AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1197830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1197830 MtrunA17_Chr8g0366921 87.423 326 35 1 1 326 1 320 1.04e-140 406
Msa1197830 MtrunA17_Chr6g0470151 42.105 380 179 6 1 367 1 352 1.61e-59 199
Msa1197830 MtrunA17_Chr8g0368721 49.541 327 149 4 1 326 1 312 4.97e-48 167
Msa1197830 MtrunA17_Chr2g0289181 56.923 130 56 0 332 461 1 130 4.79e-47 162
Msa1197830 MtrunA17_Chr7g0266621 41.411 326 153 6 1 318 1 296 3.23e-35 132
Msa1197830 MtrunA17_Chr2g0293901 49.457 184 78 2 1 184 1 169 1.68e-32 122
Msa1197830 MtrunA17_Chr1g0202461 48.980 98 49 1 323 420 239 335 1.93e-27 113
Msa1197830 MtrunA17_Chr8g0348311 50.538 93 45 1 326 418 136 227 3.28e-24 103
Msa1197830 MtrunA17_Chr7g0248691 49.462 93 46 1 326 418 135 226 1.65e-23 100
Msa1197830 MtrunA17_Chr8g0387501 61.111 72 27 1 346 417 130 200 1.15e-22 97.4
Msa1197830 MtrunA17_Chr7g0270051 44.860 107 54 1 304 405 7 113 1.16e-20 91.7
Msa1197830 MtrunA17_Chr4g0053281 45.263 95 51 1 319 413 241 334 4.12e-19 88.2
Msa1197830 MtrunA17_Chr5g0401821 45.361 97 47 2 306 402 166 256 1.02e-18 85.9
Msa1197830 MtrunA17_Chr4g0071521 49.398 83 41 1 320 402 221 302 1.45e-18 86.3
Msa1197830 MtrunA17_Chr2g0293481 51.316 76 36 1 346 421 268 342 1.92e-18 87.8
Msa1197830 MtrunA17_Chr1g0184691 50.000 90 40 2 322 407 271 359 3.81e-18 85.9
Msa1197830 MtrunA17_Chr2g0284321 56.667 60 26 0 346 405 36 95 2.71e-17 80.5
Msa1197830 MtrunA17_Chr7g0249311 47.191 89 45 2 335 423 169 255 4.17e-17 84.0
Msa1197830 MtrunA17_Chr7g0249311 44.048 84 45 2 334 416 380 462 5.73e-14 74.3
Msa1197830 MtrunA17_Chr8g0379461 52.381 63 30 0 346 408 77 139 4.20e-17 80.9
Msa1197830 MtrunA17_Chr7g0263531 42.857 112 62 2 330 441 174 283 5.17e-17 83.2
Msa1197830 MtrunA17_Chr7g0263531 38.384 99 44 3 325 408 327 423 1.24e-13 72.8
Msa1197830 MtrunA17_Chr1g0147881 43.878 98 51 2 320 414 238 334 5.35e-17 82.0
Msa1197830 MtrunA17_Chr2g0319961 58.333 60 25 0 346 405 81 140 7.31e-17 80.5
Msa1197830 MtrunA17_Chr3g0139021 50.000 82 36 2 325 402 291 371 9.44e-17 82.0
Msa1197830 MtrunA17_Chr7g0249301 44.944 89 47 2 335 423 52 138 2.50e-16 80.5
Msa1197830 MtrunA17_Chr7g0249301 48.438 64 32 1 343 406 290 352 7.86e-13 69.7
Msa1197830 MtrunA17_Chr7g0228941 44.578 83 45 1 331 413 39 120 2.76e-16 75.1
Msa1197830 MtrunA17_Chr3g0079691 42.857 112 56 5 304 415 245 348 5.82e-16 80.5
Msa1197830 MtrunA17_Chr3g0079691 50.000 66 28 3 343 406 493 555 1.10e-12 70.5
Msa1197830 MtrunA17_Chr7g0218081 52.941 68 30 2 341 408 224 289 6.72e-16 80.1
Msa1197830 MtrunA17_Chr7g0218081 53.226 62 28 1 345 406 410 470 1.48e-14 75.9
Msa1197830 MtrunA17_Chr7g0243891 52.778 72 32 2 337 408 208 277 1.86e-15 78.6
Msa1197830 MtrunA17_Chr7g0243891 43.529 85 43 3 343 425 372 453 5.90e-12 67.8
Msa1197830 MtrunA17_Chr3g0101131 52.941 68 30 2 338 405 236 301 7.67e-15 77.0
Msa1197830 MtrunA17_Chr3g0101131 44.928 69 37 1 343 411 413 480 1.78e-12 69.3
Msa1197830 MtrunA17_Chr5g0443131 53.226 62 28 1 345 406 157 217 1.14e-14 74.7
Msa1197830 MtrunA17_Chr4g0042831 47.436 78 35 2 345 422 278 349 1.33e-14 75.5
Msa1197830 MtrunA17_Chr4g0042831 44.286 70 38 1 336 405 136 204 5.86e-13 70.5
Msa1197830 MtrunA17_Chr7g0270191 32.237 152 84 5 312 447 114 262 3.31e-14 73.2
Msa1197830 MtrunA17_Chr5g0447701 45.588 68 35 2 341 408 88 153 5.56e-14 73.6
Msa1197830 MtrunA17_Chr1g0194481 38.889 90 53 2 325 414 139 226 9.85e-14 72.0
Msa1197830 MtrunA17_Chr3g0106491 47.436 78 34 3 331 408 189 259 1.32e-13 72.8
Msa1197830 MtrunA17_Chr3g0106491 48.485 66 29 3 343 406 363 425 3.29e-11 65.5
Msa1197830 MtrunA17_Chr5g0418191 49.254 67 33 1 345 411 320 385 1.40e-13 72.4
Msa1197830 MtrunA17_Chr5g0418191 48.684 76 37 2 336 411 142 215 4.61e-13 70.9
Msa1197830 MtrunA17_Chr3g0129321 42.647 68 38 1 342 409 115 181 2.49e-13 68.9
Msa1197830 MtrunA17_Chr4g0074001 49.206 63 31 1 343 405 357 418 2.71e-13 72.0
Msa1197830 MtrunA17_Chr4g0068541 42.667 75 41 2 331 405 195 267 3.67e-13 71.2
Msa1197830 MtrunA17_Chr5g0432161 50.000 64 30 2 342 405 241 302 5.47e-13 71.2
Msa1197830 MtrunA17_Chr5g0432161 51.515 66 27 3 343 406 419 481 1.55e-12 69.7
Msa1197830 MtrunA17_Chr5g0445311 53.226 62 27 2 344 405 199 258 6.67e-13 70.9
Msa1197830 MtrunA17_Chr5g0445311 46.875 64 33 1 343 406 362 424 1.17e-12 70.1
Msa1197830 MtrunA17_Chr7g0266611 53.846 65 30 0 400 464 2 66 7.81e-13 66.6
Msa1197830 MtrunA17_Chr4g0004911 44.156 77 42 1 329 405 168 243 8.36e-13 70.5
Msa1197830 MtrunA17_Chr4g0004911 50.769 65 27 3 343 405 334 395 2.38e-12 68.9
Msa1197830 MtrunA17_Chr5g0418781 40.230 87 50 2 316 402 96 180 2.14e-12 67.4
Msa1197830 MtrunA17_Chr2g0294231 48.387 62 31 1 345 406 203 263 2.49e-12 68.2
Msa1197830 MtrunA17_Chr8g0335811 44.928 69 36 2 343 411 152 218 2.69e-12 66.2
Msa1197830 MtrunA17_Chr4g0001361 41.975 81 46 1 343 423 160 239 2.83e-12 67.8
Msa1197830 MtrunA17_Chr7g0238921 44.737 76 41 1 327 402 106 180 2.91e-12 67.4
Msa1197830 MtrunA17_Chr2g0302391 45.000 60 33 0 346 405 212 271 3.20e-12 68.2
Msa1197830 MtrunA17_Chr4g0051881 49.180 61 30 1 345 405 178 237 3.34e-12 67.4
Msa1197830 MtrunA17_Chr3g0136961 46.552 58 31 0 345 402 138 195 5.58e-12 66.6
Msa1197830 MtrunA17_Chr2g0333851 45.312 64 35 0 343 406 167 230 5.89e-12 66.6
Msa1197830 MtrunA17_Chr3g0099641 38.667 75 45 1 331 405 238 311 7.16e-12 67.4
Msa1197830 MtrunA17_Chr8g0387981 48.276 58 28 1 345 400 132 189 9.17e-12 66.2
Msa1197830 MtrunA17_Chr3g0126391 46.552 58 29 1 345 400 133 190 1.20e-11 65.9
Msa1197830 MtrunA17_Chr8g0383251 35.955 89 53 3 320 405 80 167 1.78e-11 63.2
Msa1197830 MtrunA17_Chr1g0150271 47.619 63 33 0 343 405 99 161 1.93e-11 64.3
Msa1197830 MtrunA17_Chr8g0386241 36.471 85 48 3 343 425 101 181 2.61e-11 62.4
Msa1197830 MtrunA17_Chr8g0383351 42.424 66 36 2 343 408 158 221 2.73e-11 63.5
Msa1197830 MtrunA17_Chr3g0128671 35.345 116 55 4 314 416 103 211 3.62e-11 64.3
Msa1197830 MtrunA17_Chr7g0224801 38.356 73 42 2 343 413 91 162 3.72e-11 61.6
Msa1197830 MtrunA17_Chr1g0150281 49.123 57 29 0 346 402 141 197 3.91e-11 63.9
Msa1197830 MtrunA17_Chr7g0270831 40.000 75 44 1 331 405 203 276 8.17e-11 63.9
Msa1197830 MtrunA17_Chr3g0129361 43.077 65 35 2 343 407 142 204 8.35e-11 61.6
Msa1197830 MtrunA17_Chr7g0248721 36.667 90 53 3 315 402 109 196 9.17e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1197830 AT4G01250.1 38.994 159 80 5 264 422 63 204 2.72e-27 111
Msa1197830 AT5G52830.1 47.959 98 50 1 323 420 143 239 8.44e-25 105
Msa1197830 AT4G23550.1 49.462 93 46 1 329 421 124 215 4.46e-23 99.8
Msa1197830 AT5G45050.1 43.299 97 55 0 309 405 1144 1240 4.83e-20 94.4
Msa1197830 AT5G45050.4 43.299 97 55 0 309 405 1005 1101 5.01e-20 94.0
Msa1197830 AT5G45050.2 43.299 97 55 0 309 405 1116 1212 5.20e-20 94.0
Msa1197830 AT4G31550.2 48.315 89 43 1 325 410 222 310 4.01e-19 88.6
Msa1197830 AT2G24570.1 48.889 90 45 1 313 402 212 300 7.82e-19 87.8
Msa1197830 AT4G31550.1 46.739 92 48 1 319 410 221 311 7.85e-19 87.8
Msa1197830 AT4G24240.1 50.602 83 40 1 320 402 257 338 3.74e-18 86.3
Msa1197830 AT2G23320.1 47.191 89 37 3 317 402 216 297 7.19e-18 84.7
Msa1197830 AT5G28650.1 42.718 103 56 1 305 404 219 321 9.92e-18 84.7
Msa1197830 AT2G34830.1 44.578 83 45 1 332 414 202 283 1.38e-17 85.1
Msa1197830 AT2G34830.2 44.578 83 45 1 332 414 211 292 1.54e-17 85.1
Msa1197830 AT3G04670.1 49.412 85 42 1 320 404 238 321 3.19e-17 83.2
Msa1197830 AT1G29280.1 56.667 60 26 0 346 405 75 134 5.58e-17 81.3
Msa1197830 AT1G30650.1 44.578 83 45 1 332 414 204 285 5.87e-17 83.2
Msa1197830 AT3G01080.3 40.404 99 54 3 341 439 201 294 7.96e-17 81.6
Msa1197830 AT3G58710.2 52.308 65 31 0 346 410 71 135 1.72e-16 79.7
Msa1197830 AT3G58710.1 52.308 65 31 0 346 410 72 136 1.73e-16 80.1
Msa1197830 AT3G01080.1 40.816 98 53 3 341 438 163 255 2.50e-16 81.3
Msa1197830 AT3G01080.1 52.459 61 28 1 345 405 306 365 4.94e-14 74.3
Msa1197830 AT3G01080.2 40.816 98 53 3 341 438 201 293 3.09e-16 81.3
Msa1197830 AT3G01080.2 52.459 61 28 1 345 405 344 403 4.59e-14 74.7
Msa1197830 AT2G30590.1 45.783 83 42 1 325 404 290 372 3.79e-16 80.5
Msa1197830 AT5G07100.1 37.931 116 65 3 338 447 110 224 3.97e-16 79.3
Msa1197830 AT5G07100.1 47.619 63 32 1 343 405 232 293 2.99e-12 67.8
Msa1197830 AT5G07100.2 42.857 91 48 2 340 427 19 108 7.16e-16 77.0
Msa1197830 AT5G07100.2 47.619 63 32 1 343 405 139 200 4.35e-12 65.9
Msa1197830 AT5G07100.4 42.857 91 48 2 340 427 19 108 7.16e-16 77.0
Msa1197830 AT5G07100.4 47.619 63 32 1 343 405 139 200 4.35e-12 65.9
Msa1197830 AT5G07100.5 42.857 91 48 2 340 427 19 108 7.16e-16 77.0
Msa1197830 AT5G07100.5 47.619 63 32 1 343 405 139 200 4.35e-12 65.9
Msa1197830 AT5G07100.3 42.857 91 48 2 340 427 19 108 7.16e-16 77.0
Msa1197830 AT5G07100.3 47.619 63 32 1 343 405 139 200 4.35e-12 65.9
Msa1197830 AT4G26440.1 52.055 73 33 2 344 416 177 247 1.88e-15 79.3
Msa1197830 AT4G26440.1 32.168 143 77 4 276 416 318 442 3.25e-13 72.0
Msa1197830 AT2G38470.1 45.652 92 45 4 315 405 155 242 5.11e-15 77.8
Msa1197830 AT2G38470.1 48.438 64 32 1 343 406 360 422 1.55e-12 70.1
Msa1197830 AT2G30250.1 38.281 128 59 6 295 405 100 224 1.91e-14 75.5
Msa1197830 AT2G30250.1 51.667 60 28 1 346 405 329 387 3.02e-12 68.6
Msa1197830 AT2G03340.1 51.613 62 29 1 345 406 415 475 4.19e-14 74.7
Msa1197830 AT2G03340.1 36.607 112 64 4 303 410 205 313 6.76e-14 74.3
Msa1197830 AT5G56270.1 52.941 68 30 2 344 411 272 337 5.22e-14 74.7
Msa1197830 AT5G56270.1 50.000 66 28 3 343 406 485 547 2.52e-12 69.7
Msa1197830 AT5G41570.1 37.209 86 51 2 319 402 70 154 1.09e-13 69.7
Msa1197830 AT2G37260.1 50.746 67 31 2 340 406 160 224 1.25e-13 73.2
Msa1197830 AT2G37260.1 42.683 82 41 3 325 402 326 405 2.22e-13 72.4
Msa1197830 AT1G13960.1 40.230 87 45 3 326 407 205 289 1.26e-13 73.2
Msa1197830 AT1G13960.1 49.180 61 30 1 345 405 409 468 8.93e-13 70.9
Msa1197830 AT2G37260.3 50.746 67 31 2 340 406 80 144 1.42e-13 72.4
Msa1197830 AT2G37260.3 42.683 82 41 3 325 402 246 325 2.62e-13 71.6
Msa1197830 AT2G37260.2 50.746 67 31 2 340 406 78 142 1.44e-13 72.4
Msa1197830 AT2G37260.2 42.683 82 41 3 325 402 244 323 2.83e-13 71.2
Msa1197830 AT2G21900.1 40.860 93 50 3 318 406 78 169 1.52e-13 69.7
Msa1197830 AT1G13960.2 49.254 67 32 2 341 407 72 136 1.90e-13 72.0
Msa1197830 AT1G13960.2 49.180 61 30 1 345 405 256 315 1.17e-12 69.7
Msa1197830 AT1G64000.1 38.750 80 48 1 323 402 92 170 2.50e-13 68.9
Msa1197830 AT4G18170.1 33.333 126 76 3 282 407 116 233 2.92e-13 70.9
Msa1197830 AT1G55600.1 51.667 60 28 1 346 405 308 366 4.88e-13 71.2
Msa1197830 AT1G69310.4 39.773 88 51 2 316 403 119 204 6.27e-13 69.7
Msa1197830 AT1G69310.2 39.773 88 51 2 316 403 119 204 6.27e-13 69.7
Msa1197830 AT1G69310.1 39.773 88 51 2 316 403 119 204 6.27e-13 69.7
Msa1197830 AT2G04880.2 33.140 172 84 7 259 405 177 342 7.37e-13 70.9
Msa1197830 AT2G04880.2 46.154 65 33 2 341 405 107 169 3.31e-12 68.9
Msa1197830 AT2G04880.1 50.794 63 30 1 343 405 305 366 9.62e-13 70.5
Msa1197830 AT2G04880.1 46.154 65 33 2 341 405 107 169 3.15e-12 68.9
Msa1197830 AT2G46130.1 41.250 80 45 2 323 402 9 86 1.13e-12 64.7
Msa1197830 AT5G45260.1 34.266 143 81 6 285 422 1152 1286 2.09e-12 70.1
Msa1197830 AT4G26640.2 39.815 108 52 6 343 444 209 309 2.21e-12 69.7
Msa1197830 AT4G26640.2 44.444 63 34 1 343 405 379 440 2.12e-11 66.6
Msa1197830 AT2G44745.1 46.667 60 31 1 343 402 143 201 2.23e-12 66.6
Msa1197830 AT4G26640.5 49.206 63 30 2 343 405 33 93 2.24e-12 68.9
Msa1197830 AT4G26640.5 44.444 63 34 1 343 405 203 264 2.31e-11 65.9
Msa1197830 AT4G26640.6 49.206 63 30 2 343 405 33 93 2.24e-12 68.9
Msa1197830 AT4G26640.6 44.444 63 34 1 343 405 203 264 2.31e-11 65.9
Msa1197830 AT4G26640.4 49.206 63 30 2 343 405 33 93 2.24e-12 68.9
Msa1197830 AT4G26640.4 44.444 63 34 1 343 405 203 264 2.31e-11 65.9
Msa1197830 AT4G26640.3 49.206 63 30 2 343 405 33 93 2.24e-12 68.9
Msa1197830 AT4G26640.3 44.444 63 34 1 343 405 203 264 2.31e-11 65.9
Msa1197830 AT4G26640.7 39.815 108 52 6 343 444 169 269 2.31e-12 69.3
Msa1197830 AT4G26640.7 44.444 63 34 1 343 405 339 400 2.08e-11 66.2
Msa1197830 AT5G26170.1 45.902 61 32 1 342 402 110 169 2.64e-12 65.5
Msa1197830 AT1G80840.1 42.188 64 37 0 343 406 144 207 2.70e-12 67.8
Msa1197830 AT4G26640.1 49.206 63 30 2 343 405 137 197 2.82e-12 68.9
Msa1197830 AT4G26640.1 44.444 63 34 1 343 405 307 368 2.51e-11 66.2
Msa1197830 AT5G46350.1 41.558 77 43 2 331 407 170 244 2.83e-12 68.2
Msa1197830 AT1G29860.1 43.421 76 41 2 331 406 123 196 3.14e-12 67.4
Msa1197830 AT5G49520.1 47.541 61 31 1 345 405 221 280 3.64e-12 68.2
Msa1197830 AT2G47260.1 40.659 91 50 3 317 405 145 233 4.42e-12 67.8
Msa1197830 AT4G30935.1 46.032 63 33 1 343 405 329 390 8.16e-12 67.4
Msa1197830 AT3G01970.1 42.466 73 39 2 343 413 63 134 8.28e-12 63.5
Msa1197830 AT2G46400.1 39.362 94 52 3 312 400 68 161 1.07e-11 65.9
Msa1197830 AT1G66550.2 50.877 57 26 1 346 400 104 160 2.00e-11 64.7
Msa1197830 AT1G66550.1 50.877 57 26 1 346 400 109 165 2.27e-11 64.3
Msa1197830 AT4G31800.2 39.326 89 50 2 345 433 111 195 2.91e-11 63.9
Msa1197830 AT5G13080.1 35.802 81 49 2 343 421 65 144 4.50e-11 61.2
Msa1197830 AT1G80590.1 47.619 63 31 1 346 406 86 148 4.65e-11 63.2
Msa1197830 AT2G25000.2 44.262 61 34 0 345 405 103 163 5.92e-11 62.8
Msa1197830 AT2G25000.4 44.262 61 34 0 345 405 103 163 5.92e-11 62.8
Msa1197830 AT2G25000.3 37.349 83 47 1 328 405 103 185 7.11e-11 62.8
Msa1197830 AT4G31800.1 39.326 89 50 2 345 433 176 260 7.73e-11 63.5
Msa1197830 AT5G01900.1 50.000 60 28 1 343 400 108 167 8.17e-11 62.8
Msa1197830 AT5G43290.1 43.836 73 40 1 330 402 99 170 8.84e-11 63.2

Find 120 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAAAACAGACACTCGATTT+TGG 0.221712 8_1:-49015988 None:intergenic
CTGAATTTGATGACATATTC+CGG 0.271166 8_1:-49017543 None:intergenic
TGGGGTTCTTGTGGTTCTAA+TGG 0.273735 8_1:-49016067 None:intergenic
TGGATGTGGAGACCCTTTAA+TGG 0.287579 8_1:-49016408 None:intergenic
TTTGGTTTAAGTGGTGATAT+TGG 0.288348 8_1:-49015416 None:intergenic
TGGCGTTGCAGTTTCATAAA+AGG 0.291854 8_1:-49015285 None:intergenic
TGGGGTGTTGATAGTGGTTG+TGG 0.299407 8_1:-49015831 None:intergenic
TAAAGTTGTAGAACTGGTTT+GGG 0.308186 8_1:-49016122 None:intergenic
CGGAATATGTCATCAAATTC+AGG 0.311348 8_1:+49017544 Msa1197830:CDS
GTAGTTGATTATGATTTCTC+TGG 0.321068 8_1:-49016087 None:intergenic
GATAGTGGTGGTAGTGATTG+AGG 0.323858 8_1:-49015525 None:intergenic
ATTTGCCTCATAGTTATTCA+TGG 0.325352 8_1:-49015897 None:intergenic
AAAGGTGGCAGGAGCATTAT+AGG 0.328381 8_1:-49015267 None:intergenic
GTATCAGTGGTGAATTGATT+AGG 0.336007 8_1:-49015602 None:intergenic
TCATGGAGATGGAGAAAATA+TGG 0.338703 8_1:+49016377 Msa1197830:CDS
TTGGTTTAAGTGGTGATATT+GGG 0.340936 8_1:-49015415 None:intergenic
ATAAGATTTCAGAAGATTCA+TGG 0.343013 8_1:+49016360 Msa1197830:CDS
GTAGAGTTCAGGATGAAAAT+TGG 0.347209 8_1:-49016041 None:intergenic
TGACAGTGGTAACGGTGGTT+GGG 0.348774 8_1:-49015850 None:intergenic
CTCTCATGGAAAATGATGAT+TGG 0.350540 8_1:+49015207 None:intergenic
TAGTTGTGATGGGATTAAAT+TGG 0.355518 8_1:-49015745 None:intergenic
ACGGAATTCCAATTATTTGC+TGG 0.359995 8_1:-49017508 None:intergenic
GGGGTGTTGATAGTGGTTGT+GGG 0.367850 8_1:-49015830 None:intergenic
GTGATTGTGTTGGTGGTGAT+TGG 0.368121 8_1:-49015314 None:intergenic
GTAAAGTTGTAGAACTGGTT+TGG 0.369929 8_1:-49016123 None:intergenic
CATGGTTGTGGTTGTGGTAG+TGG 0.373176 8_1:-49015879 None:intergenic
GGATGTGGAGACCCTTTAAT+GGG 0.385486 8_1:-49016407 None:intergenic
GGTGGTTGGGGTGTTGATAG+TGG 0.393146 8_1:-49015837 None:intergenic
AGCTGCAACATTACCGCATT+AGG 0.400572 8_1:-49017622 None:intergenic
ATTCAGTAAAGTTGTAGAAC+TGG 0.405398 8_1:-49016128 None:intergenic
CTCATAGTTATTCATGGTTG+TGG 0.413400 8_1:-49015891 None:intergenic
TTGAGCAACATCCAGCTTCT+CGG 0.415819 8_1:-49017579 None:intergenic
TCTAATGGATGGTAGAGTTC+AGG 0.417884 8_1:-49016052 None:intergenic
TTGCTCAAATGTTAGAAACT+TGG 0.419714 8_1:+49017594 Msa1197830:CDS
GTTATTCATGGTTGTGGTTG+TGG 0.422052 8_1:-49015885 None:intergenic
ATGAATAACTATGAGGCAAA+TGG 0.426471 8_1:+49015899 Msa1197830:CDS
TGAATTTGATGACATATTCC+GGG 0.430840 8_1:-49017542 None:intergenic
ATAGTGGTGGTAGTGATTGA+GGG 0.431068 8_1:-49015524 None:intergenic
TGCTCAAATGTTAGAAACTT+GGG 0.431950 8_1:+49017595 Msa1197830:CDS
GTTGTTGTTCAACGAGCATT+GGG 0.432884 8_1:-49015952 None:intergenic
TAGTTGATTATGATTTCTCT+GGG 0.432951 8_1:-49016086 None:intergenic
ATGAAGTCATTTGGTTTAAG+TGG 0.434572 8_1:-49015425 None:intergenic
TCTAGTTCGATGAAGTCATT+TGG 0.435609 8_1:-49015434 None:intergenic
ACTCGAGCCTTGCTGCTCTC+TGG 0.436121 8_1:-49017652 None:intergenic
TCTCATGGAAAATGATGATT+GGG 0.436690 8_1:+49015208 None:intergenic
GTTATTTGTGATTGTGTTGG+TGG 0.447385 8_1:-49015321 None:intergenic
TGTTGTTGTTCAACGAGCAT+TGG 0.450106 8_1:-49015953 None:intergenic
TTAGATGTTGTCCGAGAAGC+TGG 0.454965 8_1:+49017568 Msa1197830:CDS
GGGGTACTGGTACTAGGGTT+GGG 0.457173 8_1:-49015791 None:intergenic
ATTTATGAAGTGACATATCT+AGG 0.458715 8_1:+49017466 Msa1197830:CDS
ATCACTAACACTAGTTATCA+TGG 0.460184 8_1:+49015626 Msa1197830:CDS
GGTCAACGAGGTGGGGATAG+TGG 0.460565 8_1:-49015540 None:intergenic
ATTAGGGATGGCAATGGTCG+AGG 0.461375 8_1:-49015585 None:intergenic
GGCGGTGATAATTGTGGTAT+TGG 0.462287 8_1:-49015561 None:intergenic
GTTGGGATATCGCTTGTAGT+AGG 0.465743 8_1:-49015500 None:intergenic
ATGACAGTGGTAACGGTGGT+TGG 0.471017 8_1:-49015851 None:intergenic
GACAGTGGTAACGGTGGTTG+GGG 0.476030 8_1:-49015849 None:intergenic
TTGTGTTGGTGGTGATTGGT+AGG 0.483271 8_1:-49015310 None:intergenic
GGAGTAGTGATAGTGGAGAT+CGG 0.486295 8_1:-49015770 None:intergenic
AATGCTCGTTGAACAACAAC+AGG 0.486815 8_1:+49015955 Msa1197830:CDS
TTGGTGGTGATTGGTAGGAT+TGG 0.489952 8_1:-49015305 None:intergenic
GTTCTTGTGGTTCTAATGGA+TGG 0.491034 8_1:-49016063 None:intergenic
CTGGTTTGGGGTAGTAGAAT+CGG 0.494141 8_1:-49016109 None:intergenic
TGATTTCTCTGGGGTTCTTG+TGG 0.495150 8_1:-49016076 None:intergenic
AATAATTGGAATTCCGTTGT+TGG 0.498386 8_1:+49017514 Msa1197830:CDS
TATCAGTGGTGAATTGATTA+GGG 0.498936 8_1:-49015601 None:intergenic
ATATCGCTTGTAGTAGGGAT+AGG 0.499398 8_1:-49015494 None:intergenic
AGCAAGGCTCGAGTTCTTGA+TGG 0.505440 8_1:+49017661 Msa1197830:CDS
GGAGATCGGGATAGTTGTGA+TGG 0.506503 8_1:-49015756 None:intergenic
GTGGTATTGGTCAACGAGGT+GGG 0.509472 8_1:-49015548 None:intergenic
TTTCAGAAGATTCATGGAGA+TGG 0.509856 8_1:+49016366 Msa1197830:CDS
GAGTAGTGATAGTGGAGATC+GGG 0.510373 8_1:-49015769 None:intergenic
ATTCCGTTGTTGGTAGCTCC+CGG 0.520368 8_1:+49017524 Msa1197830:CDS
GCAGTTTCATAAAAGGTGGC+AGG 0.521840 8_1:-49015278 None:intergenic
AGGGATGGCAATGGTCGAGG+GGG 0.522986 8_1:-49015582 None:intergenic
GATGTTATTTGTGATTGTGT+TGG 0.523003 8_1:-49015324 None:intergenic
GGTGGTTGTAGTCTTAATGC+AGG 0.525304 8_1:-49016020 None:intergenic
TATCGCTTGTAGTAGGGATA+GGG 0.527079 8_1:-49015493 None:intergenic
TTAGGGATGGCAATGGTCGA+GGG 0.530363 8_1:-49015584 None:intergenic
TGTTGTTGTTCAATGAGTGT+TGG 0.532167 8_1:-49015680 None:intergenic
AAATAATAACCAAGTGACAT+TGG 0.536349 8_1:+49016319 Msa1197830:CDS
CATAGCTCACCAATGTCACT+TGG 0.536490 8_1:-49016328 None:intergenic
GGGTGTTGATAGTGGTTGTG+GGG 0.538558 8_1:-49015829 None:intergenic
ATTGGGAAATTAGAAACGGT+TGG 0.546933 8_1:-49015935 None:intergenic
TCTAACTCAGTGAACTCACT+TGG 0.548044 8_1:-49015710 None:intergenic
GAGCATTGGGAAATTAGAAA+CGG 0.548826 8_1:-49015939 None:intergenic
TTGGGATATCGCTTGTAGTA+GGG 0.553531 8_1:-49015499 None:intergenic
AGGGTTGGGAGTAGTGATAG+TGG 0.555742 8_1:-49015777 None:intergenic
GAGTTCAGGATGAAAATTGG+TGG 0.562740 8_1:-49016038 None:intergenic
CACAACCATGAATAACTATG+AGG 0.567159 8_1:+49015892 Msa1197830:CDS
GTTGTGGTTGTGGTAGTGGT+AGG 0.570383 8_1:-49015875 None:intergenic
GGTAGGAATGACAGTGGTAA+CGG 0.583862 8_1:-49015858 None:intergenic
TTAAAGGGTCTCCACATCCA+AGG 0.584498 8_1:+49016411 Msa1197830:CDS
CGTTGCAGTTTCATAAAAGG+TGG 0.586997 8_1:-49015282 None:intergenic
AGTGGTGAATTGATTAGGGA+TGG 0.590491 8_1:-49015597 None:intergenic
GAGATCGGGATAGTTGTGAT+GGG 0.597238 8_1:-49015755 None:intergenic
TAGGGATGGCAATGGTCGAG+GGG 0.602012 8_1:-49015583 None:intergenic
GGTGTTGATAGTGGTTGTGG+GGG 0.603398 8_1:-49015828 None:intergenic
ATGATAACTAGTGTTAGTGA+TGG 0.606015 8_1:-49015624 None:intergenic
TAGTGGTGGTAGTGATTGAG+GGG 0.614452 8_1:-49015523 None:intergenic
CAACGAGGTGGGGATAGTGG+TGG 0.618355 8_1:-49015537 None:intergenic
AATATGACGTGGTGTTGTGA+GGG 0.620814 8_1:-49015352 None:intergenic
TTGTTTAGCAAAGAAACTAG+TGG 0.621200 8_1:+49017420 Msa1197830:CDS
CAATATGACGTGGTGTTGTG+AGG 0.624759 8_1:-49015353 None:intergenic
TGTGGTATTGGTCAACGAGG+TGG 0.633309 8_1:-49015549 None:intergenic
ATTCCGGGAGCTACCAACAA+CGG 0.645979 8_1:-49017527 None:intergenic
TGGTATTGGTCAACGAGGTG+GGG 0.652088 8_1:-49015547 None:intergenic
AGTGGTGGTAGTGATTGAGG+GGG 0.657078 8_1:-49015522 None:intergenic
ATCATCAAAGCAATATGACG+TGG 0.680013 8_1:-49015363 None:intergenic
TGATCAGCCAGAGAGCAGCA+AGG 0.680979 8_1:+49017645 Msa1197830:CDS
AGTGTTAGTGATGGTATCAG+TGG 0.685752 8_1:-49015615 None:intergenic
AGTTGATTATGATTTCTCTG+GGG 0.705896 8_1:-49016085 None:intergenic
GACATTGGTGAGCTATGTGA+AGG 0.706817 8_1:+49016334 Msa1197830:CDS
ATATGACGTGGTGTTGTGAG+GGG 0.714347 8_1:-49015351 None:intergenic
AAAGTTGTAGAACTGGTTTG+GGG 0.727319 8_1:-49016121 None:intergenic
GGTGGCAGGAGCATTATAGG+TGG 0.729547 8_1:-49015264 None:intergenic
GAATTGATTAGGGATGGCAA+TGG 0.768917 8_1:-49015591 None:intergenic
GGTAGTGGTAGGAATGACAG+TGG 0.772669 8_1:-49015864 None:intergenic
AGGAATGACAGTGGTAACGG+TGG 0.786535 8_1:-49015855 None:intergenic
AATTGTGGTATTGGTCAACG+AGG 0.817467 8_1:-49015552 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAAAATTATATATTTTT+TGG + chr8_1:49017072-49017091 Msa1197830:intron 0.0%
!! GGAATAAAAATTAATATTAA+AGG - chr8_1:49016954-49016973 None:intergenic 10.0%
!!! TGTTTAAATTTTTGTTGTTT+CGG - chr8_1:49016160-49016179 None:intergenic 15.0%
!! AAACAACAAAAATTTAAACA+AGG + chr8_1:49016160-49016179 Msa1197830:CDS 15.0%
!! AAAAATTTAAACAAGGAAAA+AGG + chr8_1:49016167-49016186 Msa1197830:CDS 15.0%
!!! CAATATGAATAAATTTTGTA+GGG + chr8_1:49016973-49016992 Msa1197830:intron 15.0%
!! AAAAAATGATGTAAATGTAA+GGG - chr8_1:49017215-49017234 None:intergenic 15.0%
!! TAAAAAATGATGTAAATGTA+AGG - chr8_1:49017216-49017235 None:intergenic 15.0%
!!! TTTTTTCTACAAGAAAAGAA+GGG - chr8_1:49016302-49016321 None:intergenic 20.0%
!!! ATTTTTTCTACAAGAAAAGA+AGG - chr8_1:49016303-49016322 None:intergenic 20.0%
!! TTAGAATGAATAAAAAACCT+TGG - chr8_1:49016431-49016450 None:intergenic 20.0%
!! TAGTTAAATGTGACAAAATA+TGG + chr8_1:49016588-49016607 Msa1197830:intron 20.0%
!! CAAAAAATGATACATATACA+AGG - chr8_1:49016790-49016809 None:intergenic 20.0%
!! CCTACAAAATTTATTCATAT+TGG - chr8_1:49016975-49016994 None:intergenic 20.0%
!!! CCAATATGAATAAATTTTGT+AGG + chr8_1:49016972-49016991 Msa1197830:intron 20.0%
!! AAAAATGATGTAAATGTAAG+GGG - chr8_1:49017214-49017233 None:intergenic 20.0%
!! TCATATAGACACATATAAAT+AGG - chr8_1:49017302-49017321 None:intergenic 20.0%
! TAGTTGATTATGATTTCTCT+GGG - chr8_1:49016089-49016108 None:intergenic 25.0%
! AAATAATAACCAAGTGACAT+TGG + chr8_1:49016319-49016338 Msa1197830:CDS 25.0%
! ATAAGATTTCAGAAGATTCA+TGG + chr8_1:49016360-49016379 Msa1197830:CDS 25.0%
!!! CTAATTAAAACCATTGGTTT+GGG - chr8_1:49016528-49016547 None:intergenic 25.0%
!! ACTAATTAAAACCATTGGTT+TGG - chr8_1:49016529-49016548 None:intergenic 25.0%
! TCAAAAACAAAACATCAAAG+AGG - chr8_1:49016848-49016867 None:intergenic 25.0%
! ACAAACACTGAATAAAAATG+TGG + chr8_1:49017009-49017028 Msa1197830:intron 25.0%
! ATTTATGAAGTGACATATCT+AGG + chr8_1:49017466-49017485 Msa1197830:CDS 25.0%
! ACAAAAAACCAGCAAATAAT+TGG + chr8_1:49017500-49017519 Msa1197830:CDS 25.0%
! GATGTTATTTGTGATTGTGT+TGG - chr8_1:49015327-49015346 None:intergenic 30.0%
TTGGTTTAAGTGGTGATATT+GGG - chr8_1:49015418-49015437 None:intergenic 30.0%
! TTTGGTTTAAGTGGTGATAT+TGG - chr8_1:49015419-49015438 None:intergenic 30.0%
! ATGAAGTCATTTGGTTTAAG+TGG - chr8_1:49015428-49015447 None:intergenic 30.0%
! AGGGATAATTTTTGTAGGAT+TGG - chr8_1:49015477-49015496 None:intergenic 30.0%
TATCAGTGGTGAATTGATTA+GGG - chr8_1:49015604-49015623 None:intergenic 30.0%
ATGATAACTAGTGTTAGTGA+TGG - chr8_1:49015627-49015646 None:intergenic 30.0%
ATCACTAACACTAGTTATCA+TGG + chr8_1:49015626-49015645 Msa1197830:CDS 30.0%
! TAGTTGTGATGGGATTAAAT+TGG - chr8_1:49015748-49015767 None:intergenic 30.0%
ATTTGCCTCATAGTTATTCA+TGG - chr8_1:49015900-49015919 None:intergenic 30.0%
ATGAATAACTATGAGGCAAA+TGG + chr8_1:49015899-49015918 Msa1197830:CDS 30.0%
AGTTGATTATGATTTCTCTG+GGG - chr8_1:49016088-49016107 None:intergenic 30.0%
GTAGTTGATTATGATTTCTC+TGG - chr8_1:49016090-49016109 None:intergenic 30.0%
! TAAAGTTGTAGAACTGGTTT+GGG - chr8_1:49016125-49016144 None:intergenic 30.0%
ATTCAGTAAAGTTGTAGAAC+TGG - chr8_1:49016131-49016150 None:intergenic 30.0%
! AAGAAGGGTAAGATACTTTT+CGG - chr8_1:49016287-49016306 None:intergenic 30.0%
TATGGACAAAAACCCATTAA+AGG + chr8_1:49016395-49016414 Msa1197830:CDS 30.0%
ATGGACAAAAACCCATTAAA+GGG + chr8_1:49016396-49016415 Msa1197830:CDS 30.0%
TGAATAAAAAACCTTGGATG+TGG - chr8_1:49016425-49016444 None:intergenic 30.0%
TGGTCACTAATTAAAACCAT+TGG - chr8_1:49016534-49016553 None:intergenic 30.0%
AAGAAAGATCAAAATGCATG+TGG - chr8_1:49016554-49016573 None:intergenic 30.0%
AATATGGTCTATCTTGATAG+TGG + chr8_1:49016604-49016623 Msa1197830:intron 30.0%
ACCAAGCATTAAAGAACAAA+GGG - chr8_1:49016887-49016906 None:intergenic 30.0%
TACCAAGCATTAAAGAACAA+AGG - chr8_1:49016888-49016907 None:intergenic 30.0%
TGTAAATGTAAGGGGAAAAT+AGG - chr8_1:49017206-49017225 None:intergenic 30.0%
TTGTTTAGCAAAGAAACTAG+TGG + chr8_1:49017420-49017439 Msa1197830:CDS 30.0%
CTAGTGGAGAAAATAAAAAC+TGG + chr8_1:49017436-49017455 Msa1197830:CDS 30.0%
AATAATTGGAATTCCGTTGT+TGG + chr8_1:49017514-49017533 Msa1197830:CDS 30.0%
! TGAATTTGATGACATATTCC+GGG - chr8_1:49017545-49017564 None:intergenic 30.0%
! CTGAATTTGATGACATATTC+CGG - chr8_1:49017546-49017565 None:intergenic 30.0%
TTGCTCAAATGTTAGAAACT+TGG + chr8_1:49017594-49017613 Msa1197830:CDS 30.0%
TGCTCAAATGTTAGAAACTT+GGG + chr8_1:49017595-49017614 Msa1197830:CDS 30.0%
GTTATTTGTGATTGTGTTGG+TGG - chr8_1:49015324-49015343 None:intergenic 35.0%
ATCATCAAAGCAATATGACG+TGG - chr8_1:49015366-49015385 None:intergenic 35.0%
!!! TGGGATTGTGCTATTTTCTT+GGG - chr8_1:49015399-49015418 None:intergenic 35.0%
!!! TTGGGATTGTGCTATTTTCT+TGG - chr8_1:49015400-49015419 None:intergenic 35.0%
! TCTAGTTCGATGAAGTCATT+TGG - chr8_1:49015437-49015456 None:intergenic 35.0%
! GGGATAGGGATAATTTTTGT+AGG - chr8_1:49015482-49015501 None:intergenic 35.0%
GTATCAGTGGTGAATTGATT+AGG - chr8_1:49015605-49015624 None:intergenic 35.0%
! TGTTGTTGTTCAATGAGTGT+TGG - chr8_1:49015683-49015702 None:intergenic 35.0%
CTCATAGTTATTCATGGTTG+TGG - chr8_1:49015894-49015913 None:intergenic 35.0%
CACAACCATGAATAACTATG+AGG + chr8_1:49015892-49015911 Msa1197830:CDS 35.0%
ATTGGGAAATTAGAAACGGT+TGG - chr8_1:49015938-49015957 None:intergenic 35.0%
!! GAGCATTGGGAAATTAGAAA+CGG - chr8_1:49015942-49015961 None:intergenic 35.0%
GTAGAGTTCAGGATGAAAAT+TGG - chr8_1:49016044-49016063 None:intergenic 35.0%
!! AAAGTTGTAGAACTGGTTTG+GGG - chr8_1:49016124-49016143 None:intergenic 35.0%
GTAAAGTTGTAGAACTGGTT+TGG - chr8_1:49016126-49016145 None:intergenic 35.0%
TTTCAGAAGATTCATGGAGA+TGG + chr8_1:49016366-49016385 Msa1197830:CDS 35.0%
TCATGGAGATGGAGAAAATA+TGG + chr8_1:49016377-49016396 Msa1197830:CDS 35.0%
CAAGCATTAAAGAACAAAGG+GGG - chr8_1:49016885-49016904 None:intergenic 35.0%
CCAAGCATTAAAGAACAAAG+GGG - chr8_1:49016886-49016905 None:intergenic 35.0%
ATGTATTATTTCACGTGTCG+TGG + chr8_1:49017238-49017257 Msa1197830:intron 35.0%
TGTATTATTTCACGTGTCGT+GGG + chr8_1:49017239-49017258 Msa1197830:intron 35.0%
CAATCAATGAATGACTTTGC+AGG + chr8_1:49017368-49017387 Msa1197830:intron 35.0%
GGAGAAAATAAAAACTGGAG+AGG + chr8_1:49017441-49017460 Msa1197830:CDS 35.0%
ACGGAATTCCAATTATTTGC+TGG - chr8_1:49017511-49017530 None:intergenic 35.0%
CGGAATATGTCATCAAATTC+AGG + chr8_1:49017544-49017563 Msa1197830:CDS 35.0%
! AAACTTGGGTTTTCCTAATG+CGG + chr8_1:49017609-49017628 Msa1197830:CDS 35.0%
CGTTGCAGTTTCATAAAAGG+TGG - chr8_1:49015285-49015304 None:intergenic 40.0%
TGGCGTTGCAGTTTCATAAA+AGG - chr8_1:49015288-49015307 None:intergenic 40.0%
!! AATATGACGTGGTGTTGTGA+GGG - chr8_1:49015355-49015374 None:intergenic 40.0%
TATCGCTTGTAGTAGGGATA+GGG - chr8_1:49015496-49015515 None:intergenic 40.0%
ATATCGCTTGTAGTAGGGAT+AGG - chr8_1:49015497-49015516 None:intergenic 40.0%
TTGGGATATCGCTTGTAGTA+GGG - chr8_1:49015502-49015521 None:intergenic 40.0%
! ATAGTGGTGGTAGTGATTGA+GGG - chr8_1:49015527-49015546 None:intergenic 40.0%
!! AATTGTGGTATTGGTCAACG+AGG - chr8_1:49015555-49015574 None:intergenic 40.0%
GAATTGATTAGGGATGGCAA+TGG - chr8_1:49015594-49015613 None:intergenic 40.0%
AGTGGTGAATTGATTAGGGA+TGG - chr8_1:49015600-49015619 None:intergenic 40.0%
AGTGTTAGTGATGGTATCAG+TGG - chr8_1:49015618-49015637 None:intergenic 40.0%
TCTAACTCAGTGAACTCACT+TGG - chr8_1:49015713-49015732 None:intergenic 40.0%
GTTATTCATGGTTGTGGTTG+TGG - chr8_1:49015888-49015907 None:intergenic 40.0%
! GTTGTTGTTCAACGAGCATT+GGG - chr8_1:49015955-49015974 None:intergenic 40.0%
! TGTTGTTGTTCAACGAGCAT+TGG - chr8_1:49015956-49015975 None:intergenic 40.0%
AATGCTCGTTGAACAACAAC+AGG + chr8_1:49015955-49015974 Msa1197830:CDS 40.0%
! CGAAAACAGACACTCGATTT+TGG - chr8_1:49015991-49016010 None:intergenic 40.0%
GAGTTCAGGATGAAAATTGG+TGG - chr8_1:49016041-49016060 None:intergenic 40.0%
! TCTAATGGATGGTAGAGTTC+AGG - chr8_1:49016055-49016074 None:intergenic 40.0%
!! GTTCTTGTGGTTCTAATGGA+TGG - chr8_1:49016066-49016085 None:intergenic 40.0%
!! AAAACCATTGGTTTGGGTGT+GGG - chr8_1:49016522-49016541 None:intergenic 40.0%
!! TAAAACCATTGGTTTGGGTG+TGG - chr8_1:49016523-49016542 None:intergenic 40.0%
CCCCTTTGTTCTTTAATGCT+TGG + chr8_1:49016883-49016902 Msa1197830:intron 40.0%
!! AAAGGTGGCAGGAGCATTAT+AGG - chr8_1:49015270-49015289 None:intergenic 45.0%
GCAGTTTCATAAAAGGTGGC+AGG - chr8_1:49015281-49015300 None:intergenic 45.0%
!! TTGGTGGTGATTGGTAGGAT+TGG - chr8_1:49015308-49015327 None:intergenic 45.0%
!! TTGTGTTGGTGGTGATTGGT+AGG - chr8_1:49015313-49015332 None:intergenic 45.0%
!! GTGATTGTGTTGGTGGTGAT+TGG - chr8_1:49015317-49015336 None:intergenic 45.0%
!! ATATGACGTGGTGTTGTGAG+GGG - chr8_1:49015354-49015373 None:intergenic 45.0%
!! CAATATGACGTGGTGTTGTG+AGG - chr8_1:49015356-49015375 None:intergenic 45.0%
GTTGGGATATCGCTTGTAGT+AGG - chr8_1:49015503-49015522 None:intergenic 45.0%
! TAGTGGTGGTAGTGATTGAG+GGG - chr8_1:49015526-49015545 None:intergenic 45.0%
! GATAGTGGTGGTAGTGATTG+AGG - chr8_1:49015528-49015547 None:intergenic 45.0%
GGCGGTGATAATTGTGGTAT+TGG - chr8_1:49015564-49015583 None:intergenic 45.0%
GAGATCGGGATAGTTGTGAT+GGG - chr8_1:49015758-49015777 None:intergenic 45.0%
!! GAGTAGTGATAGTGGAGATC+GGG - chr8_1:49015772-49015791 None:intergenic 45.0%
!! GGAGTAGTGATAGTGGAGAT+CGG - chr8_1:49015773-49015792 None:intergenic 45.0%
GGTAGGAATGACAGTGGTAA+CGG - chr8_1:49015861-49015880 None:intergenic 45.0%
! GGTGGTTGTAGTCTTAATGC+AGG - chr8_1:49016023-49016042 None:intergenic 45.0%
!! TGGGGTTCTTGTGGTTCTAA+TGG - chr8_1:49016070-49016089 None:intergenic 45.0%
!! TGATTTCTCTGGGGTTCTTG+TGG - chr8_1:49016079-49016098 None:intergenic 45.0%
!! CTGGTTTGGGGTAGTAGAAT+CGG - chr8_1:49016112-49016131 None:intergenic 45.0%
CATAGCTCACCAATGTCACT+TGG - chr8_1:49016331-49016350 None:intergenic 45.0%
GACATTGGTGAGCTATGTGA+AGG + chr8_1:49016334-49016353 Msa1197830:CDS 45.0%
GGATGTGGAGACCCTTTAAT+GGG - chr8_1:49016410-49016429 None:intergenic 45.0%
TGGATGTGGAGACCCTTTAA+TGG - chr8_1:49016411-49016430 None:intergenic 45.0%
TTAAAGGGTCTCCACATCCA+AGG + chr8_1:49016411-49016430 Msa1197830:CDS 45.0%
TTATTTCACGTGTCGTGGGA+CGG + chr8_1:49017243-49017262 Msa1197830:intron 45.0%
TTAGATGTTGTCCGAGAAGC+TGG + chr8_1:49017568-49017587 Msa1197830:CDS 45.0%
TTGAGCAACATCCAGCTTCT+CGG - chr8_1:49017582-49017601 None:intergenic 45.0%
AGCTGCAACATTACCGCATT+AGG - chr8_1:49017625-49017644 None:intergenic 45.0%
!! TATAAAATATATTAAATAGT+AGG - chr8_1:49016206-49016225 None:intergenic 5.0%
!!! ATTTTGTTTTATATTAAAAT+TGG + chr8_1:49016926-49016945 Msa1197830:intron 5.0%
! TGGTAGTGATTGAGGGGGTT+GGG - chr8_1:49015520-49015539 None:intergenic 50.0%
! AGTGGTGGTAGTGATTGAGG+GGG - chr8_1:49015525-49015544 None:intergenic 50.0%
!! TGGTATTGGTCAACGAGGTG+GGG - chr8_1:49015550-49015569 None:intergenic 50.0%
!! GTGGTATTGGTCAACGAGGT+GGG - chr8_1:49015551-49015570 None:intergenic 50.0%
!! TGTGGTATTGGTCAACGAGG+TGG - chr8_1:49015552-49015571 None:intergenic 50.0%
TTAGGGATGGCAATGGTCGA+GGG - chr8_1:49015587-49015606 None:intergenic 50.0%
ATTAGGGATGGCAATGGTCG+AGG - chr8_1:49015588-49015607 None:intergenic 50.0%
GGAGATCGGGATAGTTGTGA+TGG - chr8_1:49015759-49015778 None:intergenic 50.0%
AGGGTTGGGAGTAGTGATAG+TGG - chr8_1:49015780-49015799 None:intergenic 50.0%
!! TGATGGGGGTACTGGTACTA+GGG - chr8_1:49015799-49015818 None:intergenic 50.0%
!! GGTGTTGATAGTGGTTGTGG+GGG - chr8_1:49015831-49015850 None:intergenic 50.0%
!! GGGTGTTGATAGTGGTTGTG+GGG - chr8_1:49015832-49015851 None:intergenic 50.0%
!! GGGGTGTTGATAGTGGTTGT+GGG - chr8_1:49015833-49015852 None:intergenic 50.0%
!! TGGGGTGTTGATAGTGGTTG+TGG - chr8_1:49015834-49015853 None:intergenic 50.0%
!! TGACAGTGGTAACGGTGGTT+GGG - chr8_1:49015853-49015872 None:intergenic 50.0%
!! ATGACAGTGGTAACGGTGGT+TGG - chr8_1:49015854-49015873 None:intergenic 50.0%
!! AGGAATGACAGTGGTAACGG+TGG - chr8_1:49015858-49015877 None:intergenic 50.0%
! GGTAGTGGTAGGAATGACAG+TGG - chr8_1:49015867-49015886 None:intergenic 50.0%
!! GTTGTGGTTGTGGTAGTGGT+AGG - chr8_1:49015878-49015897 None:intergenic 50.0%
CATGGTTGTGGTTGTGGTAG+TGG - chr8_1:49015882-49015901 None:intergenic 50.0%
TGGGTGTGGGTGTGTGTATT+AGG - chr8_1:49016509-49016528 None:intergenic 50.0%
!! ATTCCGTTGTTGGTAGCTCC+CGG + chr8_1:49017524-49017543 Msa1197830:CDS 50.0%
ATTCCGGGAGCTACCAACAA+CGG - chr8_1:49017530-49017549 None:intergenic 50.0%
AGCAAGGCTCGAGTTCTTGA+TGG + chr8_1:49017661-49017680 Msa1197830:CDS 50.0%
!! GGTGGCAGGAGCATTATAGG+TGG - chr8_1:49015267-49015286 None:intergenic 55.0%
! GTGGTAGTGATTGAGGGGGT+TGG - chr8_1:49015521-49015540 None:intergenic 55.0%
TAGGGATGGCAATGGTCGAG+GGG - chr8_1:49015586-49015605 None:intergenic 55.0%
!! GGGGTACTGGTACTAGGGTT+GGG - chr8_1:49015794-49015813 None:intergenic 55.0%
!! GTGATGGGGGTACTGGTACT+AGG - chr8_1:49015800-49015819 None:intergenic 55.0%
!! AGTGAAGGTGATGGGGGTAC+TGG - chr8_1:49015807-49015826 None:intergenic 55.0%
TGGGGGTAGTGAAGGTGATG+GGG - chr8_1:49015814-49015833 None:intergenic 55.0%
GTGGGGGTAGTGAAGGTGAT+GGG - chr8_1:49015815-49015834 None:intergenic 55.0%
TGTGGGGGTAGTGAAGGTGA+TGG - chr8_1:49015816-49015835 None:intergenic 55.0%
AGTGGTTGTGGGGGTAGTGA+AGG - chr8_1:49015822-49015841 None:intergenic 55.0%
!! GGTGGTTGGGGTGTTGATAG+TGG - chr8_1:49015840-49015859 None:intergenic 55.0%
!! GACAGTGGTAACGGTGGTTG+GGG - chr8_1:49015852-49015871 None:intergenic 55.0%
CACACCCACACCCAAACCAA+TGG + chr8_1:49016515-49016534 Msa1197830:intron 55.0%
TGATCAGCCAGAGAGCAGCA+AGG + chr8_1:49017645-49017664 Msa1197830:CDS 55.0%
! CAACGAGGTGGGGATAGTGG+TGG - chr8_1:49015540-49015559 None:intergenic 60.0%
GGTCAACGAGGTGGGGATAG+TGG - chr8_1:49015543-49015562 None:intergenic 60.0%
CGAGGGGGCGGTGATAATTG+TGG - chr8_1:49015570-49015589 None:intergenic 60.0%
AGGGATGGCAATGGTCGAGG+GGG - chr8_1:49015585-49015604 None:intergenic 60.0%
!! GGGGGTACTGGTACTAGGGT+TGG - chr8_1:49015795-49015814 None:intergenic 60.0%
! GGGGGTAGTGAAGGTGATGG+GGG - chr8_1:49015813-49015832 None:intergenic 60.0%
ACTCGAGCCTTGCTGCTCTC+TGG - chr8_1:49017655-49017674 None:intergenic 60.0%
GATGGCAATGGTCGAGGGGG+CGG - chr8_1:49015582-49015601 None:intergenic 65.0%
CACGTGTCGTGGGACGGAGT+TGG + chr8_1:49017249-49017268 Msa1197830:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 49015212 49017690 49015212 ID=Msa1197830;Name=Msa1197830
chr8_1 mRNA 49015212 49017690 49015212 ID=Msa1197830-mRNA-1;Parent=Msa1197830;Name=Msa1197830-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|1|1|3|0|464
chr8_1 exon 49015212 49016188 49015212 ID=Msa1197830-mRNA-1:exon:15359;Parent=Msa1197830-mRNA-1
chr8_1 exon 49016316 49016432 49016316 ID=Msa1197830-mRNA-1:exon:15360;Parent=Msa1197830-mRNA-1
chr8_1 exon 49017390 49017690 49017390 ID=Msa1197830-mRNA-1:exon:15361;Parent=Msa1197830-mRNA-1
chr8_1 CDS 49015212 49016188 49015212 ID=Msa1197830-mRNA-1:cds;Parent=Msa1197830-mRNA-1
chr8_1 CDS 49016316 49016432 49016316 ID=Msa1197830-mRNA-1:cds;Parent=Msa1197830-mRNA-1
chr8_1 CDS 49017390 49017690 49017390 ID=Msa1197830-mRNA-1:cds;Parent=Msa1197830-mRNA-1
Gene Sequence

>Msa1197830

ATGGAAAATGATGATTGGGATCTCTTTTCTATTGTGCGTAGCTGCAAAGCTACCACCTATAATGCTCCTGCCACCTTTTATGAAACTGCAACGCCAATCCTACCAATCACCACCAACACAATCACAAATAACATCACATCCCCTCACAACACCACGTCATATTGCTTTGATGATTTTACACTTACCCAAGAAAATAGCACAATCCCAATATCACCACTTAAACCAAATGACTTCATCGAACTAGACAAATTGATCATTTGTTCCAATCCTACAAAAATTATCCCTATCCCTACTACAAGCGATATCCCAACCCCCTCAATCACTACCACCACTATCCCCACCTCGTTGACCAATACCACAATTATCACCGCCCCCTCGACCATTGCCATCCCTAATCAATTCACCACTGATACCATCACTAACACTAGTTATCATGGATCAGATCAAAATTCTACATTTTTTTATTTTCCAACACTCATTGAACAACAACAGATGCAACCAAGTGAGTTCACTGAGTTAGAAAAATGTATACTCCAATTTAATCCCATCACAACTATCCCGATCTCCACTATCACTACTCCCAACCCTAGTACCAGTACCCCCATCACCTTCACTACCCCCACAACCACTATCAACACCCCAACCACCGTTACCACTGTCATTCCTACCACTACCACAACCACAACCATGAATAACTATGAGGCAAATGGAATCAATCAATATCCAACCGTTTCTAATTTCCCAATGCTCGTTGAACAACAACAGGTTCAAGCAAACCAAAATCGAGTGTCTGTTTTCGACTCTATTTCCTGCATTAAGACTACAACCACCAATTTTCATCCTGAACTCTACCATCCATTAGAACCACAAGAACCCCAGAGAAATCATAATCAACTACCGATTCTACTACCCCAAACCAGTTCTACAACTTTACTGAATACAAAACCGAAACAACAAAAATTTAAACAAGGAAAAAGAAAAAATAATAACCAAGTGACATTGGTGAGCTATGTGAAGGCAGATAAGATTTCAGAAGATTCATGGAGATGGAGAAAATATGGACAAAAACCCATTAAAGGGTCTCCACATCCAAGGAGCTACTTCAAATGTAGCAGTTTCAATGATTGTTTAGCAAAGAAACTAGTGGAGAAAATAAAAACTGGAGAGGACATTTATGAAGTGACATATCTAGGAGAACACAATCACAAAAAACCAGCAAATAATTGGAATTCCGTTGTTGGTAGCTCCCGGAATATGTCATCAAATTCAGGATTAGATGTTGTCCGAGAAGCTGGATGTTGCTCAAATGTTAGAAACTTGGGTTTTCCTAATGCGGTAATGTTGCAGCTTGATCAGCCAGAGAGCAGCAAGGCTCGAGTTCTTGATGGTGAATAA
Protein sequence

>Msa1197830

MENDDWDLFSIVRSCKATTYNAPATFYETATPILPITTNTITNNITSPHNTTSYCFDDFTLTQENSTIPISPLKPNDFIELDKLIICSNPTKIIPIPTTSDIPTPSITTTTIPTSLTNTTIITAPSTIAIPNQFTTDTITNTSYHGSDQNSTFFYFPTLIEQQQMQPSEFTELEKCILQFNPITTIPISTITTPNPSTSTPITFTTPTTTINTPTTVTTVIPTTTTTTTMNNYEANGINQYPTVSNFPMLVEQQQVQANQNRVSVFDSISCIKTTTTNFHPELYHPLEPQEPQRNHNQLPILLPQTSSTTLLNTKPKQQKFKQGKRKNNNQVTLVSYVKADKISEDSWRWRKYGQKPIKGSPHPRSYFKCSSFNDCLAKKLVEKIKTGEDIYEVTYLGEHNHKKPANNWNSVVGSSRNMSSNSGLDVVREAGCCSNVRNLGFPNAVMLQLDQPESSKARVLDGE*