AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1198350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1198350 MtrunA17_Chr8g0366921 64.242 330 95 5 1 317 1 320 2.98e-88 274
Msa1198350 MtrunA17_Chr2g0289181 46.781 233 101 4 323 533 1 232 2.24e-58 194
Msa1198350 MtrunA17_Chr6g0470151 43.631 369 182 6 1 359 1 353 1.75e-57 196
Msa1198350 MtrunA17_Chr8g0368721 48.788 330 138 6 1 317 1 312 4.01e-44 158
Msa1198350 MtrunA17_Chr7g0266621 41.818 330 151 6 1 317 1 302 5.85e-32 125
Msa1198350 MtrunA17_Chr2g0293901 52.973 185 68 5 1 182 1 169 7.37e-30 116
Msa1198350 MtrunA17_Chr1g0202461 55.000 100 43 2 313 412 239 336 4.25e-28 115
Msa1198350 MtrunA17_Chr8g0348311 47.899 119 57 3 313 429 134 249 1.81e-24 104
Msa1198350 MtrunA17_Chr7g0248691 46.094 128 52 3 281 408 115 225 4.84e-23 100
Msa1198350 MtrunA17_Chr8g0387501 62.500 72 26 1 337 408 130 200 2.77e-22 96.7
Msa1198350 MtrunA17_Chr7g0266611 37.162 148 73 2 391 518 2 149 4.86e-20 87.4
Msa1198350 MtrunA17_Chr4g0053281 58.333 72 29 1 337 407 267 338 3.98e-19 89.0
Msa1198350 MtrunA17_Chr2g0293481 48.864 88 44 1 331 418 262 348 1.26e-18 89.0
Msa1198350 MtrunA17_Chr7g0249311 43.750 112 55 4 326 432 169 277 1.52e-18 89.4
Msa1198350 MtrunA17_Chr7g0249311 48.611 72 36 1 336 407 392 462 4.14e-14 75.1
Msa1198350 MtrunA17_Chr2g0319961 63.333 60 22 0 337 396 81 140 2.70e-18 84.7
Msa1198350 MtrunA17_Chr7g0249301 47.253 91 46 2 326 416 52 140 3.52e-18 86.7
Msa1198350 MtrunA17_Chr7g0249301 51.562 64 30 1 334 397 290 352 5.88e-13 70.5
Msa1198350 MtrunA17_Chr5g0401821 55.556 72 31 1 322 393 186 256 4.75e-18 84.3
Msa1198350 MtrunA17_Chr1g0184691 62.121 66 21 1 337 398 294 359 4.77e-18 85.9
Msa1198350 MtrunA17_Chr3g0079691 33.333 240 134 11 189 406 113 348 5.87e-18 87.4
Msa1198350 MtrunA17_Chr3g0079691 41.463 82 47 1 336 417 495 575 1.92e-13 73.2
Msa1198350 MtrunA17_Chr3g0139021 51.190 84 36 2 316 395 291 373 7.10e-18 85.9
Msa1198350 MtrunA17_Chr2g0284321 61.667 60 23 0 337 396 36 95 1.17e-17 82.0
Msa1198350 MtrunA17_Chr7g0218081 45.745 94 44 3 332 420 224 315 1.68e-17 85.5
Msa1198350 MtrunA17_Chr7g0218081 46.988 83 42 2 336 418 410 490 6.38e-15 77.4
Msa1198350 MtrunA17_Chr7g0228941 51.471 68 33 0 337 404 53 120 2.93e-17 78.2
Msa1198350 MtrunA17_Chr8g0379461 55.556 63 28 0 337 399 77 139 5.64e-17 80.5
Msa1198350 MtrunA17_Chr4g0071521 49.398 83 41 1 311 393 221 302 8.65e-17 81.6
Msa1198350 MtrunA17_Chr7g0263531 50.000 84 39 3 320 402 173 254 1.75e-16 82.0
Msa1198350 MtrunA17_Chr7g0263531 40.196 102 44 3 313 399 324 423 4.54e-14 74.3
Msa1198350 MtrunA17_Chr1g0147881 48.193 83 42 1 311 393 238 319 2.43e-16 80.5
Msa1198350 MtrunA17_Chr5g0447701 56.522 69 26 3 332 399 88 153 2.94e-16 80.9
Msa1198350 MtrunA17_Chr5g0447701 50.000 60 29 1 337 396 253 311 1.43e-11 66.2
Msa1198350 MtrunA17_Chr7g0270051 49.296 71 36 0 326 396 43 113 5.88e-16 78.2
Msa1198350 MtrunA17_Chr7g0243891 53.425 73 32 2 328 400 208 278 6.64e-16 80.5
Msa1198350 MtrunA17_Chr7g0243891 44.304 79 35 2 336 406 374 451 6.65e-12 68.2
Msa1198350 MtrunA17_Chr4g0074001 42.697 89 38 2 308 396 343 418 1.48e-15 79.3
Msa1198350 MtrunA17_Chr3g0106491 47.917 96 36 5 313 401 174 262 8.86e-15 77.0
Msa1198350 MtrunA17_Chr3g0106491 46.875 64 33 1 334 397 363 425 2.52e-11 66.2
Msa1198350 MtrunA17_Chr4g0042831 50.746 67 32 1 336 402 278 343 3.50e-14 74.3
Msa1198350 MtrunA17_Chr4g0042831 47.143 70 36 1 327 396 136 204 1.61e-13 72.4
Msa1198350 MtrunA17_Chr3g0101131 45.161 93 43 3 314 400 215 305 3.70e-14 75.1
Msa1198350 MtrunA17_Chr3g0101131 46.269 67 35 1 336 402 415 480 8.65e-13 70.9
Msa1198350 MtrunA17_Chr5g0418191 49.254 67 33 1 336 402 320 385 2.41e-13 72.0
Msa1198350 MtrunA17_Chr5g0418191 47.368 76 38 2 327 402 142 215 8.84e-13 70.5
Msa1198350 MtrunA17_Chr5g0443131 48.485 66 33 1 336 401 157 221 2.46e-13 70.9
Msa1198350 MtrunA17_Chr4g0004911 48.438 64 32 1 333 396 181 243 4.32e-13 71.6
Msa1198350 MtrunA17_Chr4g0004911 47.619 63 32 1 334 396 334 395 8.60e-12 67.4
Msa1198350 MtrunA17_Chr2g0294231 47.692 65 33 1 336 400 203 266 4.53e-13 70.9
Msa1198350 MtrunA17_Chr3g0128671 41.489 94 46 3 300 391 98 184 4.85e-13 70.1
Msa1198350 MtrunA17_Chr8g0387981 40.230 87 46 2 311 391 103 189 5.09e-13 70.5
Msa1198350 MtrunA17_Chr7g0238921 44.737 76 41 1 318 393 106 180 5.67e-13 70.1
Msa1198350 MtrunA17_Chr5g0445311 48.387 62 31 1 336 397 364 424 6.58e-13 71.2
Msa1198350 MtrunA17_Chr5g0445311 28.512 242 130 11 181 396 34 258 5.63e-12 68.2
Msa1198350 MtrunA17_Chr8g0347251 40.404 99 49 3 303 391 95 193 8.52e-13 69.7
Msa1198350 MtrunA17_Chr5g0432161 51.562 64 29 2 333 396 241 302 1.07e-12 70.5
Msa1198350 MtrunA17_Chr5g0432161 50.000 62 30 1 336 397 421 481 3.69e-12 68.9
Msa1198350 MtrunA17_Chr2g0302391 46.667 60 32 0 337 396 212 271 1.14e-12 70.1
Msa1198350 MtrunA17_Chr3g0099641 41.333 75 43 1 322 396 238 311 1.60e-12 69.7
Msa1198350 MtrunA17_Chr7g0270191 43.750 80 44 1 336 415 145 223 1.81e-12 68.2
Msa1198350 MtrunA17_Chr8g0335811 44.928 69 36 2 334 402 152 218 2.30e-12 66.6
Msa1198350 MtrunA17_Chr4g0051881 44.928 69 37 1 336 404 178 245 2.50e-12 68.2
Msa1198350 MtrunA17_Chr3g0126391 46.552 58 29 1 336 391 133 190 2.76e-12 68.2
Msa1198350 MtrunA17_Chr3g0129321 44.776 67 34 3 333 398 115 179 4.88e-12 65.5
Msa1198350 MtrunA17_Chr1g0194481 37.079 89 54 2 316 404 139 225 6.39e-12 67.0
Msa1198350 MtrunA17_Chr8g0383351 42.424 66 36 2 334 399 158 221 1.23e-11 64.7
Msa1198350 MtrunA17_Chr5g0418781 33.333 108 70 2 307 414 96 201 1.58e-11 65.1
Msa1198350 MtrunA17_Chr7g0270831 45.614 57 31 0 337 393 217 273 2.28e-11 65.9
Msa1198350 MtrunA17_Chr6g0485431 44.928 69 35 3 329 396 148 214 2.38e-11 65.5
Msa1198350 MtrunA17_Chr8g0383251 30.827 133 80 6 274 396 37 167 2.68e-11 62.8
Msa1198350 MtrunA17_Chr2g0333851 40.278 72 38 1 334 400 167 238 2.92e-11 64.7
Msa1198350 MtrunA17_Chr3g0129361 43.077 65 35 2 334 398 142 204 3.38e-11 63.2
Msa1198350 MtrunA17_Chr7g0224801 41.667 60 34 1 334 393 91 149 3.50e-11 62.0
Msa1198350 MtrunA17_Chr2g0288871 41.667 72 41 1 322 393 292 362 3.87e-11 65.5
Msa1198350 MtrunA17_Chr6g0470161 35.000 120 60 3 431 533 1 119 4.05e-11 60.5
Msa1198350 MtrunA17_Chr1g0150271 41.270 63 37 0 334 396 99 161 4.69e-11 63.5
Msa1198350 MtrunA17_Chr7g0248721 35.556 90 54 3 306 393 109 196 5.15e-11 62.8
Msa1198350 MtrunA17_Chr5g0428351 50.000 60 28 1 337 394 184 243 7.90e-11 63.5
Msa1198350 MtrunA17_Chr5g0432071 36.634 101 50 5 312 410 87 175 8.94e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1198350 AT4G01250.1 34.975 203 106 6 210 408 19 199 1.08e-23 101
Msa1198350 AT5G52830.1 52.525 99 45 2 313 411 143 239 1.65e-23 102
Msa1198350 AT4G23550.1 51.685 89 42 1 320 408 124 211 1.16e-22 99.0
Msa1198350 AT5G45050.4 51.282 78 38 0 316 393 1021 1098 2.34e-19 92.8
Msa1198350 AT5G45050.1 51.282 78 38 0 316 393 1160 1237 2.59e-19 92.8
Msa1198350 AT5G45050.2 51.282 78 38 0 316 393 1132 1209 2.98e-19 92.4
Msa1198350 AT4G24240.1 45.763 118 57 3 280 393 224 338 8.17e-19 88.6
Msa1198350 AT1G29280.1 61.667 60 23 0 337 396 75 134 2.18e-18 85.5
Msa1198350 AT4G31550.2 48.315 89 43 1 316 401 222 310 3.44e-18 86.3
Msa1198350 AT4G31550.1 58.462 65 27 0 337 401 247 311 5.50e-18 85.5
Msa1198350 AT2G23320.1 62.069 58 22 0 337 394 241 298 7.28e-18 85.1
Msa1198350 AT2G34830.1 48.780 82 41 1 323 404 202 282 1.00e-17 85.9
Msa1198350 AT2G34830.2 48.780 82 41 1 323 404 211 291 1.05e-17 86.3
Msa1198350 AT3G04670.1 62.712 59 22 0 337 395 263 321 1.42e-17 84.3
Msa1198350 AT3G58710.1 52.000 75 29 1 337 404 72 146 2.22e-17 82.8
Msa1198350 AT3G58710.2 52.000 75 29 1 337 404 71 145 2.27e-17 82.8
Msa1198350 AT5G28650.1 61.017 59 23 0 337 395 263 321 3.19e-17 83.6
Msa1198350 AT2G24570.1 47.826 92 47 1 304 395 212 302 5.10e-17 82.8
Msa1198350 AT1G30650.1 48.780 82 41 1 323 404 204 284 5.57e-17 84.0
Msa1198350 AT3G01080.3 49.296 71 34 2 332 402 201 269 6.08e-17 82.4
Msa1198350 AT3G01080.2 49.296 71 34 2 332 402 201 269 3.11e-16 81.6
Msa1198350 AT3G01080.2 50.820 61 29 1 336 396 344 403 2.85e-13 72.4
Msa1198350 AT3G01080.1 49.296 71 34 2 332 402 163 231 3.77e-16 81.3
Msa1198350 AT3G01080.1 50.820 61 29 1 336 396 306 365 3.40e-13 72.0
Msa1198350 AT2G30590.1 49.398 83 39 1 316 395 290 372 1.50e-15 79.0
Msa1198350 AT2G37260.1 45.349 86 41 3 313 394 323 406 1.61e-15 79.3
Msa1198350 AT2G37260.1 50.746 67 31 2 331 397 160 224 1.12e-13 73.6
Msa1198350 AT2G37260.2 45.349 86 41 3 313 394 241 324 2.29e-15 78.2
Msa1198350 AT2G37260.2 50.746 67 31 2 331 397 78 142 1.57e-13 72.4
Msa1198350 AT2G37260.3 45.349 86 41 3 313 394 243 326 2.39e-15 78.2
Msa1198350 AT2G37260.3 50.746 67 31 2 331 397 80 144 1.58e-13 72.4
Msa1198350 AT1G13960.1 48.649 74 36 2 332 405 225 296 4.74e-15 78.2
Msa1198350 AT1G13960.1 49.180 61 30 1 336 396 409 468 1.28e-12 70.5
Msa1198350 AT4G26440.1 49.315 73 35 2 335 407 177 247 5.98e-15 78.2
Msa1198350 AT4G26440.1 43.243 74 41 1 334 407 370 442 1.63e-12 70.5
Msa1198350 AT2G03340.1 50.704 71 33 2 331 401 245 313 7.90e-15 77.4
Msa1198350 AT2G03340.1 51.613 62 29 1 336 397 415 475 7.70e-14 74.3
Msa1198350 AT1G13960.2 47.368 76 38 2 332 407 72 145 8.99e-15 76.3
Msa1198350 AT1G13960.2 49.180 61 30 1 336 396 256 315 2.53e-12 68.9
Msa1198350 AT5G56270.1 52.941 68 30 2 335 402 272 337 1.00e-14 77.8
Msa1198350 AT5G56270.1 50.000 62 30 1 336 397 487 547 1.13e-12 71.2
Msa1198350 AT2G38470.1 46.316 95 48 3 326 419 173 265 5.30e-14 75.1
Msa1198350 AT2G38470.1 50.000 62 30 1 336 397 362 422 6.79e-12 68.2
Msa1198350 AT5G41570.1 40.000 85 48 2 311 393 71 154 8.70e-14 70.1
Msa1198350 AT5G07100.1 44.595 74 40 1 329 402 110 182 9.79e-14 72.8
Msa1198350 AT5G07100.1 42.254 71 40 1 334 404 232 301 2.87e-12 68.2
Msa1198350 AT1G64000.1 46.774 62 32 1 332 393 110 170 1.45e-13 70.1
Msa1198350 AT5G45260.1 45.946 74 37 2 337 408 1209 1281 1.51e-13 74.3
Msa1198350 AT1G66550.2 54.386 57 24 1 337 391 104 160 2.01e-13 70.9
Msa1198350 AT1G66550.1 54.386 57 24 1 337 391 109 165 2.35e-13 70.5
Msa1198350 AT5G07100.2 45.833 72 38 1 331 402 19 89 2.77e-13 69.7
Msa1198350 AT5G07100.2 42.254 71 40 1 334 404 139 208 1.20e-11 64.7
Msa1198350 AT5G07100.4 45.833 72 38 1 331 402 19 89 2.77e-13 69.7
Msa1198350 AT5G07100.4 42.254 71 40 1 334 404 139 208 1.20e-11 64.7
Msa1198350 AT5G07100.5 45.833 72 38 1 331 402 19 89 2.77e-13 69.7
Msa1198350 AT5G07100.5 42.254 71 40 1 334 404 139 208 1.20e-11 64.7
Msa1198350 AT5G07100.3 45.833 72 38 1 331 402 19 89 2.77e-13 69.7
Msa1198350 AT5G07100.3 42.254 71 40 1 334 404 139 208 1.20e-11 64.7
Msa1198350 AT4G30935.1 43.056 72 40 1 325 396 320 390 3.62e-13 72.0
Msa1198350 AT2G47260.1 41.176 85 48 2 316 400 155 237 8.10e-13 70.1
Msa1198350 AT2G46130.1 46.667 60 31 1 334 393 28 86 8.88e-13 65.5
Msa1198350 AT5G43290.1 50.794 63 30 1 331 393 109 170 1.11e-12 68.9
Msa1198350 AT5G22570.1 53.226 62 27 1 332 391 106 167 1.83e-12 68.6
Msa1198350 AT2G46400.1 39.604 101 55 3 300 394 64 164 1.97e-12 68.6
Msa1198350 AT1G69310.4 37.755 98 59 2 307 404 119 214 1.99e-12 68.6
Msa1198350 AT1G69310.2 37.755 98 59 2 307 404 119 214 1.99e-12 68.6
Msa1198350 AT1G69310.1 37.755 98 59 2 307 404 119 214 1.99e-12 68.6
Msa1198350 AT2G30250.1 48.485 66 33 1 337 402 329 393 2.39e-12 69.3
Msa1198350 AT2G30250.1 45.455 77 39 3 320 396 151 224 2.59e-12 68.9
Msa1198350 AT2G21900.1 48.387 62 31 1 336 397 109 169 4.54e-12 65.9
Msa1198350 AT2G44745.1 46.667 60 31 1 334 393 143 201 4.84e-12 66.2
Msa1198350 AT2G04880.1 47.692 65 32 2 332 396 107 169 5.40e-12 68.6
Msa1198350 AT2G04880.1 45.205 73 36 2 337 406 308 379 7.42e-12 68.2
Msa1198350 AT2G04880.2 47.692 65 32 2 332 396 107 169 6.05e-12 68.2
Msa1198350 AT2G04880.2 45.205 73 36 2 337 406 284 355 7.82e-12 68.2
Msa1198350 AT4G26640.7 37.864 103 61 3 334 435 169 269 7.51e-12 68.2
Msa1198350 AT4G26640.7 40.506 79 42 2 336 414 341 414 2.39e-11 66.6
Msa1198350 AT4G26640.2 37.864 103 61 3 334 435 209 309 8.65e-12 68.2
Msa1198350 AT4G26640.2 40.506 79 42 2 336 414 381 454 2.65e-11 66.6
Msa1198350 AT4G18170.1 40.698 86 49 2 316 401 153 236 8.72e-12 67.0
Msa1198350 AT5G64810.1 47.761 67 30 3 334 398 108 171 8.74e-12 64.7
Msa1198350 AT4G26640.1 37.864 103 61 3 334 435 137 237 9.95e-12 67.8
Msa1198350 AT4G26640.1 40.506 79 42 2 336 414 309 382 3.07e-11 66.2
Msa1198350 AT4G39410.1 40.506 79 45 2 334 412 221 297 1.09e-11 66.2
Msa1198350 AT4G23810.1 44.828 87 40 4 312 391 130 215 1.12e-11 66.6
Msa1198350 AT5G49520.1 44.118 68 37 1 336 403 221 287 1.17e-11 67.0
Msa1198350 AT4G26640.5 39.423 104 58 5 334 435 33 133 1.61e-11 66.6
Msa1198350 AT4G26640.5 40.506 79 42 2 336 414 205 278 4.08e-11 65.5
Msa1198350 AT4G26640.6 39.423 104 58 5 334 435 33 133 1.61e-11 66.6
Msa1198350 AT4G26640.6 40.506 79 42 2 336 414 205 278 4.08e-11 65.5
Msa1198350 AT4G26640.4 39.423 104 58 5 334 435 33 133 1.61e-11 66.6
Msa1198350 AT4G26640.4 40.506 79 42 2 336 414 205 278 4.08e-11 65.5
Msa1198350 AT4G26640.3 39.423 104 58 5 334 435 33 133 1.61e-11 66.6
Msa1198350 AT4G26640.3 40.506 79 42 2 336 414 205 278 4.08e-11 65.5
Msa1198350 AT1G55600.1 48.333 60 30 1 337 396 308 366 1.69e-11 67.0
Msa1198350 AT1G66560.1 50.000 58 27 1 336 391 103 160 1.96e-11 64.7
Msa1198350 AT5G46350.1 40.244 82 47 2 322 403 170 249 1.98e-11 65.9
Msa1198350 AT5G01900.1 50.000 60 28 1 334 391 108 167 2.07e-11 65.1
Msa1198350 AT1G80590.1 49.206 63 30 1 337 397 86 148 2.21e-11 64.3
Msa1198350 AT4G11070.2 42.105 95 47 4 304 391 73 166 2.37e-11 65.1
Msa1198350 AT4G11070.1 42.105 95 47 4 304 391 105 198 2.71e-11 65.5
Msa1198350 AT2G40740.1 39.080 87 48 2 310 391 144 230 3.18e-11 64.7
Msa1198350 AT2G40740.3 37.931 87 49 2 310 391 153 239 3.37e-11 64.7
Msa1198350 AT4G22070.4 41.667 72 41 1 322 393 284 354 4.15e-11 65.9
Msa1198350 AT4G22070.3 41.667 72 41 1 322 393 284 354 4.15e-11 65.9
Msa1198350 AT4G22070.2 41.667 72 41 1 322 393 284 354 4.15e-11 65.9
Msa1198350 AT4G22070.1 41.667 72 41 1 322 393 284 354 4.15e-11 65.9
Msa1198350 AT3G01970.1 38.272 81 47 2 334 412 63 142 4.17e-11 61.6
Msa1198350 AT1G29860.1 43.478 69 38 1 336 404 136 203 4.74e-11 64.3
Msa1198350 AT4G04450.2 45.614 57 31 0 337 393 199 255 4.96e-11 65.5
Msa1198350 AT1G66600.1 48.276 58 28 1 336 391 103 160 5.27e-11 63.5
Msa1198350 AT2G25000.2 36.145 83 48 1 319 396 81 163 5.61e-11 63.2
Msa1198350 AT2G25000.4 36.145 83 48 1 319 396 81 163 5.61e-11 63.2
Msa1198350 AT2G25000.3 36.145 83 48 1 319 396 103 185 5.81e-11 63.5
Msa1198350 AT1G62300.1 45.614 57 31 0 337 393 313 369 5.88e-11 65.5
Msa1198350 AT5G24110.1 37.975 79 47 1 322 398 99 177 6.79e-11 63.9

Find 136 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCGATTTCACGTCGAAATT+TGG 0.133188 8_1:-49781867 None:intergenic
ATAAATTTCGCTTCTGTATA+CGG 0.189013 8_1:-49783518 None:intergenic
TTGGGTTTAAGTGGGGTAAT+TGG 0.221220 8_1:-49781266 None:intergenic
TGGATGTGAGGACCCTTTAA+TGG 0.244920 8_1:-49782239 None:intergenic
TGGAGATTGTAGTATTATTC+TGG 0.264268 8_1:-49781847 None:intergenic
TGGGTTTAAGTGGGGTAATT+GGG 0.291623 8_1:-49781265 None:intergenic
CTTCATTGAACTAGACAAAT+TGG 0.302614 8_1:+49781292 Msa1198350:CDS
CTAGTTTGTGGTAGTTGAAT+TGG 0.323626 8_1:-49781935 None:intergenic
CAAAATTTAAATCAGGAAAA+AGG 0.334262 8_1:+49781993 Msa1198350:CDS
TCATGGAGATGGAGAAAATA+TGG 0.338703 8_1:+49782208 Msa1198350:CDS
GATTGAAGGGGTTAAGATAT+TGG 0.362111 8_1:-49781360 None:intergenic
ATGATTAACTCTAGTGCTAA+TGG 0.366249 8_1:+49781758 Msa1198350:CDS
ATTGGAATCTTCATTATGTT+GGG 0.366865 8_1:-49783471 None:intergenic
TCATGGTGTTGGTTATTGGT+AGG 0.368208 8_1:-49781163 None:intergenic
TTATAGGACTAGTGGTGGTG+GGG 0.369329 8_1:-49781718 None:intergenic
GTCTAGTTCAATGAAGTCAT+TGG 0.370315 8_1:-49781285 None:intergenic
ATGGAGTTCCGATTATTTGC+TGG 0.373756 8_1:-49783227 None:intergenic
CATTGGAATCTTCATTATGT+TGG 0.374100 8_1:-49783472 None:intergenic
GTTGTGGTGGTAGGGATTAT+AGG 0.375777 8_1:-49781734 None:intergenic
ATGAAGTCATTGGGTTTAAG+TGG 0.379299 8_1:-49781275 None:intergenic
ATAAGGTTTCAGAGGATTCA+TGG 0.385027 8_1:+49782191 Msa1198350:CDS
GGTCAACGCGGTGGGGATAA+TGG 0.386003 8_1:-49781390 None:intergenic
GGATGTGAGGACCCTTTAAT+GGG 0.387521 8_1:-49782238 None:intergenic
GTAGTTGATTGTGACTTCTC+TGG 0.387814 8_1:-49781913 None:intergenic
CATACATGGAAAACGATGAT+TGG 0.388403 8_1:+49781060 None:intergenic
ACCCGAGCCTTGCTGCTCTC+TGG 0.394496 8_1:-49783371 None:intergenic
GTTAAGATATTGGTGGTAGT+AGG 0.395052 8_1:-49781350 None:intergenic
CATGGTGTTGGTTATTGGTA+GGG 0.397049 8_1:-49781162 None:intergenic
TTAAGATATTGGTGGTAGTA+GGG 0.400343 8_1:-49781349 None:intergenic
AGCTGCAACATTACCGCATT+AGG 0.400572 8_1:-49783341 None:intergenic
ACAATAAACCAGCAAATAAT+CGG 0.401514 8_1:+49783219 Msa1198350:CDS
TTGGTTATTGGTAGGGTTTG+AGG 0.409668 8_1:-49781155 None:intergenic
TCAACAGATGATTCAAACTT+TGG 0.410720 8_1:-49783275 None:intergenic
GATGGAGATGGGGATAGTGG+TGG 0.411538 8_1:-49781606 None:intergenic
GATTATAGGACTAGTGGTGG+TGG 0.413064 8_1:-49781720 None:intergenic
AAACATGACACCTATGTTAG+AGG 0.415313 8_1:+49783574 Msa1198350:CDS
GGTAGTAGGGGTAGTGGAGT+TGG 0.420421 8_1:-49781639 None:intergenic
GCCAGAGAGCAGCAAGGCTC+GGG 0.426732 8_1:+49783370 Msa1198350:CDS
AAAGGTGATGGCAGTGGTGA+TGG 0.430730 8_1:-49781669 None:intergenic
GGAGATGGGGATAGTGGTGG+GGG 0.431098 8_1:-49781603 None:intergenic
AAATGATAATCAAGTATCAT+TGG 0.431401 8_1:+49782150 Msa1198350:CDS
TTTCACAAACATCATAAACT+TGG 0.439399 8_1:+49783313 Msa1198350:CDS
AAGTTTGAATCATCTGTTGA+TGG 0.439589 8_1:+49783278 Msa1198350:CDS
AAGGTGATGGCAGTGGTGAT+GGG 0.441027 8_1:-49781668 None:intergenic
TAATCATGGTTGTGGTGGTA+GGG 0.441097 8_1:-49781742 None:intergenic
ATAATGGTGGTTGTGATTGA+AGG 0.441781 8_1:-49781374 None:intergenic
GTAGTAGGGGTAGTGGAGTT+GGG 0.441918 8_1:-49781638 None:intergenic
ACTTATGAAGTGACATATCT+AGG 0.442305 8_1:+49783185 Msa1198350:CDS
TCTAGTTCAATGAAGTCATT+GGG 0.450061 8_1:-49781284 None:intergenic
TCTAACATAGGTGTCATGTT+TGG 0.456315 8_1:-49783572 None:intergenic
AAACGACCAAAATTTAAATC+AGG 0.456553 8_1:+49781986 Msa1198350:CDS
TGACTTCTCTGGAGTTGTTG+TGG 0.463915 8_1:-49781902 None:intergenic
GATTGTAGTATTATTCTGGT+TGG 0.466250 8_1:-49781843 None:intergenic
ATTACCTGCCGAACAACAAC+AGG 0.466894 8_1:+49781814 Msa1198350:CDS
GGCTTGAACCTGTTGTTGTT+CGG 0.469350 8_1:-49781822 None:intergenic
TAAATTTCGCTTCTGTATAC+GGG 0.471681 8_1:-49783517 None:intergenic
ATGGAGATGGGGATAGTGGT+GGG 0.473785 8_1:-49781605 None:intergenic
AGCCAGAGAGCAGCAAGGCT+CGG 0.475353 8_1:+49783369 Msa1198350:CDS
GATGATGGAGATGGGGATAG+TGG 0.477733 8_1:-49781609 None:intergenic
GGTAATGGTAGTAGGGGTAG+TGG 0.478553 8_1:-49781645 None:intergenic
AGCAAGGCTCGGGTTCTTGT+TGG 0.483467 8_1:+49783380 Msa1198350:CDS
ATACATGGAAAACGATGATT+GGG 0.484713 8_1:+49781061 None:intergenic
GTATCATTGGTGAGCTATGT+GGG 0.490327 8_1:+49782163 Msa1198350:CDS
GGTGGGGAAAATGGTTGTGG+TGG 0.491264 8_1:-49781411 None:intergenic
TGAACCTGTTGTTGTTCGGC+AGG 0.492305 8_1:-49781818 None:intergenic
GTTGTGGTGGTCAACGCGGT+GGG 0.494214 8_1:-49781398 None:intergenic
TATGTTGTTCAACGTGTGTT+GGG 0.495961 8_1:-49781529 None:intergenic
ATTATAGGACTAGTGGTGGT+GGG 0.498019 8_1:-49781719 None:intergenic
TTAATCATGGTTGTGGTGGT+AGG 0.500138 8_1:-49781743 None:intergenic
GTTGTTGTGGAACTAATTCA+TGG 0.500678 8_1:-49781889 None:intergenic
TATAGGACTAGTGGTGGTGG+GGG 0.501201 8_1:-49781717 None:intergenic
ACTTAGTCCTTTACCTACAC+TGG 0.501454 8_1:+49783433 Msa1198350:CDS
GGAATAGTGATGATGGAGAT+GGG 0.502969 8_1:-49781617 None:intergenic
TAATGGTGGTTGTGATTGAA+GGG 0.518016 8_1:-49781373 None:intergenic
ATTAGCACTAGAGTTAATCA+TGG 0.521704 8_1:-49781756 None:intergenic
GGAGTTGGGAATAGTGATGA+TGG 0.522950 8_1:-49781624 None:intergenic
TGAAGTCATTGGGTTTAAGT+GGG 0.523364 8_1:-49781274 None:intergenic
TCTAGCTCAGTGAACTCACT+TGG 0.527705 8_1:-49781557 None:intergenic
TTCACAAACATCATAAACTT+GGG 0.528355 8_1:+49783314 Msa1198350:CDS
GCTTTGCCCAGTGTAGGTAA+AGG 0.528650 8_1:-49783440 None:intergenic
GTTATTGGTAGGGTTTGAGG+TGG 0.532101 8_1:-49781152 None:intergenic
TTTCAGAGGATTCATGGAGA+TGG 0.534538 8_1:+49782197 Msa1198350:CDS
GGGGTGTTGATAGTTGTTGG+GGG 0.540872 8_1:-49781698 None:intergenic
TGGAGATGGGGATAGTGGTG+GGG 0.543411 8_1:-49781604 None:intergenic
CTTAGTCCTTTACCTACACT+GGG 0.545206 8_1:+49783434 Msa1198350:CDS
GGTTGTGGTGGTCAACGCGG+TGG 0.551592 8_1:-49781399 None:intergenic
ACTAGAGTTAATCATGGTTG+TGG 0.553627 8_1:-49781750 None:intergenic
TTGGAATCTTCATTATGTTG+GGG 0.555988 8_1:-49783470 None:intergenic
AGTAGGTGTAGTAATGGTCG+AGG 0.558267 8_1:-49781435 None:intergenic
AAAGATCTAAAACTAGTTTG+TGG 0.559260 8_1:-49781947 None:intergenic
AGTATCATTGGTGAGCTATG+TGG 0.560291 8_1:+49782162 Msa1198350:CDS
TAAGATATTGGTGGTAGTAG+GGG 0.560554 8_1:-49781348 None:intergenic
GGTGATGGCAGTGGTGATGG+GGG 0.562066 8_1:-49781666 None:intergenic
ACTAGTGTTAGTGATGGTAT+TGG 0.562993 8_1:-49781468 None:intergenic
AGGTGATGGCAGTGGTGATG+GGG 0.563860 8_1:-49781667 None:intergenic
TGAAGGGGTTAAGATATTGG+TGG 0.566707 8_1:-49781357 None:intergenic
GGGAATAGTGATGATGGAGA+TGG 0.568261 8_1:-49781618 None:intergenic
AGGTGGAGTTTCAGAAATGA+CGG 0.571769 8_1:-49781135 None:intergenic
GTAAAATCATCATAGCAATA+CGG 0.572394 8_1:-49781218 None:intergenic
GATATTGGTGGTAGTAGGGG+TGG 0.572507 8_1:-49781345 None:intergenic
TTAAAGGGTCCTCACATCCA+AGG 0.572922 8_1:+49782242 Msa1198350:CDS
TTGTTTAGCAAGAAAACAAG+TGG 0.573603 8_1:+49783139 Msa1198350:CDS
ATATTGGTGGTAGTAGGGGT+GGG 0.578232 8_1:-49781344 None:intergenic
AATGACGGCAGGAGTAGTAA+AGG 0.584210 8_1:-49781120 None:intergenic
GAGATGGGGATAGTGGTGGG+GGG 0.585258 8_1:-49781602 None:intergenic
ATATGTTGTTCAACGTGTGT+TGG 0.589618 8_1:-49781530 None:intergenic
GGAGTTTCAGAAATGACGGC+AGG 0.590669 8_1:-49781131 None:intergenic
TATTGGTGGTAGTAGGGGTG+GGG 0.595619 8_1:-49781343 None:intergenic
AATGAGAAATCAGAAACGGC+GGG 0.597213 8_1:-49781794 None:intergenic
ATGAAAACTAGTGTTAGTGA+TGG 0.606015 8_1:-49781474 None:intergenic
GATATGAGTAGGTGTAGTAA+TGG 0.607202 8_1:-49781441 None:intergenic
GTATTGGTGGTGATATGAGT+AGG 0.607640 8_1:-49781452 None:intergenic
TGTACTAAAGGTGATGGCAG+TGG 0.608456 8_1:-49781675 None:intergenic
GAATAGTGATGATGGAGATG+GGG 0.612232 8_1:-49781616 None:intergenic
AGTTCACTGAGCTAGAACAA+TGG 0.612785 8_1:+49781564 Msa1198350:CDS
AGTGTTAGTGATGGTATTGG+TGG 0.615093 8_1:-49781465 None:intergenic
AGAGTTAATCATGGTTGTGG+TGG 0.615137 8_1:-49781747 None:intergenic
ACTCCATTGTCGATAGCTCT+CGG 0.621472 8_1:+49783243 Msa1198350:CDS
GTAGGTGTAGTAATGGTCGA+GGG 0.624066 8_1:-49781434 None:intergenic
AGGTAATGAGAAATCAGAAA+CGG 0.625218 8_1:-49781798 None:intergenic
GAAGTCATTGGGTTTAAGTG+GGG 0.626876 8_1:-49781273 None:intergenic
AATGGTGGTTGTGATTGAAG+GGG 0.628525 8_1:-49781372 None:intergenic
AAACTTGGGTTCTCCTAATG+CGG 0.633652 8_1:+49783328 Msa1198350:CDS
GTACCGAGAGCTATCGACAA+TGG 0.639321 8_1:-49783246 None:intergenic
GGTAGGGATTATAGGACTAG+TGG 0.644053 8_1:-49781726 None:intergenic
TTGTGGTGGTCAACGCGGTG+GGG 0.645732 8_1:-49781397 None:intergenic
CAACGCGGTGGGGATAATGG+TGG 0.646185 8_1:-49781387 None:intergenic
TATCATTGGTGAGCTATGTG+GGG 0.653483 8_1:+49782164 Msa1198350:CDS
TAATGAGAAATCAGAAACGG+CGG 0.658115 8_1:-49781795 None:intergenic
ATCATTGGTGAGCTATGTGG+GGG 0.659269 8_1:+49782165 Msa1198350:CDS
TAGGTGTAGTAATGGTCGAG+GGG 0.662277 8_1:-49781433 None:intergenic
AGGGATTATAGGACTAGTGG+TGG 0.676672 8_1:-49781723 None:intergenic
GACGGCAGGAGTAGTAAAGG+TGG 0.679847 8_1:-49781117 None:intergenic
TGATCAGCCAGAGAGCAGCA+AGG 0.680979 8_1:+49783364 Msa1198350:CDS
AATGGTTGTGGTGGTCAACG+CGG 0.682395 8_1:-49781402 None:intergenic
AGGTGTAGTAATGGTCGAGG+GGG 0.695973 8_1:-49781432 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAAAAATATATATTTAT+AGG + chr8_1:49782822-49782841 Msa1198350:intron 0.0%
!!! AATATTGTTTTAATATAAGA+AGG - chr8_1:49782306-49782325 None:intergenic 10.0%
!! TTAATATTGAATAAATTTGT+GGG - chr8_1:49782640-49782659 None:intergenic 10.0%
!! AATTTATTCAATATTAACAT+TGG + chr8_1:49782643-49782662 Msa1198350:intron 10.0%
!!! ATATGAATTTTACAAATATA+AGG - chr8_1:49782874-49782893 None:intergenic 10.0%
!! ATATAAACACATATTTATAT+AGG - chr8_1:49782999-49783018 None:intergenic 10.0%
!!! TTTTTTCTATAAGAAAAGAA+AGG - chr8_1:49782133-49782152 None:intergenic 15.0%
!! GTTAATATTGAATAAATTTG+TGG - chr8_1:49782641-49782660 None:intergenic 15.0%
!! ATATTCCATATGAATAAATT+TGG + chr8_1:49782713-49782732 Msa1198350:intron 15.0%
!!! AATATACCACTTTTTTATTT+CGG - chr8_1:49782765-49782784 None:intergenic 15.0%
!! AAAAATCACTATAAATGTAA+GGG - chr8_1:49782900-49782919 None:intergenic 15.0%
!! TAAAAATCACTATAAATGTA+AGG - chr8_1:49782901-49782920 None:intergenic 15.0%
!!! ATATGTGTTTATATGATTTT+AGG + chr8_1:49783005-49783024 Msa1198350:intron 15.0%
!!! CTTTTTCCTGATTTAAATTT+TGG - chr8_1:49781995-49782014 None:intergenic 20.0%
!! CAAAATTTAAATCAGGAAAA+AGG + chr8_1:49781993-49782012 Msa1198350:CDS 20.0%
!!! AAGAAAGGTAAAATGATTTT+AGG - chr8_1:49782118-49782137 None:intergenic 20.0%
!! AAATGATAATCAAGTATCAT+TGG + chr8_1:49782150-49782169 Msa1198350:CDS 20.0%
!! GCATTTAAATGAGAAAAATA+TGG + chr8_1:49782388-49782407 Msa1198350:intron 20.0%
!! AACAAAACAAAAAATCAAAG+AGG - chr8_1:49782568-49782587 None:intergenic 20.0%
!! AGGATTATAGAAAAAAGATA+GGG - chr8_1:49782600-49782619 None:intergenic 20.0%
!! AAGGATTATAGAAAAAAGAT+AGG - chr8_1:49782601-49782620 None:intergenic 20.0%
!!! TATCTTTTTTCTATAATCCT+TGG + chr8_1:49782600-49782619 Msa1198350:intron 20.0%
!! TGATTCATATGAAAAAACAT+TGG - chr8_1:49783492-49783511 None:intergenic 20.0%
! GTAAAATCATCATAGCAATA+CGG - chr8_1:49781221-49781240 None:intergenic 25.0%
!! AAAGATCTAAAACTAGTTTG+TGG - chr8_1:49781950-49781969 None:intergenic 25.0%
!!! GATTTAAATTTTGGTCGTTT+TGG - chr8_1:49781986-49782005 None:intergenic 25.0%
! AAACGACCAAAATTTAAATC+AGG + chr8_1:49781986-49782005 Msa1198350:CDS 25.0%
!!! TAAAATGATTTTAGGTCACA+AGG - chr8_1:49782110-49782129 None:intergenic 25.0%
!! TTTTGAATGCTTAAAAACCT+TGG - chr8_1:49782262-49782281 None:intergenic 25.0%
! AACAAATCTTTCACTTATTG+TGG + chr8_1:49782935-49782954 Msa1198350:intron 25.0%
! CAAGTGGAAAAAATAAAAGA+TGG + chr8_1:49783155-49783174 Msa1198350:CDS 25.0%
! ACAATAAACCAGCAAATAAT+CGG + chr8_1:49783219-49783238 Msa1198350:CDS 25.0%
! TTTCACAAACATCATAAACT+TGG + chr8_1:49783313-49783332 Msa1198350:CDS 25.0%
! TTCACAAACATCATAAACTT+GGG + chr8_1:49783314-49783333 Msa1198350:CDS 25.0%
!!! TAAGTTCAGTTTTTAGATCA+GGG - chr8_1:49783418-49783437 None:intergenic 25.0%
! ATTGGAATCTTCATTATGTT+GGG - chr8_1:49783474-49783493 None:intergenic 25.0%
! ATAAATTTCGCTTCTGTATA+CGG - chr8_1:49783521-49783540 None:intergenic 25.0%
! AAAAAGAATTCCTCTAACAT+AGG - chr8_1:49783587-49783606 None:intergenic 25.0%
!! TATGTTAGAGGAATTCTTTT+TGG + chr8_1:49783586-49783605 Msa1198350:CDS 25.0%
!!! TTTTTCATGGTGTTGGTTAT+TGG - chr8_1:49781170-49781189 None:intergenic 30.0%
!!! GATGTTATTTTTCATGGTGT+TGG - chr8_1:49781177-49781196 None:intergenic 30.0%
!!! GGATGTGATGTTATTTTTCA+TGG - chr8_1:49781183-49781202 None:intergenic 30.0%
! TCTAGTTCAATGAAGTCATT+GGG - chr8_1:49781287-49781306 None:intergenic 30.0%
CTTCATTGAACTAGACAAAT+TGG + chr8_1:49781292-49781311 Msa1198350:CDS 30.0%
! TTAAGATATTGGTGGTAGTA+GGG - chr8_1:49781352-49781371 None:intergenic 30.0%
ATGAAAACTAGTGTTAGTGA+TGG - chr8_1:49781477-49781496 None:intergenic 30.0%
!!! ATCACTAACACTAGTTTTCA+TGG + chr8_1:49781476-49781495 Msa1198350:CDS 30.0%
ATTAGCACTAGAGTTAATCA+TGG - chr8_1:49781759-49781778 None:intergenic 30.0%
ATGATTAACTCTAGTGCTAA+TGG + chr8_1:49781758-49781777 Msa1198350:CDS 30.0%
AGGTAATGAGAAATCAGAAA+CGG - chr8_1:49781801-49781820 None:intergenic 30.0%
GATTGTAGTATTATTCTGGT+TGG - chr8_1:49781846-49781865 None:intergenic 30.0%
TGGAGATTGTAGTATTATTC+TGG - chr8_1:49781850-49781869 None:intergenic 30.0%
TATGGACAAAAACCCATTAA+AGG + chr8_1:49782226-49782245 Msa1198350:CDS 30.0%
ATGGACAAAAACCCATTAAA+GGG + chr8_1:49782227-49782246 Msa1198350:CDS 30.0%
TAAATGCAACTCTTTGCAAT+GGG - chr8_1:49782375-49782394 None:intergenic 30.0%
TTAAATGCAACTCTTTGCAA+TGG - chr8_1:49782376-49782395 None:intergenic 30.0%
TCCATATGAATAAATTTGGC+AGG + chr8_1:49782717-49782736 Msa1198350:intron 30.0%
TCCTGCCAAATTTATTCATA+TGG - chr8_1:49782721-49782740 None:intergenic 30.0%
ATCTTTCACTTATTGTGGTA+CGG + chr8_1:49782940-49782959 Msa1198350:intron 30.0%
! TTTTCTTGCTAAACAATCAC+TGG - chr8_1:49783135-49783154 None:intergenic 30.0%
TTGTTTAGCAAGAAAACAAG+TGG + chr8_1:49783139-49783158 Msa1198350:CDS 30.0%
ACTTATGAAGTGACATATCT+AGG + chr8_1:49783185-49783204 Msa1198350:CDS 30.0%
TCAACAGATGATTCAAACTT+TGG - chr8_1:49783278-49783297 None:intergenic 30.0%
AAGTTTGAATCATCTGTTGA+TGG + chr8_1:49783278-49783297 Msa1198350:CDS 30.0%
!! CTAAGTTCAGTTTTTAGATC+AGG - chr8_1:49783419-49783438 None:intergenic 30.0%
TTGGAATCTTCATTATGTTG+GGG - chr8_1:49783473-49783492 None:intergenic 30.0%
CATTGGAATCTTCATTATGT+TGG - chr8_1:49783475-49783494 None:intergenic 30.0%
TAAATTTCGCTTCTGTATAC+GGG - chr8_1:49783520-49783539 None:intergenic 30.0%
!!! AATACGGTGTTGTGTTTTGA+GGG - chr8_1:49781205-49781224 None:intergenic 35.0%
!!! TGGGATTGTGCTATTTTCTT+GGG - chr8_1:49781249-49781268 None:intergenic 35.0%
!!! TTGGGATTGTGCTATTTTCT+TGG - chr8_1:49781250-49781269 None:intergenic 35.0%
TGAAGTCATTGGGTTTAAGT+GGG - chr8_1:49781277-49781296 None:intergenic 35.0%
ATGAAGTCATTGGGTTTAAG+TGG - chr8_1:49781278-49781297 None:intergenic 35.0%
! GTCTAGTTCAATGAAGTCAT+TGG - chr8_1:49781288-49781307 None:intergenic 35.0%
! GGGGATAATTTTTGTTGGAT+TGG - chr8_1:49781327-49781346 None:intergenic 35.0%
! TAAGATATTGGTGGTAGTAG+GGG - chr8_1:49781351-49781370 None:intergenic 35.0%
! GTTAAGATATTGGTGGTAGT+AGG - chr8_1:49781353-49781372 None:intergenic 35.0%
GATTGAAGGGGTTAAGATAT+TGG - chr8_1:49781363-49781382 None:intergenic 35.0%
TAATGGTGGTTGTGATTGAA+GGG - chr8_1:49781376-49781395 None:intergenic 35.0%
ATAATGGTGGTTGTGATTGA+AGG - chr8_1:49781377-49781396 None:intergenic 35.0%
GATATGAGTAGGTGTAGTAA+TGG - chr8_1:49781444-49781463 None:intergenic 35.0%
ACTAGTGTTAGTGATGGTAT+TGG - chr8_1:49781471-49781490 None:intergenic 35.0%
TATGTTGTTCAACGTGTGTT+GGG - chr8_1:49781532-49781551 None:intergenic 35.0%
ATATGTTGTTCAACGTGTGT+TGG - chr8_1:49781533-49781552 None:intergenic 35.0%
ACTAGAGTTAATCATGGTTG+TGG - chr8_1:49781753-49781772 None:intergenic 35.0%
TAATGAGAAATCAGAAACGG+CGG - chr8_1:49781798-49781817 None:intergenic 35.0%
GTTGTTGTGGAACTAATTCA+TGG - chr8_1:49781892-49781911 None:intergenic 35.0%
! CTAGTTTGTGGTAGTTGAAT+TGG - chr8_1:49781938-49781957 None:intergenic 35.0%
!!! GGTCGTTTTGGTTTTGTATT+TGG - chr8_1:49781974-49781993 None:intergenic 35.0%
ATAAGGTTTCAGAGGATTCA+TGG + chr8_1:49782191-49782210 Msa1198350:CDS 35.0%
TCATGGAGATGGAGAAAATA+TGG + chr8_1:49782208-49782227 Msa1198350:CDS 35.0%
! CTAATTAAAACCCTTGGTGT+GGG - chr8_1:49782347-49782366 None:intergenic 35.0%
ACTAATTAAAACCCTTGGTG+TGG - chr8_1:49782348-49782367 None:intergenic 35.0%
!!! ACACCAAGGGTTTTAATTAG+TGG + chr8_1:49782347-49782366 Msa1198350:intron 35.0%
GAACCACTAATTAAAACCCT+TGG - chr8_1:49782353-49782372 None:intergenic 35.0%
GGGAACTAAAAGAAATACCA+AGG - chr8_1:49782620-49782639 None:intergenic 35.0%
CAGAGACCGAAATAAAAAAG+TGG + chr8_1:49782756-49782775 Msa1198350:intron 35.0%
! TCTAACATAGGTGTCATGTT+TGG - chr8_1:49783575-49783594 None:intergenic 35.0%
AAACATGACACCTATGTTAG+AGG + chr8_1:49783574-49783593 Msa1198350:CDS 35.0%
AGGTGGAGTTTCAGAAATGA+CGG - chr8_1:49781138-49781157 None:intergenic 40.0%
TTGGTTATTGGTAGGGTTTG+AGG - chr8_1:49781158-49781177 None:intergenic 40.0%
!! CATGGTGTTGGTTATTGGTA+GGG - chr8_1:49781165-49781184 None:intergenic 40.0%
!! TCATGGTGTTGGTTATTGGT+AGG - chr8_1:49781166-49781185 None:intergenic 40.0%
!!! ATACGGTGTTGTGTTTTGAG+GGG - chr8_1:49781204-49781223 None:intergenic 40.0%
!!! CAATACGGTGTTGTGTTTTG+AGG - chr8_1:49781206-49781225 None:intergenic 40.0%
TGGGTTTAAGTGGGGTAATT+GGG - chr8_1:49781268-49781287 None:intergenic 40.0%
TTGGGTTTAAGTGGGGTAAT+TGG - chr8_1:49781269-49781288 None:intergenic 40.0%
GAAGTCATTGGGTTTAAGTG+GGG - chr8_1:49781276-49781295 None:intergenic 40.0%
TGAAGGGGTTAAGATATTGG+TGG - chr8_1:49781360-49781379 None:intergenic 40.0%
AATGGTGGTTGTGATTGAAG+GGG - chr8_1:49781375-49781394 None:intergenic 40.0%
!! GTATTGGTGGTGATATGAGT+AGG - chr8_1:49781455-49781474 None:intergenic 40.0%
! AGTGTTAGTGATGGTATTGG+TGG - chr8_1:49781468-49781487 None:intergenic 40.0%
AGTTCACTGAGCTAGAACAA+TGG + chr8_1:49781564-49781583 Msa1198350:CDS 40.0%
!! GAATAGTGATGATGGAGATG+GGG - chr8_1:49781619-49781638 None:intergenic 40.0%
!! GGAATAGTGATGATGGAGAT+GGG - chr8_1:49781620-49781639 None:intergenic 40.0%
! ATTATAGGACTAGTGGTGGT+GGG - chr8_1:49781722-49781741 None:intergenic 40.0%
TAATCATGGTTGTGGTGGTA+GGG - chr8_1:49781745-49781764 None:intergenic 40.0%
TTAATCATGGTTGTGGTGGT+AGG - chr8_1:49781746-49781765 None:intergenic 40.0%
AGAGTTAATCATGGTTGTGG+TGG - chr8_1:49781750-49781769 None:intergenic 40.0%
AATGAGAAATCAGAAACGGC+GGG - chr8_1:49781797-49781816 None:intergenic 40.0%
! GTCGATTTCACGTCGAAATT+TGG - chr8_1:49781870-49781889 None:intergenic 40.0%
GTAGTTGATTGTGACTTCTC+TGG - chr8_1:49781916-49781935 None:intergenic 40.0%
AGTATCATTGGTGAGCTATG+TGG + chr8_1:49782162-49782181 Msa1198350:CDS 40.0%
GTATCATTGGTGAGCTATGT+GGG + chr8_1:49782163-49782182 Msa1198350:CDS 40.0%
TATCATTGGTGAGCTATGTG+GGG + chr8_1:49782164-49782183 Msa1198350:CDS 40.0%
TTTCAGAGGATTCATGGAGA+TGG + chr8_1:49782197-49782216 Msa1198350:CDS 40.0%
GCTTAAAAACCTTGGATGTG+AGG - chr8_1:49782254-49782273 None:intergenic 40.0%
ATGGAGTTCCGATTATTTGC+TGG - chr8_1:49783230-49783249 None:intergenic 40.0%
AAACTTGGGTTCTCCTAATG+CGG + chr8_1:49783328-49783347 Msa1198350:CDS 40.0%
ACTTAGTCCTTTACCTACAC+TGG + chr8_1:49783433-49783452 Msa1198350:CDS 40.0%
CTTAGTCCTTTACCTACACT+GGG + chr8_1:49783434-49783453 Msa1198350:CDS 40.0%
! TATTTTGCTTTGCCCAGTGT+AGG - chr8_1:49783449-49783468 None:intergenic 40.0%
AATGACGGCAGGAGTAGTAA+AGG - chr8_1:49781123-49781142 None:intergenic 45.0%
GTTATTGGTAGGGTTTGAGG+TGG - chr8_1:49781155-49781174 None:intergenic 45.0%
! GGGGTGGGGATAATTTTTGT+TGG - chr8_1:49781332-49781351 None:intergenic 45.0%
! ATATTGGTGGTAGTAGGGGT+GGG - chr8_1:49781347-49781366 None:intergenic 45.0%
TAGGTGTAGTAATGGTCGAG+GGG - chr8_1:49781436-49781455 None:intergenic 45.0%
GTAGGTGTAGTAATGGTCGA+GGG - chr8_1:49781437-49781456 None:intergenic 45.0%
AGTAGGTGTAGTAATGGTCG+AGG - chr8_1:49781438-49781457 None:intergenic 45.0%
! TCTAGCTCAGTGAACTCACT+TGG - chr8_1:49781560-49781579 None:intergenic 45.0%
!! GGGAATAGTGATGATGGAGA+TGG - chr8_1:49781621-49781640 None:intergenic 45.0%
GGAGTTGGGAATAGTGATGA+TGG - chr8_1:49781627-49781646 None:intergenic 45.0%
! TGATGGGGGTAATGGTAGTA+GGG - chr8_1:49781655-49781674 None:intergenic 45.0%
! TGTACTAAAGGTGATGGCAG+TGG - chr8_1:49781678-49781697 None:intergenic 45.0%
! AGTTGTTGGGGGTGTACTAA+AGG - chr8_1:49781690-49781709 None:intergenic 45.0%
!! TGGGGGTGTTGATAGTTGTT+GGG - chr8_1:49781703-49781722 None:intergenic 45.0%
! TTATAGGACTAGTGGTGGTG+GGG - chr8_1:49781721-49781740 None:intergenic 45.0%
! GATTATAGGACTAGTGGTGG+TGG - chr8_1:49781723-49781742 None:intergenic 45.0%
! AGGGATTATAGGACTAGTGG+TGG - chr8_1:49781726-49781745 None:intergenic 45.0%
GGTAGGGATTATAGGACTAG+TGG - chr8_1:49781729-49781748 None:intergenic 45.0%
GTTGTGGTGGTAGGGATTAT+AGG - chr8_1:49781737-49781756 None:intergenic 45.0%
ATTACCTGCCGAACAACAAC+AGG + chr8_1:49781814-49781833 Msa1198350:CDS 45.0%
! GGCTTGAACCTGTTGTTGTT+CGG - chr8_1:49781825-49781844 None:intergenic 45.0%
!! TGACTTCTCTGGAGTTGTTG+TGG - chr8_1:49781905-49781924 None:intergenic 45.0%
ATCATTGGTGAGCTATGTGG+GGG + chr8_1:49782165-49782184 Msa1198350:CDS 45.0%
GGATGTGAGGACCCTTTAAT+GGG - chr8_1:49782241-49782260 None:intergenic 45.0%
TGGATGTGAGGACCCTTTAA+TGG - chr8_1:49782242-49782261 None:intergenic 45.0%
TTAAAGGGTCCTCACATCCA+AGG + chr8_1:49782242-49782261 Msa1198350:CDS 45.0%
CACTTATTGTGGTACGGAGT+TGG + chr8_1:49782946-49782965 Msa1198350:intron 45.0%
ACTCCATTGTCGATAGCTCT+CGG + chr8_1:49783243-49783262 Msa1198350:CDS 45.0%
AGCTGCAACATTACCGCATT+AGG - chr8_1:49783344-49783363 None:intergenic 45.0%
!! TGTAAAATATATTAAATAAT+AGG - chr8_1:49782032-49782051 None:intergenic 5.0%
GGAGTTTCAGAAATGACGGC+AGG - chr8_1:49781134-49781153 None:intergenic 50.0%
! TATTGGTGGTAGTAGGGGTG+GGG - chr8_1:49781346-49781365 None:intergenic 50.0%
! GATATTGGTGGTAGTAGGGG+TGG - chr8_1:49781348-49781367 None:intergenic 50.0%
AATGGTTGTGGTGGTCAACG+CGG - chr8_1:49781405-49781424 None:intergenic 50.0%
AGGTGTAGTAATGGTCGAGG+GGG - chr8_1:49781435-49781454 None:intergenic 50.0%
! TAGTGGTGGGGGGATTGAAT+TGG - chr8_1:49781595-49781614 None:intergenic 50.0%
! ATGGAGATGGGGATAGTGGT+GGG - chr8_1:49781608-49781627 None:intergenic 50.0%
!! GATGATGGAGATGGGGATAG+TGG - chr8_1:49781612-49781631 None:intergenic 50.0%
!! GTAGTAGGGGTAGTGGAGTT+GGG - chr8_1:49781641-49781660 None:intergenic 50.0%
! GGTAATGGTAGTAGGGGTAG+TGG - chr8_1:49781648-49781667 None:intergenic 50.0%
! GATGGGGGTAATGGTAGTAG+GGG - chr8_1:49781654-49781673 None:intergenic 50.0%
! GTGATGGGGGTAATGGTAGT+AGG - chr8_1:49781656-49781675 None:intergenic 50.0%
! AAGGTGATGGCAGTGGTGAT+GGG - chr8_1:49781671-49781690 None:intergenic 50.0%
! AAAGGTGATGGCAGTGGTGA+TGG - chr8_1:49781672-49781691 None:intergenic 50.0%
! TGGGGGTGTACTAAAGGTGA+TGG - chr8_1:49781684-49781703 None:intergenic 50.0%
!! GGGGTGTTGATAGTTGTTGG+GGG - chr8_1:49781701-49781720 None:intergenic 50.0%
!! GGGGGTGTTGATAGTTGTTG+GGG - chr8_1:49781702-49781721 None:intergenic 50.0%
!! GTGGGGGTGTTGATAGTTGT+TGG - chr8_1:49781704-49781723 None:intergenic 50.0%
!! TATAGGACTAGTGGTGGTGG+GGG - chr8_1:49781720-49781739 None:intergenic 50.0%
! TGAACCTGTTGTTGTTCGGC+AGG - chr8_1:49781821-49781840 None:intergenic 50.0%
TGATACACACACCCACACCA+AGG + chr8_1:49782333-49782352 Msa1198350:intron 50.0%
GATACACACACCCACACCAA+GGG + chr8_1:49782334-49782353 Msa1198350:intron 50.0%
GTACCGAGAGCTATCGACAA+TGG - chr8_1:49783249-49783268 None:intergenic 50.0%
GCTTTGCCCAGTGTAGGTAA+AGG - chr8_1:49783443-49783462 None:intergenic 50.0%
GACGGCAGGAGTAGTAAAGG+TGG - chr8_1:49781120-49781139 None:intergenic 55.0%
GGTGGGGAAAATGGTTGTGG+TGG - chr8_1:49781414-49781433 None:intergenic 55.0%
TAGTAATGGTCGAGGGGGTG+GGG - chr8_1:49781430-49781449 None:intergenic 55.0%
GTAGTAATGGTCGAGGGGGT+GGG - chr8_1:49781431-49781450 None:intergenic 55.0%
TGTAGTAATGGTCGAGGGGG+TGG - chr8_1:49781432-49781451 None:intergenic 55.0%
! TGGAGATGGGGATAGTGGTG+GGG - chr8_1:49781607-49781626 None:intergenic 55.0%
! GATGGAGATGGGGATAGTGG+TGG - chr8_1:49781609-49781628 None:intergenic 55.0%
!! GGTAGTAGGGGTAGTGGAGT+TGG - chr8_1:49781642-49781661 None:intergenic 55.0%
! AGGTGATGGCAGTGGTGATG+GGG - chr8_1:49781670-49781689 None:intergenic 55.0%
GAGCTATGTGGGGGCAGATA+AGG + chr8_1:49782174-49782193 Msa1198350:CDS 55.0%
GGGGGCAGATAAGGTTTCAG+AGG + chr8_1:49782183-49782202 Msa1198350:CDS 55.0%
TGATCAGCCAGAGAGCAGCA+AGG + chr8_1:49783364-49783383 Msa1198350:CDS 55.0%
AGCAAGGCTCGGGTTCTTGT+TGG + chr8_1:49783380-49783399 Msa1198350:CDS 55.0%
! CAACGCGGTGGGGATAATGG+TGG - chr8_1:49781390-49781409 None:intergenic 60.0%
GGTCAACGCGGTGGGGATAA+TGG - chr8_1:49781393-49781412 None:intergenic 60.0%
TTGTGGTGGTCAACGCGGTG+GGG - chr8_1:49781400-49781419 None:intergenic 60.0%
GTTGTGGTGGTCAACGCGGT+GGG - chr8_1:49781401-49781420 None:intergenic 60.0%
GGGGGTGGGGAAAATGGTTG+TGG - chr8_1:49781417-49781436 None:intergenic 60.0%
! GAGATGGGGATAGTGGTGGG+GGG - chr8_1:49781605-49781624 None:intergenic 60.0%
! GGAGATGGGGATAGTGGTGG+GGG - chr8_1:49781606-49781625 None:intergenic 60.0%
!! GGCAGTGGTGATGGGGGTAA+TGG - chr8_1:49781663-49781682 None:intergenic 60.0%
!! GGTGATGGCAGTGGTGATGG+GGG - chr8_1:49781669-49781688 None:intergenic 60.0%
AGCCAGAGAGCAGCAAGGCT+CGG + chr8_1:49783369-49783388 Msa1198350:CDS 60.0%
GGTTGTGGTGGTCAACGCGG+TGG - chr8_1:49781402-49781421 None:intergenic 65.0%
GGTCGAGGGGGTGGGGAAAA+TGG - chr8_1:49781423-49781442 None:intergenic 65.0%
GCCAGAGAGCAGCAAGGCTC+GGG + chr8_1:49783370-49783389 Msa1198350:CDS 65.0%
ACCCGAGCCTTGCTGCTCTC+TGG - chr8_1:49783374-49783393 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 49781065 49783646 49781065 ID=Msa1198350;Name=Msa1198350
chr8_1 mRNA 49781065 49783646 49781065 ID=Msa1198350-mRNA-1;Parent=Msa1198350;Name=Msa1198350-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|3|0|534
chr8_1 exon 49781065 49782014 49781065 ID=Msa1198350-mRNA-1:exon:15628;Parent=Msa1198350-mRNA-1
chr8_1 exon 49782147 49782263 49782147 ID=Msa1198350-mRNA-1:exon:15629;Parent=Msa1198350-mRNA-1
chr8_1 exon 49783109 49783646 49783109 ID=Msa1198350-mRNA-1:exon:15630;Parent=Msa1198350-mRNA-1
chr8_1 CDS 49781065 49782014 49781065 ID=Msa1198350-mRNA-1:cds;Parent=Msa1198350-mRNA-1
chr8_1 CDS 49782147 49782263 49782147 ID=Msa1198350-mRNA-1:cds;Parent=Msa1198350-mRNA-1
chr8_1 CDS 49783109 49783646 49783109 ID=Msa1198350-mRNA-1:cds;Parent=Msa1198350-mRNA-1
Gene Sequence

>Msa1198350

ATGGAAAACGATGATTGGGATCTCTTTTCTATTGTACGTAGCTGCAAAGCTACCACCTTTACTACTCCTGCCGTCATTTCTGAAACTCCACCTCAAACCCTACCAATAACCAACACCATGAAAAATAACATCACATCCCCTCAAAACACAACACCGTATTGCTATGATGATTTTACATTTACCCAAGAAAATAGCACAATCCCAATTACCCCACTTAAACCCAATGACTTCATTGAACTAGACAAATTGGTAATTCGTTCCAATCCAACAAAAATTATCCCCACCCCTACTACCACCAATATCTTAACCCCTTCAATCACAACCACCATTATCCCCACCGCGTTGACCACCACAACCATTTTCCCCACCCCCTCGACCATTACTACACCTACTCATATCACCACCAATACCATCACTAACACTAGTTTTCATGGATCTGATCAAAATTCTACATTTTCTTATTTCCCAACACACGTTGAACAACATATTCAACCAAGTGAGTTCACTGAGCTAGAACAATGGATGCTCCAATTCAATCCCCCCACCACTATCCCCATCTCCATCATCACTATTCCCAACTCCACTACCCCTACTACCATTACCCCCATCACCACTGCCATCACCTTTAGTACACCCCCAACAACTATCAACACCCCCACCACCACTAGTCCTATAATCCCTACCACCACAACCATGATTAACTCTAGTGCTAATGGACTCAATCAATATCCCGCCGTTTCTGATTTCTCATTACCTGCCGAACAACAACAGGTTCAAGCCAACCAGAATAATACTACAATCTCCAAATTTCGACGTGAAATCGACCATGAATTAGTTCCACAACAACTCCAGAGAAGTCACAATCAACTACCAATTCAACTACCACAAACTAGTTTTAGATCTTTACCAAATACAAAACCAAAACGACCAAAATTTAAATCAGGAAAAAGAAAAAATGATAATCAAGTATCATTGGTGAGCTATGTGGGGGCAGATAAGGTTTCAGAGGATTCATGGAGATGGAGAAAATATGGACAAAAACCCATTAAAGGGTCCTCACATCCAAGAAGCTACTACAAATGTAGCAGTTCCAGTGATTGTTTAGCAAGAAAACAAGTGGAAAAAATAAAAGATGGAGATGACACTTATGAAGTGACATATCTAGGAGAACACAATCACAATAAACCAGCAAATAATCGGAACTCCATTGTCGATAGCTCTCGGTACATGTCACCAAAGTTTGAATCATCTGTTGATGGAGAAGCTAGATGTTTCACAAACATCATAAACTTGGGTTCTCCTAATGCGGTAATGTTGCAGCTTGATCAGCCAGAGAGCAGCAAGGCTCGGGTTCTTGTTGGTCAATCAAAAATCCCTGATCTAAAAACTGAACTTAGTCCTTTACCTACACTGGGCAAAGCAAAATATCCCCAACATAATGAAGATTCCAATGTTTTTTCATATGAATCAGAAATCCCGTATACAGAAGCGAAATTTATTGAAAGCTTCAAAGAAGATGAAATTTTGATACCAAACATGACACCTATGTTAGAGGAATTCTTTTTGGATTTCAACAATGTCAATAGTTGTGCTCTATTCCATTAG
Protein sequence

>Msa1198350

MENDDWDLFSIVRSCKATTFTTPAVISETPPQTLPITNTMKNNITSPQNTTPYCYDDFTFTQENSTIPITPLKPNDFIELDKLVIRSNPTKIIPTPTTTNILTPSITTTIIPTALTTTTIFPTPSTITTPTHITTNTITNTSFHGSDQNSTFSYFPTHVEQHIQPSEFTELEQWMLQFNPPTTIPISIITIPNSTTPTTITPITTAITFSTPPTTINTPTTTSPIIPTTTTMINSSANGLNQYPAVSDFSLPAEQQQVQANQNNTTISKFRREIDHELVPQQLQRSHNQLPIQLPQTSFRSLPNTKPKRPKFKSGKRKNDNQVSLVSYVGADKVSEDSWRWRKYGQKPIKGSSHPRSYYKCSSSSDCLARKQVEKIKDGDDTYEVTYLGEHNHNKPANNRNSIVDSSRYMSPKFESSVDGEARCFTNIINLGSPNAVMLQLDQPESSKARVLVGQSKIPDLKTELSPLPTLGKAKYPQHNEDSNVFSYESEIPYTEAKFIESFKEDEILIPNMTPMLEEFFLDFNNVNSCALFH*