AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1197050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1197050 MtrunA17_Chr8g0365711 89.486 428 34 3 1 427 1 418 0.0 784
Msa1197050 MtrunA17_Chr1g0211081 30.192 520 261 15 3 430 9 518 6.66e-72 236
Msa1197050 MtrunA17_Chr2g0298751 33.140 172 112 2 243 413 51 220 1.22e-24 102
Msa1197050 MtrunA17_Chr4g0048851 33.152 184 100 4 239 422 42 202 7.30e-21 90.5
Msa1197050 MtrunA17_Chr3g0131691 30.047 213 137 5 217 424 270 475 4.68e-20 92.4
Msa1197050 MtrunA17_Chr4g0028071 27.586 203 131 4 235 434 140 329 2.42e-18 85.9
Msa1197050 MtrunA17_Chr2g0320291 31.288 163 94 4 236 397 125 270 8.13e-18 84.0
Msa1197050 MtrunA17_Chr7g0252041 28.788 198 109 5 243 424 285 466 2.41e-16 81.3
Msa1197050 MtrunA17_Chr4g0054571 27.570 214 131 6 224 425 129 330 1.64e-14 74.3
Msa1197050 MtrunA17_Chr4g0049331 25.692 253 167 8 158 407 50 284 2.63e-12 67.8
Msa1197050 MtrunA17_Chr8g0366751 26.214 206 140 4 205 408 423 618 3.64e-12 68.6
Msa1197050 MtrunA17_Chr5g0411341 29.630 162 104 4 248 408 497 649 6.06e-12 67.8
Msa1197050 MtrunA17_Chr7g0225901 25.153 163 106 4 246 407 90 237 8.18e-12 65.5
Msa1197050 MtrunA17_Chr2g0280161 25.134 187 127 3 221 407 154 327 1.10e-11 66.2
Msa1197050 MtrunA17_Chr4g0033391 25.301 166 99 3 246 407 149 293 1.26e-11 65.9
Msa1197050 MtrunA17_Chr1g0185621 23.188 207 138 4 236 435 468 660 2.77e-11 65.9
Msa1197050 MtrunA17_Chr5g0400661 25.146 171 109 3 246 407 151 311 4.37e-11 63.9
Msa1197050 MtrunA17_Chr4g0002801 22.868 258 167 8 176 425 98 331 7.12e-11 63.5
Msa1197050 MtrunA17_Chr4g0054581 24.074 162 113 4 246 407 200 351 8.48e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1197050 AT1G10610.1 32.045 440 268 8 3 425 10 435 6.96e-69 226
Msa1197050 AT1G10610.2 30.435 414 257 8 29 425 6 405 1.11e-53 185
Msa1197050 AT2G16910.1 42.763 152 73 5 3 147 8 152 4.53e-35 137
Msa1197050 AT2G16910.1 37.255 204 119 3 242 436 312 515 1.43e-30 124
Msa1197050 AT1G10610.3 27.350 351 230 6 87 425 1 338 8.09e-34 130
Msa1197050 AT5G57150.1 32.143 196 118 4 243 436 53 235 3.83e-26 107
Msa1197050 AT5G57150.2 33.529 170 104 3 243 410 54 216 4.50e-26 106
Msa1197050 AT5G57150.3 33.929 168 102 3 243 408 54 214 7.01e-26 105
Msa1197050 AT5G57150.5 33.929 168 102 3 243 408 53 213 7.02e-26 105
Msa1197050 AT5G57150.4 33.929 168 102 3 243 408 54 214 8.54e-26 106
Msa1197050 AT4G29930.3 28.261 184 107 4 243 410 53 227 9.77e-19 86.3
Msa1197050 AT4G29930.7 28.261 184 107 4 243 410 53 227 9.77e-19 86.3
Msa1197050 AT4G29930.1 28.415 183 106 4 243 409 53 226 1.25e-18 85.9
Msa1197050 AT4G29930.6 28.571 168 99 3 243 409 53 200 1.84e-18 84.7
Msa1197050 AT1G12860.1 32.609 184 114 4 243 424 266 441 5.56e-18 86.7
Msa1197050 AT4G29930.5 27.381 168 100 3 243 410 53 198 6.31e-18 83.2
Msa1197050 AT4G29930.2 28.161 174 97 3 243 413 53 201 6.96e-18 82.8
Msa1197050 AT2G28160.2 29.688 192 108 6 219 396 94 272 3.54e-17 82.4
Msa1197050 AT2G28160.1 29.688 192 108 6 219 396 94 272 3.89e-17 82.4
Msa1197050 AT1G12860.2 33.735 166 102 3 243 408 266 423 1.29e-16 82.0
Msa1197050 AT3G26744.1 29.592 196 108 4 243 424 306 485 1.09e-15 79.7
Msa1197050 AT3G26744.4 29.592 196 108 4 243 424 306 485 1.09e-15 79.7
Msa1197050 AT3G26744.2 29.592 196 108 4 243 424 306 485 1.09e-15 79.7
Msa1197050 AT5G46760.1 28.837 215 122 5 229 426 387 587 6.72e-15 77.4
Msa1197050 AT4G29930.4 46.479 71 34 1 243 313 53 119 6.87e-15 73.2
Msa1197050 AT4G17880.1 32.727 165 84 6 248 408 420 561 8.27e-15 77.0
Msa1197050 AT4G21330.1 29.609 179 106 4 229 402 16 179 1.13e-14 73.2
Msa1197050 AT3G26744.6 29.775 178 97 3 243 408 306 467 3.38e-14 75.1
Msa1197050 AT5G46830.1 27.624 181 115 3 248 428 347 511 5.94e-13 71.2
Msa1197050 AT5G41315.2 25.000 180 120 3 232 399 437 613 1.07e-12 70.9
Msa1197050 AT5G41315.1 25.000 180 120 3 232 399 429 605 1.07e-12 70.9
Msa1197050 AT5G41315.3 25.000 180 120 3 232 399 434 610 1.10e-12 70.5
Msa1197050 AT1G32640.1 32.317 164 87 5 248 408 456 598 1.44e-12 70.1
Msa1197050 AT1G63650.3 26.667 180 101 5 236 399 400 564 2.41e-12 69.3
Msa1197050 AT1G63650.1 26.667 180 101 5 236 399 400 564 2.41e-12 69.3
Msa1197050 AT1G63650.2 26.667 180 101 5 236 399 400 564 2.41e-12 69.3
Msa1197050 AT4G37850.2 28.736 174 103 6 245 414 153 309 4.38e-12 67.4
Msa1197050 AT4G37850.1 28.736 174 103 6 245 414 153 309 4.38e-12 67.4

Find 84 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGTTGTTGTTTGGAAATA+TGG 0.204753 8_1:+47207680 Msa1197050:CDS
TTCATGGTATTTATATCTTC+TGG 0.214842 8_1:-47208510 None:intergenic
TTACAATGTCTCTTTATTCT+AGG 0.232812 8_1:+47208077 Msa1197050:CDS
AGATATACCTTGGTTATATT+CGG 0.245816 8_1:-47208912 None:intergenic
AACTTGTGAAGAAAATAATT+TGG 0.257116 8_1:+47207979 Msa1197050:CDS
TCAACAAGACCACCAATAAT+AGG 0.261178 8_1:-47208374 None:intergenic
ATCGGTGGGAGGTAGGTTTC+TGG 0.272194 8_1:-47209312 None:intergenic
TTATCATTTGATTCAAACTA+TGG 0.273196 8_1:+47208657 Msa1197050:CDS
CAAAGTTCTGAACATTCTTA+TGG 0.282069 8_1:+47209648 Msa1197050:CDS
TTCTGACTGGATGATGAAAA+AGG 0.289400 8_1:-47208021 None:intergenic
GAATAAAGAGACATTGTAAA+AGG 0.329076 8_1:-47208073 None:intergenic
CTTGGGATTATGTTGTTGTT+TGG 0.348246 8_1:+47207672 Msa1197050:CDS
ATGGAAGCAATGGATTCATT+TGG 0.352938 8_1:+47209586 Msa1197050:CDS
TCATGGTATTTATATCTTCT+GGG 0.361635 8_1:-47208509 None:intergenic
GCAAATATGACCACATTAGA+TGG 0.361996 8_1:+47209625 Msa1197050:CDS
ATAATTTGGCTTCCATTTGT+AGG 0.380168 8_1:+47207993 Msa1197050:CDS
TGTAGGTTTATTGAGTGGTT+GGG 0.389757 8_1:+47207908 Msa1197050:intron
TTTGTAGCATAATCATTGTA+AGG 0.397551 8_1:-47210654 None:intergenic
GATATACCTTGGTTATATTC+GGG 0.407953 8_1:-47208911 None:intergenic
ACCTCATGGATAAGCCATCT+TGG 0.422456 8_1:-47208233 None:intergenic
GGATGCGATTGAATATATAA+TGG 0.425745 8_1:+47209172 Msa1197050:CDS
AACTGCAATCCTAGCATTGA+AGG 0.428943 8_1:+47208600 Msa1197050:CDS
CAACAAGACCACCAATAATA+GGG 0.429497 8_1:-47208373 None:intergenic
TTGCGTCTTTCTAGTGGAAT+CGG 0.434907 8_1:-47209351 None:intergenic
GTGTAGGTTTATTGAGTGGT+TGG 0.438543 8_1:+47207907 Msa1197050:intron
CTTTGTTGAGACTAAAGCTT+GGG 0.449681 8_1:+47207655 Msa1197050:CDS
CTCCATTTGCGTCTTTCTAG+TGG 0.453748 8_1:-47209357 None:intergenic
TGGTTGGGTTGTTGCTGTTG+TGG 0.457628 8_1:+47207923 Msa1197050:CDS
ATCTTGTCACAGAGAGGAAT+AGG 0.458288 8_1:+47208844 Msa1197050:CDS
TCTGAACATTCTTATGGTTG+AGG 0.459060 8_1:+47209654 Msa1197050:CDS
TCACAAGTCTTTGTTCTGAC+TGG 0.460884 8_1:-47208034 None:intergenic
TAATTTGGCTTCCATTTGTA+GGG 0.474687 8_1:+47207994 Msa1197050:CDS
GTGTGCTGATATGAACTTCA+TGG 0.474790 8_1:-47208526 None:intergenic
CCGAAGTGTCCTTCAATGCT+AGG 0.480361 8_1:-47208609 None:intergenic
TTGGGTTGTTGCTGTTGTGG+TGG 0.496316 8_1:+47207926 Msa1197050:CDS
AGACATTGTAAAAGGAAGCT+TGG 0.509673 8_1:-47208065 None:intergenic
AGAATTTCAAGAAGAGGTCA+AGG 0.513955 8_1:+47209214 Msa1197050:CDS
TTTGTCCCAGGCAACTGCGC+AGG 0.514458 8_1:+47210396 Msa1197050:intron
TTTGTAGTGTGCTCTTCCCA+CGG 0.515454 8_1:-47209253 None:intergenic
TTCAAGGTTGATGGAAGCAA+TGG 0.515685 8_1:+47209576 Msa1197050:CDS
TGAGAAGGTGAAGTTGAAAG+AGG 0.517970 8_1:+47207955 Msa1197050:CDS
TCTAGCGTCCATTGTGGCAA+TGG 0.518359 8_1:+47208762 Msa1197050:CDS
CTTCCTCGCCATTGCCACAA+TGG 0.519724 8_1:-47208770 None:intergenic
TTCCACTAGAAAGACGCAAA+TGG 0.525563 8_1:+47209355 Msa1197050:CDS
CAGAACTTTGCCATCTAATG+TGG 0.546980 8_1:-47209635 None:intergenic
AGAGAAAGAATTTCAAGAAG+AGG 0.551008 8_1:+47209208 Msa1197050:CDS
GGACGAACTTTGATTAAGAT+CGG 0.554545 8_1:-47209330 None:intergenic
GATTAAGATCGGTGGGAGGT+AGG 0.554598 8_1:-47209319 None:intergenic
GCATGATACACTTTCTCTTG+AGG 0.560146 8_1:-47208816 None:intergenic
GGTCAAGGCTTTAGATGTTG+AGG 0.563435 8_1:+47209229 Msa1197050:CDS
CAAGCTTTAGTCTCAACAAA+GGG 0.564172 8_1:-47207653 None:intergenic
CCTTTGTTGAGACTAAAGCT+TGG 0.572137 8_1:+47207654 Msa1197050:CDS
CTTTAGATGTTGAGGACCGT+GGG 0.572629 8_1:+47209237 Msa1197050:CDS
CGATATCACAACAACCAAGA+TGG 0.578017 8_1:+47208219 Msa1197050:CDS
GCTTTAGATGTTGAGGACCG+TGG 0.580314 8_1:+47209236 Msa1197050:CDS
GAACTTTGATTAAGATCGGT+GGG 0.584277 8_1:-47209326 None:intergenic
AATGATAAGTGCTCAGTCGA+AGG 0.597065 8_1:-47208642 None:intergenic
CCAAGCTTTAGTCTCAACAA+AGG 0.597367 8_1:-47207654 None:intergenic
GTGATATCGCTACCTCTGCA+TGG 0.597660 8_1:-47208205 None:intergenic
AGACAAAGAAAATATTGTCA+AGG 0.599506 8_1:+47208791 Msa1197050:CDS
ATAAAATTTCAGCGAAACGT+CGG 0.600110 8_1:+47208733 Msa1197050:CDS
AGTATTTGATGCAGAAAACA+AGG 0.604081 8_1:+47210443 Msa1197050:CDS
CGAACTTTGATTAAGATCGG+TGG 0.611151 8_1:-47209327 None:intergenic
CCTAGCATTGAAGGACACTT+CGG 0.612365 8_1:+47208609 Msa1197050:CDS
GTAGAAGTGAATCATATCGC+CGG 0.619401 8_1:+47209505 Msa1197050:CDS
GATCTACAGCGTCCATGCAG+AGG 0.623164 8_1:+47208193 Msa1197050:intron
TCTTGTGTAGGTTTATTGAG+TGG 0.624431 8_1:+47207903 Msa1197050:intron
CGTCCATTGTGGCAATGGCG+AGG 0.625790 8_1:+47208767 Msa1197050:CDS
AATATATAATGGAATTGCAG+AGG 0.626528 8_1:+47209183 Msa1197050:CDS
AGGAGGAACAGAATAAAACA+AGG 0.627576 8_1:+47208864 Msa1197050:CDS
GGTTGATTCAAATATTCATG+AGG 0.631716 8_1:-47208690 None:intergenic
AAAGACAAAGAACTTGCAGA+AGG 0.635182 8_1:+47209287 Msa1197050:CDS
GGACAGAGTAGCAATTCTTG+AGG 0.640821 8_1:+47209151 Msa1197050:CDS
TTGTCACAGAGAGGAATAGG+AGG 0.646571 8_1:+47208847 Msa1197050:CDS
TGTAGTTCTAGCGTCCATTG+TGG 0.653586 8_1:+47208756 Msa1197050:CDS
CACTAGAAAGACGCAAATGG+AGG 0.657254 8_1:+47209358 Msa1197050:CDS
ACCAAGATGGCTTATCCATG+AGG 0.659718 8_1:+47208232 Msa1197050:CDS
CTGTGCTGTGAGCAGAAGCA+TGG 0.666886 8_1:+47209547 Msa1197050:CDS
TTGTGGTGGAAATATTGAGA+AGG 0.686408 8_1:+47207940 Msa1197050:CDS
TCTAGTCCCGAATATAACCA+AGG 0.688391 8_1:+47208905 Msa1197050:CDS
GGAGGAACAGAATAAAACAA+GGG 0.689769 8_1:+47208865 Msa1197050:CDS
AGTCAGAACAAAGACTTGTG+AGG 0.691527 8_1:+47208036 Msa1197050:CDS
CTTTGATTAAGATCGGTGGG+AGG 0.696601 8_1:-47209323 None:intergenic
AATATGGAAATGATCCAACA+AGG 0.709023 8_1:+47207696 Msa1197050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCTATATTTAATCAATGAA+AGG + chr8_1:47208149-47208168 Msa1197050:intron 15.0%
!! ATATAAATCTTAGTACTTAT+TGG + chr8_1:47208421-47208440 Msa1197050:intron 15.0%
!!! AATTTTGATTAAGATAATGT+GGG - chr8_1:47210045-47210064 None:intergenic 15.0%
!!! AAATTTTGATTAAGATAATG+TGG - chr8_1:47210046-47210065 None:intergenic 15.0%
!! TTACTAATGAATAACAAGAT+AGG - chr8_1:47207731-47207750 None:intergenic 20.0%
!!! TCATTTTCTCAAGTTATTAT+TGG + chr8_1:47207797-47207816 Msa1197050:intron 20.0%
!! AACTTGTGAAGAAAATAATT+TGG + chr8_1:47207979-47207998 Msa1197050:CDS 20.0%
!! TTATCATTTGATTCAAACTA+TGG + chr8_1:47208657-47208676 Msa1197050:CDS 20.0%
!! TAAACAATTTAGATATACCT+TGG - chr8_1:47208925-47208944 None:intergenic 20.0%
!!! TATAACTTTTACCAAAATTG+TGG - chr8_1:47209030-47209049 None:intergenic 20.0%
!! TTGAATCTTCAAGAAAATTA+CGG + chr8_1:47209052-47209071 Msa1197050:intron 20.0%
!!! AATTTTATTGCTTCTTTTCT+TGG + chr8_1:47209444-47209463 Msa1197050:intron 20.0%
!!! TATATTCGATTTGAAGTATT+CGG - chr8_1:47210143-47210162 None:intergenic 20.0%
!!! TAGTTTTTCAAAATTGTCTA+CGG - chr8_1:47210239-47210258 None:intergenic 20.0%
!! AACGAGTTTATAGATAATAA+CGG - chr8_1:47210513-47210532 None:intergenic 20.0%
!!! TATGTTGTTGTTTGGAAATA+TGG + chr8_1:47207680-47207699 Msa1197050:CDS 25.0%
! GAATAAAGAGACATTGTAAA+AGG - chr8_1:47208076-47208095 None:intergenic 25.0%
! TTACAATGTCTCTTTATTCT+AGG + chr8_1:47208077-47208096 Msa1197050:CDS 25.0%
! ACACAAATTAATTTACCTCA+TGG - chr8_1:47208250-47208269 None:intergenic 25.0%
!!! ATGAGGTAAATTAATTTGTG+TGG + chr8_1:47208249-47208268 Msa1197050:intron 25.0%
!!! TTAACTGTTAATGTTTTGAC+AGG + chr8_1:47208325-47208344 Msa1197050:intron 25.0%
!!! CAAGTTTTAATCCCTATTAT+TGG + chr8_1:47208362-47208381 Msa1197050:CDS 25.0%
! TCATGGTATTTATATCTTCT+GGG - chr8_1:47208512-47208531 None:intergenic 25.0%
! TTCATGGTATTTATATCTTC+TGG - chr8_1:47208513-47208532 None:intergenic 25.0%
!! CTGAAATTTTATTGTGTTTG+TGG - chr8_1:47208725-47208744 None:intergenic 25.0%
! AGACAAAGAAAATATTGTCA+AGG + chr8_1:47208791-47208810 Msa1197050:CDS 25.0%
! AGATATACCTTGGTTATATT+CGG - chr8_1:47208915-47208934 None:intergenic 25.0%
!! AATATATAATGGAATTGCAG+AGG + chr8_1:47209183-47209202 Msa1197050:CDS 25.0%
!! CTTAATCATGAAATCTTTTC+CGG - chr8_1:47209527-47209546 None:intergenic 25.0%
! TCTAATTTAAGTACTCAAAC+TGG - chr8_1:47209780-47209799 None:intergenic 25.0%
! AATGAGATTATTGTAGATAG+TGG - chr8_1:47210174-47210193 None:intergenic 25.0%
! AAAACTAGAGATTTCATTCA+TGG + chr8_1:47210252-47210271 Msa1197050:intron 25.0%
! TATCTCCATATTTAAAGACT+AGG + chr8_1:47210286-47210305 Msa1197050:intron 25.0%
!! ATCAACCTAGTCTTTAAATA+TGG - chr8_1:47210294-47210313 None:intergenic 25.0%
! AATAGAGAATCAATGAAACA+GGG - chr8_1:47210328-47210347 None:intergenic 25.0%
!! AAATACTCTCTGATTTTCTT+CGG - chr8_1:47210430-47210449 None:intergenic 25.0%
! AATTATGAAGTTGAGGAAAA+TGG + chr8_1:47210482-47210501 Msa1197050:intron 25.0%
! GTTATTATCTATAAACTCGT+TGG + chr8_1:47210512-47210531 Msa1197050:intron 25.0%
!!! ATCGAATATCCATTTTTTCT+TGG + chr8_1:47210606-47210625 Msa1197050:intron 25.0%
!!! TCGAATATCCATTTTTTCTT+GGG + chr8_1:47210607-47210626 Msa1197050:intron 25.0%
! TTTGTAGCATAATCATTGTA+AGG - chr8_1:47210657-47210676 None:intergenic 25.0%
AATATGGAAATGATCCAACA+AGG + chr8_1:47207696-47207715 Msa1197050:CDS 30.0%
!!! ATAGGTTTTTAGTACCTTGT+TGG - chr8_1:47207713-47207732 None:intergenic 30.0%
TATGAAACACATATACTCCT+CGG + chr8_1:47207756-47207775 Msa1197050:intron 30.0%
TAACTTGAGAAAATGACATC+AGG - chr8_1:47207793-47207812 None:intergenic 30.0%
ATCCAATATTTCTCTTGTGT+AGG + chr8_1:47207891-47207910 Msa1197050:intron 30.0%
AACCTACACAAGAGAAATAT+TGG - chr8_1:47207896-47207915 None:intergenic 30.0%
! ATAATTTGGCTTCCATTTGT+AGG + chr8_1:47207993-47208012 Msa1197050:CDS 30.0%
! TAATTTGGCTTCCATTTGTA+GGG + chr8_1:47207994-47208013 Msa1197050:CDS 30.0%
!! GTTTTAATCCCTATTATTGG+TGG + chr8_1:47208365-47208384 Msa1197050:CDS 30.0%
!!! CACAATCATTTTAGAACAGA+CGG - chr8_1:47208452-47208471 None:intergenic 30.0%
! GGTTGATTCAAATATTCATG+AGG - chr8_1:47208693-47208712 None:intergenic 30.0%
ATAAAATTTCAGCGAAACGT+CGG + chr8_1:47208733-47208752 Msa1197050:CDS 30.0%
GATATACCTTGGTTATATTC+GGG - chr8_1:47208914-47208933 None:intergenic 30.0%
! AACTTTTACCAAAATTGTGG+TGG - chr8_1:47209027-47209046 None:intergenic 30.0%
! GTATCTAATCGTCTCAATTT+TGG + chr8_1:47209123-47209142 Msa1197050:intron 30.0%
GGATGCGATTGAATATATAA+TGG + chr8_1:47209172-47209191 Msa1197050:CDS 30.0%
AGAGAAAGAATTTCAAGAAG+AGG + chr8_1:47209208-47209227 Msa1197050:CDS 30.0%
! GATGTTCTTTTACTATGTCA+TGG + chr8_1:47209409-47209428 Msa1197050:intron 30.0%
!! CAAAGTTCTGAACATTCTTA+TGG + chr8_1:47209648-47209667 Msa1197050:CDS 30.0%
GATAATAGCAAACTAACTCA+TGG - chr8_1:47209717-47209736 None:intergenic 30.0%
!! GAGTTAGTTTGCTATTATCT+TGG + chr8_1:47209718-47209737 Msa1197050:intron 30.0%
AACATTGCCTAATCATTCTT+TGG - chr8_1:47209828-47209847 None:intergenic 30.0%
AAGAATGATTAGGCAATGTT+TGG + chr8_1:47209828-47209847 Msa1197050:intron 30.0%
TTCGTATGATCAAAATAGAG+CGG + chr8_1:47209897-47209916 Msa1197050:intron 30.0%
AGCTTAAATACTACTTGAAG+TGG - chr8_1:47209997-47210016 None:intergenic 30.0%
TTTAAGCTTAAAGCTTACAG+CGG + chr8_1:47210009-47210028 Msa1197050:intron 30.0%
GAATAGAGAATCAATGAAAC+AGG - chr8_1:47210329-47210348 None:intergenic 30.0%
TAACCTCGTTACAATAGAAA+GGG - chr8_1:47210373-47210392 None:intergenic 30.0%
TTAACCTCGTTACAATAGAA+AGG - chr8_1:47210374-47210393 None:intergenic 30.0%
! AATACTCTCTGATTTTCTTC+GGG - chr8_1:47210429-47210448 None:intergenic 30.0%
AGTATTTGATGCAGAAAACA+AGG + chr8_1:47210443-47210462 Msa1197050:CDS 30.0%
ACAAAGCAATTATGAAGTTG+AGG + chr8_1:47210475-47210494 Msa1197050:intron 30.0%
AGCAACTTCATAGAAAAAGT+TGG + chr8_1:47210570-47210589 Msa1197050:intron 30.0%
GTCATAAACCCAAGAAAAAA+TGG - chr8_1:47210618-47210637 None:intergenic 30.0%
!!! TTCTGCCACATTTTTTAGTT+TGG - chr8_1:47210716-47210735 None:intergenic 30.0%
! CAAGCTTTAGTCTCAACAAA+GGG - chr8_1:47207656-47207675 None:intergenic 35.0%
CTTTGTTGAGACTAAAGCTT+GGG + chr8_1:47207655-47207674 Msa1197050:CDS 35.0%
! CTTGGGATTATGTTGTTGTT+TGG + chr8_1:47207672-47207691 Msa1197050:CDS 35.0%
!! TCAAGTTATTATTGGTGTCG+AGG + chr8_1:47207805-47207824 Msa1197050:intron 35.0%
TCTTGTGTAGGTTTATTGAG+TGG + chr8_1:47207903-47207922 Msa1197050:intron 35.0%
TGTAGGTTTATTGAGTGGTT+GGG + chr8_1:47207908-47207927 Msa1197050:intron 35.0%
! TTGTGGTGGAAATATTGAGA+AGG + chr8_1:47207940-47207959 Msa1197050:CDS 35.0%
!! AAAAAGGGTATCCCTACAAA+TGG - chr8_1:47208008-47208027 None:intergenic 35.0%
TCTGACTGGATGATGAAAAA+GGG - chr8_1:47208023-47208042 None:intergenic 35.0%
TTCTGACTGGATGATGAAAA+AGG - chr8_1:47208024-47208043 None:intergenic 35.0%
AGACATTGTAAAAGGAAGCT+TGG - chr8_1:47208068-47208087 None:intergenic 35.0%
!!! ATGTTTTGACAGGACTTAGT+TGG + chr8_1:47208335-47208354 Msa1197050:intron 35.0%
CAACAAGACCACCAATAATA+GGG - chr8_1:47208376-47208395 None:intergenic 35.0%
TCAACAAGACCACCAATAAT+AGG - chr8_1:47208377-47208396 None:intergenic 35.0%
! TTGTGTTTGTGGCTTTTAAG+TGG - chr8_1:47208714-47208733 None:intergenic 35.0%
CTAAAAATCTTGTCACAGAG+AGG + chr8_1:47208838-47208857 Msa1197050:CDS 35.0%
AGGAGGAACAGAATAAAACA+AGG + chr8_1:47208864-47208883 Msa1197050:CDS 35.0%
GGAGGAACAGAATAAAACAA+GGG + chr8_1:47208865-47208884 Msa1197050:CDS 35.0%
! AACAAGGGCTTTTTACTCTA+AGG + chr8_1:47208880-47208899 Msa1197050:CDS 35.0%
TGAGTTTGCCAGAATTACAT+TGG + chr8_1:47209000-47209019 Msa1197050:intron 35.0%
AGAATTTCAAGAAGAGGTCA+AGG + chr8_1:47209214-47209233 Msa1197050:CDS 35.0%
AAAGACAAAGAACTTGCAGA+AGG + chr8_1:47209287-47209306 Msa1197050:CDS 35.0%
GAACTTTGATTAAGATCGGT+GGG - chr8_1:47209329-47209348 None:intergenic 35.0%
GGACGAACTTTGATTAAGAT+CGG - chr8_1:47209333-47209352 None:intergenic 35.0%
! ATGGAAGCAATGGATTCATT+TGG + chr8_1:47209586-47209605 Msa1197050:CDS 35.0%
GCAAATATGACCACATTAGA+TGG + chr8_1:47209625-47209644 Msa1197050:CDS 35.0%
TCTGAACATTCTTATGGTTG+AGG + chr8_1:47209654-47209673 Msa1197050:CDS 35.0%
ACATTCTTATGGTTGAGGTA+AGG + chr8_1:47209659-47209678 Msa1197050:intron 35.0%
CATTCTTATGGTTGAGGTAA+GGG + chr8_1:47209660-47209679 Msa1197050:intron 35.0%
! AACTAACTCATGGATTTTCG+TGG - chr8_1:47209707-47209726 None:intergenic 35.0%
AAACTGGAATGTGAAAAGTG+TGG - chr8_1:47209764-47209783 None:intergenic 35.0%
! CTAATCATTCTTTGGAAGGA+AGG - chr8_1:47209820-47209839 None:intergenic 35.0%
CTTCCTTCCAAAGAATGATT+AGG + chr8_1:47209818-47209837 Msa1197050:intron 35.0%
TTGCCTAATCATTCTTTGGA+AGG - chr8_1:47209824-47209843 None:intergenic 35.0%
! TGATCAAAATAGAGCGGTTT+TGG + chr8_1:47209903-47209922 Msa1197050:intron 35.0%
AAGGGAATCTGATGAACTTA+CGG - chr8_1:47210355-47210374 None:intergenic 35.0%
ATTCCCTTTCTATTGTAACG+AGG + chr8_1:47210367-47210386 Msa1197050:intron 35.0%
TATGAAGTTGAGGAAAATGG+TGG + chr8_1:47210485-47210504 Msa1197050:intron 35.0%
! AAACTCGTTGGCTGAAAAAT+TGG + chr8_1:47210524-47210543 Msa1197050:intron 35.0%
CTTCATAGAAAAAGTTGGAC+TGG + chr8_1:47210575-47210594 Msa1197050:intron 35.0%
!! CGTCTTTTTGCAATTTTAGC+AGG - chr8_1:47210693-47210712 None:intergenic 35.0%
AGACGCCAAACTAAAAAATG+TGG + chr8_1:47210708-47210727 Msa1197050:CDS 35.0%
! CCAAGCTTTAGTCTCAACAA+AGG - chr8_1:47207657-47207676 None:intergenic 40.0%
CCTTTGTTGAGACTAAAGCT+TGG + chr8_1:47207654-47207673 Msa1197050:CDS 40.0%
GTGTAGGTTTATTGAGTGGT+TGG + chr8_1:47207907-47207926 Msa1197050:intron 40.0%
TGAGAAGGTGAAGTTGAAAG+AGG + chr8_1:47207955-47207974 Msa1197050:CDS 40.0%
TCACAAGTCTTTGTTCTGAC+TGG - chr8_1:47208037-47208056 None:intergenic 40.0%
AGTCAGAACAAAGACTTGTG+AGG + chr8_1:47208036-47208055 Msa1197050:CDS 40.0%
CGATATCACAACAACCAAGA+TGG + chr8_1:47208219-47208238 Msa1197050:CDS 40.0%
! GTGTGCTGATATGAACTTCA+TGG - chr8_1:47208529-47208548 None:intergenic 40.0%
! AACTGCAATCCTAGCATTGA+AGG + chr8_1:47208600-47208619 Msa1197050:CDS 40.0%
AATGATAAGTGCTCAGTCGA+AGG - chr8_1:47208645-47208664 None:intergenic 40.0%
GCATGATACACTTTCTCTTG+AGG - chr8_1:47208819-47208838 None:intergenic 40.0%
ATCTTGTCACAGAGAGGAAT+AGG + chr8_1:47208844-47208863 Msa1197050:CDS 40.0%
TCTAGTCCCGAATATAACCA+AGG + chr8_1:47208905-47208924 Msa1197050:CDS 40.0%
GTAATTCTGGCAAACTCAAC+AGG - chr8_1:47208998-47209017 None:intergenic 40.0%
! ACATTGGACCACCACAATTT+TGG + chr8_1:47209016-47209035 Msa1197050:intron 40.0%
TATTGATCTGAACGTGCACT+AGG + chr8_1:47209101-47209120 Msa1197050:intron 40.0%
!! ATCGTCTCAATTTTGGCAGA+TGG + chr8_1:47209130-47209149 Msa1197050:intron 40.0%
CGAACTTTGATTAAGATCGG+TGG - chr8_1:47209330-47209349 None:intergenic 40.0%
! TTGCGTCTTTCTAGTGGAAT+CGG - chr8_1:47209354-47209373 None:intergenic 40.0%
TTCCACTAGAAAGACGCAAA+TGG + chr8_1:47209355-47209374 Msa1197050:CDS 40.0%
GTAGAAGTGAATCATATCGC+CGG + chr8_1:47209505-47209524 Msa1197050:CDS 40.0%
!! AGAAGCATGGTGTGTTTTCA+AGG + chr8_1:47209560-47209579 Msa1197050:CDS 40.0%
!! TGGTGTGTTTTCAAGGTTGA+TGG + chr8_1:47209567-47209586 Msa1197050:CDS 40.0%
!! TTCAAGGTTGATGGAAGCAA+TGG + chr8_1:47209576-47209595 Msa1197050:CDS 40.0%
CAGAACTTTGCCATCTAATG+TGG - chr8_1:47209638-47209657 None:intergenic 40.0%
!! TGAAAAGTGTGGTTTGGTGT+GGG - chr8_1:47209753-47209772 None:intergenic 40.0%
! GGAATGTGAAAAGTGTGGTT+TGG - chr8_1:47209759-47209778 None:intergenic 40.0%
! GCTATTTGTTACAAGCTAGC+AGG - chr8_1:47209863-47209882 None:intergenic 40.0%
AAATTGTCTACGGCTCTGTT+TGG - chr8_1:47210229-47210248 None:intergenic 40.0%
GAATCTGATGAACTTACGGA+TGG - chr8_1:47210351-47210370 None:intergenic 40.0%
! ACGAGGTTAAATTTTGTCCC+AGG + chr8_1:47210384-47210403 Msa1197050:intron 40.0%
TTGGGTTTATGACCAGCAAT+CGG + chr8_1:47210625-47210644 Msa1197050:intron 40.0%
ACAGACACTAGACACGGATA+TGG - chr8_1:47207834-47207853 None:intergenic 45.0%
TCAGACACAGACACTAGACA+CGG - chr8_1:47207840-47207859 None:intergenic 45.0%
ACCAAGATGGCTTATCCATG+AGG + chr8_1:47208232-47208251 Msa1197050:CDS 45.0%
ACCTCATGGATAAGCCATCT+TGG - chr8_1:47208236-47208255 None:intergenic 45.0%
! CCTAGCATTGAAGGACACTT+CGG + chr8_1:47208609-47208628 Msa1197050:CDS 45.0%
!! TGTAGTTCTAGCGTCCATTG+TGG + chr8_1:47208756-47208775 Msa1197050:CDS 45.0%
TTGTCACAGAGAGGAATAGG+AGG + chr8_1:47208847-47208866 Msa1197050:CDS 45.0%
GTGGTGGTCCAATGTAATTC+TGG - chr8_1:47209011-47209030 None:intergenic 45.0%
GGACAGAGTAGCAATTCTTG+AGG + chr8_1:47209151-47209170 Msa1197050:CDS 45.0%
!! GGTCAAGGCTTTAGATGTTG+AGG + chr8_1:47209229-47209248 Msa1197050:CDS 45.0%
CTTTAGATGTTGAGGACCGT+GGG + chr8_1:47209237-47209256 Msa1197050:CDS 45.0%
TTTGTAGTGTGCTCTTCCCA+CGG - chr8_1:47209256-47209275 None:intergenic 45.0%
CTTTGATTAAGATCGGTGGG+AGG - chr8_1:47209326-47209345 None:intergenic 45.0%
CTCCATTTGCGTCTTTCTAG+TGG - chr8_1:47209360-47209379 None:intergenic 45.0%
CACTAGAAAGACGCAAATGG+AGG + chr8_1:47209358-47209377 Msa1197050:CDS 45.0%
!! GTGAAAAGTGTGGTTTGGTG+TGG - chr8_1:47209754-47209773 None:intergenic 45.0%
! CTTTGGAAGGAAGGTACAAG+TGG - chr8_1:47209811-47209830 None:intergenic 45.0%
GTAAGGAAATAGCCGATTGC+TGG - chr8_1:47210640-47210659 None:intergenic 45.0%
ATCAGGACACGTCTAATCCG+AGG - chr8_1:47207776-47207795 None:intergenic 50.0%
! TGGTTGGGTTGTTGCTGTTG+TGG + chr8_1:47207923-47207942 Msa1197050:CDS 50.0%
! TTGGGTTGTTGCTGTTGTGG+TGG + chr8_1:47207926-47207945 Msa1197050:CDS 50.0%
GTGATATCGCTACCTCTGCA+TGG - chr8_1:47208208-47208227 None:intergenic 50.0%
! CCGAAGTGTCCTTCAATGCT+AGG - chr8_1:47208612-47208631 None:intergenic 50.0%
TCTAGCGTCCATTGTGGCAA+TGG + chr8_1:47208762-47208781 Msa1197050:CDS 50.0%
! GCTTTAGATGTTGAGGACCG+TGG + chr8_1:47209236-47209255 Msa1197050:CDS 50.0%
GATTAAGATCGGTGGGAGGT+AGG - chr8_1:47209322-47209341 None:intergenic 50.0%
AATATCCTGCGCAGTTGCCT+GGG - chr8_1:47210404-47210423 None:intergenic 50.0%
TGTCTGAGTCTGTGCTGCAC+AGG + chr8_1:47207853-47207872 Msa1197050:intron 55.0%
GATCTACAGCGTCCATGCAG+AGG + chr8_1:47208193-47208212 Msa1197050:intron 55.0%
CTTCCTCGCCATTGCCACAA+TGG - chr8_1:47208773-47208792 None:intergenic 55.0%
ATCGGTGGGAGGTAGGTTTC+TGG - chr8_1:47209315-47209334 None:intergenic 55.0%
CTGTGCTGTGAGCAGAAGCA+TGG + chr8_1:47209547-47209566 Msa1197050:CDS 55.0%
GAATATCCTGCGCAGTTGCC+TGG - chr8_1:47210405-47210424 None:intergenic 55.0%
CGTCCATTGTGGCAATGGCG+AGG + chr8_1:47208767-47208786 Msa1197050:CDS 60.0%
TTTGTCCCAGGCAACTGCGC+AGG + chr8_1:47210396-47210415 Msa1197050:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 47207629 47210740 47207629 ID=Msa1197050;Name=Msa1197050
chr8_1 mRNA 47207629 47210740 47207629 ID=Msa1197050-mRNA-1;Parent=Msa1197050;Name=Msa1197050-mRNA-1;_AED=0.20;_eAED=0.22;_QI=0|0|0|0.77|1|1|9|0|460
chr8_1 exon 47207629 47207717 47207629 ID=Msa1197050-mRNA-1:exon:14952;Parent=Msa1197050-mRNA-1
chr8_1 exon 47207913 47208098 47207913 ID=Msa1197050-mRNA-1:exon:14953;Parent=Msa1197050-mRNA-1
chr8_1 exon 47208202 47208253 47208202 ID=Msa1197050-mRNA-1:exon:14954;Parent=Msa1197050-mRNA-1
chr8_1 exon 47208347 47208415 47208347 ID=Msa1197050-mRNA-1:exon:14955;Parent=Msa1197050-mRNA-1
chr8_1 exon 47208507 47208926 47208507 ID=Msa1197050-mRNA-1:exon:14956;Parent=Msa1197050-mRNA-1
chr8_1 exon 47209149 47209379 47209149 ID=Msa1197050-mRNA-1:exon:14957;Parent=Msa1197050-mRNA-1
chr8_1 exon 47209499 47209675 47209499 ID=Msa1197050-mRNA-1:exon:14958;Parent=Msa1197050-mRNA-1
chr8_1 exon 47210406 47210464 47210406 ID=Msa1197050-mRNA-1:exon:14959;Parent=Msa1197050-mRNA-1
chr8_1 exon 47210641 47210740 47210641 ID=Msa1197050-mRNA-1:exon:14960;Parent=Msa1197050-mRNA-1
chr8_1 CDS 47207629 47207717 47207629 ID=Msa1197050-mRNA-1:cds;Parent=Msa1197050-mRNA-1
chr8_1 CDS 47207913 47208098 47207913 ID=Msa1197050-mRNA-1:cds;Parent=Msa1197050-mRNA-1
chr8_1 CDS 47208202 47208253 47208202 ID=Msa1197050-mRNA-1:cds;Parent=Msa1197050-mRNA-1
chr8_1 CDS 47208347 47208415 47208347 ID=Msa1197050-mRNA-1:cds;Parent=Msa1197050-mRNA-1
chr8_1 CDS 47208507 47208926 47208507 ID=Msa1197050-mRNA-1:cds;Parent=Msa1197050-mRNA-1
chr8_1 CDS 47209149 47209379 47209149 ID=Msa1197050-mRNA-1:cds;Parent=Msa1197050-mRNA-1
chr8_1 CDS 47209499 47209675 47209499 ID=Msa1197050-mRNA-1:cds;Parent=Msa1197050-mRNA-1
chr8_1 CDS 47210406 47210464 47210406 ID=Msa1197050-mRNA-1:cds;Parent=Msa1197050-mRNA-1
chr8_1 CDS 47210641 47210740 47210641 ID=Msa1197050-mRNA-1:cds;Parent=Msa1197050-mRNA-1
Gene Sequence

>Msa1197050

ATGGGTGTTGTTGAATTTCTTAGACCCTTTGTTGAGACTAAAGCTTGGGATTATGTTGTTGTTTGGAAATATGGAAATGATCCAACAAGGTTTATTGAGTGGTTGGGTTGTTGCTGTTGTGGTGGAAATATTGAGAAGGTGAAGTTGAAAGAGGAAACTTGTGAAGAAAATAATTTGGCTTCCATTTGTAGGGATACCCTTTTTCATCATCCAGTCAGAACAAAGACTTGTGAGGCTCTTGCCAAGCTTCCTTTTACAATGTCTCTTTATTCTAGCGTCCATGCAGAGGTAGCGATATCACAACAACCAAGATGGCTTATCCATGAGGACTTAGTTGGAACTCAAGTTTTAATCCCTATTATTGGTGGTCTTGTTGAGCTTTTCACTGCAAAGCATATCCCAGAAGATATAAATACCATGAAGTTCATATCAGCACACTGTTGTGTCTCTATAAAGCAAGAAGCGATAGCACATAGCTACACTAACATGAACTGCAATCCTAGCATTGAAGGACACTTCGGTGAATCTAATCCTTCGACTGAGCACTTATCATTTGATTCAAACTATGGTTGCTTGATTCCTCATGAATATTTGAATCAACCACTTAAAAGCCACAAACACAATAAAATTTCAGCGAAACGTCGGTGTAGTTCTAGCGTCCATTGTGGCAATGGCGAGGAAGACAAAGAAAATATTGTCAAGGAGCCTCAAGAGAAAGTGTATCATGCTAAAAATCTTGTCACAGAGAGGAATAGGAGGAACAGAATAAAACAAGGGCTTTTTACTCTAAGGTCTCTAGTCCCGAATATAACCAAGATGGACAGAGTAGCAATTCTTGAGGATGCGATTGAATATATAATGGAATTGCAGAGGCAAGAGAAAGAATTTCAAGAAGAGGTCAAGGCTTTAGATGTTGAGGACCGTGGGAAGAGCACACTACAAATAAGAGTTCAAAAAGACAAAGAACTTGCAGAAGGAACCAGAAACCTACCTCCCACCGATCTTAATCAAAGTTCGTCCGATTCCACTAGAAAGACGCAAATGGAGTTGCAAGTAGAAGTGAATCATATCGCCGGAAAAGATTTCATGATTAAGCTGTGCTGTGAGCAGAAGCATGGTGTGTTTTCAAGGTTGATGGAAGCAATGGATTCATTTGGACTGCATGTGTTAAGTGCAAATATGACCACATTAGATGGCAAAGTTCTGAACATTCTTATGGTTGAGGCAACTGCGCAGGATATTCACCCGAAGAAAATCAGAGAGTATTTGATGCAGAAAACAAGCAATCGGCTATTTCCTTACAATGATTATGCTACAAACAAAGCTTGTGAGCCTGCTAAAATTGCAAAAAGACGCCAAACTAAAAAATGTGGCAGAATTTAG

Protein sequence

>Msa1197050

MGVVEFLRPFVETKAWDYVVVWKYGNDPTRFIEWLGCCCCGGNIEKVKLKEETCEENNLASICRDTLFHHPVRTKTCEALAKLPFTMSLYSSVHAEVAISQQPRWLIHEDLVGTQVLIPIIGGLVELFTAKHIPEDINTMKFISAHCCVSIKQEAIAHSYTNMNCNPSIEGHFGESNPSTEHLSFDSNYGCLIPHEYLNQPLKSHKHNKISAKRRCSSSVHCGNGEEDKENIVKEPQEKVYHAKNLVTERNRRNRIKQGLFTLRSLVPNITKMDRVAILEDAIEYIMELQRQEKEFQEEVKALDVEDRGKSTLQIRVQKDKELAEGTRNLPPTDLNQSSSDSTRKTQMELQVEVNHIAGKDFMIKLCCEQKHGVFSRLMEAMDSFGLHVLSANMTTLDGKVLNILMVEATAQDIHPKKIREYLMQKTSNRLFPYNDYATNKACEPAKIAKRRQTKKCGRI*