Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1198700 | XP_039685450.1 | 84.797 | 296 | 12 | 1 | 1 | 263 | 14 | 309 | 1.86e-176 | 498 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1198700 | sp|Q9T072|BH025_ARATH | 36.765 | 136 | 83 | 2 | 98 | 231 | 135 | 269 | 5.69e-20 | 90.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1198700 | A0A072TRP6 | 94.850 | 233 | 12 | 0 | 2 | 234 | 1 | 233 | 9.28e-160 | 453 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1198700 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1198700 | MtrunA17_Chr2g0333541 | 70.068 | 294 | 37 | 3 | 2 | 262 | 1 | 276 | 2.17e-131 | 372 |
| Msa1198700 | MtrunA17_Chr8g0368371 | 92.908 | 141 | 10 | 0 | 2 | 142 | 1 | 141 | 7.10e-94 | 272 |
| Msa1198700 | MtrunA17_Chr2g0333621 | 33.775 | 302 | 141 | 8 | 2 | 254 | 20 | 311 | 3.70e-34 | 125 |
| Msa1198700 | MtrunA17_Chr2g0333641 | 34.354 | 294 | 132 | 10 | 7 | 252 | 25 | 305 | 7.73e-34 | 124 |
| Msa1198700 | MtrunA17_Chr4g0002801 | 33.648 | 318 | 138 | 9 | 7 | 254 | 16 | 330 | 1.07e-33 | 124 |
| Msa1198700 | MtrunA17_Chr8g0336681 | 39.196 | 199 | 92 | 6 | 58 | 234 | 90 | 281 | 1.01e-29 | 114 |
| Msa1198700 | MtrunA17_Chr5g0400621 | 38.660 | 194 | 79 | 4 | 98 | 257 | 144 | 331 | 4.02e-28 | 109 |
| Msa1198700 | MtrunA17_Chr4g0002781 | 33.942 | 274 | 128 | 8 | 7 | 232 | 25 | 293 | 2.49e-27 | 108 |
| Msa1198700 | MtrunA17_Chr7g0249811 | 33.808 | 281 | 116 | 10 | 12 | 242 | 27 | 287 | 5.93e-26 | 103 |
| Msa1198700 | MtrunA17_Chr4g0054581 | 35.567 | 194 | 88 | 3 | 96 | 254 | 183 | 374 | 6.39e-26 | 104 |
| Msa1198700 | MtrunA17_Chr2g0333611 | 42.581 | 155 | 68 | 5 | 87 | 234 | 21 | 161 | 3.18e-24 | 97.1 |
| Msa1198700 | MtrunA17_Chr5g0400661 | 42.177 | 147 | 68 | 4 | 102 | 234 | 137 | 280 | 5.87e-24 | 98.6 |
| Msa1198700 | MtrunA17_Chr2g0307131 | 31.606 | 193 | 94 | 3 | 96 | 254 | 163 | 351 | 1.63e-23 | 97.8 |
| Msa1198700 | MtrunA17_Chr2g0280161 | 34.783 | 184 | 78 | 5 | 104 | 250 | 168 | 346 | 6.58e-23 | 95.9 |
| Msa1198700 | MtrunA17_Chr4g0054561 | 32.420 | 219 | 118 | 7 | 48 | 243 | 74 | 285 | 8.04e-23 | 95.5 |
| Msa1198700 | MtrunA17_Chr4g0033291 | 30.534 | 262 | 120 | 10 | 41 | 256 | 80 | 325 | 1.69e-22 | 94.7 |
| Msa1198700 | MtrunA17_Chr2g0307141 | 32.386 | 176 | 82 | 2 | 113 | 254 | 183 | 355 | 3.84e-22 | 94.0 |
| Msa1198700 | MtrunA17_Chr7g0225901 | 35.417 | 144 | 90 | 1 | 91 | 234 | 66 | 206 | 4.14e-22 | 92.0 |
| Msa1198700 | MtrunA17_Chr4g0033391 | 31.795 | 195 | 90 | 5 | 96 | 256 | 132 | 317 | 5.39e-22 | 93.2 |
| Msa1198700 | MtrunA17_Chr4g0054551 | 32.420 | 219 | 118 | 7 | 48 | 243 | 74 | 285 | 1.80e-21 | 91.7 |
| Msa1198700 | MtrunA17_Chr4g0049331 | 32.161 | 199 | 94 | 4 | 92 | 252 | 110 | 305 | 4.07e-21 | 90.5 |
| Msa1198700 | MtrunA17_Chr5g0400671 | 32.843 | 204 | 106 | 7 | 59 | 242 | 88 | 280 | 1.59e-20 | 89.0 |
| Msa1198700 | MtrunA17_Chr5g0400641 | 38.333 | 120 | 71 | 1 | 116 | 235 | 1 | 117 | 1.39e-19 | 83.2 |
| Msa1198700 | MtrunA17_Chr4g0033281 | 28.936 | 235 | 110 | 7 | 58 | 250 | 98 | 317 | 7.56e-19 | 84.3 |
| Msa1198700 | MtrunA17_Chr4g0054571 | 39.869 | 153 | 78 | 6 | 94 | 238 | 132 | 278 | 1.22e-17 | 81.3 |
| Msa1198700 | MtrunA17_Chr4g0054621 | 29.767 | 215 | 102 | 5 | 79 | 254 | 133 | 337 | 1.96e-17 | 80.5 |
| Msa1198700 | MtrunA17_Chr6g0468491 | 30.208 | 192 | 96 | 4 | 97 | 254 | 122 | 309 | 8.24e-17 | 78.6 |
| Msa1198700 | MtrunA17_Chr6g0468461 | 32.847 | 137 | 74 | 3 | 98 | 234 | 159 | 277 | 8.89e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1198700 | AT4G37850.2 | 36.765 | 136 | 83 | 2 | 98 | 231 | 135 | 269 | 5.79e-21 | 90.9 |
| Msa1198700 | AT4G37850.1 | 36.765 | 136 | 83 | 2 | 98 | 231 | 135 | 269 | 5.79e-21 | 90.9 |
| Msa1198700 | AT2G22750.2 | 41.221 | 131 | 75 | 1 | 106 | 234 | 119 | 249 | 3.35e-18 | 82.8 |
| Msa1198700 | AT2G22750.1 | 41.221 | 131 | 75 | 1 | 106 | 234 | 119 | 249 | 3.77e-18 | 82.4 |
| Msa1198700 | AT2G22750.4 | 41.221 | 131 | 75 | 1 | 106 | 234 | 147 | 277 | 4.79e-18 | 82.8 |
| Msa1198700 | AT2G22750.3 | 41.221 | 131 | 75 | 1 | 106 | 234 | 147 | 277 | 4.83e-18 | 82.8 |
| Msa1198700 | AT2G22750.5 | 41.221 | 131 | 75 | 1 | 106 | 234 | 143 | 273 | 4.93e-18 | 82.4 |
| Msa1198700 | AT2G22770.1 | 34.328 | 134 | 76 | 2 | 113 | 234 | 132 | 265 | 6.23e-17 | 79.3 |
| Msa1198700 | AT2G22760.1 | 32.653 | 147 | 82 | 5 | 95 | 235 | 106 | 241 | 3.94e-16 | 76.6 |
| Msa1198700 | AT2G22760.2 | 33.099 | 142 | 88 | 4 | 95 | 235 | 106 | 241 | 4.74e-16 | 76.3 |
| Msa1198700 | AT5G57150.5 | 30.070 | 143 | 93 | 4 | 74 | 211 | 14 | 154 | 3.68e-11 | 61.6 |
| Msa1198700 | AT1G63650.3 | 28.767 | 146 | 87 | 2 | 105 | 234 | 397 | 541 | 4.38e-11 | 63.2 |
| Msa1198700 | AT1G63650.1 | 28.767 | 146 | 87 | 2 | 105 | 234 | 397 | 541 | 4.38e-11 | 63.2 |
| Msa1198700 | AT1G63650.2 | 28.767 | 146 | 87 | 2 | 105 | 234 | 397 | 541 | 4.38e-11 | 63.2 |
| Msa1198700 | AT5G57150.1 | 30.070 | 143 | 93 | 4 | 74 | 211 | 14 | 154 | 5.81e-11 | 61.6 |
| Msa1198700 | AT4G09820.1 | 29.851 | 134 | 71 | 2 | 101 | 234 | 351 | 461 | 6.49e-11 | 62.8 |
| Msa1198700 | AT5G41315.3 | 30.065 | 153 | 81 | 5 | 105 | 234 | 438 | 587 | 6.64e-11 | 62.8 |
| Msa1198700 | AT5G41315.1 | 30.065 | 153 | 81 | 5 | 105 | 234 | 433 | 582 | 7.07e-11 | 62.8 |
| Msa1198700 | AT5G41315.2 | 30.065 | 153 | 81 | 5 | 105 | 234 | 441 | 590 | 7.16e-11 | 62.8 |
Find 55 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCAGTGTCTTTGTCAATT+AGG | 0.241012 | 8_1:-50427895 | None:intergenic |
| TGTCTTTGTCAATTAGGATA+TGG | 0.244498 | 8_1:-50427889 | None:intergenic |
| GAGGTTGAAGCTAGGGTTCT+AGG | 0.308353 | 8_1:+50427968 | Msa1198700:CDS |
| CTTCTTTAATCCAGGTATAA+AGG | 0.327011 | 8_1:-50424702 | None:intergenic |
| AAGAAAGATCATAGAACTTT+CGG | 0.343414 | 8_1:+50424679 | Msa1198700:CDS |
| ACTAGGCCAGTTGTGGCAAT+AGG | 0.371153 | 8_1:-50424398 | None:intergenic |
| ACATAATGTCAGAGAGGAAT+AGG | 0.386492 | 8_1:+50424642 | Msa1198700:CDS |
| AATGGCTTTGTAGATTGATA+AGG | 0.402893 | 8_1:+50427751 | Msa1198700:intron |
| AGTGTCTCAGAAGCGCTTCT+AGG | 0.408035 | 8_1:-50424614 | None:intergenic |
| TAGGATATGGGATCTTGTTA+TGG | 0.409337 | 8_1:-50427876 | None:intergenic |
| GTCTTTGTCAATTAGGATAT+GGG | 0.412094 | 8_1:-50427888 | None:intergenic |
| AGAGACAATATAGAATTTGT+TGG | 0.427912 | 8_1:-50424494 | None:intergenic |
| GAACTTTCGGCCTTTATACC+TGG | 0.434477 | 8_1:+50424692 | Msa1198700:CDS |
| TCTGATACAGGATATCTCTA+AGG | 0.449935 | 8_1:-50424352 | None:intergenic |
| TGAAAACTGAAGAATGTTAC+GGG | 0.453225 | 8_1:+50427927 | Msa1198700:CDS |
| ATGAAAACTGAAGAATGTTA+CGG | 0.462740 | 8_1:+50427926 | Msa1198700:CDS |
| CTAGGCCAGTTGTGGCAATA+GGG | 0.464667 | 8_1:-50424397 | None:intergenic |
| GATCTTGTGGTGTCTGATAC+AGG | 0.476165 | 8_1:-50424364 | None:intergenic |
| AATATAGAATTTGTTGGTAT+CGG | 0.477242 | 8_1:-50424488 | None:intergenic |
| ATCTTCATCAAATGTGTTGT+TGG | 0.478390 | 8_1:-50424327 | None:intergenic |
| ATTGACAAAGACACTGCAAT+TGG | 0.483400 | 8_1:+50427899 | Msa1198700:CDS |
| AGTGTCCCTATTGCCACAAC+TGG | 0.491296 | 8_1:+50424392 | Msa1198700:CDS |
| AGTTGAATGTGACACCTTGA+TGG | 0.493789 | 8_1:-50424432 | None:intergenic |
| AGACTCACCTTCTTTAATCC+AGG | 0.495262 | 8_1:-50424710 | None:intergenic |
| CTTTATACCTGGATTAAAGA+AGG | 0.504848 | 8_1:+50424703 | Msa1198700:CDS |
| CACTTGTAGAGGTTGAAGCT+AGG | 0.509415 | 8_1:+50427960 | Msa1198700:CDS |
| AACTTGAAGAACGTGTGAAA+GGG | 0.515188 | 8_1:+50427810 | Msa1198700:CDS |
| GCTTCTTCGAATTTGACCCT+TGG | 0.520716 | 8_1:-50424592 | None:intergenic |
| CAACTTGAAGAACGTGTGAA+AGG | 0.521724 | 8_1:+50427809 | Msa1198700:CDS |
| ACTTGTAGAGGTTGAAGCTA+GGG | 0.522502 | 8_1:+50427961 | Msa1198700:CDS |
| AGGTTGAAGCTAGGGTTCTA+GGG | 0.524896 | 8_1:+50427969 | Msa1198700:CDS |
| TTTGCCTTTGTCGTCATCAA+CGG | 0.534333 | 8_1:+50424565 | Msa1198700:CDS |
| ACGACAAAGGCAAAGAATCA+TGG | 0.539001 | 8_1:-50424556 | None:intergenic |
| TTCATTGTGGCATGCAAGAG+GGG | 0.542951 | 8_1:+50428011 | Msa1198700:CDS |
| GAATCATGGTGTTGCTCAGT+TGG | 0.544880 | 8_1:-50424542 | None:intergenic |
| TGTTGGTATCGGTAATGAGT+TGG | 0.561174 | 8_1:-50424477 | None:intergenic |
| TCGTCATCAACGGCTAGCCA+AGG | 0.562738 | 8_1:+50424575 | Msa1198700:CDS |
| GGTATCGGTAATGAGTTGGC+TGG | 0.564211 | 8_1:-50424473 | None:intergenic |
| ATTCATTGTGGCATGCAAGA+GGG | 0.569505 | 8_1:+50428010 | Msa1198700:CDS |
| TGATAAGGTTCATGTGGTAA+CGG | 0.571985 | 8_1:+50427766 | Msa1198700:CDS |
| GTAGATTGATAAGGTTCATG+TGG | 0.584148 | 8_1:+50427760 | Msa1198700:intron |
| GATTCATTGTGGCATGCAAG+AGG | 0.605687 | 8_1:+50428009 | Msa1198700:CDS |
| AGTCAACAACTCATCCATCA+AGG | 0.612611 | 8_1:+50424418 | Msa1198700:CDS |
| CAAATACAACTTGACAGTGA+AGG | 0.613166 | 8_1:+50428629 | Msa1198700:CDS |
| GCGAAATGAATCACTTGTAG+AGG | 0.614559 | 8_1:+50427949 | Msa1198700:CDS |
| CGTCATCAACGGCTAGCCAA+GGG | 0.623288 | 8_1:+50424576 | Msa1198700:CDS |
| TGATGGATGAGTTGTTGACT+AGG | 0.626332 | 8_1:-50424415 | None:intergenic |
| GACATCAAGAAGAAAGACAC+AGG | 0.627807 | 8_1:+50427842 | Msa1198700:CDS |
| GTGTTAATCAAGATTCATTG+TGG | 0.641857 | 8_1:+50427998 | Msa1198700:CDS |
| TCATGGTGTTGCTCAGTTGG+TGG | 0.641914 | 8_1:-50424539 | None:intergenic |
| TGGCATGCAAGAGGGGATTG+TGG | 0.656870 | 8_1:+50428018 | Msa1198700:CDS |
| CTAGCCGTTGATGACGACAA+AGG | 0.683159 | 8_1:-50424569 | None:intergenic |
| GGGACACTGAATTGATCTTG+TGG | 0.685755 | 8_1:-50424377 | None:intergenic |
| GTTGTTGACTAGGCCAGTTG+TGG | 0.701059 | 8_1:-50424405 | None:intergenic |
| TAGATCACATAATGTCAGAG+AGG | 0.710986 | 8_1:+50424636 | Msa1198700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGAAAAAAACAAATTTTT+GGG | - | chr8_1:50424866-50424885 | None:intergenic | 10.0% |
| !!! | ATATACATAAAATTTGATTT+TGG | - | chr8_1:50426026-50426045 | None:intergenic | 10.0% |
| !! | TTTCTATTAAATTTCTTTAA+AGG | + | chr8_1:50426160-50426179 | Msa1198700:intron | 10.0% |
| !! | TGTATTATAACATAAATATA+GGG | - | chr8_1:50426233-50426252 | None:intergenic | 10.0% |
| !! | ATGTATTATAACATAAATAT+AGG | - | chr8_1:50426234-50426253 | None:intergenic | 10.0% |
| !!! | TTTTTTTATTTGCAAAATAT+AGG | + | chr8_1:50426430-50426449 | Msa1198700:intron | 10.0% |
| !!! | TTTTTTATTTGCAAAATATA+GGG | + | chr8_1:50426431-50426450 | Msa1198700:intron | 10.0% |
| !!! | TGTTTTTTTTTCAAAAATAT+AGG | + | chr8_1:50426624-50426643 | Msa1198700:intron | 10.0% |
| !!! | GTTTTTTTTTCAAAAATATA+GGG | + | chr8_1:50426625-50426644 | Msa1198700:intron | 10.0% |
| !!! | TCGTTTTAAATATTTTTTTT+TGG | - | chr8_1:50426674-50426693 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTACAGAAAAAAT+TGG | + | chr8_1:50427030-50427049 | Msa1198700:intron | 10.0% |
| !! | AAAAAATTAATTATGGATAA+TGG | - | chr8_1:50427071-50427090 | None:intergenic | 10.0% |
| !! | AAAAATACAATTATGAAATT+TGG | + | chr8_1:50427241-50427260 | Msa1198700:intron | 10.0% |
| !! | AAAAAATGAATTATAGTTAA+TGG | - | chr8_1:50427344-50427363 | None:intergenic | 10.0% |
| !! | GTAATATATTAAATTAAACC+TGG | + | chr8_1:50424733-50424752 | Msa1198700:intron | 15.0% |
| !!! | CAAAGAAAAAAACAAATTTT+TGG | - | chr8_1:50424867-50424886 | None:intergenic | 15.0% |
| !! | AAGCAAAGAAAAAAAATAAA+GGG | - | chr8_1:50424937-50424956 | None:intergenic | 15.0% |
| !!! | AAGTCGATATAATAAAATTT+TGG | + | chr8_1:50425704-50425723 | Msa1198700:intron | 15.0% |
| !!! | TTTTAGTAGTAGTAAATAAA+AGG | + | chr8_1:50426366-50426385 | Msa1198700:intron | 15.0% |
| !! | TTTAGTAGTAGTAAATAAAA+GGG | + | chr8_1:50426367-50426386 | Msa1198700:intron | 15.0% |
| !!! | ATATTTTACAAATGTTCATT+AGG | + | chr8_1:50426709-50426728 | Msa1198700:intron | 15.0% |
| !!! | ATACAATTATGAAATTTTGT+TGG | + | chr8_1:50427438-50427457 | Msa1198700:intron | 15.0% |
| !! | ACTAATAAATATATATGTAG+CGG | + | chr8_1:50427631-50427650 | Msa1198700:intron | 15.0% |
| !! | CTACAATAAAAATTATCTAA+TGG | + | chr8_1:50427733-50427752 | Msa1198700:intron | 15.0% |
| !!! | TATATATATATAGATTTGCT+AGG | - | chr8_1:50428419-50428438 | None:intergenic | 15.0% |
| !! | AGGGTTATAATAATTAAATT+TGG | - | chr8_1:50428536-50428555 | None:intergenic | 15.0% |
| !!! | AATATAGAATTTGTTGGTAT+CGG | - | chr8_1:50424491-50424510 | None:intergenic | 20.0% |
| !! | GAAGCAAAGAAAAAAAATAA+AGG | - | chr8_1:50424938-50424957 | None:intergenic | 20.0% |
| !! | CTATTATGAATAACTAGTAA+AGG | + | chr8_1:50425167-50425186 | Msa1198700:intron | 20.0% |
| !!! | AAGCTCATATGATAAAATTT+TGG | + | chr8_1:50425521-50425540 | Msa1198700:intron | 20.0% |
| !! | GATAAGAAATAAAAAGAAAG+AGG | + | chr8_1:50426395-50426414 | Msa1198700:intron | 20.0% |
| !! | TTCCTTCAAAAAAAAAGTTT+AGG | + | chr8_1:50426472-50426491 | Msa1198700:intron | 20.0% |
| !! | GTTAAACTAAACTAACAAAT+TGG | + | chr8_1:50426526-50426545 | Msa1198700:intron | 20.0% |
| !! | AAACAATTATCAAATTTCAC+TGG | + | chr8_1:50426762-50426781 | Msa1198700:intron | 20.0% |
| !! | TTGTTATGAGCATAAAATTA+AGG | + | chr8_1:50427511-50427530 | Msa1198700:intron | 20.0% |
| !! | TCCTATGTTTATTATATTAG+TGG | + | chr8_1:50427662-50427681 | Msa1198700:intron | 20.0% |
| !! | ACCACTAATATAATAAACAT+AGG | - | chr8_1:50427666-50427685 | None:intergenic | 20.0% |
| !! | AATACTCCTAAAATATAACT+AGG | - | chr8_1:50428318-50428337 | None:intergenic | 20.0% |
| !! | TACATATTCATAAAAACAAG+TGG | + | chr8_1:50428387-50428406 | Msa1198700:intron | 20.0% |
| !! | ACATATTCATAAAAACAAGT+GGG | + | chr8_1:50428388-50428407 | Msa1198700:intron | 20.0% |
| !! | TATAATATATGTTACAGACA+GGG | - | chr8_1:50428555-50428574 | None:intergenic | 20.0% |
| !! | TTATAATATATGTTACAGAC+AGG | - | chr8_1:50428556-50428575 | None:intergenic | 20.0% |
| ! | AGAGACAATATAGAATTTGT+TGG | - | chr8_1:50424497-50424516 | None:intergenic | 25.0% |
| ! | AAGAAAGATCATAGAACTTT+CGG | + | chr8_1:50424679-50424698 | Msa1198700:CDS | 25.0% |
| ! | AAAAATTTACTCATTTGTCC+AGG | - | chr8_1:50424754-50424773 | None:intergenic | 25.0% |
| ! | ATCTACAAGATTAAAATGTG+TGG | + | chr8_1:50424976-50424995 | Msa1198700:intron | 25.0% |
| !! | TTAATCTTTTTGCTAGTTGA+TGG | + | chr8_1:50425043-50425062 | Msa1198700:intron | 25.0% |
| !!! | ACAAAGTTCTAAAACAAGAT+TGG | - | chr8_1:50425090-50425109 | None:intergenic | 25.0% |
| ! | TATATATTCCTCAATAAGTG+TGG | - | chr8_1:50425814-50425833 | None:intergenic | 25.0% |
| !! | TCATATTGACTATCTTATAG+CGG | - | chr8_1:50425869-50425888 | None:intergenic | 25.0% |
| ! | GAACAAAAACTTTCTCATAT+CGG | - | chr8_1:50426077-50426096 | None:intergenic | 25.0% |
| ! | CACAAGAAATTAGTGATATA+GGG | + | chr8_1:50426293-50426312 | Msa1198700:intron | 25.0% |
| ! | CAAAATTTCATAGTTATCCT+TGG | - | chr8_1:50426330-50426349 | None:intergenic | 25.0% |
| ! | AAATATAGGGAATCAAGTTT+AGG | + | chr8_1:50426444-50426463 | Msa1198700:intron | 25.0% |
| !!! | AGCCTAAACTTTTTTTTTGA+AGG | - | chr8_1:50426477-50426496 | None:intergenic | 25.0% |
| ! | TCAAAAAAAAAGTTTAGGCT+AGG | + | chr8_1:50426477-50426496 | Msa1198700:intron | 25.0% |
| ! | ACATAAAATCAAGATGATCA+TGG | + | chr8_1:50426733-50426752 | Msa1198700:intron | 25.0% |
| !! | AAGGAGATCATACTTTAAAA+AGG | + | chr8_1:50426965-50426984 | Msa1198700:intron | 25.0% |
| ! | ATACAATTATGAAATTTGGC+TGG | + | chr8_1:50427245-50427264 | Msa1198700:intron | 25.0% |
| ! | CATAAAATTAAGGAGATCAT+GGG | + | chr8_1:50426956-50426975 | Msa1198700:intron | 25.0% |
| ! | CATAAAATTAAGGAGATCAT+GGG | + | chr8_1:50426956-50426975 | Msa1198700:intron | 25.0% |
| ! | TTCTATCCAATGATAATCTA+TGG | - | chr8_1:50427712-50427731 | None:intergenic | 25.0% |
| ! | ATGAAAACTGAAGAATGTTA+CGG | + | chr8_1:50427926-50427945 | Msa1198700:CDS | 25.0% |
| !!! | ATATCAAGAGTATTTCCAAA+TGG | - | chr8_1:50428103-50428122 | None:intergenic | 25.0% |
| ! | TTTAGCAACATACATTCTTA+GGG | - | chr8_1:50428366-50428385 | None:intergenic | 25.0% |
| !! | TTTTAGCAACATACATTCTT+AGG | - | chr8_1:50428367-50428386 | None:intergenic | 25.0% |
| !! | TTTGTAATTGATTCTACAGA+TGG | + | chr8_1:50428602-50428621 | Msa1198700:intron | 25.0% |
| !! | TTGTAATTGATTCTACAGAT+GGG | + | chr8_1:50428603-50428622 | Msa1198700:intron | 25.0% |
| ATCTTCATCAAATGTGTTGT+TGG | - | chr8_1:50424330-50424349 | None:intergenic | 30.0% | |
| CTTCTTTAATCCAGGTATAA+AGG | - | chr8_1:50424705-50424724 | None:intergenic | 30.0% | |
| CTTTATACCTGGATTAAAGA+AGG | + | chr8_1:50424703-50424722 | Msa1198700:CDS | 30.0% | |
| !!! | AAAACAAATTTTTGGGACAC+CGG | - | chr8_1:50424859-50424878 | None:intergenic | 30.0% |
| !!! | TGTTTTGACACTCATTGAAT+TGG | + | chr8_1:50424885-50424904 | Msa1198700:intron | 30.0% |
| GAAGCAATATTGATCAATGA+GGG | + | chr8_1:50424998-50425017 | Msa1198700:intron | 30.0% | |
| !! | TGCTAGTTGATGGATAAAAA+AGG | + | chr8_1:50425053-50425072 | Msa1198700:intron | 30.0% |
| TATTTGAATCGTGTTTGATG+TGG | + | chr8_1:50425353-50425372 | Msa1198700:intron | 30.0% | |
| GCACAAGAAATTAGTGATAT+AGG | + | chr8_1:50426292-50426311 | Msa1198700:intron | 30.0% | |
| ! | ATAGGGAATTAGTTTAACCA+AGG | + | chr8_1:50426310-50426329 | Msa1198700:intron | 30.0% |
| ! | GGATAACTATGAAATTTTGC+TGG | + | chr8_1:50426331-50426350 | Msa1198700:intron | 30.0% |
| ! | TAACAAATTGGCTCATTATG+TGG | + | chr8_1:50426538-50426557 | Msa1198700:intron | 30.0% |
| ! | GCTAGACTTTTGTGTAAAAT+TGG | + | chr8_1:50426566-50426585 | Msa1198700:intron | 30.0% |
| AAAATATAGGGAGTTAAGCT+TGG | + | chr8_1:50426637-50426656 | Msa1198700:intron | 30.0% | |
| ! | GGACGATTATCAAATTTTGT+TGG | + | chr8_1:50426986-50427005 | Msa1198700:intron | 30.0% |
| ! | CCTTAATTTTATGCGCATAA+CGG | - | chr8_1:50427206-50427225 | None:intergenic | 30.0% |
| TAACCAAAACCAAATTTCAC+GGG | - | chr8_1:50427310-50427329 | None:intergenic | 30.0% | |
| GTAACCAAAACCAAATTTCA+CGG | - | chr8_1:50427311-50427330 | None:intergenic | 30.0% | |
| ! | CCTTAATTTTATGCGCATAA+TGG | - | chr8_1:50427206-50427225 | None:intergenic | 30.0% |
| CCATTATGCGCATAAAATTA+AGG | + | chr8_1:50427396-50427415 | Msa1198700:intron | 30.0% | |
| GCATAAAATTAAGGAGATCA+TGG | + | chr8_1:50427405-50427424 | Msa1198700:intron | 30.0% | |
| GCATAAAATTAAGGAGATCA+TGG | + | chr8_1:50427405-50427424 | Msa1198700:intron | 30.0% | |
| AAATATATATGTAGCGGTGT+CGG | + | chr8_1:50427637-50427656 | Msa1198700:intron | 30.0% | |
| !! | AATGGCTTTGTAGATTGATA+AGG | + | chr8_1:50427751-50427770 | Msa1198700:intron | 30.0% |
| GTCTTTGTCAATTAGGATAT+GGG | - | chr8_1:50427891-50427910 | None:intergenic | 30.0% | |
| TGTCTTTGTCAATTAGGATA+TGG | - | chr8_1:50427892-50427911 | None:intergenic | 30.0% | |
| TGAAAACTGAAGAATGTTAC+GGG | + | chr8_1:50427927-50427946 | Msa1198700:CDS | 30.0% | |
| GTGTTAATCAAGATTCATTG+TGG | + | chr8_1:50427998-50428017 | Msa1198700:CDS | 30.0% | |
| !! | ACTCATTTTGAAAAACGAGT+GGG | + | chr8_1:50428253-50428272 | Msa1198700:intron | 30.0% |
| ! | AGCACACCTAGTTATATTTT+AGG | + | chr8_1:50428309-50428328 | Msa1198700:intron | 30.0% |
| GATAAGAATCAAACTTGAGT+TGG | - | chr8_1:50428514-50428533 | None:intergenic | 30.0% | |
| AGTGAAAAAACTAAGAGAAG+TGG | + | chr8_1:50428656-50428675 | Msa1198700:CDS | 30.0% | |
| TCTGATACAGGATATCTCTA+AGG | - | chr8_1:50424355-50424374 | None:intergenic | 35.0% | |
| TAGATCACATAATGTCAGAG+AGG | + | chr8_1:50424636-50424655 | Msa1198700:CDS | 35.0% | |
| ACATAATGTCAGAGAGGAAT+AGG | + | chr8_1:50424642-50424661 | Msa1198700:CDS | 35.0% | |
| TAGTTATCATCTACGAAGCA+CGG | + | chr8_1:50424778-50424797 | Msa1198700:intron | 35.0% | |
| ! | ATTGGTGTTCGACACAAATT+CGG | + | chr8_1:50424903-50424922 | Msa1198700:intron | 35.0% |
| GGAAGCAATATTGATCAATG+AGG | + | chr8_1:50424997-50425016 | Msa1198700:intron | 35.0% | |
| CACTAATTTCTTGTGCTTCA+TGG | - | chr8_1:50426288-50426307 | None:intergenic | 35.0% | |
| ATTAGTTCCATAGTTATCCG+TGG | + | chr8_1:50426841-50426860 | Msa1198700:intron | 35.0% | |
| ! | CCTTAATTTTATGTGCGCAA+CGG | - | chr8_1:50426949-50426968 | None:intergenic | 35.0% |
| ATTAGTTCCATAATTACCCG+TGG | + | chr8_1:50427104-50427123 | Msa1198700:intron | 35.0% | |
| CCGTTATGCGCATAAAATTA+AGG | + | chr8_1:50427203-50427222 | Msa1198700:intron | 35.0% | |
| CCAAATTTCACGGGTAATTA+TGG | - | chr8_1:50427301-50427320 | None:intergenic | 35.0% | |
| CCATAATTACCCGTGAAATT+TGG | + | chr8_1:50427298-50427317 | Msa1198700:intron | 35.0% | |
| !! | TTACCCGTGAAATTTGGTTT+TGG | + | chr8_1:50427304-50427323 | Msa1198700:intron | 35.0% |
| CAATGATAATCTATGGAGCA+TGG | - | chr8_1:50427705-50427724 | None:intergenic | 35.0% | |
| CATGCTCCATAGATTATCAT+TGG | + | chr8_1:50427703-50427722 | Msa1198700:intron | 35.0% | |
| GTAGATTGATAAGGTTCATG+TGG | + | chr8_1:50427760-50427779 | Msa1198700:intron | 35.0% | |
| TGATAAGGTTCATGTGGTAA+CGG | + | chr8_1:50427766-50427785 | Msa1198700:CDS | 35.0% | |
| AACTTGAAGAACGTGTGAAA+GGG | + | chr8_1:50427810-50427829 | Msa1198700:CDS | 35.0% | |
| TAGGATATGGGATCTTGTTA+TGG | - | chr8_1:50427879-50427898 | None:intergenic | 35.0% | |
| TTGCAGTGTCTTTGTCAATT+AGG | - | chr8_1:50427898-50427917 | None:intergenic | 35.0% | |
| ATTGACAAAGACACTGCAAT+TGG | + | chr8_1:50427899-50427918 | Msa1198700:CDS | 35.0% | |
| ! | CAAGACATTGGTAGTTGTTA+TGG | - | chr8_1:50428080-50428099 | None:intergenic | 35.0% |
| ATTTCCAAATGGCAAGACAT+TGG | - | chr8_1:50428092-50428111 | None:intergenic | 35.0% | |
| ATTACTTGCCTGAGCAATAA+TGG | - | chr8_1:50428128-50428147 | None:intergenic | 35.0% | |
| !! | CACTCATTTTGAAAAACGAG+TGG | + | chr8_1:50428252-50428271 | Msa1198700:intron | 35.0% |
| GTGCTCTAGCAAATATTTGT+AGG | - | chr8_1:50428294-50428313 | None:intergenic | 35.0% | |
| CAAATACAACTTGACAGTGA+AGG | + | chr8_1:50428629-50428648 | Msa1198700:CDS | 35.0% | |
| ! | TGATGGATGAGTTGTTGACT+AGG | - | chr8_1:50424418-50424437 | None:intergenic | 40.0% |
| AGTCAACAACTCATCCATCA+AGG | + | chr8_1:50424418-50424437 | Msa1198700:CDS | 40.0% | |
| AGTTGAATGTGACACCTTGA+TGG | - | chr8_1:50424435-50424454 | None:intergenic | 40.0% | |
| !! | TGTTGGTATCGGTAATGAGT+TGG | - | chr8_1:50424480-50424499 | None:intergenic | 40.0% |
| ACGACAAAGGCAAAGAATCA+TGG | - | chr8_1:50424559-50424578 | None:intergenic | 40.0% | |
| TTTGCCTTTGTCGTCATCAA+CGG | + | chr8_1:50424565-50424584 | Msa1198700:CDS | 40.0% | |
| AGACTCACCTTCTTTAATCC+AGG | - | chr8_1:50424713-50424732 | None:intergenic | 40.0% | |
| TTCTTTGCTTCGACATAGCT+TGG | + | chr8_1:50424947-50424966 | Msa1198700:intron | 40.0% | |
| TCTTTGCTTCGACATAGCTT+GGG | + | chr8_1:50424948-50424967 | Msa1198700:intron | 40.0% | |
| GCAATATTGATCAATGAGGG+CGG | + | chr8_1:50425001-50425020 | Msa1198700:intron | 40.0% | |
| CAATGAGGGCGGTTAAAAAA+AGG | + | chr8_1:50425012-50425031 | Msa1198700:intron | 40.0% | |
| GATGCGATGCAAACATTGAA+CGG | - | chr8_1:50425442-50425461 | None:intergenic | 40.0% | |
| TAGGGAATCAAGTTTAGGCT+TGG | + | chr8_1:50426449-50426468 | Msa1198700:intron | 40.0% | |
| CCAATTTCCACGGATAACTA+TGG | - | chr8_1:50426851-50426870 | None:intergenic | 40.0% | |
| CCATAGTTATCCGTGGAAAT+TGG | + | chr8_1:50426848-50426867 | Msa1198700:intron | 40.0% | |
| ACACGTGTAACCAATTTCCA+CGG | - | chr8_1:50426861-50426880 | None:intergenic | 40.0% | |
| CCGTTGCGCACATAAAATTA+AGG | + | chr8_1:50426946-50426965 | Msa1198700:intron | 40.0% | |
| CCAAATTCCACGGGTAATTA+TGG | - | chr8_1:50427114-50427133 | None:intergenic | 40.0% | |
| CCATAATTACCCGTGGAATT+TGG | + | chr8_1:50427111-50427130 | Msa1198700:intron | 40.0% | |
| ACAGTGTAACCAAATTCCAC+GGG | - | chr8_1:50427123-50427142 | None:intergenic | 40.0% | |
| CACAGTGTAACCAAATTCCA+CGG | - | chr8_1:50427124-50427143 | None:intergenic | 40.0% | |
| !! | TATTAGTGGTGTCGTCATGT+CGG | + | chr8_1:50427676-50427695 | Msa1198700:intron | 40.0% |
| CAACTTGAAGAACGTGTGAA+AGG | + | chr8_1:50427809-50427828 | Msa1198700:CDS | 40.0% | |
| GACATCAAGAAGAAAGACAC+AGG | + | chr8_1:50427842-50427861 | Msa1198700:CDS | 40.0% | |
| GCGAAATGAATCACTTGTAG+AGG | + | chr8_1:50427949-50427968 | Msa1198700:CDS | 40.0% | |
| ACTTGTAGAGGTTGAAGCTA+GGG | + | chr8_1:50427961-50427980 | Msa1198700:CDS | 40.0% | |
| ATTCATTGTGGCATGCAAGA+GGG | + | chr8_1:50428010-50428029 | Msa1198700:CDS | 40.0% | |
| GAGATGAAGAAGTTGAAGCT+GGG | - | chr8_1:50428056-50428075 | None:intergenic | 40.0% | |
| AGAGATGAAGAAGTTGAAGC+TGG | - | chr8_1:50428057-50428076 | None:intergenic | 40.0% | |
| ACTACCAATGTCTTGCCATT+TGG | + | chr8_1:50428085-50428104 | Msa1198700:intron | 40.0% | |
| TGATATCGCCATTATTGCTC+AGG | + | chr8_1:50428117-50428136 | Msa1198700:intron | 40.0% | |
| AAGTCGTTGAATACACCTTG+AGG | + | chr8_1:50428214-50428233 | Msa1198700:intron | 40.0% | |
| GATCTTGTGGTGTCTGATAC+AGG | - | chr8_1:50424367-50424386 | None:intergenic | 45.0% | |
| GGGACACTGAATTGATCTTG+TGG | - | chr8_1:50424380-50424399 | None:intergenic | 45.0% | |
| !! | GAATCATGGTGTTGCTCAGT+TGG | - | chr8_1:50424545-50424564 | None:intergenic | 45.0% |
| GCTTCTTCGAATTTGACCCT+TGG | - | chr8_1:50424595-50424614 | None:intergenic | 45.0% | |
| GAACTTTCGGCCTTTATACC+TGG | + | chr8_1:50424692-50424711 | Msa1198700:CDS | 45.0% | |
| !! | CTCTAGGATTAGACATGTCG+TGG | + | chr8_1:50424805-50424824 | Msa1198700:intron | 45.0% |
| ! | TCGTGGTGTCAGACATATGT+CGG | + | chr8_1:50424822-50424841 | Msa1198700:intron | 45.0% |
| TATGTCGGACCTACTTAGAC+CGG | + | chr8_1:50424837-50424856 | Msa1198700:intron | 45.0% | |
| CACTTGCACCACACTTATTG+AGG | + | chr8_1:50425803-50425822 | Msa1198700:intron | 45.0% | |
| CACTTGTAGAGGTTGAAGCT+AGG | + | chr8_1:50427960-50427979 | Msa1198700:CDS | 45.0% | |
| AGGTTGAAGCTAGGGTTCTA+GGG | + | chr8_1:50427969-50427988 | Msa1198700:CDS | 45.0% | |
| GATTCATTGTGGCATGCAAG+AGG | + | chr8_1:50428009-50428028 | Msa1198700:CDS | 45.0% | |
| TTCATTGTGGCATGCAAGAG+GGG | + | chr8_1:50428011-50428030 | Msa1198700:CDS | 45.0% | |
| !! | AAAAAATTAATTATGAATAA+TGG | - | chr8_1:50426889-50426908 | None:intergenic | 5.0% |
| !!! | GTTTTTTAAAAAATTAATTA+TGG | - | chr8_1:50427078-50427097 | None:intergenic | 5.0% |
| AGTGTCCCTATTGCCACAAC+TGG | + | chr8_1:50424392-50424411 | Msa1198700:CDS | 50.0% | |
| CTAGGCCAGTTGTGGCAATA+GGG | - | chr8_1:50424400-50424419 | None:intergenic | 50.0% | |
| ACTAGGCCAGTTGTGGCAAT+AGG | - | chr8_1:50424401-50424420 | None:intergenic | 50.0% | |
| ! | GTTGTTGACTAGGCCAGTTG+TGG | - | chr8_1:50424408-50424427 | None:intergenic | 50.0% |
| !! | GGTATCGGTAATGAGTTGGC+TGG | - | chr8_1:50424476-50424495 | None:intergenic | 50.0% |
| !! | TCATGGTGTTGCTCAGTTGG+TGG | - | chr8_1:50424542-50424561 | None:intergenic | 50.0% |
| !! | CTAGCCGTTGATGACGACAA+AGG | - | chr8_1:50424572-50424591 | None:intergenic | 50.0% |
| !! | AGTGTCTCAGAAGCGCTTCT+AGG | - | chr8_1:50424617-50424636 | None:intergenic | 50.0% |
| TACGAAGCACGGACATCTCT+AGG | + | chr8_1:50424789-50424808 | Msa1198700:intron | 50.0% | |
| ! | TTTGGGACACCGGTCTAAGT+AGG | - | chr8_1:50424849-50424868 | None:intergenic | 50.0% |
| GAGGTTGAAGCTAGGGTTCT+AGG | + | chr8_1:50427968-50427987 | Msa1198700:CDS | 50.0% | |
| GTGTGTGTGTGTACACACAC+TGG | - | chr8_1:50428153-50428172 | None:intergenic | 50.0% | |
| TTGAATACACCTTGAGGCGC+AGG | + | chr8_1:50428220-50428239 | Msa1198700:intron | 50.0% | |
| ! | TTTTAGCAACCTGCGCCTCA+AGG | - | chr8_1:50428232-50428251 | None:intergenic | 50.0% |
| ! | TCGTCATCAACGGCTAGCCA+AGG | + | chr8_1:50424575-50424594 | Msa1198700:CDS | 55.0% |
| ! | CGTCATCAACGGCTAGCCAA+GGG | + | chr8_1:50424576-50424595 | Msa1198700:CDS | 55.0% |
| TGGCATGCAAGAGGGGATTG+TGG | + | chr8_1:50428018-50428037 | Msa1198700:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 50424302 | 50428713 | 50424302 | ID=Msa1198700;Name=Msa1198700 |
| chr8_1 | mRNA | 50424302 | 50428713 | 50424302 | ID=Msa1198700-mRNA-1;Parent=Msa1198700;Name=Msa1198700-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|3|0|263 |
| chr8_1 | exon | 50424302 | 50424724 | 50424302 | ID=Msa1198700-mRNA-1:exon:15841;Parent=Msa1198700-mRNA-1 |
| chr8_1 | exon | 50427764 | 50428039 | 50427764 | ID=Msa1198700-mRNA-1:exon:15842;Parent=Msa1198700-mRNA-1 |
| chr8_1 | exon | 50428621 | 50428713 | 50428621 | ID=Msa1198700-mRNA-1:exon:15843;Parent=Msa1198700-mRNA-1 |
| chr8_1 | CDS | 50424302 | 50424724 | 50424302 | ID=Msa1198700-mRNA-1:cds;Parent=Msa1198700-mRNA-1 |
| chr8_1 | CDS | 50427764 | 50428039 | 50427764 | ID=Msa1198700-mRNA-1:cds;Parent=Msa1198700-mRNA-1 |
| chr8_1 | CDS | 50428621 | 50428713 | 50428621 | ID=Msa1198700-mRNA-1:cds;Parent=Msa1198700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
