Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1196770 | XP_013445934.1 | 58.424 | 368 | 51 | 8 | 1 | 362 | 1 | 272 | 2.37e-128 | 379 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1196770 | sp|Q9FNN6|SRM1_ARATH | 47.925 | 265 | 98 | 10 | 11 | 241 | 12 | 270 | 1.32e-57 | 192 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1196770 | A0A072TS07 | 58.424 | 368 | 51 | 8 | 1 | 362 | 1 | 272 | 1.13e-128 | 379 |
Gene ID | Type | Classification |
---|---|---|
Msa1196770 | TF | MYB |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1196770 | MtrunA17_Chr8g0365011 | 56.579 | 380 | 51 | 9 | 1 | 362 | 1 | 284 | 6.45e-129 | 370 |
Msa1196770 | MtrunA17_Chr1g0162081 | 49.834 | 301 | 85 | 10 | 1 | 269 | 3 | 269 | 3.10e-74 | 232 |
Msa1196770 | MtrunA17_Chr8g0364741 | 70.312 | 128 | 26 | 3 | 1 | 117 | 1 | 127 | 1.18e-51 | 168 |
Msa1196770 | MtrunA17_Chr1g0210471 | 51.124 | 178 | 62 | 3 | 10 | 170 | 23 | 192 | 2.70e-46 | 158 |
Msa1196770 | MtrunA17_Chr4g0062741 | 36.697 | 327 | 110 | 14 | 11 | 274 | 8 | 300 | 3.63e-45 | 157 |
Msa1196770 | MtrunA17_Chr5g0436501 | 40.724 | 221 | 114 | 4 | 10 | 219 | 26 | 240 | 7.64e-42 | 147 |
Msa1196770 | MtrunA17_Chr3g0104071 | 46.703 | 182 | 74 | 5 | 6 | 169 | 38 | 214 | 1.41e-41 | 148 |
Msa1196770 | MtrunA17_Chr5g0429521 | 43.229 | 192 | 91 | 5 | 11 | 187 | 29 | 217 | 1.67e-41 | 147 |
Msa1196770 | MtrunA17_Chr8g0364731 | 52.761 | 163 | 49 | 2 | 109 | 265 | 10 | 150 | 2.40e-40 | 140 |
Msa1196770 | MtrunA17_Chr8g0364731 | 54.082 | 98 | 37 | 2 | 265 | 362 | 95 | 184 | 9.44e-22 | 91.3 |
Msa1196770 | MtrunA17_Chr7g0241761 | 46.111 | 180 | 77 | 5 | 10 | 172 | 34 | 210 | 2.99e-39 | 141 |
Msa1196770 | MtrunA17_Chr5g0432921 | 43.558 | 163 | 85 | 6 | 7 | 164 | 17 | 177 | 1.27e-29 | 113 |
Msa1196770 | MtrunA17_Chr5g0432941 | 41.358 | 162 | 89 | 5 | 7 | 164 | 18 | 177 | 2.48e-28 | 110 |
Msa1196770 | MtrunA17_Chr5g0440731 | 59.155 | 71 | 28 | 1 | 99 | 168 | 104 | 174 | 4.40e-22 | 94.7 |
Msa1196770 | MtrunA17_Chr5g0440741 | 43.966 | 116 | 48 | 3 | 101 | 215 | 101 | 200 | 1.11e-21 | 93.6 |
Msa1196770 | MtrunA17_Chr5g0409841 | 45.263 | 95 | 51 | 1 | 101 | 195 | 93 | 186 | 1.03e-20 | 89.7 |
Msa1196770 | MtrunA17_Chr4g0055931 | 35.000 | 180 | 68 | 7 | 71 | 213 | 68 | 235 | 1.01e-19 | 89.0 |
Msa1196770 | MtrunA17_Chr6g0488471 | 64.615 | 65 | 21 | 1 | 102 | 166 | 99 | 161 | 3.42e-19 | 86.7 |
Msa1196770 | MtrunA17_Chr1g0155181 | 55.882 | 68 | 30 | 0 | 6 | 73 | 2 | 69 | 6.62e-19 | 80.5 |
Msa1196770 | MtrunA17_Chr2g0331031 | 46.535 | 101 | 49 | 3 | 67 | 166 | 77 | 173 | 7.95e-19 | 86.7 |
Msa1196770 | MtrunA17_Chr8g0389241 | 60.000 | 65 | 23 | 1 | 102 | 166 | 107 | 168 | 1.56e-18 | 84.7 |
Msa1196770 | MtrunA17_Chr3g0144631 | 52.308 | 65 | 31 | 0 | 11 | 75 | 16 | 80 | 2.03e-17 | 76.3 |
Msa1196770 | MtrunA17_Chr3g0141601 | 54.545 | 66 | 30 | 0 | 8 | 73 | 4 | 69 | 2.80e-17 | 76.3 |
Msa1196770 | MtrunA17_Chr4g0059701 | 75.556 | 45 | 11 | 0 | 102 | 146 | 86 | 130 | 1.18e-16 | 79.3 |
Msa1196770 | MtrunA17_Chr1g0192061 | 45.192 | 104 | 50 | 4 | 63 | 162 | 22 | 122 | 1.24e-16 | 77.4 |
Msa1196770 | MtrunA17_Chr3g0092621 | 48.780 | 82 | 35 | 2 | 102 | 178 | 86 | 165 | 1.76e-16 | 76.6 |
Msa1196770 | MtrunA17_Chr5g0415191 | 59.091 | 66 | 25 | 1 | 102 | 167 | 104 | 167 | 2.08e-16 | 79.0 |
Msa1196770 | MtrunA17_Chr5g0404101 | 59.375 | 64 | 26 | 0 | 8 | 71 | 16 | 79 | 2.12e-16 | 73.9 |
Msa1196770 | MtrunA17_Chr5g0409831 | 50.633 | 79 | 36 | 2 | 91 | 168 | 70 | 146 | 2.49e-15 | 74.7 |
Msa1196770 | MtrunA17_Chr3g0135671 | 42.697 | 89 | 48 | 2 | 102 | 188 | 93 | 180 | 7.89e-15 | 73.2 |
Msa1196770 | MtrunA17_Chr6g0449111 | 50.725 | 69 | 34 | 0 | 5 | 73 | 4 | 72 | 1.26e-14 | 68.6 |
Msa1196770 | MtrunA17_Chr6g0452791 | 68.889 | 45 | 14 | 0 | 102 | 146 | 82 | 126 | 3.30e-14 | 70.1 |
Msa1196770 | MtrunA17_Chr7g0255841 | 50.000 | 70 | 35 | 0 | 14 | 83 | 15 | 84 | 9.95e-14 | 66.2 |
Msa1196770 | MtrunA17_Chr8g0373131 | 42.857 | 70 | 39 | 1 | 11 | 80 | 5 | 73 | 7.71e-13 | 63.2 |
Msa1196770 | MtrunA17_Chr8g0373111 | 43.478 | 69 | 38 | 1 | 11 | 79 | 5 | 72 | 8.21e-13 | 63.2 |
Msa1196770 | MtrunA17_Chr8g0373121 | 43.478 | 69 | 38 | 1 | 11 | 79 | 5 | 72 | 8.21e-13 | 63.2 |
Msa1196770 | MtrunA17_Chr3g0113121 | 45.570 | 79 | 38 | 1 | 101 | 174 | 96 | 174 | 1.74e-12 | 66.2 |
Msa1196770 | MtrunA17_Chr5g0404301 | 50.820 | 61 | 29 | 1 | 11 | 71 | 4 | 63 | 3.28e-12 | 61.2 |
Msa1196770 | MtrunA17_Chr8g0370131 | 34.234 | 111 | 51 | 2 | 102 | 207 | 105 | 198 | 7.93e-12 | 64.3 |
Msa1196770 | MtrunA17_Chr3g0081631 | 47.826 | 69 | 35 | 1 | 6 | 73 | 5 | 73 | 1.09e-11 | 60.5 |
Msa1196770 | MtrunA17_Chr3g0141641 | 48.387 | 62 | 30 | 2 | 11 | 71 | 3 | 63 | 3.93e-11 | 58.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1196770 | AT5G08520.1 | 47.925 | 265 | 98 | 10 | 11 | 241 | 12 | 270 | 1.35e-58 | 192 |
Msa1196770 | AT5G23650.1 | 34.759 | 374 | 156 | 13 | 11 | 349 | 13 | 333 | 7.12e-44 | 155 |
Msa1196770 | AT5G04760.1 | 43.939 | 198 | 101 | 4 | 8 | 200 | 3 | 195 | 1.20e-42 | 148 |
Msa1196770 | AT2G38090.1 | 44.681 | 188 | 77 | 5 | 6 | 169 | 24 | 208 | 4.35e-41 | 146 |
Msa1196770 | AT1G49010.1 | 42.439 | 205 | 78 | 5 | 11 | 177 | 8 | 210 | 1.70e-40 | 145 |
Msa1196770 | AT5G58900.1 | 42.373 | 177 | 82 | 3 | 11 | 169 | 34 | 208 | 8.82e-39 | 140 |
Msa1196770 | AT3G11280.2 | 42.473 | 186 | 84 | 6 | 11 | 187 | 33 | 204 | 3.49e-38 | 137 |
Msa1196770 | AT3G11280.1 | 42.473 | 186 | 84 | 6 | 11 | 187 | 33 | 204 | 3.49e-38 | 137 |
Msa1196770 | AT5G05790.2 | 43.094 | 181 | 76 | 4 | 7 | 169 | 27 | 198 | 9.68e-37 | 134 |
Msa1196770 | AT5G05790.1 | 43.094 | 181 | 76 | 4 | 7 | 169 | 27 | 198 | 9.68e-37 | 134 |
Msa1196770 | AT5G01200.1 | 40.526 | 190 | 84 | 5 | 7 | 169 | 26 | 213 | 2.40e-34 | 127 |
Msa1196770 | AT4G09450.1 | 41.875 | 160 | 82 | 5 | 10 | 167 | 6 | 156 | 8.30e-26 | 103 |
Msa1196770 | AT3G10580.2 | 37.949 | 195 | 98 | 7 | 11 | 198 | 8 | 186 | 4.36e-24 | 100 |
Msa1196770 | AT3G10580.1 | 37.949 | 195 | 98 | 7 | 11 | 198 | 8 | 186 | 7.23e-24 | 100 |
Msa1196770 | AT1G75250.2 | 52.857 | 70 | 33 | 0 | 11 | 80 | 12 | 81 | 1.13e-18 | 80.5 |
Msa1196770 | AT3G10590.1 | 35.556 | 180 | 94 | 7 | 11 | 173 | 7 | 181 | 2.25e-18 | 83.2 |
Msa1196770 | AT1G75250.1 | 52.857 | 70 | 33 | 0 | 11 | 80 | 12 | 81 | 3.47e-18 | 80.1 |
Msa1196770 | AT5G47390.1 | 56.579 | 76 | 25 | 2 | 91 | 166 | 93 | 160 | 3.81e-18 | 85.1 |
Msa1196770 | AT4G39250.1 | 52.381 | 63 | 30 | 0 | 11 | 73 | 14 | 76 | 2.38e-17 | 77.0 |
Msa1196770 | AT3G16350.1 | 52.273 | 88 | 30 | 3 | 59 | 146 | 108 | 183 | 2.81e-17 | 82.8 |
Msa1196770 | AT5G61620.1 | 57.576 | 66 | 26 | 1 | 102 | 167 | 110 | 173 | 6.03e-17 | 81.3 |
Msa1196770 | AT1G70000.1 | 63.636 | 66 | 22 | 1 | 102 | 167 | 100 | 163 | 1.84e-16 | 79.0 |
Msa1196770 | AT1G70000.2 | 63.636 | 66 | 22 | 1 | 102 | 167 | 100 | 163 | 1.84e-16 | 79.0 |
Msa1196770 | AT5G56840.1 | 56.923 | 65 | 27 | 1 | 102 | 166 | 93 | 156 | 2.46e-16 | 77.8 |
Msa1196770 | AT1G74840.2 | 68.889 | 45 | 14 | 0 | 102 | 146 | 98 | 142 | 5.11e-16 | 77.0 |
Msa1196770 | AT1G74840.1 | 68.889 | 45 | 14 | 0 | 102 | 146 | 98 | 142 | 6.23e-16 | 77.4 |
Msa1196770 | AT1G19510.1 | 46.479 | 71 | 38 | 0 | 14 | 84 | 15 | 85 | 1.17e-15 | 72.4 |
Msa1196770 | AT2G21650.1 | 47.222 | 72 | 38 | 0 | 11 | 82 | 14 | 85 | 4.42e-15 | 70.9 |
Msa1196770 | AT1G19000.2 | 66.667 | 45 | 15 | 0 | 102 | 146 | 104 | 148 | 1.57e-14 | 73.6 |
Msa1196770 | AT1G19000.1 | 66.667 | 45 | 15 | 0 | 102 | 146 | 104 | 148 | 1.57e-14 | 73.6 |
Msa1196770 | AT2G18328.1 | 52.632 | 57 | 27 | 0 | 15 | 71 | 15 | 71 | 3.79e-13 | 64.7 |
Msa1196770 | AT3G10585.1 | 34.503 | 171 | 71 | 7 | 11 | 173 | 7 | 144 | 1.62e-11 | 62.8 |
Msa1196770 | AT3G10595.1 | 24.590 | 183 | 122 | 5 | 11 | 193 | 6 | 172 | 2.85e-11 | 62.4 |
Find 118 sgRNAs with CRISPR-Local
Find 308 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAAACATCACTATGAGATTT+TGG | 0.187100 | 8_1:+46455154 | Msa1196770:CDS |
TGGATGATCATCTAAATTTC+TGG | 0.206174 | 8_1:-46456400 | None:intergenic |
GATGAGCAGGTTATTTCTTA+TGG | 0.229350 | 8_1:+46455861 | Msa1196770:intron |
TCAATTGCTTGCCCGGTAAT+TGG | 0.238961 | 8_1:-46456066 | None:intergenic |
AACAGCATCCTCGGGATTAT+TGG | 0.247617 | 8_1:-46455078 | None:intergenic |
TATGTTGCAGCCCCGCCTTC+TGG | 0.274061 | 8_1:+46456375 | Msa1196770:CDS |
GTATCTGCTTTCGGCGCTGC+AGG | 0.317922 | 8_1:+46456489 | Msa1196770:CDS |
CAGAGGATAATTTGAAGTTC+TGG | 0.320137 | 8_1:-46456151 | None:intergenic |
TCTGTTGGAACTAGAAATTT+AGG | 0.321437 | 8_1:+46456207 | Msa1196770:CDS |
ATGGTATTGGACCAGTTTCT+TGG | 0.328363 | 8_1:+46456541 | Msa1196770:CDS |
TGAAAGAGGAGCTGTGAAAA+AGG | 0.334187 | 8_1:+46455262 | Msa1196770:CDS |
CCGGGAGCAGTCAGAATTCC+TGG | 0.337631 | 8_1:-46456318 | None:intergenic |
GATCATCCAGCCCCACTTGC+TGG | 0.353540 | 8_1:+46456414 | Msa1196770:CDS |
ATGAGCAGGTTATTTCTTAT+GGG | 0.354456 | 8_1:+46455862 | Msa1196770:intron |
GGCATATTTGTCCAAGAAAC+TGG | 0.357689 | 8_1:-46456552 | None:intergenic |
GATATCCACAACATTGAATC+TGG | 0.364726 | 8_1:+46455182 | Msa1196770:CDS |
AGGCTACCGGTTCTTATCAT+TGG | 0.374780 | 8_1:+46455291 | Msa1196770:CDS |
CTTATGGGCGTGGAGAAGTA+TGG | 0.382631 | 8_1:+46455877 | Msa1196770:CDS |
GCTCCCGGACACATGGCTTA+TGG | 0.384505 | 8_1:+46456522 | Msa1196770:CDS |
GGACACATGGCTTATGGTAT+TGG | 0.393934 | 8_1:+46456528 | Msa1196770:CDS |
GAACCTCAAGGGCCAATTAC+CGG | 0.396923 | 8_1:+46456054 | Msa1196770:CDS |
AGACGGGTTGTATCTGCTTT+CGG | 0.398815 | 8_1:+46456480 | Msa1196770:CDS |
GCAGGGTTTCCTTCTGCTCC+CGG | 0.401027 | 8_1:+46456507 | Msa1196770:CDS |
GATACAACCAGTTCTCCTAT+AGG | 0.413028 | 8_1:-46456282 | None:intergenic |
CCAGCCCCACTTGCTGGACT+CGG | 0.416423 | 8_1:+46456420 | Msa1196770:CDS |
AGCAAATTCTGCCGGACAAA+CGG | 0.424545 | 8_1:+46456095 | Msa1196770:CDS |
ATAGGTGATATCGTGTATTC+TGG | 0.431284 | 8_1:-46456028 | None:intergenic |
AGAAGTATGGAAAGGGTAAA+TGG | 0.436340 | 8_1:+46455890 | Msa1196770:CDS |
CCTTGGATCGGGCAACCTAT+AGG | 0.440600 | 8_1:+46456456 | Msa1196770:CDS |
GCCAGGGGTACCAATGAACT+TGG | 0.443338 | 8_1:+46456572 | Msa1196770:CDS |
AAAACTCCAGCACGTGGGAT+TGG | 0.444600 | 8_1:-46456237 | None:intergenic |
CCTAGAGAGGACCAACCTAT+AGG | 0.444649 | 8_1:+46456267 | Msa1196770:CDS |
GTTTATGATGTGCCTTGGAT+CGG | 0.445975 | 8_1:+46456444 | Msa1196770:CDS |
CCGAGTCCAGCAAGTGGGGC+TGG | 0.451356 | 8_1:-46456420 | None:intergenic |
AGTTTGTGTGGCCGTTTGTC+CGG | 0.453502 | 8_1:-46456106 | None:intergenic |
GATACAACCCGTCTTCCTAT+AGG | 0.454270 | 8_1:-46456471 | None:intergenic |
TTCTGTCCAATGATAAGAAC+CGG | 0.457832 | 8_1:-46455297 | None:intergenic |
CCATCGATCAACAGCATCCT+CGG | 0.458092 | 8_1:-46455087 | None:intergenic |
TCCTTCTGCTCCCGGACACA+TGG | 0.459304 | 8_1:+46456515 | Msa1196770:CDS |
AATTTCTGGTTCCAGAAGGC+GGG | 0.459732 | 8_1:-46456386 | None:intergenic |
CCTATAGGTTGGTCCTCTCT+AGG | 0.460076 | 8_1:-46456267 | None:intergenic |
AAAATTGCGGCTGATGTGCC+CGG | 0.461117 | 8_1:+46455113 | Msa1196770:CDS |
TTTATGATGTGCCTTGGATC+GGG | 0.462141 | 8_1:+46456445 | Msa1196770:CDS |
GGACCAACCTATAGGAGAAC+TGG | 0.467312 | 8_1:+46456275 | Msa1196770:CDS |
GTCATAGGACCCAAGTTCAT+TGG | 0.473573 | 8_1:-46456582 | None:intergenic |
CCCAAGTTCATTGGTACCCC+TGG | 0.474063 | 8_1:-46456573 | None:intergenic |
CGAAAGAGAAGAAGGAAAGT+AGG | 0.474467 | 8_1:+46456001 | Msa1196770:CDS |
TGTAGAATCAATTGCTTGCC+CGG | 0.476569 | 8_1:-46456073 | None:intergenic |
TCGGAGTTTATGATGTGCCT+TGG | 0.477536 | 8_1:+46456439 | Msa1196770:CDS |
TATCCTCTGGCTCCACCTGC+CGG | 0.481371 | 8_1:+46456165 | Msa1196770:CDS |
TATCTGCTTTCGGCGCTGCA+GGG | 0.484566 | 8_1:+46456490 | Msa1196770:CDS |
GTATCCGAAGTTGGCACTCC+AGG | 0.488034 | 8_1:+46456300 | Msa1196770:CDS |
CCAGGAATTCTGACTGCTCC+CGG | 0.491706 | 8_1:+46456318 | Msa1196770:CDS |
CAGGTTATTTCTTATGGGCG+TGG | 0.501373 | 8_1:+46455867 | Msa1196770:intron |
TAAATTGTTCGAAAATGCAT+TGG | 0.506339 | 8_1:+46455055 | Msa1196770:CDS |
ACTCCAGCACGTGGGATTGG+AGG | 0.509106 | 8_1:-46456234 | None:intergenic |
ACAAAGCGTGCTGGTGAAAG+AGG | 0.509612 | 8_1:+46455248 | Msa1196770:CDS |
AACCTCAAGGGCCAATTACC+GGG | 0.512811 | 8_1:+46456055 | Msa1196770:CDS |
AATCAAAATAATGGATGAAG+TGG | 0.514101 | 8_1:+46454998 | None:intergenic |
CAGAACTTCAAATTATCCTC+TGG | 0.519752 | 8_1:+46456152 | Msa1196770:CDS |
AATACCATAAGCCATGTGTC+CGG | 0.520964 | 8_1:-46456526 | None:intergenic |
CGAGGATGCTGTTGATCGAT+GGG | 0.525087 | 8_1:+46455088 | Msa1196770:CDS |
CCGAGGATGCTGTTGATCGA+TGG | 0.527921 | 8_1:+46455087 | Msa1196770:CDS |
GGCGTGGAGAAGTATGGAAA+GGG | 0.531559 | 8_1:+46455883 | Msa1196770:CDS |
TGGCGAAGCAGCATACATTC+CGG | 0.533982 | 8_1:-46456184 | None:intergenic |
GCCATGTGTCCGGGAGCAGA+AGG | 0.540860 | 8_1:-46456516 | None:intergenic |
GTTTCTTGGACAAATATGCC+AGG | 0.542042 | 8_1:+46456555 | Msa1196770:CDS |
CATCGATCAACAGCATCCTC+GGG | 0.542757 | 8_1:-46455086 | None:intergenic |
AATCCTCCAATCCCACGTGC+TGG | 0.542954 | 8_1:+46456231 | Msa1196770:CDS |
GCTTGAGGAGCATAAACTCC+GGG | 0.545991 | 8_1:-46456336 | None:intergenic |
GAATTCAACGAAAGAGAAGA+AGG | 0.547173 | 8_1:+46455993 | Msa1196770:CDS |
GAAGTTCTGGTACCAACAGA+TGG | 0.547709 | 8_1:-46456138 | None:intergenic |
GAACTGGTTGTATCCGAAGT+TGG | 0.550235 | 8_1:+46456291 | Msa1196770:CDS |
CATGCTCAGAAATACTTCAA+AGG | 0.551854 | 8_1:+46455967 | Msa1196770:CDS |
ATACCATAAGCCATGTGTCC+GGG | 0.552377 | 8_1:-46456525 | None:intergenic |
GATTCTACAGCAAATTCTGC+CGG | 0.557661 | 8_1:+46456087 | Msa1196770:CDS |
TATGCTGCTTCGCCATCTGT+TGG | 0.563547 | 8_1:+46456192 | Msa1196770:CDS |
CCTATAGGTTGCCCGATCCA+AGG | 0.564457 | 8_1:-46456456 | None:intergenic |
CAAAACCAGATTCAATGTTG+TGG | 0.566485 | 8_1:-46455187 | None:intergenic |
GAAGCAGCATACATTCCGGC+AGG | 0.568137 | 8_1:-46456180 | None:intergenic |
AAATTTCTGGTTCCAGAAGG+CGG | 0.568201 | 8_1:-46456387 | None:intergenic |
ATTTCAGTAGGTGGAGCTTG+AGG | 0.570653 | 8_1:-46456351 | None:intergenic |
AAGAGCTCAACAAAGCGTGC+TGG | 0.576719 | 8_1:+46455239 | Msa1196770:CDS |
AAATTTCTAGTTCCAACAGA+TGG | 0.578638 | 8_1:-46456204 | None:intergenic |
TGGCCCTTGAGGTTCGACAT+AGG | 0.580396 | 8_1:-46456046 | None:intergenic |
ATCACCTATGTCGAACCTCA+AGG | 0.586168 | 8_1:+46456042 | Msa1196770:CDS |
ATTTCTGGTTCCAGAAGGCG+GGG | 0.586635 | 8_1:-46456385 | None:intergenic |
AATTCCTGGAGTGCCAACTT+CGG | 0.593276 | 8_1:-46456304 | None:intergenic |
TTTCTTGGACAAATATGCCA+GGG | 0.593394 | 8_1:+46456556 | Msa1196770:CDS |
GCAGCATACATTCCGGCAGG+TGG | 0.596107 | 8_1:-46456177 | None:intergenic |
GTACCAACAGATGGAGCTTG+AGG | 0.598203 | 8_1:-46456129 | None:intergenic |
AAATTGCGGCTGATGTGCCC+GGG | 0.599032 | 8_1:+46455114 | Msa1196770:CDS |
CAACCAGTTCTCCTATAGGT+TGG | 0.599335 | 8_1:-46456278 | None:intergenic |
TGCCCGGTAATTGGCCCTTG+AGG | 0.600641 | 8_1:-46456057 | None:intergenic |
GCAACATACATTTCAGTAGG+TGG | 0.602800 | 8_1:-46456360 | None:intergenic |
AAAGAATCATGATCTGGCAG+AGG | 0.603467 | 8_1:-46455212 | None:intergenic |
TCTAAATTTCTGGTTCCAGA+AGG | 0.603646 | 8_1:-46456390 | None:intergenic |
GGGCGTGGAGAAGTATGGAA+AGG | 0.603697 | 8_1:+46455882 | Msa1196770:CDS |
TCGGGCAACCTATAGGAAGA+CGG | 0.605588 | 8_1:+46456463 | Msa1196770:CDS |
ATCAAAATAATGGATGAAGT+GGG | 0.606623 | 8_1:+46454999 | None:intergenic |
ACTCCTCAAGCTCCATCTGT+TGG | 0.611272 | 8_1:+46456126 | Msa1196770:CDS |
AAACTCCGAGTCCAGCAAGT+GGG | 0.613833 | 8_1:-46456425 | None:intergenic |
ATTCCGGCAGGTGGAGCCAG+AGG | 0.615826 | 8_1:-46456168 | None:intergenic |
GGAGCGAAAACTCCAGCACG+TGG | 0.621781 | 8_1:-46456243 | None:intergenic |
AGCTTGAGGAGCATAAACTC+CGG | 0.627574 | 8_1:-46456337 | None:intergenic |
ATTGGACAGAAGACGAACAC+AGG | 0.628543 | 8_1:+46455309 | Msa1196770:CDS |
ATAGGTTGGTCCTCTCTAGG+AGG | 0.628624 | 8_1:-46456264 | None:intergenic |
GCTGCAACATACATTTCAGT+AGG | 0.629219 | 8_1:-46456363 | None:intergenic |
TCACCTATGTCGAACCTCAA+GGG | 0.630804 | 8_1:+46456043 | Msa1196770:CDS |
AACTCCGAGTCCAGCAAGTG+GGG | 0.637926 | 8_1:-46456424 | None:intergenic |
CCAGGGGTACCAATGAACTT+GGG | 0.650736 | 8_1:+46456573 | Msa1196770:CDS |
TGCATTGGCCAATAATCCCG+AGG | 0.661772 | 8_1:+46455070 | Msa1196770:CDS |
TGGGTAGTAGAAGCTATGAG+TGG | 0.665232 | 8_1:+46455018 | Msa1196770:CDS |
TTCTTGGACAAATATGCCAG+GGG | 0.665492 | 8_1:+46456557 | Msa1196770:CDS |
TAAACTCCGAGTCCAGCAAG+TGG | 0.668326 | 8_1:-46456426 | None:intergenic |
TGGAGCTTGAGGAGTTTGTG+TGG | 0.688474 | 8_1:-46456118 | None:intergenic |
TGATCGATGGGAGAAAATTG+CGG | 0.690864 | 8_1:+46455100 | Msa1196770:CDS |
GAGCGAAAACTCCAGCACGT+GGG | 0.731040 | 8_1:-46456242 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATAATAATTTATAATAATT+TGG | - | chr8_1:46455813-46455832 | None:intergenic | 0.0% |
!! | AATAATAATTTATAATAATT+TGG | - | chr8_1:46455813-46455832 | None:intergenic | 0.0% |
!! | TAATGATATGATACTAATTA+AGG | + | chr8_1:46455426-46455445 | Msa1196770:intron | 15.0% |
!! | TAATGATATGATACTAATTA+AGG | + | chr8_1:46455426-46455445 | Msa1196770:intron | 15.0% |
!! | GTTATTATTTACAACTTACA+TGG | + | chr8_1:46455388-46455407 | Msa1196770:intron | 20.0% |
!! | ATACAATAATTCCTTATACA+TGG | - | chr8_1:46455656-46455675 | None:intergenic | 20.0% |
!!! | TATACATCAAATATTTCTAG+AGG | + | chr8_1:46455695-46455714 | Msa1196770:intron | 20.0% |
!! | GTTATTATTTACAACTTACA+TGG | + | chr8_1:46455388-46455407 | Msa1196770:intron | 20.0% |
!! | ATACAATAATTCCTTATACA+TGG | - | chr8_1:46455656-46455675 | None:intergenic | 20.0% |
!!! | TATACATCAAATATTTCTAG+AGG | + | chr8_1:46455695-46455714 | Msa1196770:intron | 20.0% |
! | TAAATTGTTCGAAAATGCAT+TGG | + | chr8_1:46455055-46455074 | Msa1196770:CDS | 25.0% |
!! | TAAACATCACTATGAGATTT+TGG | + | chr8_1:46455154-46455173 | Msa1196770:CDS | 25.0% |
! | TTTGAAAAAGAATCATGATC+TGG | - | chr8_1:46455221-46455240 | None:intergenic | 25.0% |
! | ACTCCTTCAACATAAAAAAA+AGG | + | chr8_1:46455576-46455595 | Msa1196770:intron | 25.0% |
!!! | ATGCCTTTTTTTTATGTTGA+AGG | - | chr8_1:46455582-46455601 | None:intergenic | 25.0% |
! | AGCACTTTATCAATTATGAA+AGG | - | chr8_1:46455624-46455643 | None:intergenic | 25.0% |
! | CTAATTGTAATCCATGTATA+AGG | + | chr8_1:46455642-46455661 | Msa1196770:intron | 25.0% |
! | CACACACATATATATTGATA+CGG | - | chr8_1:46455752-46455771 | None:intergenic | 25.0% |
!! | TATTTTCAAATTTGATGAGC+AGG | + | chr8_1:46455848-46455867 | Msa1196770:intron | 25.0% |
! | AAAAATATCAGAGAACTATG+TGG | + | chr8_1:46455915-46455934 | Msa1196770:CDS | 25.0% |
! | TAAATTGTTCGAAAATGCAT+TGG | + | chr8_1:46455055-46455074 | Msa1196770:CDS | 25.0% |
!! | TAAACATCACTATGAGATTT+TGG | + | chr8_1:46455154-46455173 | Msa1196770:CDS | 25.0% |
! | TTTGAAAAAGAATCATGATC+TGG | - | chr8_1:46455221-46455240 | None:intergenic | 25.0% |
! | ACTCCTTCAACATAAAAAAA+AGG | + | chr8_1:46455576-46455595 | Msa1196770:intron | 25.0% |
!!! | ATGCCTTTTTTTTATGTTGA+AGG | - | chr8_1:46455582-46455601 | None:intergenic | 25.0% |
! | AGCACTTTATCAATTATGAA+AGG | - | chr8_1:46455624-46455643 | None:intergenic | 25.0% |
! | CTAATTGTAATCCATGTATA+AGG | + | chr8_1:46455642-46455661 | Msa1196770:intron | 25.0% |
! | CACACACATATATATTGATA+CGG | - | chr8_1:46455752-46455771 | None:intergenic | 25.0% |
!! | TATTTTCAAATTTGATGAGC+AGG | + | chr8_1:46455848-46455867 | Msa1196770:intron | 25.0% |
! | AAAAATATCAGAGAACTATG+TGG | + | chr8_1:46455915-46455934 | Msa1196770:CDS | 25.0% |
!!! | AATCTCTTCTAAAGTTTTCC+CGG | - | chr8_1:46455135-46455154 | None:intergenic | 30.0% |
TACTAATTAAGGTGAAGCTT+TGG | + | chr8_1:46455437-46455456 | Msa1196770:intron | 30.0% | |
ACTAATTAAGGTGAAGCTTT+GGG | + | chr8_1:46455438-46455457 | Msa1196770:intron | 30.0% | |
! | GTTTCTTGAGTTAGTTTCAA+TGG | + | chr8_1:46455553-46455572 | Msa1196770:intron | 30.0% |
! | AAAAAAAAGGCATGAAGCTT+TGG | + | chr8_1:46455589-46455608 | Msa1196770:intron | 30.0% |
GTAAAACAAAGCTTAGCATA+TGG | - | chr8_1:46455791-46455810 | None:intergenic | 30.0% | |
!! | ATGAGCAGGTTATTTCTTAT+GGG | + | chr8_1:46455862-46455881 | Msa1196770:intron | 30.0% |
!! | AAATTTCTAGTTCCAACAGA+TGG | - | chr8_1:46456207-46456226 | None:intergenic | 30.0% |
TCTGTTGGAACTAGAAATTT+AGG | + | chr8_1:46456207-46456226 | Msa1196770:CDS | 30.0% | |
TGGATGATCATCTAAATTTC+TGG | - | chr8_1:46456403-46456422 | None:intergenic | 30.0% | |
! | TGAGCAAATGTATTTTGCAT+GGG | - | chr8_1:46456612-46456631 | None:intergenic | 30.0% |
!!! | AATCTCTTCTAAAGTTTTCC+CGG | - | chr8_1:46455135-46455154 | None:intergenic | 30.0% |
TACTAATTAAGGTGAAGCTT+TGG | + | chr8_1:46455437-46455456 | Msa1196770:intron | 30.0% | |
ACTAATTAAGGTGAAGCTTT+GGG | + | chr8_1:46455438-46455457 | Msa1196770:intron | 30.0% | |
! | GTTTCTTGAGTTAGTTTCAA+TGG | + | chr8_1:46455553-46455572 | Msa1196770:intron | 30.0% |
! | AAAAAAAAGGCATGAAGCTT+TGG | + | chr8_1:46455589-46455608 | Msa1196770:intron | 30.0% |
GTAAAACAAAGCTTAGCATA+TGG | - | chr8_1:46455791-46455810 | None:intergenic | 30.0% | |
!! | ATGAGCAGGTTATTTCTTAT+GGG | + | chr8_1:46455862-46455881 | Msa1196770:intron | 30.0% |
!! | AAATTTCTAGTTCCAACAGA+TGG | - | chr8_1:46456207-46456226 | None:intergenic | 30.0% |
TCTGTTGGAACTAGAAATTT+AGG | + | chr8_1:46456207-46456226 | Msa1196770:CDS | 30.0% | |
TGGATGATCATCTAAATTTC+TGG | - | chr8_1:46456403-46456422 | None:intergenic | 30.0% | |
! | TGAGCAAATGTATTTTGCAT+GGG | - | chr8_1:46456612-46456631 | None:intergenic | 30.0% |
!!! | ATCTCTTCTAAAGTTTTCCC+GGG | - | chr8_1:46455134-46455153 | None:intergenic | 35.0% |
GATATCCACAACATTGAATC+TGG | + | chr8_1:46455182-46455201 | Msa1196770:CDS | 35.0% | |
CAAAACCAGATTCAATGTTG+TGG | - | chr8_1:46455190-46455209 | None:intergenic | 35.0% | |
TTCTGTCCAATGATAAGAAC+CGG | - | chr8_1:46455300-46455319 | None:intergenic | 35.0% | |
!! | ATTATCTCTGGTGCTACTTT+AGG | + | chr8_1:46455516-46455535 | Msa1196770:intron | 35.0% |
!! | TTATCTCTGGTGCTACTTTA+GGG | + | chr8_1:46455517-46455536 | Msa1196770:intron | 35.0% |
!! | GATGAGCAGGTTATTTCTTA+TGG | + | chr8_1:46455861-46455880 | Msa1196770:intron | 35.0% |
! | AGAAGTATGGAAAGGGTAAA+TGG | + | chr8_1:46455890-46455909 | Msa1196770:CDS | 35.0% |
CATGCTCAGAAATACTTCAA+AGG | + | chr8_1:46455967-46455986 | Msa1196770:CDS | 35.0% | |
GAATTCAACGAAAGAGAAGA+AGG | + | chr8_1:46455993-46456012 | Msa1196770:CDS | 35.0% | |
ATAGGTGATATCGTGTATTC+TGG | - | chr8_1:46456031-46456050 | None:intergenic | 35.0% | |
! | CAGAGGATAATTTGAAGTTC+TGG | - | chr8_1:46456154-46456173 | None:intergenic | 35.0% |
CAGAACTTCAAATTATCCTC+TGG | + | chr8_1:46456152-46456171 | Msa1196770:CDS | 35.0% | |
!! | TCTAAATTTCTGGTTCCAGA+AGG | - | chr8_1:46456393-46456412 | None:intergenic | 35.0% |
TTTCTTGGACAAATATGCCA+GGG | + | chr8_1:46456556-46456575 | Msa1196770:CDS | 35.0% | |
! | TTTTGCATGGGAAATGTCAT+AGG | - | chr8_1:46456600-46456619 | None:intergenic | 35.0% |
! | GTGAGCAAATGTATTTTGCA+TGG | - | chr8_1:46456613-46456632 | None:intergenic | 35.0% |
!!! | ATCTCTTCTAAAGTTTTCCC+GGG | - | chr8_1:46455134-46455153 | None:intergenic | 35.0% |
GATATCCACAACATTGAATC+TGG | + | chr8_1:46455182-46455201 | Msa1196770:CDS | 35.0% | |
CAAAACCAGATTCAATGTTG+TGG | - | chr8_1:46455190-46455209 | None:intergenic | 35.0% | |
TTCTGTCCAATGATAAGAAC+CGG | - | chr8_1:46455300-46455319 | None:intergenic | 35.0% | |
!! | ATTATCTCTGGTGCTACTTT+AGG | + | chr8_1:46455516-46455535 | Msa1196770:intron | 35.0% |
!! | TTATCTCTGGTGCTACTTTA+GGG | + | chr8_1:46455517-46455536 | Msa1196770:intron | 35.0% |
!! | GATGAGCAGGTTATTTCTTA+TGG | + | chr8_1:46455861-46455880 | Msa1196770:intron | 35.0% |
! | AGAAGTATGGAAAGGGTAAA+TGG | + | chr8_1:46455890-46455909 | Msa1196770:CDS | 35.0% |
CATGCTCAGAAATACTTCAA+AGG | + | chr8_1:46455967-46455986 | Msa1196770:CDS | 35.0% | |
GAATTCAACGAAAGAGAAGA+AGG | + | chr8_1:46455993-46456012 | Msa1196770:CDS | 35.0% | |
ATAGGTGATATCGTGTATTC+TGG | - | chr8_1:46456031-46456050 | None:intergenic | 35.0% | |
! | CAGAGGATAATTTGAAGTTC+TGG | - | chr8_1:46456154-46456173 | None:intergenic | 35.0% |
CAGAACTTCAAATTATCCTC+TGG | + | chr8_1:46456152-46456171 | Msa1196770:CDS | 35.0% | |
!! | TCTAAATTTCTGGTTCCAGA+AGG | - | chr8_1:46456393-46456412 | None:intergenic | 35.0% |
TTTCTTGGACAAATATGCCA+GGG | + | chr8_1:46456556-46456575 | Msa1196770:CDS | 35.0% | |
! | TTTTGCATGGGAAATGTCAT+AGG | - | chr8_1:46456600-46456619 | None:intergenic | 35.0% |
! | GTGAGCAAATGTATTTTGCA+TGG | - | chr8_1:46456613-46456632 | None:intergenic | 35.0% |
TGATCGATGGGAGAAAATTG+CGG | + | chr8_1:46455100-46455119 | Msa1196770:CDS | 40.0% | |
AAAGAATCATGATCTGGCAG+AGG | - | chr8_1:46455215-46455234 | None:intergenic | 40.0% | |
TGAAAGAGGAGCTGTGAAAA+AGG | + | chr8_1:46455262-46455281 | Msa1196770:CDS | 40.0% | |
GAAAGAGGAGCTGTGAAAAA+GGG | + | chr8_1:46455263-46455282 | Msa1196770:CDS | 40.0% | |
AGCTGTGAAAAAGGGAACTA+AGG | + | chr8_1:46455271-46455290 | Msa1196770:CDS | 40.0% | |
AAAAAGGGAACTAAGGCTAC+CGG | + | chr8_1:46455278-46455297 | Msa1196770:CDS | 40.0% | |
TGCTTTGCTTTGCTTTGCTT+TGG | + | chr8_1:46455344-46455363 | Msa1196770:intron | 40.0% | |
CATTAGAGTGTGCTCTATCA+AGG | + | chr8_1:46455482-46455501 | Msa1196770:intron | 40.0% | |
!! | TGGTGCTACTTTAGGGTTTA+GGG | + | chr8_1:46455524-46455543 | Msa1196770:intron | 40.0% |
CGAAAGAGAAGAAGGAAAGT+AGG | + | chr8_1:46456001-46456020 | Msa1196770:CDS | 40.0% | |
TGTAGAATCAATTGCTTGCC+CGG | - | chr8_1:46456076-46456095 | None:intergenic | 40.0% | |
GATTCTACAGCAAATTCTGC+CGG | + | chr8_1:46456087-46456106 | Msa1196770:CDS | 40.0% | |
GATACAACCAGTTCTCCTAT+AGG | - | chr8_1:46456285-46456304 | None:intergenic | 40.0% | |
GCAACATACATTTCAGTAGG+TGG | - | chr8_1:46456363-46456382 | None:intergenic | 40.0% | |
GCTGCAACATACATTTCAGT+AGG | - | chr8_1:46456366-46456385 | None:intergenic | 40.0% | |
!! | AAATTTCTGGTTCCAGAAGG+CGG | - | chr8_1:46456390-46456409 | None:intergenic | 40.0% |
GTTTATGATGTGCCTTGGAT+CGG | + | chr8_1:46456444-46456463 | Msa1196770:CDS | 40.0% | |
TTTATGATGTGCCTTGGATC+GGG | + | chr8_1:46456445-46456464 | Msa1196770:CDS | 40.0% | |
AATACCATAAGCCATGTGTC+CGG | - | chr8_1:46456529-46456548 | None:intergenic | 40.0% | |
! | ATGGTATTGGACCAGTTTCT+TGG | + | chr8_1:46456541-46456560 | Msa1196770:CDS | 40.0% |
GGCATATTTGTCCAAGAAAC+TGG | - | chr8_1:46456555-46456574 | None:intergenic | 40.0% | |
GTTTCTTGGACAAATATGCC+AGG | + | chr8_1:46456555-46456574 | Msa1196770:CDS | 40.0% | |
TTCTTGGACAAATATGCCAG+GGG | + | chr8_1:46456557-46456576 | Msa1196770:CDS | 40.0% | |
TGATCGATGGGAGAAAATTG+CGG | + | chr8_1:46455100-46455119 | Msa1196770:CDS | 40.0% | |
AAAGAATCATGATCTGGCAG+AGG | - | chr8_1:46455215-46455234 | None:intergenic | 40.0% | |
TGAAAGAGGAGCTGTGAAAA+AGG | + | chr8_1:46455262-46455281 | Msa1196770:CDS | 40.0% | |
GAAAGAGGAGCTGTGAAAAA+GGG | + | chr8_1:46455263-46455282 | Msa1196770:CDS | 40.0% | |
AGCTGTGAAAAAGGGAACTA+AGG | + | chr8_1:46455271-46455290 | Msa1196770:CDS | 40.0% | |
AAAAAGGGAACTAAGGCTAC+CGG | + | chr8_1:46455278-46455297 | Msa1196770:CDS | 40.0% | |
TGCTTTGCTTTGCTTTGCTT+TGG | + | chr8_1:46455344-46455363 | Msa1196770:intron | 40.0% | |
CATTAGAGTGTGCTCTATCA+AGG | + | chr8_1:46455482-46455501 | Msa1196770:intron | 40.0% | |
!! | TGGTGCTACTTTAGGGTTTA+GGG | + | chr8_1:46455524-46455543 | Msa1196770:intron | 40.0% |
CGAAAGAGAAGAAGGAAAGT+AGG | + | chr8_1:46456001-46456020 | Msa1196770:CDS | 40.0% | |
TGTAGAATCAATTGCTTGCC+CGG | - | chr8_1:46456076-46456095 | None:intergenic | 40.0% | |
GATTCTACAGCAAATTCTGC+CGG | + | chr8_1:46456087-46456106 | Msa1196770:CDS | 40.0% | |
GATACAACCAGTTCTCCTAT+AGG | - | chr8_1:46456285-46456304 | None:intergenic | 40.0% | |
GCAACATACATTTCAGTAGG+TGG | - | chr8_1:46456363-46456382 | None:intergenic | 40.0% | |
GCTGCAACATACATTTCAGT+AGG | - | chr8_1:46456366-46456385 | None:intergenic | 40.0% | |
!! | AAATTTCTGGTTCCAGAAGG+CGG | - | chr8_1:46456390-46456409 | None:intergenic | 40.0% |
GTTTATGATGTGCCTTGGAT+CGG | + | chr8_1:46456444-46456463 | Msa1196770:CDS | 40.0% | |
TTTATGATGTGCCTTGGATC+GGG | + | chr8_1:46456445-46456464 | Msa1196770:CDS | 40.0% | |
AATACCATAAGCCATGTGTC+CGG | - | chr8_1:46456529-46456548 | None:intergenic | 40.0% | |
! | ATGGTATTGGACCAGTTTCT+TGG | + | chr8_1:46456541-46456560 | Msa1196770:CDS | 40.0% |
GGCATATTTGTCCAAGAAAC+TGG | - | chr8_1:46456555-46456574 | None:intergenic | 40.0% | |
GTTTCTTGGACAAATATGCC+AGG | + | chr8_1:46456555-46456574 | Msa1196770:CDS | 40.0% | |
TTCTTGGACAAATATGCCAG+GGG | + | chr8_1:46456557-46456576 | Msa1196770:CDS | 40.0% | |
TGGGTAGTAGAAGCTATGAG+TGG | + | chr8_1:46455018-46455037 | Msa1196770:CDS | 45.0% | |
AACAGCATCCTCGGGATTAT+TGG | - | chr8_1:46455081-46455100 | None:intergenic | 45.0% | |
!! | AGGCTACCGGTTCTTATCAT+TGG | + | chr8_1:46455291-46455310 | Msa1196770:CDS | 45.0% |
ATTGGACAGAAGACGAACAC+AGG | + | chr8_1:46455309-46455328 | Msa1196770:CDS | 45.0% | |
GTCTCAGACTCGATTATCTC+TGG | + | chr8_1:46455504-46455523 | Msa1196770:intron | 45.0% | |
!! | CTGGTGCTACTTTAGGGTTT+AGG | + | chr8_1:46455523-46455542 | Msa1196770:intron | 45.0% |
CAACCACTAATCCTAGCTAG+CGG | - | chr8_1:46455728-46455747 | None:intergenic | 45.0% | |
!! | CAGGTTATTTCTTATGGGCG+TGG | + | chr8_1:46455867-46455886 | Msa1196770:intron | 45.0% |
ATCACCTATGTCGAACCTCA+AGG | + | chr8_1:46456042-46456061 | Msa1196770:CDS | 45.0% | |
TCACCTATGTCGAACCTCAA+GGG | + | chr8_1:46456043-46456062 | Msa1196770:CDS | 45.0% | |
TCAATTGCTTGCCCGGTAAT+TGG | - | chr8_1:46456069-46456088 | None:intergenic | 45.0% | |
AGCAAATTCTGCCGGACAAA+CGG | + | chr8_1:46456095-46456114 | Msa1196770:CDS | 45.0% | |
! | GAAGTTCTGGTACCAACAGA+TGG | - | chr8_1:46456141-46456160 | None:intergenic | 45.0% |
CAACCAGTTCTCCTATAGGT+TGG | - | chr8_1:46456281-46456300 | None:intergenic | 45.0% | |
GAACTGGTTGTATCCGAAGT+TGG | + | chr8_1:46456291-46456310 | Msa1196770:CDS | 45.0% | |
! | AATTCCTGGAGTGCCAACTT+CGG | - | chr8_1:46456307-46456326 | None:intergenic | 45.0% |
! | AGCTTGAGGAGCATAAACTC+CGG | - | chr8_1:46456340-46456359 | None:intergenic | 45.0% |
ATTTCAGTAGGTGGAGCTTG+AGG | - | chr8_1:46456354-46456373 | None:intergenic | 45.0% | |
!! | AATTTCTGGTTCCAGAAGGC+GGG | - | chr8_1:46456389-46456408 | None:intergenic | 45.0% |
TCGGAGTTTATGATGTGCCT+TGG | + | chr8_1:46456439-46456458 | Msa1196770:CDS | 45.0% | |
GATACAACCCGTCTTCCTAT+AGG | - | chr8_1:46456474-46456493 | None:intergenic | 45.0% | |
!! | AGACGGGTTGTATCTGCTTT+CGG | + | chr8_1:46456480-46456499 | Msa1196770:CDS | 45.0% |
ATACCATAAGCCATGTGTCC+GGG | - | chr8_1:46456528-46456547 | None:intergenic | 45.0% | |
GGACACATGGCTTATGGTAT+TGG | + | chr8_1:46456528-46456547 | Msa1196770:CDS | 45.0% | |
GTCATAGGACCCAAGTTCAT+TGG | - | chr8_1:46456585-46456604 | None:intergenic | 45.0% | |
TGGGTAGTAGAAGCTATGAG+TGG | + | chr8_1:46455018-46455037 | Msa1196770:CDS | 45.0% | |
AACAGCATCCTCGGGATTAT+TGG | - | chr8_1:46455081-46455100 | None:intergenic | 45.0% | |
!! | AGGCTACCGGTTCTTATCAT+TGG | + | chr8_1:46455291-46455310 | Msa1196770:CDS | 45.0% |
ATTGGACAGAAGACGAACAC+AGG | + | chr8_1:46455309-46455328 | Msa1196770:CDS | 45.0% | |
GTCTCAGACTCGATTATCTC+TGG | + | chr8_1:46455504-46455523 | Msa1196770:intron | 45.0% | |
!! | CTGGTGCTACTTTAGGGTTT+AGG | + | chr8_1:46455523-46455542 | Msa1196770:intron | 45.0% |
CAACCACTAATCCTAGCTAG+CGG | - | chr8_1:46455728-46455747 | None:intergenic | 45.0% | |
!! | CAGGTTATTTCTTATGGGCG+TGG | + | chr8_1:46455867-46455886 | Msa1196770:intron | 45.0% |
ATCACCTATGTCGAACCTCA+AGG | + | chr8_1:46456042-46456061 | Msa1196770:CDS | 45.0% | |
TCACCTATGTCGAACCTCAA+GGG | + | chr8_1:46456043-46456062 | Msa1196770:CDS | 45.0% | |
TCAATTGCTTGCCCGGTAAT+TGG | - | chr8_1:46456069-46456088 | None:intergenic | 45.0% | |
AGCAAATTCTGCCGGACAAA+CGG | + | chr8_1:46456095-46456114 | Msa1196770:CDS | 45.0% | |
! | GAAGTTCTGGTACCAACAGA+TGG | - | chr8_1:46456141-46456160 | None:intergenic | 45.0% |
CAACCAGTTCTCCTATAGGT+TGG | - | chr8_1:46456281-46456300 | None:intergenic | 45.0% | |
GAACTGGTTGTATCCGAAGT+TGG | + | chr8_1:46456291-46456310 | Msa1196770:CDS | 45.0% | |
! | AATTCCTGGAGTGCCAACTT+CGG | - | chr8_1:46456307-46456326 | None:intergenic | 45.0% |
! | AGCTTGAGGAGCATAAACTC+CGG | - | chr8_1:46456340-46456359 | None:intergenic | 45.0% |
ATTTCAGTAGGTGGAGCTTG+AGG | - | chr8_1:46456354-46456373 | None:intergenic | 45.0% | |
!! | AATTTCTGGTTCCAGAAGGC+GGG | - | chr8_1:46456389-46456408 | None:intergenic | 45.0% |
TCGGAGTTTATGATGTGCCT+TGG | + | chr8_1:46456439-46456458 | Msa1196770:CDS | 45.0% | |
GATACAACCCGTCTTCCTAT+AGG | - | chr8_1:46456474-46456493 | None:intergenic | 45.0% | |
!! | AGACGGGTTGTATCTGCTTT+CGG | + | chr8_1:46456480-46456499 | Msa1196770:CDS | 45.0% |
ATACCATAAGCCATGTGTCC+GGG | - | chr8_1:46456528-46456547 | None:intergenic | 45.0% | |
GGACACATGGCTTATGGTAT+TGG | + | chr8_1:46456528-46456547 | Msa1196770:CDS | 45.0% | |
GTCATAGGACCCAAGTTCAT+TGG | - | chr8_1:46456585-46456604 | None:intergenic | 45.0% | |
! | TGCATTGGCCAATAATCCCG+AGG | + | chr8_1:46455070-46455089 | Msa1196770:CDS | 50.0% |
CATCGATCAACAGCATCCTC+GGG | - | chr8_1:46455089-46455108 | None:intergenic | 50.0% | |
CCATCGATCAACAGCATCCT+CGG | - | chr8_1:46455090-46455109 | None:intergenic | 50.0% | |
CGAGGATGCTGTTGATCGAT+GGG | + | chr8_1:46455088-46455107 | Msa1196770:CDS | 50.0% | |
AAAATTGCGGCTGATGTGCC+CGG | + | chr8_1:46455113-46455132 | Msa1196770:CDS | 50.0% | |
AAGAGCTCAACAAAGCGTGC+TGG | + | chr8_1:46455239-46455258 | Msa1196770:CDS | 50.0% | |
! | ACAAAGCGTGCTGGTGAAAG+AGG | + | chr8_1:46455248-46455267 | Msa1196770:CDS | 50.0% |
CTTATGGGCGTGGAGAAGTA+TGG | + | chr8_1:46455877-46455896 | Msa1196770:CDS | 50.0% | |
! | GGCGTGGAGAAGTATGGAAA+GGG | + | chr8_1:46455883-46455902 | Msa1196770:CDS | 50.0% |
GAACCTCAAGGGCCAATTAC+CGG | + | chr8_1:46456054-46456073 | Msa1196770:CDS | 50.0% | |
AACCTCAAGGGCCAATTACC+GGG | + | chr8_1:46456055-46456074 | Msa1196770:CDS | 50.0% | |
AGTTTGTGTGGCCGTTTGTC+CGG | - | chr8_1:46456109-46456128 | None:intergenic | 50.0% | |
TGGAGCTTGAGGAGTTTGTG+TGG | - | chr8_1:46456121-46456140 | None:intergenic | 50.0% | |
ACTCCTCAAGCTCCATCTGT+TGG | + | chr8_1:46456126-46456145 | Msa1196770:CDS | 50.0% | |
GTACCAACAGATGGAGCTTG+AGG | - | chr8_1:46456132-46456151 | None:intergenic | 50.0% | |
TGGCGAAGCAGCATACATTC+CGG | - | chr8_1:46456187-46456206 | None:intergenic | 50.0% | |
! | TATGCTGCTTCGCCATCTGT+TGG | + | chr8_1:46456192-46456211 | Msa1196770:CDS | 50.0% |
AAAACTCCAGCACGTGGGAT+TGG | - | chr8_1:46456240-46456259 | None:intergenic | 50.0% | |
! | AGTTTTCGCTCCTCCTAGAG+AGG | + | chr8_1:46456254-46456273 | Msa1196770:CDS | 50.0% |
!! | ATAGGTTGGTCCTCTCTAGG+AGG | - | chr8_1:46456267-46456286 | None:intergenic | 50.0% |
!! | CCTATAGGTTGGTCCTCTCT+AGG | - | chr8_1:46456270-46456289 | None:intergenic | 50.0% |
CCTAGAGAGGACCAACCTAT+AGG | + | chr8_1:46456267-46456286 | Msa1196770:CDS | 50.0% | |
GGACCAACCTATAGGAGAAC+TGG | + | chr8_1:46456275-46456294 | Msa1196770:CDS | 50.0% | |
! | GCTTGAGGAGCATAAACTCC+GGG | - | chr8_1:46456339-46456358 | None:intergenic | 50.0% |
!! | ATTTCTGGTTCCAGAAGGCG+GGG | - | chr8_1:46456388-46456407 | None:intergenic | 50.0% |
AAACTCCGAGTCCAGCAAGT+GGG | - | chr8_1:46456428-46456447 | None:intergenic | 50.0% | |
TAAACTCCGAGTCCAGCAAG+TGG | - | chr8_1:46456429-46456448 | None:intergenic | 50.0% | |
TCGGGCAACCTATAGGAAGA+CGG | + | chr8_1:46456463-46456482 | Msa1196770:CDS | 50.0% | |
!! | CCAGGGGTACCAATGAACTT+GGG | + | chr8_1:46456573-46456592 | Msa1196770:CDS | 50.0% |
! | TGCATTGGCCAATAATCCCG+AGG | + | chr8_1:46455070-46455089 | Msa1196770:CDS | 50.0% |
CATCGATCAACAGCATCCTC+GGG | - | chr8_1:46455089-46455108 | None:intergenic | 50.0% | |
CCATCGATCAACAGCATCCT+CGG | - | chr8_1:46455090-46455109 | None:intergenic | 50.0% | |
CGAGGATGCTGTTGATCGAT+GGG | + | chr8_1:46455088-46455107 | Msa1196770:CDS | 50.0% | |
AAAATTGCGGCTGATGTGCC+CGG | + | chr8_1:46455113-46455132 | Msa1196770:CDS | 50.0% | |
AAGAGCTCAACAAAGCGTGC+TGG | + | chr8_1:46455239-46455258 | Msa1196770:CDS | 50.0% | |
! | ACAAAGCGTGCTGGTGAAAG+AGG | + | chr8_1:46455248-46455267 | Msa1196770:CDS | 50.0% |
CTTATGGGCGTGGAGAAGTA+TGG | + | chr8_1:46455877-46455896 | Msa1196770:CDS | 50.0% | |
! | GGCGTGGAGAAGTATGGAAA+GGG | + | chr8_1:46455883-46455902 | Msa1196770:CDS | 50.0% |
GAACCTCAAGGGCCAATTAC+CGG | + | chr8_1:46456054-46456073 | Msa1196770:CDS | 50.0% | |
AACCTCAAGGGCCAATTACC+GGG | + | chr8_1:46456055-46456074 | Msa1196770:CDS | 50.0% | |
AGTTTGTGTGGCCGTTTGTC+CGG | - | chr8_1:46456109-46456128 | None:intergenic | 50.0% | |
TGGAGCTTGAGGAGTTTGTG+TGG | - | chr8_1:46456121-46456140 | None:intergenic | 50.0% | |
ACTCCTCAAGCTCCATCTGT+TGG | + | chr8_1:46456126-46456145 | Msa1196770:CDS | 50.0% | |
GTACCAACAGATGGAGCTTG+AGG | - | chr8_1:46456132-46456151 | None:intergenic | 50.0% | |
TGGCGAAGCAGCATACATTC+CGG | - | chr8_1:46456187-46456206 | None:intergenic | 50.0% | |
! | TATGCTGCTTCGCCATCTGT+TGG | + | chr8_1:46456192-46456211 | Msa1196770:CDS | 50.0% |
AAAACTCCAGCACGTGGGAT+TGG | - | chr8_1:46456240-46456259 | None:intergenic | 50.0% | |
! | AGTTTTCGCTCCTCCTAGAG+AGG | + | chr8_1:46456254-46456273 | Msa1196770:CDS | 50.0% |
!! | ATAGGTTGGTCCTCTCTAGG+AGG | - | chr8_1:46456267-46456286 | None:intergenic | 50.0% |
!! | CCTATAGGTTGGTCCTCTCT+AGG | - | chr8_1:46456270-46456289 | None:intergenic | 50.0% |
CCTAGAGAGGACCAACCTAT+AGG | + | chr8_1:46456267-46456286 | Msa1196770:CDS | 50.0% | |
GGACCAACCTATAGGAGAAC+TGG | + | chr8_1:46456275-46456294 | Msa1196770:CDS | 50.0% | |
! | GCTTGAGGAGCATAAACTCC+GGG | - | chr8_1:46456339-46456358 | None:intergenic | 50.0% |
!! | ATTTCTGGTTCCAGAAGGCG+GGG | - | chr8_1:46456388-46456407 | None:intergenic | 50.0% |
AAACTCCGAGTCCAGCAAGT+GGG | - | chr8_1:46456428-46456447 | None:intergenic | 50.0% | |
TAAACTCCGAGTCCAGCAAG+TGG | - | chr8_1:46456429-46456448 | None:intergenic | 50.0% | |
TCGGGCAACCTATAGGAAGA+CGG | + | chr8_1:46456463-46456482 | Msa1196770:CDS | 50.0% | |
!! | CCAGGGGTACCAATGAACTT+GGG | + | chr8_1:46456573-46456592 | Msa1196770:CDS | 50.0% |
CCGAGGATGCTGTTGATCGA+TGG | + | chr8_1:46455087-46455106 | Msa1196770:CDS | 55.0% | |
AAATTGCGGCTGATGTGCCC+GGG | + | chr8_1:46455114-46455133 | Msa1196770:CDS | 55.0% | |
GAGGTTATCGTCCGCTAGCT+AGG | + | chr8_1:46455714-46455733 | Msa1196770:intron | 55.0% | |
CGTCCGCTAGCTAGGATTAG+TGG | + | chr8_1:46455722-46455741 | Msa1196770:intron | 55.0% | |
! | GGGCGTGGAGAAGTATGGAA+AGG | + | chr8_1:46455882-46455901 | Msa1196770:CDS | 55.0% |
TGGCCCTTGAGGTTCGACAT+AGG | - | chr8_1:46456049-46456068 | None:intergenic | 55.0% | |
GAAGCAGCATACATTCCGGC+AGG | - | chr8_1:46456183-46456202 | None:intergenic | 55.0% | |
AATCCTCCAATCCCACGTGC+TGG | + | chr8_1:46456231-46456250 | Msa1196770:CDS | 55.0% | |
GAGCGAAAACTCCAGCACGT+GGG | - | chr8_1:46456245-46456264 | None:intergenic | 55.0% | |
GTATCCGAAGTTGGCACTCC+AGG | + | chr8_1:46456300-46456319 | Msa1196770:CDS | 55.0% | |
CCAGGAATTCTGACTGCTCC+CGG | + | chr8_1:46456318-46456337 | Msa1196770:CDS | 55.0% | |
AACTCCGAGTCCAGCAAGTG+GGG | - | chr8_1:46456427-46456446 | None:intergenic | 55.0% | |
CCTATAGGTTGCCCGATCCA+AGG | - | chr8_1:46456459-46456478 | None:intergenic | 55.0% | |
CCTTGGATCGGGCAACCTAT+AGG | + | chr8_1:46456456-46456475 | Msa1196770:CDS | 55.0% | |
CGGGCAACCTATAGGAAGAC+GGG | + | chr8_1:46456464-46456483 | Msa1196770:CDS | 55.0% | |
TATCTGCTTTCGGCGCTGCA+GGG | + | chr8_1:46456490-46456509 | Msa1196770:CDS | 55.0% | |
!! | GCCAGGGGTACCAATGAACT+TGG | + | chr8_1:46456572-46456591 | Msa1196770:CDS | 55.0% |
CCCAAGTTCATTGGTACCCC+TGG | - | chr8_1:46456576-46456595 | None:intergenic | 55.0% | |
CCGAGGATGCTGTTGATCGA+TGG | + | chr8_1:46455087-46455106 | Msa1196770:CDS | 55.0% | |
AAATTGCGGCTGATGTGCCC+GGG | + | chr8_1:46455114-46455133 | Msa1196770:CDS | 55.0% | |
GAGGTTATCGTCCGCTAGCT+AGG | + | chr8_1:46455714-46455733 | Msa1196770:intron | 55.0% | |
CGTCCGCTAGCTAGGATTAG+TGG | + | chr8_1:46455722-46455741 | Msa1196770:intron | 55.0% | |
! | GGGCGTGGAGAAGTATGGAA+AGG | + | chr8_1:46455882-46455901 | Msa1196770:CDS | 55.0% |
TGGCCCTTGAGGTTCGACAT+AGG | - | chr8_1:46456049-46456068 | None:intergenic | 55.0% | |
GAAGCAGCATACATTCCGGC+AGG | - | chr8_1:46456183-46456202 | None:intergenic | 55.0% | |
AATCCTCCAATCCCACGTGC+TGG | + | chr8_1:46456231-46456250 | Msa1196770:CDS | 55.0% | |
GAGCGAAAACTCCAGCACGT+GGG | - | chr8_1:46456245-46456264 | None:intergenic | 55.0% | |
GTATCCGAAGTTGGCACTCC+AGG | + | chr8_1:46456300-46456319 | Msa1196770:CDS | 55.0% | |
CCAGGAATTCTGACTGCTCC+CGG | + | chr8_1:46456318-46456337 | Msa1196770:CDS | 55.0% | |
AACTCCGAGTCCAGCAAGTG+GGG | - | chr8_1:46456427-46456446 | None:intergenic | 55.0% | |
CCTATAGGTTGCCCGATCCA+AGG | - | chr8_1:46456459-46456478 | None:intergenic | 55.0% | |
CCTTGGATCGGGCAACCTAT+AGG | + | chr8_1:46456456-46456475 | Msa1196770:CDS | 55.0% | |
CGGGCAACCTATAGGAAGAC+GGG | + | chr8_1:46456464-46456483 | Msa1196770:CDS | 55.0% | |
TATCTGCTTTCGGCGCTGCA+GGG | + | chr8_1:46456490-46456509 | Msa1196770:CDS | 55.0% | |
!! | GCCAGGGGTACCAATGAACT+TGG | + | chr8_1:46456572-46456591 | Msa1196770:CDS | 55.0% |
CCCAAGTTCATTGGTACCCC+TGG | - | chr8_1:46456576-46456595 | None:intergenic | 55.0% | |
TGCCCGGTAATTGGCCCTTG+AGG | - | chr8_1:46456060-46456079 | None:intergenic | 60.0% | |
! | TATCCTCTGGCTCCACCTGC+CGG | + | chr8_1:46456165-46456184 | Msa1196770:CDS | 60.0% |
GCAGCATACATTCCGGCAGG+TGG | - | chr8_1:46456180-46456199 | None:intergenic | 60.0% | |
ACTCCAGCACGTGGGATTGG+AGG | - | chr8_1:46456237-46456256 | None:intergenic | 60.0% | |
GGAGCGAAAACTCCAGCACG+TGG | - | chr8_1:46456246-46456265 | None:intergenic | 60.0% | |
CCGGGAGCAGTCAGAATTCC+TGG | - | chr8_1:46456321-46456340 | None:intergenic | 60.0% | |
TATGTTGCAGCCCCGCCTTC+TGG | + | chr8_1:46456375-46456394 | Msa1196770:CDS | 60.0% | |
GATCATCCAGCCCCACTTGC+TGG | + | chr8_1:46456414-46456433 | Msa1196770:CDS | 60.0% | |
GTATCTGCTTTCGGCGCTGC+AGG | + | chr8_1:46456489-46456508 | Msa1196770:CDS | 60.0% | |
GCAGGGTTTCCTTCTGCTCC+CGG | + | chr8_1:46456507-46456526 | Msa1196770:CDS | 60.0% | |
TCCTTCTGCTCCCGGACACA+TGG | + | chr8_1:46456515-46456534 | Msa1196770:CDS | 60.0% | |
GCTCCCGGACACATGGCTTA+TGG | + | chr8_1:46456522-46456541 | Msa1196770:CDS | 60.0% | |
TGCCCGGTAATTGGCCCTTG+AGG | - | chr8_1:46456060-46456079 | None:intergenic | 60.0% | |
! | TATCCTCTGGCTCCACCTGC+CGG | + | chr8_1:46456165-46456184 | Msa1196770:CDS | 60.0% |
GCAGCATACATTCCGGCAGG+TGG | - | chr8_1:46456180-46456199 | None:intergenic | 60.0% | |
ACTCCAGCACGTGGGATTGG+AGG | - | chr8_1:46456237-46456256 | None:intergenic | 60.0% | |
GGAGCGAAAACTCCAGCACG+TGG | - | chr8_1:46456246-46456265 | None:intergenic | 60.0% | |
CCGGGAGCAGTCAGAATTCC+TGG | - | chr8_1:46456321-46456340 | None:intergenic | 60.0% | |
TATGTTGCAGCCCCGCCTTC+TGG | + | chr8_1:46456375-46456394 | Msa1196770:CDS | 60.0% | |
GATCATCCAGCCCCACTTGC+TGG | + | chr8_1:46456414-46456433 | Msa1196770:CDS | 60.0% | |
GTATCTGCTTTCGGCGCTGC+AGG | + | chr8_1:46456489-46456508 | Msa1196770:CDS | 60.0% | |
GCAGGGTTTCCTTCTGCTCC+CGG | + | chr8_1:46456507-46456526 | Msa1196770:CDS | 60.0% | |
TCCTTCTGCTCCCGGACACA+TGG | + | chr8_1:46456515-46456534 | Msa1196770:CDS | 60.0% | |
GCTCCCGGACACATGGCTTA+TGG | + | chr8_1:46456522-46456541 | Msa1196770:CDS | 60.0% | |
ATTCCGGCAGGTGGAGCCAG+AGG | - | chr8_1:46456171-46456190 | None:intergenic | 65.0% | |
! | CCAGCCCCACTTGCTGGACT+CGG | + | chr8_1:46456420-46456439 | Msa1196770:CDS | 65.0% |
GCCATGTGTCCGGGAGCAGA+AGG | - | chr8_1:46456519-46456538 | None:intergenic | 65.0% | |
ATTCCGGCAGGTGGAGCCAG+AGG | - | chr8_1:46456171-46456190 | None:intergenic | 65.0% | |
! | CCAGCCCCACTTGCTGGACT+CGG | + | chr8_1:46456420-46456439 | Msa1196770:CDS | 65.0% |
GCCATGTGTCCGGGAGCAGA+AGG | - | chr8_1:46456519-46456538 | None:intergenic | 65.0% | |
CCGAGTCCAGCAAGTGGGGC+TGG | - | chr8_1:46456423-46456442 | None:intergenic | 70.0% | |
CCGAGTCCAGCAAGTGGGGC+TGG | - | chr8_1:46456423-46456442 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_1 | gene | 46455008 | 46456635 | 46455008 | ID=Msa1196770;Name=Msa1196770 |
chr8_1 | mRNA | 46455008 | 46456635 | 46455008 | ID=Msa1196770-mRNA-1;Parent=Msa1196770;Name=Msa1196770-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|362 |
chr8_1 | exon | 46455008 | 46455330 | 46455008 | ID=Msa1196770-mRNA-1:exon:14789;Parent=Msa1196770-mRNA-1 |
chr8_1 | exon | 46455870 | 46456635 | 46455870 | ID=Msa1196770-mRNA-1:exon:14790;Parent=Msa1196770-mRNA-1 |
chr8_1 | CDS | 46455008 | 46455330 | 46455008 | ID=Msa1196770-mRNA-1:cds;Parent=Msa1196770-mRNA-1 |
chr8_1 | CDS | 46455870 | 46456635 | 46455870 | ID=Msa1196770-mRNA-1:cds;Parent=Msa1196770-mRNA-1 |
Gene Sequence |
Protein sequence |