157
Msa1196770 MtrunA17_Chr5g0436501 40.724 221 114 4 10 219 26 240 7.64e-42 147
Msa1196770 MtrunA17_Chr3g0104071 46.703 182 74 5 6 169 38 214 1.41e-41 148
Msa1196770 MtrunA17_Chr5g0429521 43.229 192 91 5 11 187 29 217 1.67e-41 147
Msa1196770 MtrunA17_Chr8g0364731 52.761 163 49 2 109 265 10 150 2.40e-40 140
Msa1196770 MtrunA17_Chr8g0364731 54.082 98 37 2 265 362 95 184 9.44e-22 91.3
Msa1196770 MtrunA17_Chr7g0241761 46.111 180 77 5 10 172 34 210 2.99e-39 141
Msa1196770 MtrunA17_Chr5g0432921 43.558 163 85 6 7 164 17 177 1.27e-29 113
Msa1196770 MtrunA17_Chr5g0432941 41.358 162 89 5 7 164 18 177 2.48e-28 110
Msa1196770 MtrunA17_Chr5g0440731 59.155 71 28 1 99 168 104 174 4.40e-22 94.7
Msa1196770 MtrunA17_Chr5g0440741 43.966 116 48 3 101 215 101 200 1.11e-21 93.6
Msa1196770 MtrunA17_Chr5g0409841 45.263 95 51 1 101 195 93 186 1.03e-20 89.7
Msa1196770 MtrunA17_Chr4g0055931 35.000 180 68 7 71 213 68 235 1.01e-19 89.0
Msa1196770 MtrunA17_Chr6g0488471 64.615 65 21 1 102 166 99 161 3.42e-19 86.7
Msa1196770 MtrunA17_Chr1g0155181 55.882 68 30 0 6 73 2 69 6.62e-19 80.5
Msa1196770 MtrunA17_Chr2g0331031 46.535 101 49 3 67 166 77 173 7.95e-19 86.7
Msa1196770 MtrunA17_Chr8g0389241 60.000 65 23 1 102 166 107 168 1.56e-18 84.7
Msa1196770 MtrunA17_Chr3g0144631 52.308 65 31 0 11 75 16 80 2.03e-17 76.3
Msa1196770 MtrunA17_Chr3g0141601 54.545 66 30 0 8 73 4 69 2.80e-17 76.3
Msa1196770 MtrunA17_Chr4g0059701 75.556 45 11 0 102 146 86 130 1.18e-16 79.3
Msa1196770 MtrunA17_Chr1g0192061 45.192 104 50 4 63 162 22 122 1.24e-16 77.4
Msa1196770 MtrunA17_Chr3g0092621 48.780 82 35 2 102 178 86 165 1.76e-16 76.6
Msa1196770 MtrunA17_Chr5g0415191 59.091 66 25 1 102 167 104 167 2.08e-16 79.0
Msa1196770 MtrunA17_Chr5g0404101 59.375 64 26 0 8 71 16 79 2.12e-16 73.9
Msa1196770 MtrunA17_Chr5g0409831 50.633 79 36 2 91 168 70 146 2.49e-15 74.7
Msa1196770 MtrunA17_Chr3g0135671 42.697 89 48 2 102 188 93 180 7.89e-15 73.2
Msa1196770 MtrunA17_Chr6g0449111 50.725 69 34 0 5 73 4 72 1.26e-14 68.6
Msa1196770 MtrunA17_Chr6g0452791 68.889 45 14 0 102 146 82 126 3.30e-14 70.1
Msa1196770 MtrunA17_Chr7g0255841 50.000 70 35 0 14 83 15 84 9.95e-14 66.2
Msa1196770 MtrunA17_Chr8g0373131 42.857 70 39 1 11 80 5 73 7.71e-13 63.2
Msa1196770 MtrunA17_Chr8g0373111 43.478 69 38 1 11 79 5 72 8.21e-13 63.2
Msa1196770 MtrunA17_Chr8g0373121 43.478 69 38 1 11 79 5 72 8.21e-13 63.2
Msa1196770 MtrunA17_Chr3g0113121 45.570 79 38 1 101 174 96 174 1.74e-12 66.2
Msa1196770 MtrunA17_Chr5g0404301 50.820 61 29 1 11 71 4 63 3.28e-12 61.2
Msa1196770 MtrunA17_Chr8g0370131 34.234 111 51 2 102 207 105 198 7.93e-12 64.3
Msa1196770 MtrunA17_Chr3g0081631 47.826 69 35 1 6 73 5 73 1.09e-11 60.5
Msa1196770 MtrunA17_Chr3g0141641 48.387 62 30 2 11 71 3 63 3.93e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1196770 AT5G08520.1 47.925 265 98 10 11 241 12 270 1.35e-58 192
Msa1196770 AT5G23650.1 34.759 374 156 13 11 349 13 333 7.12e-44 155
Msa1196770 AT5G04760.1 43.939 198 101 4 8 200 3 195 1.20e-42 148
Msa1196770 AT2G38090.1 44.681 188 77 5 6 169 24 208 4.35e-41 146
Msa1196770 AT1G49010.1 42.439 205 78 5 11 177 8 210 1.70e-40 145
Msa1196770 AT5G58900.1 42.373 177 82 3 11 169 34 208 8.82e-39 140
Msa1196770 AT3G11280.2 42.473 186 84 6 11 187 33 204 3.49e-38 137
Msa1196770 AT3G11280.1 42.473 186 84 6 11 187 33 204 3.49e-38 137
Msa1196770 AT5G05790.2 43.094 181 76 4 7 169 27 198 9.68e-37 134
Msa1196770 AT5G05790.1 43.094 181 76 4 7 169 27 198 9.68e-37 134
Msa1196770 AT5G01200.1 40.526 190 84 5 7 169 26 213 2.40e-34 127
Msa1196770 AT4G09450.1 41.875 160 82 5 10 167 6 156 8.30e-26 103
Msa1196770 AT3G10580.2 37.949 195 98 7 11 198 8 186 4.36e-24 100
Msa1196770 AT3G10580.1 37.949 195 98 7 11 198 8 186 7.23e-24 100
Msa1196770 AT1G75250.2 52.857 70 33 0 11 80 12 81 1.13e-18 80.5
Msa1196770 AT3G10590.1 35.556 180 94 7 11 173 7 181 2.25e-18 83.2
Msa1196770 AT1G75250.1 52.857 70 33 0 11 80 12 81 3.47e-18 80.1
Msa1196770 AT5G47390.1 56.579 76 25 2 91 166 93 160 3.81e-18 85.1
Msa1196770 AT4G39250.1 52.381 63 30 0 11 73 14 76 2.38e-17 77.0
Msa1196770 AT3G16350.1 52.273 88 30 3 59 146 108 183 2.81e-17 82.8
Msa1196770 AT5G61620.1 57.576 66 26 1 102 167 110 173 6.03e-17 81.3
Msa1196770 AT1G70000.1 63.636 66 22 1 102 167 100 163 1.84e-16 79.0
Msa1196770 AT1G70000.2 63.636 66 22 1 102 167 100 163 1.84e-16 79.0
Msa1196770 AT5G56840.1 56.923 65 27 1 102 166 93 156 2.46e-16 77.8
Msa1196770 AT1G74840.2 68.889 45 14 0 102 146 98 142 5.11e-16 77.0
Msa1196770 AT1G74840.1 68.889 45 14 0 102 146 98 142 6.23e-16 77.4
Msa1196770 AT1G19510.1 46.479 71 38 0 14 84 15 85 1.17e-15 72.4
Msa1196770 AT2G21650.1 47.222 72 38 0 11 82 14 85 4.42e-15 70.9
Msa1196770 AT1G19000.2 66.667 45 15 0 102 146 104 148 1.57e-14 73.6
Msa1196770 AT1G19000.1 66.667 45 15 0 102 146 104 148 1.57e-14 73.6
Msa1196770 AT2G18328.1 52.632 57 27 0 15 71 15 71 3.79e-13 64.7
Msa1196770 AT3G10585.1 34.503 171 71 7 11 173 7 144 1.62e-11 62.8
Msa1196770 AT3G10595.1 24.590 183 122 5 11 193 6 172 2.85e-11 62.4

Find 118 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAACATCACTATGAGATTT+TGG 0.187100 8_1:+46455154 Msa1196770:CDS
TGGATGATCATCTAAATTTC+TGG 0.206174 8_1:-46456400 None:intergenic
GATGAGCAGGTTATTTCTTA+TGG 0.229350 8_1:+46455861 Msa1196770:intron
TCAATTGCTTGCCCGGTAAT+TGG 0.238961 8_1:-46456066 None:intergenic
AACAGCATCCTCGGGATTAT+TGG 0.247617 8_1:-46455078 None:intergenic
TATGTTGCAGCCCCGCCTTC+TGG 0.274061 8_1:+46456375 Msa1196770:CDS
GTATCTGCTTTCGGCGCTGC+AGG 0.317922 8_1:+46456489 Msa1196770:CDS
CAGAGGATAATTTGAAGTTC+TGG 0.320137 8_1:-46456151 None:intergenic
TCTGTTGGAACTAGAAATTT+AGG 0.321437 8_1:+46456207 Msa1196770:CDS
ATGGTATTGGACCAGTTTCT+TGG 0.328363 8_1:+46456541 Msa1196770:CDS
TGAAAGAGGAGCTGTGAAAA+AGG 0.334187 8_1:+46455262 Msa1196770:CDS
CCGGGAGCAGTCAGAATTCC+TGG 0.337631 8_1:-46456318 None:intergenic
GATCATCCAGCCCCACTTGC+TGG 0.353540 8_1:+46456414 Msa1196770:CDS
ATGAGCAGGTTATTTCTTAT+GGG 0.354456 8_1:+46455862 Msa1196770:intron
GGCATATTTGTCCAAGAAAC+TGG 0.357689 8_1:-46456552 None:intergenic
GATATCCACAACATTGAATC+TGG 0.364726 8_1:+46455182 Msa1196770:CDS
AGGCTACCGGTTCTTATCAT+TGG 0.374780 8_1:+46455291 Msa1196770:CDS
CTTATGGGCGTGGAGAAGTA+TGG 0.382631 8_1:+46455877 Msa1196770:CDS
GCTCCCGGACACATGGCTTA+TGG 0.384505 8_1:+46456522 Msa1196770:CDS
GGACACATGGCTTATGGTAT+TGG 0.393934 8_1:+46456528 Msa1196770:CDS
GAACCTCAAGGGCCAATTAC+CGG 0.396923 8_1:+46456054 Msa1196770:CDS
AGACGGGTTGTATCTGCTTT+CGG 0.398815 8_1:+46456480 Msa1196770:CDS
GCAGGGTTTCCTTCTGCTCC+CGG 0.401027 8_1:+46456507 Msa1196770:CDS
GATACAACCAGTTCTCCTAT+AGG 0.413028 8_1:-46456282 None:intergenic
CCAGCCCCACTTGCTGGACT+CGG 0.416423 8_1:+46456420 Msa1196770:CDS
AGCAAATTCTGCCGGACAAA+CGG 0.424545 8_1:+46456095 Msa1196770:CDS
ATAGGTGATATCGTGTATTC+TGG 0.431284 8_1:-46456028 None:intergenic
AGAAGTATGGAAAGGGTAAA+TGG 0.436340 8_1:+46455890 Msa1196770:CDS
CCTTGGATCGGGCAACCTAT+AGG 0.440600 8_1:+46456456 Msa1196770:CDS
GCCAGGGGTACCAATGAACT+TGG 0.443338 8_1:+46456572 Msa1196770:CDS
AAAACTCCAGCACGTGGGAT+TGG 0.444600 8_1:-46456237 None:intergenic
CCTAGAGAGGACCAACCTAT+AGG 0.444649 8_1:+46456267 Msa1196770:CDS
GTTTATGATGTGCCTTGGAT+CGG 0.445975 8_1:+46456444 Msa1196770:CDS
CCGAGTCCAGCAAGTGGGGC+TGG 0.451356 8_1:-46456420 None:intergenic
AGTTTGTGTGGCCGTTTGTC+CGG 0.453502 8_1:-46456106 None:intergenic
GATACAACCCGTCTTCCTAT+AGG 0.454270 8_1:-46456471 None:intergenic
TTCTGTCCAATGATAAGAAC+CGG 0.457832 8_1:-46455297 None:intergenic
CCATCGATCAACAGCATCCT+CGG 0.458092 8_1:-46455087 None:intergenic
TCCTTCTGCTCCCGGACACA+TGG 0.459304 8_1:+46456515 Msa1196770:CDS
AATTTCTGGTTCCAGAAGGC+GGG 0.459732 8_1:-46456386 None:intergenic
CCTATAGGTTGGTCCTCTCT+AGG 0.460076 8_1:-46456267 None:intergenic
AAAATTGCGGCTGATGTGCC+CGG 0.461117 8_1:+46455113 Msa1196770:CDS
TTTATGATGTGCCTTGGATC+GGG 0.462141 8_1:+46456445 Msa1196770:CDS
GGACCAACCTATAGGAGAAC+TGG 0.467312 8_1:+46456275 Msa1196770:CDS
GTCATAGGACCCAAGTTCAT+TGG 0.473573 8_1:-46456582 None:intergenic
CCCAAGTTCATTGGTACCCC+TGG 0.474063 8_1:-46456573 None:intergenic
CGAAAGAGAAGAAGGAAAGT+AGG 0.474467 8_1:+46456001 Msa1196770:CDS
TGTAGAATCAATTGCTTGCC+CGG 0.476569 8_1:-46456073 None:intergenic
TCGGAGTTTATGATGTGCCT+TGG 0.477536 8_1:+46456439 Msa1196770:CDS
TATCCTCTGGCTCCACCTGC+CGG 0.481371 8_1:+46456165 Msa1196770:CDS
TATCTGCTTTCGGCGCTGCA+GGG 0.484566 8_1:+46456490 Msa1196770:CDS
GTATCCGAAGTTGGCACTCC+AGG 0.488034 8_1:+46456300 Msa1196770:CDS
CCAGGAATTCTGACTGCTCC+CGG 0.491706 8_1:+46456318 Msa1196770:CDS
CAGGTTATTTCTTATGGGCG+TGG 0.501373 8_1:+46455867 Msa1196770:intron
TAAATTGTTCGAAAATGCAT+TGG 0.506339 8_1:+46455055 Msa1196770:CDS
ACTCCAGCACGTGGGATTGG+AGG 0.509106 8_1:-46456234 None:intergenic
ACAAAGCGTGCTGGTGAAAG+AGG 0.509612 8_1:+46455248 Msa1196770:CDS
AACCTCAAGGGCCAATTACC+GGG 0.512811 8_1:+46456055 Msa1196770:CDS
AATCAAAATAATGGATGAAG+TGG 0.514101 8_1:+46454998 None:intergenic
CAGAACTTCAAATTATCCTC+TGG 0.519752 8_1:+46456152 Msa1196770:CDS
AATACCATAAGCCATGTGTC+CGG 0.520964 8_1:-46456526 None:intergenic
CGAGGATGCTGTTGATCGAT+GGG 0.525087 8_1:+46455088 Msa1196770:CDS
CCGAGGATGCTGTTGATCGA+TGG 0.527921 8_1:+46455087 Msa1196770:CDS
GGCGTGGAGAAGTATGGAAA+GGG 0.531559 8_1:+46455883 Msa1196770:CDS
TGGCGAAGCAGCATACATTC+CGG 0.533982 8_1:-46456184 None:intergenic
GCCATGTGTCCGGGAGCAGA+AGG 0.540860 8_1:-46456516 None:intergenic
GTTTCTTGGACAAATATGCC+AGG 0.542042 8_1:+46456555 Msa1196770:CDS
CATCGATCAACAGCATCCTC+GGG 0.542757 8_1:-46455086 None:intergenic
AATCCTCCAATCCCACGTGC+TGG 0.542954 8_1:+46456231 Msa1196770:CDS
GCTTGAGGAGCATAAACTCC+GGG 0.545991 8_1:-46456336 None:intergenic
GAATTCAACGAAAGAGAAGA+AGG 0.547173 8_1:+46455993 Msa1196770:CDS
GAAGTTCTGGTACCAACAGA+TGG 0.547709 8_1:-46456138 None:intergenic
GAACTGGTTGTATCCGAAGT+TGG 0.550235 8_1:+46456291 Msa1196770:CDS
CATGCTCAGAAATACTTCAA+AGG 0.551854 8_1:+46455967 Msa1196770:CDS
ATACCATAAGCCATGTGTCC+GGG 0.552377 8_1:-46456525 None:intergenic
GATTCTACAGCAAATTCTGC+CGG 0.557661 8_1:+46456087 Msa1196770:CDS
TATGCTGCTTCGCCATCTGT+TGG 0.563547 8_1:+46456192 Msa1196770:CDS
CCTATAGGTTGCCCGATCCA+AGG 0.564457 8_1:-46456456 None:intergenic
CAAAACCAGATTCAATGTTG+TGG 0.566485 8_1:-46455187 None:intergenic
GAAGCAGCATACATTCCGGC+AGG 0.568137 8_1:-46456180 None:intergenic
AAATTTCTGGTTCCAGAAGG+CGG 0.568201 8_1:-46456387 None:intergenic
ATTTCAGTAGGTGGAGCTTG+AGG 0.570653 8_1:-46456351 None:intergenic
AAGAGCTCAACAAAGCGTGC+TGG 0.576719 8_1:+46455239 Msa1196770:CDS
AAATTTCTAGTTCCAACAGA+TGG 0.578638 8_1:-46456204 None:intergenic
TGGCCCTTGAGGTTCGACAT+AGG 0.580396 8_1:-46456046 None:intergenic
ATCACCTATGTCGAACCTCA+AGG 0.586168 8_1:+46456042 Msa1196770:CDS
ATTTCTGGTTCCAGAAGGCG+GGG 0.586635 8_1:-46456385 None:intergenic
AATTCCTGGAGTGCCAACTT+CGG 0.593276 8_1:-46456304 None:intergenic
TTTCTTGGACAAATATGCCA+GGG 0.593394 8_1:+46456556 Msa1196770:CDS
GCAGCATACATTCCGGCAGG+TGG 0.596107 8_1:-46456177 None:intergenic
GTACCAACAGATGGAGCTTG+AGG 0.598203 8_1:-46456129 None:intergenic
AAATTGCGGCTGATGTGCCC+GGG 0.599032 8_1:+46455114 Msa1196770:CDS
CAACCAGTTCTCCTATAGGT+TGG 0.599335 8_1:-46456278 None:intergenic
TGCCCGGTAATTGGCCCTTG+AGG 0.600641 8_1:-46456057 None:intergenic
GCAACATACATTTCAGTAGG+TGG 0.602800 8_1:-46456360 None:intergenic
AAAGAATCATGATCTGGCAG+AGG 0.603467 8_1:-46455212 None:intergenic
TCTAAATTTCTGGTTCCAGA+AGG 0.603646 8_1:-46456390 None:intergenic
GGGCGTGGAGAAGTATGGAA+AGG 0.603697 8_1:+46455882 Msa1196770:CDS
TCGGGCAACCTATAGGAAGA+CGG 0.605588 8_1:+46456463 Msa1196770:CDS
ATCAAAATAATGGATGAAGT+GGG 0.606623 8_1:+46454999 None:intergenic
ACTCCTCAAGCTCCATCTGT+TGG 0.611272 8_1:+46456126 Msa1196770:CDS
AAACTCCGAGTCCAGCAAGT+GGG 0.613833 8_1:-46456425 None:intergenic
ATTCCGGCAGGTGGAGCCAG+AGG 0.615826 8_1:-46456168 None:intergenic
GGAGCGAAAACTCCAGCACG+TGG 0.621781 8_1:-46456243 None:intergenic
AGCTTGAGGAGCATAAACTC+CGG 0.627574 8_1:-46456337 None:intergenic
ATTGGACAGAAGACGAACAC+AGG 0.628543 8_1:+46455309 Msa1196770:CDS
ATAGGTTGGTCCTCTCTAGG+AGG 0.628624 8_1:-46456264 None:intergenic
GCTGCAACATACATTTCAGT+AGG 0.629219 8_1:-46456363 None:intergenic
TCACCTATGTCGAACCTCAA+GGG 0.630804 8_1:+46456043 Msa1196770:CDS
AACTCCGAGTCCAGCAAGTG+GGG 0.637926 8_1:-46456424 None:intergenic
CCAGGGGTACCAATGAACTT+GGG 0.650736 8_1:+46456573 Msa1196770:CDS
TGCATTGGCCAATAATCCCG+AGG 0.661772 8_1:+46455070 Msa1196770:CDS
TGGGTAGTAGAAGCTATGAG+TGG 0.665232 8_1:+46455018 Msa1196770:CDS
TTCTTGGACAAATATGCCAG+GGG 0.665492 8_1:+46456557 Msa1196770:CDS
TAAACTCCGAGTCCAGCAAG+TGG 0.668326 8_1:-46456426 None:intergenic
TGGAGCTTGAGGAGTTTGTG+TGG 0.688474 8_1:-46456118 None:intergenic
TGATCGATGGGAGAAAATTG+CGG 0.690864 8_1:+46455100 Msa1196770:CDS
GAGCGAAAACTCCAGCACGT+GGG 0.731040 8_1:-46456242 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATAATTTATAATAATT+TGG - chr8_1:46455813-46455832 None:intergenic 0.0%
!! AATAATAATTTATAATAATT+TGG - chr8_1:46455813-46455832 None:intergenic 0.0%
!! TAATGATATGATACTAATTA+AGG + chr8_1:46455426-46455445 Msa1196770:intron 15.0%
!! TAATGATATGATACTAATTA+AGG + chr8_1:46455426-46455445 Msa1196770:intron 15.0%
!! GTTATTATTTACAACTTACA+TGG + chr8_1:46455388-46455407 Msa1196770:intron 20.0%
!! ATACAATAATTCCTTATACA+TGG - chr8_1:46455656-46455675 None:intergenic 20.0%
!!! TATACATCAAATATTTCTAG+AGG + chr8_1:46455695-46455714 Msa1196770:intron 20.0%
!! GTTATTATTTACAACTTACA+TGG + chr8_1:46455388-46455407 Msa1196770:intron 20.0%
!! ATACAATAATTCCTTATACA+TGG - chr8_1:46455656-46455675 None:intergenic 20.0%
!!! TATACATCAAATATTTCTAG+AGG + chr8_1:46455695-46455714 Msa1196770:intron 20.0%
! TAAATTGTTCGAAAATGCAT+TGG + chr8_1:46455055-46455074 Msa1196770:CDS 25.0%
!! TAAACATCACTATGAGATTT+TGG + chr8_1:46455154-46455173 Msa1196770:CDS 25.0%
! TTTGAAAAAGAATCATGATC+TGG - chr8_1:46455221-46455240 None:intergenic 25.0%
! ACTCCTTCAACATAAAAAAA+AGG + chr8_1:46455576-46455595 Msa1196770:intron 25.0%
!!! ATGCCTTTTTTTTATGTTGA+AGG - chr8_1:46455582-46455601 None:intergenic 25.0%
! AGCACTTTATCAATTATGAA+AGG - chr8_1:46455624-46455643 None:intergenic 25.0%
! CTAATTGTAATCCATGTATA+AGG + chr8_1:46455642-46455661 Msa1196770:intron 25.0%
! CACACACATATATATTGATA+CGG - chr8_1:46455752-46455771 None:intergenic 25.0%
!! TATTTTCAAATTTGATGAGC+AGG + chr8_1:46455848-46455867 Msa1196770:intron 25.0%
! AAAAATATCAGAGAACTATG+TGG + chr8_1:46455915-46455934 Msa1196770:CDS 25.0%
! TAAATTGTTCGAAAATGCAT+TGG + chr8_1:46455055-46455074 Msa1196770:CDS 25.0%
!! TAAACATCACTATGAGATTT+TGG + chr8_1:46455154-46455173 Msa1196770:CDS 25.0%
! TTTGAAAAAGAATCATGATC+TGG - chr8_1:46455221-46455240 None:intergenic 25.0%
! ACTCCTTCAACATAAAAAAA+AGG + chr8_1:46455576-46455595 Msa1196770:intron 25.0%
!!! ATGCCTTTTTTTTATGTTGA+AGG - chr8_1:46455582-46455601 None:intergenic 25.0%
! AGCACTTTATCAATTATGAA+AGG - chr8_1:46455624-46455643 None:intergenic 25.0%
! CTAATTGTAATCCATGTATA+AGG + chr8_1:46455642-46455661 Msa1196770:intron 25.0%
! CACACACATATATATTGATA+CGG - chr8_1:46455752-46455771 None:intergenic 25.0%
!! TATTTTCAAATTTGATGAGC+AGG + chr8_1:46455848-46455867 Msa1196770:intron 25.0%
! AAAAATATCAGAGAACTATG+TGG + chr8_1:46455915-46455934 Msa1196770:CDS 25.0%
!!! AATCTCTTCTAAAGTTTTCC+CGG - chr8_1:46455135-46455154 None:intergenic 30.0%
TACTAATTAAGGTGAAGCTT+TGG + chr8_1:46455437-46455456 Msa1196770:intron 30.0%
ACTAATTAAGGTGAAGCTTT+GGG + chr8_1:46455438-46455457 Msa1196770:intron 30.0%
! GTTTCTTGAGTTAGTTTCAA+TGG + chr8_1:46455553-46455572 Msa1196770:intron 30.0%
! AAAAAAAAGGCATGAAGCTT+TGG + chr8_1:46455589-46455608 Msa1196770:intron 30.0%
GTAAAACAAAGCTTAGCATA+TGG - chr8_1:46455791-46455810 None:intergenic 30.0%
!! ATGAGCAGGTTATTTCTTAT+GGG + chr8_1:46455862-46455881 Msa1196770:intron 30.0%
!! AAATTTCTAGTTCCAACAGA+TGG - chr8_1:46456207-46456226 None:intergenic 30.0%
TCTGTTGGAACTAGAAATTT+AGG + chr8_1:46456207-46456226 Msa1196770:CDS 30.0%
TGGATGATCATCTAAATTTC+TGG - chr8_1:46456403-46456422 None:intergenic 30.0%
! TGAGCAAATGTATTTTGCAT+GGG - chr8_1:46456612-46456631 None:intergenic 30.0%
!!! AATCTCTTCTAAAGTTTTCC+CGG - chr8_1:46455135-46455154 None:intergenic 30.0%
TACTAATTAAGGTGAAGCTT+TGG + chr8_1:46455437-46455456 Msa1196770:intron 30.0%
ACTAATTAAGGTGAAGCTTT+GGG + chr8_1:46455438-46455457 Msa1196770:intron 30.0%
! GTTTCTTGAGTTAGTTTCAA+TGG + chr8_1:46455553-46455572 Msa1196770:intron 30.0%
! AAAAAAAAGGCATGAAGCTT+TGG + chr8_1:46455589-46455608 Msa1196770:intron 30.0%
GTAAAACAAAGCTTAGCATA+TGG - chr8_1:46455791-46455810 None:intergenic 30.0%
!! ATGAGCAGGTTATTTCTTAT+GGG + chr8_1:46455862-46455881 Msa1196770:intron 30.0%
!! AAATTTCTAGTTCCAACAGA+TGG - chr8_1:46456207-46456226 None:intergenic 30.0%
TCTGTTGGAACTAGAAATTT+AGG + chr8_1:46456207-46456226 Msa1196770:CDS 30.0%
TGGATGATCATCTAAATTTC+TGG - chr8_1:46456403-46456422 None:intergenic 30.0%
! TGAGCAAATGTATTTTGCAT+GGG - chr8_1:46456612-46456631 None:intergenic 30.0%
!!! ATCTCTTCTAAAGTTTTCCC+GGG - chr8_1:46455134-46455153 None:intergenic 35.0%
GATATCCACAACATTGAATC+TGG + chr8_1:46455182-46455201 Msa1196770:CDS 35.0%
CAAAACCAGATTCAATGTTG+TGG - chr8_1:46455190-46455209 None:intergenic 35.0%
TTCTGTCCAATGATAAGAAC+CGG - chr8_1:46455300-46455319 None:intergenic 35.0%
!! ATTATCTCTGGTGCTACTTT+AGG + chr8_1:46455516-46455535 Msa1196770:intron 35.0%
!! TTATCTCTGGTGCTACTTTA+GGG + chr8_1:46455517-46455536 Msa1196770:intron 35.0%
!! GATGAGCAGGTTATTTCTTA+TGG + chr8_1:46455861-46455880 Msa1196770:intron 35.0%
! AGAAGTATGGAAAGGGTAAA+TGG + chr8_1:46455890-46455909 Msa1196770:CDS 35.0%
CATGCTCAGAAATACTTCAA+AGG + chr8_1:46455967-46455986 Msa1196770:CDS 35.0%
GAATTCAACGAAAGAGAAGA+AGG + chr8_1:46455993-46456012 Msa1196770:CDS 35.0%
ATAGGTGATATCGTGTATTC+TGG - chr8_1:46456031-46456050 None:intergenic 35.0%
! CAGAGGATAATTTGAAGTTC+TGG - chr8_1:46456154-46456173 None:intergenic 35.0%
CAGAACTTCAAATTATCCTC+TGG + chr8_1:46456152-46456171 Msa1196770:CDS 35.0%
!! TCTAAATTTCTGGTTCCAGA+AGG - chr8_1:46456393-46456412 None:intergenic 35.0%
TTTCTTGGACAAATATGCCA+GGG + chr8_1:46456556-46456575 Msa1196770:CDS 35.0%
! TTTTGCATGGGAAATGTCAT+AGG - chr8_1:46456600-46456619 None:intergenic 35.0%
! GTGAGCAAATGTATTTTGCA+TGG - chr8_1:46456613-46456632 None:intergenic 35.0%
!!! ATCTCTTCTAAAGTTTTCCC+GGG - chr8_1:46455134-46455153 None:intergenic 35.0%
GATATCCACAACATTGAATC+TGG + chr8_1:46455182-46455201 Msa1196770:CDS 35.0%
CAAAACCAGATTCAATGTTG+TGG - chr8_1:46455190-46455209 None:intergenic 35.0%
TTCTGTCCAATGATAAGAAC+CGG - chr8_1:46455300-46455319 None:intergenic 35.0%
!! ATTATCTCTGGTGCTACTTT+AGG + chr8_1:46455516-46455535 Msa1196770:intron 35.0%
!! TTATCTCTGGTGCTACTTTA+GGG + chr8_1:46455517-46455536 Msa1196770:intron 35.0%
!! GATGAGCAGGTTATTTCTTA+TGG + chr8_1:46455861-46455880 Msa1196770:intron 35.0%
! AGAAGTATGGAAAGGGTAAA+TGG + chr8_1:46455890-46455909 Msa1196770:CDS 35.0%
CATGCTCAGAAATACTTCAA+AGG + chr8_1:46455967-46455986 Msa1196770:CDS 35.0%
GAATTCAACGAAAGAGAAGA+AGG + chr8_1:46455993-46456012 Msa1196770:CDS 35.0%
ATAGGTGATATCGTGTATTC+TGG - chr8_1:46456031-46456050 None:intergenic 35.0%
! CAGAGGATAATTTGAAGTTC+TGG - chr8_1:46456154-46456173 None:intergenic 35.0%
CAGAACTTCAAATTATCCTC+TGG + chr8_1:46456152-46456171 Msa1196770:CDS 35.0%
!! TCTAAATTTCTGGTTCCAGA+AGG - chr8_1:46456393-46456412 None:intergenic 35.0%
TTTCTTGGACAAATATGCCA+GGG + chr8_1:46456556-46456575 Msa1196770:CDS 35.0%
! TTTTGCATGGGAAATGTCAT+AGG - chr8_1:46456600-46456619 None:intergenic 35.0%
! GTGAGCAAATGTATTTTGCA+TGG - chr8_1:46456613-46456632 None:intergenic 35.0%
TGATCGATGGGAGAAAATTG+CGG + chr8_1:46455100-46455119 Msa1196770:CDS 40.0%
AAAGAATCATGATCTGGCAG+AGG - chr8_1:46455215-46455234 None:intergenic 40.0%
TGAAAGAGGAGCTGTGAAAA+AGG + chr8_1:46455262-46455281 Msa1196770:CDS 40.0%
GAAAGAGGAGCTGTGAAAAA+GGG + chr8_1:46455263-46455282 Msa1196770:CDS 40.0%
AGCTGTGAAAAAGGGAACTA+AGG + chr8_1:46455271-46455290 Msa1196770:CDS 40.0%
AAAAAGGGAACTAAGGCTAC+CGG + chr8_1:46455278-46455297 Msa1196770:CDS 40.0%
TGCTTTGCTTTGCTTTGCTT+TGG + chr8_1:46455344-46455363 Msa1196770:intron 40.0%
CATTAGAGTGTGCTCTATCA+AGG + chr8_1:46455482-46455501 Msa1196770:intron 40.0%
!! TGGTGCTACTTTAGGGTTTA+GGG + chr8_1:46455524-46455543 Msa1196770:intron 40.0%
CGAAAGAGAAGAAGGAAAGT+AGG + chr8_1:46456001-46456020 Msa1196770:CDS 40.0%
TGTAGAATCAATTGCTTGCC+CGG - chr8_1:46456076-46456095 None:intergenic 40.0%
GATTCTACAGCAAATTCTGC+CGG + chr8_1:46456087-46456106 Msa1196770:CDS 40.0%
GATACAACCAGTTCTCCTAT+AGG - chr8_1:46456285-46456304 None:intergenic 40.0%
GCAACATACATTTCAGTAGG+TGG - chr8_1:46456363-46456382 None:intergenic 40.0%
GCTGCAACATACATTTCAGT+AGG - chr8_1:46456366-46456385 None:intergenic 40.0%
!! AAATTTCTGGTTCCAGAAGG+CGG - chr8_1:46456390-46456409 None:intergenic 40.0%
GTTTATGATGTGCCTTGGAT+CGG + chr8_1:46456444-46456463 Msa1196770:CDS 40.0%
TTTATGATGTGCCTTGGATC+GGG + chr8_1:46456445-46456464 Msa1196770:CDS 40.0%
AATACCATAAGCCATGTGTC+CGG - chr8_1:46456529-46456548 None:intergenic 40.0%
! ATGGTATTGGACCAGTTTCT+TGG + chr8_1:46456541-46456560 Msa1196770:CDS 40.0%
GGCATATTTGTCCAAGAAAC+TGG - chr8_1:46456555-46456574 None:intergenic 40.0%
GTTTCTTGGACAAATATGCC+AGG + chr8_1:46456555-46456574 Msa1196770:CDS 40.0%
TTCTTGGACAAATATGCCAG+GGG + chr8_1:46456557-46456576 Msa1196770:CDS 40.0%
TGATCGATGGGAGAAAATTG+CGG + chr8_1:46455100-46455119 Msa1196770:CDS 40.0%
AAAGAATCATGATCTGGCAG+AGG - chr8_1:46455215-46455234 None:intergenic 40.0%
TGAAAGAGGAGCTGTGAAAA+AGG + chr8_1:46455262-46455281 Msa1196770:CDS 40.0%
GAAAGAGGAGCTGTGAAAAA+GGG + chr8_1:46455263-46455282 Msa1196770:CDS 40.0%
AGCTGTGAAAAAGGGAACTA+AGG + chr8_1:46455271-46455290 Msa1196770:CDS 40.0%
AAAAAGGGAACTAAGGCTAC+CGG + chr8_1:46455278-46455297 Msa1196770:CDS 40.0%
TGCTTTGCTTTGCTTTGCTT+TGG + chr8_1:46455344-46455363 Msa1196770:intron 40.0%
CATTAGAGTGTGCTCTATCA+AGG + chr8_1:46455482-46455501 Msa1196770:intron 40.0%
!! TGGTGCTACTTTAGGGTTTA+GGG + chr8_1:46455524-46455543 Msa1196770:intron 40.0%
CGAAAGAGAAGAAGGAAAGT+AGG + chr8_1:46456001-46456020 Msa1196770:CDS 40.0%
TGTAGAATCAATTGCTTGCC+CGG - chr8_1:46456076-46456095 None:intergenic 40.0%
GATTCTACAGCAAATTCTGC+CGG + chr8_1:46456087-46456106 Msa1196770:CDS 40.0%
GATACAACCAGTTCTCCTAT+AGG - chr8_1:46456285-46456304 None:intergenic 40.0%
GCAACATACATTTCAGTAGG+TGG - chr8_1:46456363-46456382 None:intergenic 40.0%
GCTGCAACATACATTTCAGT+AGG - chr8_1:46456366-46456385 None:intergenic 40.0%
!! AAATTTCTGGTTCCAGAAGG+CGG - chr8_1:46456390-46456409 None:intergenic 40.0%
GTTTATGATGTGCCTTGGAT+CGG + chr8_1:46456444-46456463 Msa1196770:CDS 40.0%
TTTATGATGTGCCTTGGATC+GGG + chr8_1:46456445-46456464 Msa1196770:CDS 40.0%
AATACCATAAGCCATGTGTC+CGG - chr8_1:46456529-46456548 None:intergenic 40.0%
! ATGGTATTGGACCAGTTTCT+TGG + chr8_1:46456541-46456560 Msa1196770:CDS 40.0%
GGCATATTTGTCCAAGAAAC+TGG - chr8_1:46456555-46456574 None:intergenic 40.0%
GTTTCTTGGACAAATATGCC+AGG + chr8_1:46456555-46456574 Msa1196770:CDS 40.0%
TTCTTGGACAAATATGCCAG+GGG + chr8_1:46456557-46456576 Msa1196770:CDS 40.0%
TGGGTAGTAGAAGCTATGAG+TGG + chr8_1:46455018-46455037 Msa1196770:CDS 45.0%
AACAGCATCCTCGGGATTAT+TGG - chr8_1:46455081-46455100 None:intergenic 45.0%
!! AGGCTACCGGTTCTTATCAT+TGG + chr8_1:46455291-46455310 Msa1196770:CDS 45.0%
ATTGGACAGAAGACGAACAC+AGG + chr8_1:46455309-46455328 Msa1196770:CDS 45.0%
GTCTCAGACTCGATTATCTC+TGG + chr8_1:46455504-46455523 Msa1196770:intron 45.0%
!! CTGGTGCTACTTTAGGGTTT+AGG + chr8_1:46455523-46455542 Msa1196770:intron 45.0%
CAACCACTAATCCTAGCTAG+CGG - chr8_1:46455728-46455747 None:intergenic 45.0%
!! CAGGTTATTTCTTATGGGCG+TGG + chr8_1:46455867-46455886 Msa1196770:intron 45.0%
ATCACCTATGTCGAACCTCA+AGG + chr8_1:46456042-46456061 Msa1196770:CDS 45.0%
TCACCTATGTCGAACCTCAA+GGG + chr8_1:46456043-46456062 Msa1196770:CDS 45.0%
TCAATTGCTTGCCCGGTAAT+TGG - chr8_1:46456069-46456088 None:intergenic 45.0%
AGCAAATTCTGCCGGACAAA+CGG + chr8_1:46456095-46456114 Msa1196770:CDS 45.0%
! GAAGTTCTGGTACCAACAGA+TGG - chr8_1:46456141-46456160 None:intergenic 45.0%
CAACCAGTTCTCCTATAGGT+TGG - chr8_1:46456281-46456300 None:intergenic 45.0%
GAACTGGTTGTATCCGAAGT+TGG + chr8_1:46456291-46456310 Msa1196770:CDS 45.0%
! AATTCCTGGAGTGCCAACTT+CGG - chr8_1:46456307-46456326 None:intergenic 45.0%
! AGCTTGAGGAGCATAAACTC+CGG - chr8_1:46456340-46456359 None:intergenic 45.0%
ATTTCAGTAGGTGGAGCTTG+AGG - chr8_1:46456354-46456373 None:intergenic 45.0%
!! AATTTCTGGTTCCAGAAGGC+GGG - chr8_1:46456389-46456408 None:intergenic 45.0%
TCGGAGTTTATGATGTGCCT+TGG + chr8_1:46456439-46456458 Msa1196770:CDS 45.0%
GATACAACCCGTCTTCCTAT+AGG - chr8_1:46456474-46456493 None:intergenic 45.0%
!! AGACGGGTTGTATCTGCTTT+CGG + chr8_1:46456480-46456499 Msa1196770:CDS 45.0%
ATACCATAAGCCATGTGTCC+GGG - chr8_1:46456528-46456547 None:intergenic 45.0%
GGACACATGGCTTATGGTAT+TGG + chr8_1:46456528-46456547 Msa1196770:CDS 45.0%
GTCATAGGACCCAAGTTCAT+TGG - chr8_1:46456585-46456604 None:intergenic 45.0%
TGGGTAGTAGAAGCTATGAG+TGG + chr8_1:46455018-46455037 Msa1196770:CDS 45.0%
AACAGCATCCTCGGGATTAT+TGG - chr8_1:46455081-46455100 None:intergenic 45.0%
!! AGGCTACCGGTTCTTATCAT+TGG + chr8_1:46455291-46455310 Msa1196770:CDS 45.0%
ATTGGACAGAAGACGAACAC+AGG + chr8_1:46455309-46455328 Msa1196770:CDS 45.0%
GTCTCAGACTCGATTATCTC+TGG + chr8_1:46455504-46455523 Msa1196770:intron 45.0%
!! CTGGTGCTACTTTAGGGTTT+AGG + chr8_1:46455523-46455542 Msa1196770:intron 45.0%
CAACCACTAATCCTAGCTAG+CGG - chr8_1:46455728-46455747 None:intergenic 45.0%
!! CAGGTTATTTCTTATGGGCG+TGG + chr8_1:46455867-46455886 Msa1196770:intron 45.0%
ATCACCTATGTCGAACCTCA+AGG + chr8_1:46456042-46456061 Msa1196770:CDS 45.0%
TCACCTATGTCGAACCTCAA+GGG + chr8_1:46456043-46456062 Msa1196770:CDS 45.0%
TCAATTGCTTGCCCGGTAAT+TGG - chr8_1:46456069-46456088 None:intergenic 45.0%
AGCAAATTCTGCCGGACAAA+CGG + chr8_1:46456095-46456114 Msa1196770:CDS 45.0%
! GAAGTTCTGGTACCAACAGA+TGG - chr8_1:46456141-46456160 None:intergenic 45.0%
CAACCAGTTCTCCTATAGGT+TGG - chr8_1:46456281-46456300 None:intergenic 45.0%
GAACTGGTTGTATCCGAAGT+TGG + chr8_1:46456291-46456310 Msa1196770:CDS 45.0%
! AATTCCTGGAGTGCCAACTT+CGG - chr8_1:46456307-46456326 None:intergenic 45.0%
! AGCTTGAGGAGCATAAACTC+CGG - chr8_1:46456340-46456359 None:intergenic 45.0%
ATTTCAGTAGGTGGAGCTTG+AGG - chr8_1:46456354-46456373 None:intergenic 45.0%
!! AATTTCTGGTTCCAGAAGGC+GGG - chr8_1:46456389-46456408 None:intergenic 45.0%
TCGGAGTTTATGATGTGCCT+TGG + chr8_1:46456439-46456458 Msa1196770:CDS 45.0%
GATACAACCCGTCTTCCTAT+AGG - chr8_1:46456474-46456493 None:intergenic 45.0%
!! AGACGGGTTGTATCTGCTTT+CGG + chr8_1:46456480-46456499 Msa1196770:CDS 45.0%
ATACCATAAGCCATGTGTCC+GGG - chr8_1:46456528-46456547 None:intergenic 45.0%
GGACACATGGCTTATGGTAT+TGG + chr8_1:46456528-46456547 Msa1196770:CDS 45.0%
GTCATAGGACCCAAGTTCAT+TGG - chr8_1:46456585-46456604 None:intergenic 45.0%
! TGCATTGGCCAATAATCCCG+AGG + chr8_1:46455070-46455089 Msa1196770:CDS 50.0%
CATCGATCAACAGCATCCTC+GGG - chr8_1:46455089-46455108 None:intergenic 50.0%
CCATCGATCAACAGCATCCT+CGG - chr8_1:46455090-46455109 None:intergenic 50.0%
CGAGGATGCTGTTGATCGAT+GGG + chr8_1:46455088-46455107 Msa1196770:CDS 50.0%
AAAATTGCGGCTGATGTGCC+CGG + chr8_1:46455113-46455132 Msa1196770:CDS 50.0%
AAGAGCTCAACAAAGCGTGC+TGG + chr8_1:46455239-46455258 Msa1196770:CDS 50.0%
! ACAAAGCGTGCTGGTGAAAG+AGG + chr8_1:46455248-46455267 Msa1196770:CDS 50.0%
CTTATGGGCGTGGAGAAGTA+TGG + chr8_1:46455877-46455896 Msa1196770:CDS 50.0%
! GGCGTGGAGAAGTATGGAAA+GGG + chr8_1:46455883-46455902 Msa1196770:CDS 50.0%
GAACCTCAAGGGCCAATTAC+CGG + chr8_1:46456054-46456073 Msa1196770:CDS 50.0%
AACCTCAAGGGCCAATTACC+GGG + chr8_1:46456055-46456074 Msa1196770:CDS 50.0%
AGTTTGTGTGGCCGTTTGTC+CGG - chr8_1:46456109-46456128 None:intergenic 50.0%
TGGAGCTTGAGGAGTTTGTG+TGG - chr8_1:46456121-46456140 None:intergenic 50.0%
ACTCCTCAAGCTCCATCTGT+TGG + chr8_1:46456126-46456145 Msa1196770:CDS 50.0%
GTACCAACAGATGGAGCTTG+AGG - chr8_1:46456132-46456151 None:intergenic 50.0%
TGGCGAAGCAGCATACATTC+CGG - chr8_1:46456187-46456206 None:intergenic 50.0%
! TATGCTGCTTCGCCATCTGT+TGG + chr8_1:46456192-46456211 Msa1196770:CDS 50.0%
AAAACTCCAGCACGTGGGAT+TGG - chr8_1:46456240-46456259 None:intergenic 50.0%
! AGTTTTCGCTCCTCCTAGAG+AGG + chr8_1:46456254-46456273 Msa1196770:CDS 50.0%
!! ATAGGTTGGTCCTCTCTAGG+AGG - chr8_1:46456267-46456286 None:intergenic 50.0%
!! CCTATAGGTTGGTCCTCTCT+AGG - chr8_1:46456270-46456289 None:intergenic 50.0%
CCTAGAGAGGACCAACCTAT+AGG + chr8_1:46456267-46456286 Msa1196770:CDS 50.0%
GGACCAACCTATAGGAGAAC+TGG + chr8_1:46456275-46456294 Msa1196770:CDS 50.0%
! GCTTGAGGAGCATAAACTCC+GGG - chr8_1:46456339-46456358 None:intergenic 50.0%
!! ATTTCTGGTTCCAGAAGGCG+GGG - chr8_1:46456388-46456407 None:intergenic 50.0%
AAACTCCGAGTCCAGCAAGT+GGG - chr8_1:46456428-46456447 None:intergenic 50.0%
TAAACTCCGAGTCCAGCAAG+TGG - chr8_1:46456429-46456448 None:intergenic 50.0%
TCGGGCAACCTATAGGAAGA+CGG + chr8_1:46456463-46456482 Msa1196770:CDS 50.0%
!! CCAGGGGTACCAATGAACTT+GGG + chr8_1:46456573-46456592 Msa1196770:CDS 50.0%
! TGCATTGGCCAATAATCCCG+AGG + chr8_1:46455070-46455089 Msa1196770:CDS 50.0%
CATCGATCAACAGCATCCTC+GGG - chr8_1:46455089-46455108 None:intergenic 50.0%
CCATCGATCAACAGCATCCT+CGG - chr8_1:46455090-46455109 None:intergenic 50.0%
CGAGGATGCTGTTGATCGAT+GGG + chr8_1:46455088-46455107 Msa1196770:CDS 50.0%
AAAATTGCGGCTGATGTGCC+CGG + chr8_1:46455113-46455132 Msa1196770:CDS 50.0%
AAGAGCTCAACAAAGCGTGC+TGG + chr8_1:46455239-46455258 Msa1196770:CDS 50.0%
! ACAAAGCGTGCTGGTGAAAG+AGG + chr8_1:46455248-46455267 Msa1196770:CDS 50.0%
CTTATGGGCGTGGAGAAGTA+TGG + chr8_1:46455877-46455896 Msa1196770:CDS 50.0%
! GGCGTGGAGAAGTATGGAAA+GGG + chr8_1:46455883-46455902 Msa1196770:CDS 50.0%
GAACCTCAAGGGCCAATTAC+CGG + chr8_1:46456054-46456073 Msa1196770:CDS 50.0%
AACCTCAAGGGCCAATTACC+GGG + chr8_1:46456055-46456074 Msa1196770:CDS 50.0%
AGTTTGTGTGGCCGTTTGTC+CGG - chr8_1:46456109-46456128 None:intergenic 50.0%
TGGAGCTTGAGGAGTTTGTG+TGG - chr8_1:46456121-46456140 None:intergenic 50.0%
ACTCCTCAAGCTCCATCTGT+TGG + chr8_1:46456126-46456145 Msa1196770:CDS 50.0%
GTACCAACAGATGGAGCTTG+AGG - chr8_1:46456132-46456151 None:intergenic 50.0%
TGGCGAAGCAGCATACATTC+CGG - chr8_1:46456187-46456206 None:intergenic 50.0%
! TATGCTGCTTCGCCATCTGT+TGG + chr8_1:46456192-46456211 Msa1196770:CDS 50.0%
AAAACTCCAGCACGTGGGAT+TGG - chr8_1:46456240-46456259 None:intergenic 50.0%
! AGTTTTCGCTCCTCCTAGAG+AGG + chr8_1:46456254-46456273 Msa1196770:CDS 50.0%
!! ATAGGTTGGTCCTCTCTAGG+AGG - chr8_1:46456267-46456286 None:intergenic 50.0%
!! CCTATAGGTTGGTCCTCTCT+AGG - chr8_1:46456270-46456289 None:intergenic 50.0%
CCTAGAGAGGACCAACCTAT+AGG + chr8_1:46456267-46456286 Msa1196770:CDS 50.0%
GGACCAACCTATAGGAGAAC+TGG + chr8_1:46456275-46456294 Msa1196770:CDS 50.0%
! GCTTGAGGAGCATAAACTCC+GGG - chr8_1:46456339-46456358 None:intergenic 50.0%
!! ATTTCTGGTTCCAGAAGGCG+GGG - chr8_1:46456388-46456407 None:intergenic 50.0%
AAACTCCGAGTCCAGCAAGT+GGG - chr8_1:46456428-46456447 None:intergenic 50.0%
TAAACTCCGAGTCCAGCAAG+TGG - chr8_1:46456429-46456448 None:intergenic 50.0%
TCGGGCAACCTATAGGAAGA+CGG + chr8_1:46456463-46456482 Msa1196770:CDS 50.0%
!! CCAGGGGTACCAATGAACTT+GGG + chr8_1:46456573-46456592 Msa1196770:CDS 50.0%
CCGAGGATGCTGTTGATCGA+TGG + chr8_1:46455087-46455106 Msa1196770:CDS 55.0%
AAATTGCGGCTGATGTGCCC+GGG + chr8_1:46455114-46455133 Msa1196770:CDS 55.0%
GAGGTTATCGTCCGCTAGCT+AGG + chr8_1:46455714-46455733 Msa1196770:intron 55.0%
CGTCCGCTAGCTAGGATTAG+TGG + chr8_1:46455722-46455741 Msa1196770:intron 55.0%
! GGGCGTGGAGAAGTATGGAA+AGG + chr8_1:46455882-46455901 Msa1196770:CDS 55.0%
TGGCCCTTGAGGTTCGACAT+AGG - chr8_1:46456049-46456068 None:intergenic 55.0%
GAAGCAGCATACATTCCGGC+AGG - chr8_1:46456183-46456202 None:intergenic 55.0%
AATCCTCCAATCCCACGTGC+TGG + chr8_1:46456231-46456250 Msa1196770:CDS 55.0%
GAGCGAAAACTCCAGCACGT+GGG - chr8_1:46456245-46456264 None:intergenic 55.0%
GTATCCGAAGTTGGCACTCC+AGG + chr8_1:46456300-46456319 Msa1196770:CDS 55.0%
CCAGGAATTCTGACTGCTCC+CGG + chr8_1:46456318-46456337 Msa1196770:CDS 55.0%
AACTCCGAGTCCAGCAAGTG+GGG - chr8_1:46456427-46456446 None:intergenic 55.0%
CCTATAGGTTGCCCGATCCA+AGG - chr8_1:46456459-46456478 None:intergenic 55.0%
CCTTGGATCGGGCAACCTAT+AGG + chr8_1:46456456-46456475 Msa1196770:CDS 55.0%
CGGGCAACCTATAGGAAGAC+GGG + chr8_1:46456464-46456483 Msa1196770:CDS 55.0%
TATCTGCTTTCGGCGCTGCA+GGG + chr8_1:46456490-46456509 Msa1196770:CDS 55.0%
!! GCCAGGGGTACCAATGAACT+TGG + chr8_1:46456572-46456591 Msa1196770:CDS 55.0%
CCCAAGTTCATTGGTACCCC+TGG - chr8_1:46456576-46456595 None:intergenic 55.0%
CCGAGGATGCTGTTGATCGA+TGG + chr8_1:46455087-46455106 Msa1196770:CDS 55.0%
AAATTGCGGCTGATGTGCCC+GGG + chr8_1:46455114-46455133 Msa1196770:CDS 55.0%
GAGGTTATCGTCCGCTAGCT+AGG + chr8_1:46455714-46455733 Msa1196770:intron 55.0%
CGTCCGCTAGCTAGGATTAG+TGG + chr8_1:46455722-46455741 Msa1196770:intron 55.0%
! GGGCGTGGAGAAGTATGGAA+AGG + chr8_1:46455882-46455901 Msa1196770:CDS 55.0%
TGGCCCTTGAGGTTCGACAT+AGG - chr8_1:46456049-46456068 None:intergenic 55.0%
GAAGCAGCATACATTCCGGC+AGG - chr8_1:46456183-46456202 None:intergenic 55.0%
AATCCTCCAATCCCACGTGC+TGG + chr8_1:46456231-46456250 Msa1196770:CDS 55.0%
GAGCGAAAACTCCAGCACGT+GGG - chr8_1:46456245-46456264 None:intergenic 55.0%
GTATCCGAAGTTGGCACTCC+AGG + chr8_1:46456300-46456319 Msa1196770:CDS 55.0%
CCAGGAATTCTGACTGCTCC+CGG + chr8_1:46456318-46456337 Msa1196770:CDS 55.0%
AACTCCGAGTCCAGCAAGTG+GGG - chr8_1:46456427-46456446 None:intergenic 55.0%
CCTATAGGTTGCCCGATCCA+AGG - chr8_1:46456459-46456478 None:intergenic 55.0%
CCTTGGATCGGGCAACCTAT+AGG + chr8_1:46456456-46456475 Msa1196770:CDS 55.0%
CGGGCAACCTATAGGAAGAC+GGG + chr8_1:46456464-46456483 Msa1196770:CDS 55.0%
TATCTGCTTTCGGCGCTGCA+GGG + chr8_1:46456490-46456509 Msa1196770:CDS 55.0%
!! GCCAGGGGTACCAATGAACT+TGG + chr8_1:46456572-46456591 Msa1196770:CDS 55.0%
CCCAAGTTCATTGGTACCCC+TGG - chr8_1:46456576-46456595 None:intergenic 55.0%
TGCCCGGTAATTGGCCCTTG+AGG - chr8_1:46456060-46456079 None:intergenic 60.0%
! TATCCTCTGGCTCCACCTGC+CGG + chr8_1:46456165-46456184 Msa1196770:CDS 60.0%
GCAGCATACATTCCGGCAGG+TGG - chr8_1:46456180-46456199 None:intergenic 60.0%
ACTCCAGCACGTGGGATTGG+AGG - chr8_1:46456237-46456256 None:intergenic 60.0%
GGAGCGAAAACTCCAGCACG+TGG - chr8_1:46456246-46456265 None:intergenic 60.0%
CCGGGAGCAGTCAGAATTCC+TGG - chr8_1:46456321-46456340 None:intergenic 60.0%
TATGTTGCAGCCCCGCCTTC+TGG + chr8_1:46456375-46456394 Msa1196770:CDS 60.0%
GATCATCCAGCCCCACTTGC+TGG + chr8_1:46456414-46456433 Msa1196770:CDS 60.0%
GTATCTGCTTTCGGCGCTGC+AGG + chr8_1:46456489-46456508 Msa1196770:CDS 60.0%
GCAGGGTTTCCTTCTGCTCC+CGG + chr8_1:46456507-46456526 Msa1196770:CDS 60.0%
TCCTTCTGCTCCCGGACACA+TGG + chr8_1:46456515-46456534 Msa1196770:CDS 60.0%
GCTCCCGGACACATGGCTTA+TGG + chr8_1:46456522-46456541 Msa1196770:CDS 60.0%
TGCCCGGTAATTGGCCCTTG+AGG - chr8_1:46456060-46456079 None:intergenic 60.0%
! TATCCTCTGGCTCCACCTGC+CGG + chr8_1:46456165-46456184 Msa1196770:CDS 60.0%
GCAGCATACATTCCGGCAGG+TGG - chr8_1:46456180-46456199 None:intergenic 60.0%
ACTCCAGCACGTGGGATTGG+AGG - chr8_1:46456237-46456256 None:intergenic 60.0%
GGAGCGAAAACTCCAGCACG+TGG - chr8_1:46456246-46456265 None:intergenic 60.0%
CCGGGAGCAGTCAGAATTCC+TGG - chr8_1:46456321-46456340 None:intergenic 60.0%
TATGTTGCAGCCCCGCCTTC+TGG + chr8_1:46456375-46456394 Msa1196770:CDS 60.0%
GATCATCCAGCCCCACTTGC+TGG + chr8_1:46456414-46456433 Msa1196770:CDS 60.0%
GTATCTGCTTTCGGCGCTGC+AGG + chr8_1:46456489-46456508 Msa1196770:CDS 60.0%
GCAGGGTTTCCTTCTGCTCC+CGG + chr8_1:46456507-46456526 Msa1196770:CDS 60.0%
TCCTTCTGCTCCCGGACACA+TGG + chr8_1:46456515-46456534 Msa1196770:CDS 60.0%
GCTCCCGGACACATGGCTTA+TGG + chr8_1:46456522-46456541 Msa1196770:CDS 60.0%
ATTCCGGCAGGTGGAGCCAG+AGG - chr8_1:46456171-46456190 None:intergenic 65.0%
! CCAGCCCCACTTGCTGGACT+CGG + chr8_1:46456420-46456439 Msa1196770:CDS 65.0%
GCCATGTGTCCGGGAGCAGA+AGG - chr8_1:46456519-46456538 None:intergenic 65.0%
ATTCCGGCAGGTGGAGCCAG+AGG - chr8_1:46456171-46456190 None:intergenic 65.0%
! CCAGCCCCACTTGCTGGACT+CGG + chr8_1:46456420-46456439 Msa1196770:CDS 65.0%
GCCATGTGTCCGGGAGCAGA+AGG - chr8_1:46456519-46456538 None:intergenic 65.0%
CCGAGTCCAGCAAGTGGGGC+TGG - chr8_1:46456423-46456442 None:intergenic 70.0%
CCGAGTCCAGCAAGTGGGGC+TGG - chr8_1:46456423-46456442 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 46455008 46456635 46455008 ID=Msa1196770;Name=Msa1196770
chr8_1 mRNA 46455008 46456635 46455008 ID=Msa1196770-mRNA-1;Parent=Msa1196770;Name=Msa1196770-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|362
chr8_1 exon 46455008 46455330 46455008 ID=Msa1196770-mRNA-1:exon:14789;Parent=Msa1196770-mRNA-1
chr8_1 exon 46455870 46456635 46455870 ID=Msa1196770-mRNA-1:exon:14790;Parent=Msa1196770-mRNA-1
chr8_1 CDS 46455008 46455330 46455008 ID=Msa1196770-mRNA-1:cds;Parent=Msa1196770-mRNA-1
chr8_1 CDS 46455870 46456635 46455870 ID=Msa1196770-mRNA-1:cds;Parent=Msa1196770-mRNA-1
Gene Sequence

>Msa1196770

ATGGATGAAGTGGGTAGTAGAAGCTATGAGTGGAGCAGCGAGCAAAATAAATTGTTCGAAAATGCATTGGCCAATAATCCCGAGGATGCTGTTGATCGATGGGAGAAAATTGCGGCTGATGTGCCCGGGAAAACTTTAGAAGAGATTAAACATCACTATGAGATTTTGGTGTATGATATCCACAACATTGAATCTGGTTTTGTGCCTCTGCCAGATCATGATTCTTTTTCAAAGAGCTCAACAAAGCGTGCTGGTGAAAGAGGAGCTGTGAAAAAGGGAACTAAGGCTACCGGTTCTTATCATTGGACAGAAGACGAACACAGGTTATTTCTTATGGGCGTGGAGAAGTATGGAAAGGGTAAATGGCGAAAAATATCAGAGAACTATGTGGTGACAAGAACACATACACAAGTAGCAAGTCATGCTCAGAAATACTTCAAAGGTCTGAATTCAACGAAAGAGAAGAAGGAAAGTAGGCGATCCAGAATACACGATATCACCTATGTCGAACCTCAAGGGCCAATTACCGGGCAAGCAATTGATTCTACAGCAAATTCTGCCGGACAAACGGCCACACAAACTCCTCAAGCTCCATCTGTTGGTACCAGAACTTCAAATTATCCTCTGGCTCCACCTGCCGGAATGTATGCTGCTTCGCCATCTGTTGGAACTAGAAATTTAGGTAATCCTCCAATCCCACGTGCTGGAGTTTTCGCTCCTCCTAGAGAGGACCAACCTATAGGAGAACTGGTTGTATCCGAAGTTGGCACTCCAGGAATTCTGACTGCTCCCGGAGTTTATGCTCCTCAAGCTCCACCTACTGAAATGTATGTTGCAGCCCCGCCTTCTGGAACCAGAAATTTAGATGATCATCCAGCCCCACTTGCTGGACTCGGAGTTTATGATGTGCCTTGGATCGGGCAACCTATAGGAAGACGGGTTGTATCTGCTTTCGGCGCTGCAGGGTTTCCTTCTGCTCCCGGACACATGGCTTATGGTATTGGACCAGTTTCTTGGACAAATATGCCAGGGGTACCAATGAACTTGGGTCCTATGACATTTCCCATGCAAAATACATTTGCTCACTAA

Protein sequence

>Msa1196770

MDEVGSRSYEWSSEQNKLFENALANNPEDAVDRWEKIAADVPGKTLEEIKHHYEILVYDIHNIESGFVPLPDHDSFSKSSTKRAGERGAVKKGTKATGSYHWTEDEHRLFLMGVEKYGKGKWRKISENYVVTRTHTQVASHAQKYFKGLNSTKEKKESRRSRIHDITYVEPQGPITGQAIDSTANSAGQTATQTPQAPSVGTRTSNYPLAPPAGMYAASPSVGTRNLGNPPIPRAGVFAPPREDQPIGELVVSEVGTPGILTAPGVYAPQAPPTEMYVAAPPSGTRNLDDHPAPLAGLGVYDVPWIGQPIGRRVVSAFGAAGFPSAPGHMAYGIGPVSWTNMPGVPMNLGPMTFPMQNTFAH*