AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1198960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1198960 MtrunA17_Chr8g0368721 88.346 266 31 0 132 397 47 312 5.52e-93 287
Msa1198960 MtrunA17_Chr8g0368721 74.860 179 36 3 1 176 1 173 5.18e-30 120
Msa1198960 MtrunA17_Chr6g0470151 47.678 323 136 6 133 443 56 357 7.67e-58 197
Msa1198960 MtrunA17_Chr6g0470151 41.791 268 116 8 1 238 1 258 1.01e-21 97.4
Msa1198960 MtrunA17_Chr2g0289181 45.064 233 67 2 403 574 1 233 5.17e-57 191
Msa1198960 MtrunA17_Chr8g0366921 50.342 292 130 3 120 397 30 320 4.51e-50 175
Msa1198960 MtrunA17_Chr8g0366921 47.584 269 96 6 1 239 1 254 1.38e-34 133
Msa1198960 MtrunA17_Chr7g0266621 45.693 267 134 3 131 397 47 302 1.32e-30 121
Msa1198960 MtrunA17_Chr7g0266621 72.289 83 23 0 1 83 1 83 3.77e-21 94.4
Msa1198960 MtrunA17_Chr1g0202461 52.525 99 45 2 393 491 239 335 1.49e-27 114
Msa1198960 MtrunA17_Chr2g0293901 56.198 121 49 2 135 255 54 170 3.12e-26 106
Msa1198960 MtrunA17_Chr2g0293901 46.927 179 80 6 1 173 1 170 5.57e-22 94.4
Msa1198960 MtrunA17_Chr8g0348311 46.939 98 49 2 393 490 134 228 3.52e-24 103
Msa1198960 MtrunA17_Chr7g0248691 47.917 96 49 1 395 490 133 227 7.18e-24 102
Msa1198960 MtrunA17_Chr8g0387501 56.944 72 30 1 417 488 130 200 4.70e-21 93.6
Msa1198960 MtrunA17_Chr2g0293481 43.363 113 52 3 396 498 238 348 4.90e-20 93.6
Msa1198960 MtrunA17_Chr4g0053281 51.471 68 33 0 417 484 267 334 5.36e-19 88.6
Msa1198960 MtrunA17_Chr3g0139021 43.750 96 53 1 387 481 284 379 1.68e-18 87.8
Msa1198960 MtrunA17_Chr5g0401821 51.471 68 33 0 417 484 200 267 2.24e-18 85.5
Msa1198960 MtrunA17_Chr4g0071521 56.716 67 28 1 412 478 242 307 2.72e-18 86.3
Msa1198960 MtrunA17_Chr2g0319961 56.061 66 29 0 411 476 75 140 4.64e-18 84.3
Msa1198960 MtrunA17_Chr8g0379461 53.968 63 29 0 414 476 74 136 7.25e-18 83.6
Msa1198960 MtrunA17_Chr1g0184691 57.627 59 25 0 417 475 294 352 2.68e-17 84.0
Msa1198960 MtrunA17_Chr1g0147881 47.826 69 36 0 417 485 263 331 5.61e-17 82.4
Msa1198960 MtrunA17_Chr2g0284321 53.968 63 29 0 414 476 33 95 8.23e-17 79.7
Msa1198960 MtrunA17_Chr7g0270051 46.835 79 42 0 417 495 54 132 8.79e-17 80.9
Msa1198960 MtrunA17_Chr7g0228941 54.098 61 28 0 417 477 53 113 1.45e-16 76.3
Msa1198960 MtrunA17_Chr7g0218081 49.275 69 33 2 412 480 224 290 2.70e-15 79.0
Msa1198960 MtrunA17_Chr7g0218081 47.761 67 34 1 416 482 410 475 8.50e-15 77.4
Msa1198960 MtrunA17_Chr7g0263531 50.000 76 36 2 412 487 185 258 3.95e-15 77.8
Msa1198960 MtrunA17_Chr7g0263531 42.574 101 43 4 393 479 324 423 1.12e-14 76.6
Msa1198960 MtrunA17_Chr7g0266611 57.576 66 28 0 471 536 2 67 6.13e-15 72.8
Msa1198960 MtrunA17_Chr3g0079691 49.315 73 35 2 414 486 278 348 1.27e-14 77.0
Msa1198960 MtrunA17_Chr3g0079691 43.478 69 38 1 416 484 495 562 3.67e-13 72.4
Msa1198960 MtrunA17_Chr7g0243891 50.000 82 36 3 399 480 202 278 2.30e-14 75.9
Msa1198960 MtrunA17_Chr6g0470161 43.299 97 48 2 485 574 24 120 3.34e-14 69.3
Msa1198960 MtrunA17_Chr7g0249311 39.048 105 49 3 416 520 392 481 4.00e-14 75.5
Msa1198960 MtrunA17_Chr7g0249311 44.304 79 42 2 406 484 169 245 6.52e-14 74.7
Msa1198960 MtrunA17_Chr8g0387981 41.379 87 45 2 391 471 103 189 5.10e-14 73.9
Msa1198960 MtrunA17_Chr5g0443131 50.000 62 30 1 416 477 157 217 6.10e-14 73.2
Msa1198960 MtrunA17_Chr5g0418191 46.269 67 35 1 416 482 320 385 1.03e-13 73.6
Msa1198960 MtrunA17_Chr5g0418191 35.971 139 75 6 412 547 147 274 1.52e-13 72.8
Msa1198960 MtrunA17_Chr4g0042831 43.750 80 44 1 416 495 278 356 1.17e-13 73.2
Msa1198960 MtrunA17_Chr4g0042831 42.647 68 38 1 409 476 138 204 1.99e-11 66.2
Msa1198960 MtrunA17_Chr4g0074001 36.111 108 56 3 381 476 312 418 1.56e-13 73.2
Msa1198960 MtrunA17_Chr1g0194481 44.286 70 38 1 416 485 158 226 2.85e-13 71.2
Msa1198960 MtrunA17_Chr4g0051881 49.180 61 30 1 416 476 178 237 6.42e-13 70.1
Msa1198960 MtrunA17_Chr7g0270191 38.542 96 57 2 389 484 119 212 7.30e-13 69.7
Msa1198960 MtrunA17_Chr3g0106491 50.000 66 31 2 415 480 197 260 7.46e-13 71.2
Msa1198960 MtrunA17_Chr3g0106491 43.548 62 34 1 416 477 365 425 7.40e-11 64.7
Msa1198960 MtrunA17_Chr3g0126391 38.372 86 44 3 394 471 106 190 7.82e-13 70.1
Msa1198960 MtrunA17_Chr4g0004911 50.725 69 32 2 409 476 176 243 1.04e-12 70.5
Msa1198960 MtrunA17_Chr4g0004911 44.262 61 33 1 416 476 336 395 4.62e-12 68.6
Msa1198960 MtrunA17_Chr3g0101131 41.791 67 38 1 416 482 415 480 1.09e-12 70.9
Msa1198960 MtrunA17_Chr3g0101131 48.529 68 33 2 409 476 236 301 2.43e-12 69.7
Msa1198960 MtrunA17_Chr5g0445311 41.791 67 38 1 416 482 364 429 1.12e-12 70.5
Msa1198960 MtrunA17_Chr5g0445311 48.438 64 31 2 413 476 197 258 7.69e-12 68.2
Msa1198960 MtrunA17_Chr3g0129321 49.206 63 29 3 416 477 118 178 1.21e-12 67.4
Msa1198960 MtrunA17_Chr7g0249301 47.619 63 32 1 416 478 292 353 1.84e-12 69.3
Msa1198960 MtrunA17_Chr7g0249301 47.541 61 30 2 416 476 62 120 2.18e-11 65.9
Msa1198960 MtrunA17_Chr5g0432161 53.226 62 27 2 415 476 243 302 2.63e-12 69.7
Msa1198960 MtrunA17_Chr5g0432161 44.444 63 34 1 416 478 421 482 3.75e-12 68.9
Msa1198960 MtrunA17_Chr4g0068541 38.571 70 42 1 416 485 208 276 3.26e-12 68.6
Msa1198960 MtrunA17_Chr8g0383251 40.000 90 48 4 391 476 80 167 5.03e-12 65.1
Msa1198960 MtrunA17_Chr2g0294231 44.615 65 35 1 416 480 203 266 6.48e-12 67.4
Msa1198960 MtrunA17_Chr2g0302391 41.667 60 35 0 417 476 212 271 1.08e-11 67.0
Msa1198960 MtrunA17_Chr3g0136961 41.772 79 43 1 416 494 138 213 1.19e-11 65.9
Msa1198960 MtrunA17_Chr7g0238921 48.387 62 25 2 415 473 123 180 1.62e-11 65.9
Msa1198960 MtrunA17_Chr8g0347251 38.384 99 51 3 383 471 95 193 1.98e-11 65.9
Msa1198960 MtrunA17_Chr4g0001361 41.026 78 45 1 416 492 162 239 3.67e-11 64.7
Msa1198960 MtrunA17_Chr5g0418781 40.000 85 49 2 389 473 98 180 6.48e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1198960 AT5G52830.1 53.535 99 44 2 393 491 143 239 3.88e-28 115
Msa1198960 AT4G01250.1 37.584 149 82 5 344 490 62 201 7.78e-26 108
Msa1198960 AT4G23550.1 47.872 94 48 1 400 493 124 216 1.28e-22 99.4
Msa1198960 AT5G45050.4 51.613 93 43 2 393 485 1019 1109 4.07e-21 98.6
Msa1198960 AT5G45050.1 51.613 93 43 2 393 485 1158 1248 4.47e-21 98.6
Msa1198960 AT5G45050.2 51.613 93 43 2 393 485 1130 1220 4.89e-21 98.6
Msa1198960 AT4G31550.2 35.766 137 75 2 358 481 174 310 4.42e-19 89.0
Msa1198960 AT4G31550.1 52.308 65 31 0 417 481 247 311 7.75e-19 88.2
Msa1198960 AT2G34830.1 55.072 69 30 1 417 485 216 283 9.40e-19 89.4
Msa1198960 AT2G34830.2 55.072 69 30 1 417 485 225 292 1.09e-18 89.4
Msa1198960 AT1G30650.1 55.072 69 30 1 417 485 218 285 1.12e-18 89.4
Msa1198960 AT2G23320.1 56.140 57 25 0 417 473 241 297 5.20e-18 85.9
Msa1198960 AT2G24570.1 49.231 65 33 0 417 481 244 308 8.88e-18 85.1
Msa1198960 AT4G24240.1 48.810 84 38 2 394 473 256 338 2.67e-17 84.3
Msa1198960 AT5G28650.1 51.515 66 32 0 417 482 263 328 2.70e-17 84.0
Msa1198960 AT1G29280.1 42.424 99 53 1 382 476 36 134 3.29e-17 82.4
Msa1198960 AT3G04670.1 51.515 66 32 0 417 482 263 328 3.94e-17 83.2
Msa1198960 AT3G58710.2 51.471 68 33 0 414 481 68 135 6.91e-17 81.6
Msa1198960 AT3G58710.1 51.471 68 33 0 414 481 69 136 7.02e-17 81.6
Msa1198960 AT3G01080.3 46.154 78 37 3 412 489 201 273 1.53e-16 81.6
Msa1198960 AT3G01080.2 46.154 78 37 3 412 489 201 273 5.92e-16 80.9
Msa1198960 AT3G01080.2 47.541 61 31 1 416 476 344 403 1.07e-13 73.9
Msa1198960 AT3G01080.1 46.154 78 37 3 412 489 163 235 7.42e-16 80.5
Msa1198960 AT3G01080.1 47.541 61 31 1 416 476 306 365 1.56e-13 73.2
Msa1198960 AT2G30590.1 54.237 59 27 0 417 475 314 372 2.38e-15 78.6
Msa1198960 AT2G38470.1 50.000 80 36 3 397 476 167 242 7.71e-15 77.8
Msa1198960 AT2G38470.1 44.444 63 34 1 416 478 362 423 2.30e-12 70.1
Msa1198960 AT5G07100.1 37.273 110 62 3 415 518 116 224 2.11e-14 74.7
Msa1198960 AT5G07100.1 40.580 69 40 1 416 484 234 301 2.23e-12 68.6
Msa1198960 AT2G03340.1 47.761 67 34 1 416 482 415 480 2.79e-14 75.9
Msa1198960 AT2G03340.1 48.571 70 34 2 412 481 246 313 1.19e-13 73.9
Msa1198960 AT2G47260.1 37.391 115 66 3 389 499 148 260 4.69e-14 73.9
Msa1198960 AT1G13960.1 40.816 98 48 4 397 489 205 297 5.91e-14 75.1
Msa1198960 AT1G13960.1 47.541 61 31 1 416 476 409 468 6.74e-13 71.6
Msa1198960 AT3G62340.1 40.476 84 48 2 416 499 118 199 9.24e-14 72.4
Msa1198960 AT5G56270.1 49.296 71 34 2 414 484 271 339 1.16e-13 74.3
Msa1198960 AT5G56270.1 44.444 63 34 1 416 478 487 548 2.78e-12 70.1
Msa1198960 AT5G07100.2 37.273 110 62 3 415 518 23 131 1.17e-13 70.9
Msa1198960 AT5G07100.2 44.262 61 33 1 416 476 141 200 8.35e-12 65.5
Msa1198960 AT5G07100.4 37.273 110 62 3 415 518 23 131 1.17e-13 70.9
Msa1198960 AT5G07100.4 44.262 61 33 1 416 476 141 200 8.35e-12 65.5
Msa1198960 AT5G07100.5 37.273 110 62 3 415 518 23 131 1.17e-13 70.9
Msa1198960 AT5G07100.5 44.262 61 33 1 416 476 141 200 8.35e-12 65.5
Msa1198960 AT5G07100.3 37.273 110 62 3 415 518 23 131 1.17e-13 70.9
Msa1198960 AT5G07100.3 44.262 61 33 1 416 476 141 200 8.35e-12 65.5
Msa1198960 AT4G30935.1 35.780 109 57 3 380 476 283 390 1.20e-13 73.9
Msa1198960 AT1G13960.2 47.436 78 36 3 412 489 72 144 1.45e-13 72.8
Msa1198960 AT1G13960.2 47.541 61 31 1 416 476 256 315 1.55e-12 69.7
Msa1198960 AT4G26440.1 45.946 74 38 2 414 487 176 247 1.92e-13 73.6
Msa1198960 AT4G26440.1 37.805 82 50 1 416 497 372 452 4.93e-11 65.9
Msa1198960 AT2G21900.1 39.362 94 52 2 389 478 78 170 3.11e-13 69.3
Msa1198960 AT2G30250.1 50.000 60 29 1 417 476 329 387 6.67e-13 71.2
Msa1198960 AT2G30250.1 48.387 62 30 2 415 476 165 224 6.01e-12 68.2
Msa1198960 AT2G37260.1 38.095 84 48 2 393 473 323 405 1.71e-12 70.1
Msa1198960 AT2G37260.1 50.000 66 31 2 412 477 161 224 1.01e-11 67.8
Msa1198960 AT1G64000.1 38.095 84 48 3 391 473 90 170 1.88e-12 67.0
Msa1198960 AT2G46400.1 44.318 88 44 3 389 471 74 161 2.55e-12 68.2
Msa1198960 AT2G37260.3 38.095 84 48 2 393 473 243 325 2.73e-12 68.9
Msa1198960 AT2G37260.3 49.254 67 32 2 412 478 81 145 1.69e-11 66.6
Msa1198960 AT5G43290.1 55.172 58 25 1 416 473 114 170 2.86e-12 67.8
Msa1198960 AT2G37260.2 38.095 84 48 2 393 473 241 323 3.08e-12 68.6
Msa1198960 AT2G37260.2 49.254 67 32 2 412 478 79 143 1.86e-11 66.2
Msa1198960 AT5G41570.1 40.000 85 48 3 391 473 71 154 3.69e-12 65.5
Msa1198960 AT4G26640.7 39.423 104 56 5 415 515 170 269 3.91e-12 69.3
Msa1198960 AT4G26640.7 40.984 61 35 1 416 476 341 400 3.34e-11 66.2
Msa1198960 AT1G55600.1 46.970 66 33 2 411 476 303 366 3.96e-12 69.3
Msa1198960 AT2G40740.1 36.957 92 53 2 385 471 139 230 4.37e-12 67.8
Msa1198960 AT2G04880.2 48.333 60 30 1 417 476 284 342 4.41e-12 68.9
Msa1198960 AT2G04880.1 48.333 60 30 1 417 476 308 366 4.55e-12 68.9
Msa1198960 AT4G26640.2 39.423 104 56 5 415 515 210 309 4.85e-12 68.9
Msa1198960 AT4G26640.2 40.984 61 35 1 416 476 381 440 3.76e-11 66.2
Msa1198960 AT2G40740.3 36.957 92 53 2 385 471 148 239 5.75e-12 67.4
Msa1198960 AT4G26640.1 39.423 104 56 5 415 515 138 237 6.60e-12 68.6
Msa1198960 AT4G26640.1 40.984 61 35 1 416 476 309 368 4.62e-11 65.9
Msa1198960 AT2G44745.1 37.374 99 58 4 377 473 105 201 7.92e-12 65.5
Msa1198960 AT1G69310.4 39.535 86 50 2 389 474 121 204 9.67e-12 66.6
Msa1198960 AT1G69310.2 39.535 86 50 2 389 474 121 204 9.67e-12 66.6
Msa1198960 AT1G69310.1 39.535 86 50 2 389 474 121 204 9.67e-12 66.6
Msa1198960 AT4G26640.5 39.423 104 56 5 415 515 34 133 1.07e-11 67.4
Msa1198960 AT4G26640.5 40.984 61 35 1 416 476 205 264 4.99e-11 65.1
Msa1198960 AT4G26640.6 39.423 104 56 5 415 515 34 133 1.07e-11 67.4
Msa1198960 AT4G26640.6 40.984 61 35 1 416 476 205 264 4.99e-11 65.1
Msa1198960 AT4G26640.4 39.423 104 56 5 415 515 34 133 1.07e-11 67.4
Msa1198960 AT4G26640.4 40.984 61 35 1 416 476 205 264 4.99e-11 65.1
Msa1198960 AT4G26640.3 39.423 104 56 5 415 515 34 133 1.07e-11 67.4
Msa1198960 AT4G26640.3 40.984 61 35 1 416 476 205 264 4.99e-11 65.1
Msa1198960 AT1G29860.1 43.478 69 38 1 416 484 136 203 1.45e-11 65.9
Msa1198960 AT4G18170.1 41.026 78 44 2 396 473 153 228 1.48e-11 66.2
Msa1198960 AT5G49520.1 44.828 58 31 1 416 473 221 277 2.43e-11 66.2
Msa1198960 AT1G80840.1 41.935 62 36 0 416 477 146 207 2.58e-11 65.5
Msa1198960 AT5G46350.1 46.552 58 30 1 416 473 183 239 5.73e-11 64.7
Msa1198960 AT5G45260.1 46.774 62 31 1 417 476 1209 1270 6.48e-11 66.2

Find 173 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCGGTTTAAGTGGGGTAAT+TGG 0.192042 8_1:-50770597 None:intergenic
TTCGGTTTAAGTGGGGTAAT+TGG 0.192042 8_1:-50770849 None:intergenic
ACTACAAATGTAGAAGTTTC+TGG 0.203501 8_1:+50772747 Msa1198960:CDS
TCGGTTTAAGTGGGGTAATT+GGG 0.264814 8_1:-50770596 None:intergenic
TCGGTTTAAGTGGGGTAATT+GGG 0.264814 8_1:-50770848 None:intergenic
GGTAGTGATGGTTGGGATAC+TGG 0.266171 8_1:-50770943 None:intergenic
GGAAGGGATGGTGGTGCTTG+AGG 0.267804 8_1:-50770736 None:intergenic
GAAGGGATGGTGGTGCTTGA+GGG 0.285161 8_1:-50770735 None:intergenic
TGGATGTGGAGACCCTTTAA+TGG 0.287579 8_1:-50771776 None:intergenic
TGGAGGTGGAGTTTCAAAAT+TGG 0.294278 8_1:-50770478 None:intergenic
AACGGCAACATCGCCATATT+AGG 0.297130 8_1:-50772974 None:intergenic
AGGGAGTAGGAGTAGTGGTT+GGG 0.321158 8_1:-50770968 None:intergenic
TGGGGCTGAGTTATTCTCTT+TGG 0.321183 8_1:-50770577 None:intergenic
TGGGGCTGAGTTATTCTCTT+TGG 0.321183 8_1:-50770829 None:intergenic
TAGTCTTTGATGACTTGTTT+TGG 0.324581 8_1:-50772895 None:intergenic
TAGTGAAGATGGTGGTAGTG+GGG 0.325049 8_1:-50771199 None:intergenic
AAACTTGGAATCGCCTAATA+TGG 0.330985 8_1:+50772961 Msa1198960:CDS
CTCCAATGGACAATGATGAT+TGG 0.334060 8_1:+50770400 None:intergenic
CAAAATTTAAATCAAGAAAA+AGG 0.335426 8_1:+50771573 Msa1198960:CDS
GAAGGGATGGTGGTGCTTGA+GGG 0.338016 8_1:-50770987 None:intergenic
TTGAGGGGATATGATGTTAT+TGG 0.344141 8_1:-50770517 None:intergenic
GTAGTTGATTGCGCTTTCTC+AGG 0.345960 8_1:-50771493 None:intergenic
TAGAAGTTTCTGGGATTGTT+TGG 0.352859 8_1:+50772757 Msa1198960:CDS
ATGAAATCATTCGGTTTAAG+TGG 0.356968 8_1:-50770606 None:intergenic
ATGAAATCATTCGGTTTAAG+TGG 0.356968 8_1:-50770858 None:intergenic
GTTGTAGGGATAGTGGTTGT+AGG 0.360959 8_1:-50771224 None:intergenic
GGATATGATGTTATTGGTTG+TGG 0.366736 8_1:-50770511 None:intergenic
ACTTATGTCGTGACATATAA+AGG 0.369771 8_1:+50772818 Msa1198960:CDS
TACACTTCATTGTTACGGTT+TGG 0.377794 8_1:-50771386 None:intergenic
AGTTCTTACCGATACGTCTA+TGG 0.380944 8_1:+50773024 Msa1198960:CDS
AGGGATGGTGGTGCTTGAGG+GGG 0.385352 8_1:-50770733 None:intergenic
GGATGTGGAGACCCTTTAAT+GGG 0.385486 8_1:-50771775 None:intergenic
TTGCGATTTCACTCCGGGCA+TGG 0.385512 8_1:-50771421 None:intergenic
GGAAGGGATGGTGGTGCTTG+AGG 0.390413 8_1:-50770988 None:intergenic
GTTGGGGTGGTAGTGATGGT+TGG 0.392907 8_1:-50770699 None:intergenic
GTTGGGGTGGTAGTGATGGT+TGG 0.392907 8_1:-50770951 None:intergenic
GTTGTGGTGGTTAGAGTTGG+AGG 0.394427 8_1:-50770495 None:intergenic
GGTAGTGAAGATGGTGGTAG+TGG 0.395152 8_1:-50771201 None:intergenic
AGGGTGGCGAATGTGGTTGT+AGG 0.396346 8_1:-50771239 None:intergenic
TTTGTTCGAGGTAGTAGAAA+TGG 0.396886 8_1:-50771515 None:intergenic
AAGGGATGGTGGTGCTTGAG+GGG 0.398824 8_1:-50770734 None:intergenic
GTTGGGATACTAGTGATAGT+AGG 0.406363 8_1:-50770681 None:intergenic
AAACATGACACCTATGTTAG+AGG 0.407154 8_1:+50773087 Msa1198960:CDS
AGAGGTGGGGATAGTGGTGT+TGG 0.411378 8_1:-50771159 None:intergenic
TCCAATGGACAATGATGATT+GGG 0.413894 8_1:+50770401 None:intergenic
TTGGTTGTGGTGGTTAGAGT+TGG 0.415176 8_1:-50770498 None:intergenic
GTTGGGATACTGGTGATAGT+AGG 0.415858 8_1:-50770933 None:intergenic
GTGGTGATGGTAGGTATGAT+AGG 0.418388 8_1:-50771275 None:intergenic
TTGGGATACTAGTGATAGTA+GGG 0.418845 8_1:-50770680 None:intergenic
TTGGGGTGGTAGTGATGGTT+GGG 0.421087 8_1:-50770698 None:intergenic
TTGGGGTGGTAGTGATGGTT+GGG 0.421087 8_1:-50770950 None:intergenic
CTACAAATGTAGAAGTTTCT+GGG 0.423709 8_1:+50772748 Msa1198960:CDS
GAGGGAGTAGGAGTAGTGGT+TGG 0.426227 8_1:-50770969 None:intergenic
GGGGTGGGGATAGTTGTTGT+TGG 0.434582 8_1:-50770912 None:intergenic
GATGGTAGAGGTGGGGATAG+TGG 0.437887 8_1:-50771165 None:intergenic
AGGGGTTGTTGCGGAATTGA+TGG 0.440075 8_1:-50771473 None:intergenic
CGCTTTCTCAGGGGTTGTTG+CGG 0.440310 8_1:-50771482 None:intergenic
AAACATACACTTCATTGTTA+CGG 0.441847 8_1:-50771391 None:intergenic
GGTAATGTGGGAAGGGATGG+TGG 0.443946 8_1:-50770745 None:intergenic
GGTAATGTGGGAAGGGATGG+TGG 0.443946 8_1:-50770997 None:intergenic
GATAGTAGGGGTGGGGATAG+TGG 0.445875 8_1:-50770667 None:intergenic
AGTGGTTGGGGTGGTAGTGA+TGG 0.446309 8_1:-50770703 None:intergenic
AGTGGTTGGGGTGGTAGTGA+TGG 0.446309 8_1:-50770955 None:intergenic
TCAAGCTCTATGAAATCATT+CGG 0.447306 8_1:-50770615 None:intergenic
TCAAGCTCTATGAAATCATT+CGG 0.447306 8_1:-50770867 None:intergenic
ACTTGAGCCTCGTTGCTCTC+TGG 0.448771 8_1:-50773004 None:intergenic
TATGTTAGAGGATCTCTTGA+TGG 0.450163 8_1:+50773099 Msa1198960:CDS
GGGAGTAGGAGTAGTGGTTG+GGG 0.451422 8_1:-50770967 None:intergenic
TTGGGATACTGGTGATAGTA+GGG 0.453252 8_1:-50770932 None:intergenic
GAGGTGGGGATAGTGGTGTT+GGG 0.454610 8_1:-50771158 None:intergenic
ACGAACCTTCAGAAGATTCA+TGG 0.454895 8_1:+50771728 Msa1198960:CDS
GGGGTGGGGATAGTGGTTGT+TGG 0.455018 8_1:-50770660 None:intergenic
TGTTGGGAAATTAGAAAAGA+TGG 0.456325 8_1:-50771066 None:intergenic
TTAATCAGAACTCCGTTGTT+GGG 0.460189 8_1:+50772867 Msa1198960:CDS
TTGTAGGGATAGTGGTTGTA+GGG 0.462214 8_1:-50771223 None:intergenic
TGGTGATGGTAGGTATGATA+GGG 0.464626 8_1:-50771274 None:intergenic
GTTGGTTGCGATTTCACTCC+GGG 0.465774 8_1:-50771426 None:intergenic
AGGGGTAGTGGTGGTGAGGG+TGG 0.470018 8_1:-50771255 None:intergenic
AGTGAAGATGGTGGTAGTGG+GGG 0.472105 8_1:-50771198 None:intergenic
GGTGGTGAGGGTGGCGAATG+TGG 0.473258 8_1:-50771246 None:intergenic
TTATGCATTGGCAAAGAAGC+TGG 0.473516 8_1:+50772920 Msa1198960:CDS
GTAGTGAAGATGGTGGTAGT+GGG 0.473726 8_1:-50771200 None:intergenic
GGTGGTAATGTGGGAAGGGA+TGG 0.475750 8_1:-50770748 None:intergenic
GGTGGTAATGTGGGAAGGGA+TGG 0.475750 8_1:-50771000 None:intergenic
TGATAGGGGTAGTGGTGGTG+AGG 0.478349 8_1:-50771259 None:intergenic
TAGTTGATTGCGCTTTCTCA+GGG 0.481392 8_1:-50771492 None:intergenic
TTGCGCAAATGTCAGAAACT+TGG 0.482429 8_1:+50772946 Msa1198960:CDS
TATGATGTTATTGGTTGTGG+TGG 0.483931 8_1:-50770508 None:intergenic
TCTAACATAGGTGTCATGTT+TGG 0.484082 8_1:-50773085 None:intergenic
CGGTTTAAGTGGGGTAATTG+GGG 0.485800 8_1:-50770595 None:intergenic
CGGTTTAAGTGGGGTAATTG+GGG 0.485800 8_1:-50770847 None:intergenic
GTTGTTGTTCGATGAGTGTT+GGG 0.487764 8_1:-50771082 None:intergenic
TACTGGTGATAGTAGGGGTG+GGG 0.488721 8_1:-50770926 None:intergenic
GGTAGGAGTAGTGGTTGGGG+TGG 0.493221 8_1:-50770712 None:intergenic
GTTAATCAGAACTCCGTTGT+TGG 0.498948 8_1:+50772866 Msa1198960:CDS
ATAGAGCACCACTATTGATC+TGG 0.499970 8_1:-50773129 None:intergenic
GTGGTGGTTAGAGTTGGAGG+TGG 0.500554 8_1:-50770492 None:intergenic
ATGGTGGTGCTTGAGGGAGT+AGG 0.504780 8_1:-50770981 None:intergenic
GGTTGTAGGGGTAGTGAAGA+TGG 0.506539 8_1:-50771210 None:intergenic
GATACTGGTGATAGTAGGGG+TGG 0.507596 8_1:-50770928 None:intergenic
TTGCTCTCTGGCTGATCTAA+CGG 0.509856 8_1:-50772992 None:intergenic
ACGGAGTTCTGATTAACTGC+TGG 0.513492 8_1:-50772860 None:intergenic
TGAAATCATTCGGTTTAAGT+GGG 0.513951 8_1:-50770605 None:intergenic
TGAAATCATTCGGTTTAAGT+GGG 0.513951 8_1:-50770857 None:intergenic
TGTTGTTGTTCGATGAGTGT+TGG 0.514177 8_1:-50771083 None:intergenic
TGATGGTATTGGTGGTAATG+TGG 0.520234 8_1:-50770758 None:intergenic
TGATGGTATTGGTGGTAATG+TGG 0.520234 8_1:-50771010 None:intergenic
GATAGGGGTAGTGGTGGTGA+GGG 0.522610 8_1:-50771258 None:intergenic
AGGTGGAGTTTCAAAATTGG+TGG 0.528008 8_1:-50770475 None:intergenic
GGTGTGAGCAGTGATGGTAG+AGG 0.528684 8_1:-50771177 None:intergenic
CATGCCCATGAATCTTCTGA+AGG 0.531817 8_1:-50771733 None:intergenic
GTGAGCAGTGATGGTAGAGG+TGG 0.533809 8_1:-50771174 None:intergenic
GGGTGGCGAATGTGGTTGTA+GGG 0.537742 8_1:-50771238 None:intergenic
TGTTGGTTGCGATTTCACTC+CGG 0.540502 8_1:-50771427 None:intergenic
ATCAAGAGATCCTCTAACAT+AGG 0.542974 8_1:-50773097 None:intergenic
TGAGCAGTGATGGTAGAGGT+GGG 0.544379 8_1:-50771173 None:intergenic
GGTAGGTATGATAGGGGTAG+TGG 0.546289 8_1:-50771267 None:intergenic
GATGGTATTGGTGGTAATGT+GGG 0.548603 8_1:-50770757 None:intergenic
GATGGTATTGGTGGTAATGT+GGG 0.548603 8_1:-50771009 None:intergenic
GACTTCAACCAGATCAATAG+TGG 0.548651 8_1:+50773121 Msa1198960:CDS
TCCCAATCATCATTGTCCAT+TGG 0.550956 8_1:-50770402 None:intergenic
ATTAGTCGTTGTAGTGGTGA+TGG 0.553401 8_1:-50771288 None:intergenic
ATACTAGTGATAGTAGGGGT+GGG 0.555078 8_1:-50770675 None:intergenic
TACTAGTGATAGTAGGGGTG+GGG 0.555369 8_1:-50770674 None:intergenic
GTTGTTGCGGAATTGATGGA+TGG 0.556808 8_1:-50771469 None:intergenic
CTTCAGAAGATTCATGGGCA+TGG 0.559542 8_1:+50771734 Msa1198960:CDS
GCGATTTCACTCCGGGCATG+GGG 0.562469 8_1:-50771419 None:intergenic
ACTAGTGTTAGTGATGGTAT+TGG 0.562993 8_1:-50771021 None:intergenic
GGAGTTTCAAAATTGGTGGT+AGG 0.564205 8_1:-50770471 None:intergenic
AGGTGGGGATAGTGGTGTTG+GGG 0.565500 8_1:-50771157 None:intergenic
CATGGCACACAAATGTCACT+TGG 0.574104 8_1:-50771696 None:intergenic
ACTAGTGTTAGTGATGGTAT+TGG 0.575832 8_1:-50770769 None:intergenic
AGTAGGAGTAGTGGTTGGGG+TGG 0.584381 8_1:-50770964 None:intergenic
TTAAAGGGTCTCCACATCCA+AGG 0.584498 8_1:+50771779 Msa1198960:CDS
CGAACCTTCAGAAGATTCAT+GGG 0.585253 8_1:+50771729 Msa1198960:CDS
ATCATCAAAGCATGGAGGTG+TGG 0.586562 8_1:-50770796 None:intergenic
AAACTAAAATCATCAAAGCA+TGG 0.588328 8_1:-50770552 None:intergenic
AAACTAAAATCATCAAAGCA+TGG 0.588328 8_1:-50770804 None:intergenic
TCAAAGACTAGATTATGCAT+TGG 0.588584 8_1:+50772908 Msa1198960:CDS
GCTTGAGGGAGTAGGAGTAG+TGG 0.588951 8_1:-50770973 None:intergenic
AAGGTTCGTCTTCCCTCACA+TGG 0.591333 8_1:-50771714 None:intergenic
GAATGTGGTTGTAGGGATAG+TGG 0.594762 8_1:-50771231 None:intergenic
ATCATCAAAGCATGGAGGTG+TGG 0.594915 8_1:-50770544 None:intergenic
ATGAAAACTAGTGTTAGTGA+TGG 0.596957 8_1:-50771027 None:intergenic
GGTGATGGTAGGTATGATAG+GGG 0.597368 8_1:-50771273 None:intergenic
GAATGCACAATCAAAACTGT+TGG 0.598794 8_1:-50771444 None:intergenic
GGTGGTAGGAGTAGCAAAGG+TGG 0.601050 8_1:-50770457 None:intergenic
ATACTGGTGATAGTAGGGGT+GGG 0.601151 8_1:-50770927 None:intergenic
AGTGTTAGTGATGGTATTGG+TGG 0.606164 8_1:-50770766 None:intergenic
AGTGTTAGTGATGGTATTGG+TGG 0.606164 8_1:-50771018 None:intergenic
GTATTGGTGGTAATGTGGGA+AGG 0.610190 8_1:-50770753 None:intergenic
GTATTGGTGGTAATGTGGGA+AGG 0.610190 8_1:-50771005 None:intergenic
GATACTAGTGATAGTAGGGG+TGG 0.616026 8_1:-50770676 None:intergenic
ACTAGTATTAGTCGTTGTAG+TGG 0.622593 8_1:-50771294 None:intergenic
TATTGGTGGTAATGTGGGAA+GGG 0.622832 8_1:-50770752 None:intergenic
TATTGGTGGTAATGTGGGAA+GGG 0.622832 8_1:-50771004 None:intergenic
GACATTTGTGTGCCATGTGA+GGG 0.624856 8_1:+50771702 Msa1198960:CDS
TGTAGGGATAGTGGTTGTAG+GGG 0.630150 8_1:-50771222 None:intergenic
ATTGGTGGTAGGAGTAGCAA+AGG 0.636849 8_1:-50770460 None:intergenic
TGGGATACTGGTGATAGTAG+GGG 0.637481 8_1:-50770931 None:intergenic
GAAATCATTCGGTTTAAGTG+GGG 0.641149 8_1:-50770604 None:intergenic
GAAATCATTCGGTTTAAGTG+GGG 0.641149 8_1:-50770856 None:intergenic
GTCGTTGTAGTGGTGATGGT+AGG 0.642975 8_1:-50771284 None:intergenic
TGACATTTGTGTGCCATGTG+AGG 0.643817 8_1:+50771701 Msa1198960:CDS
AGGTATGATAGGGGTAGTGG+TGG 0.649146 8_1:-50771264 None:intergenic
AGTTGATTGCGCTTTCTCAG+GGG 0.662828 8_1:-50771491 None:intergenic
GGTAAAACTAGTGTTAGTGA+TGG 0.671690 8_1:-50770775 None:intergenic
TGTAGGGGTAGTGAAGATGG+TGG 0.689397 8_1:-50771207 None:intergenic
GAGCAGTGATGGTAGAGGTG+GGG 0.706368 8_1:-50771172 None:intergenic
TGGGATACTAGTGATAGTAG+GGG 0.723289 8_1:-50770679 None:intergenic
CTAAAATCATCAAAGCATGG+AGG 0.732238 8_1:-50770549 None:intergenic
CTAAAATCATCAAAGCATGG+AGG 0.732238 8_1:-50770801 None:intergenic
AGATCAGCCAGAGAGCAACG+AGG 0.772309 8_1:+50772997 Msa1198960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAATATAATAAATAAT+AGG - chr8_1:50771612-50771631 None:intergenic 0.0%
!!! TTCACTATAAATAAATTTTA+CGG - chr8_1:50772233-50772252 None:intergenic 10.0%
!! AAATTTATTTATAGTGAAAT+TGG + chr8_1:50772235-50772254 Msa1198960:intron 10.0%
!!! CTTTTTCTTGATTTAAATTT+TGG - chr8_1:50771575-50771594 None:intergenic 15.0%
!! CAAAATTTAAATCAAGAAAA+AGG + chr8_1:50771573-50771592 Msa1198960:CDS 15.0%
!!! ATGAAATGTATAATGATTTT+AGG - chr8_1:50771654-50771673 None:intergenic 15.0%
!! TATCAAAATAAGGATTAAAA+TGG - chr8_1:50772273-50772292 None:intergenic 15.0%
!!! GATTTTATTCTATCAAAATA+AGG - chr8_1:50772283-50772302 None:intergenic 15.0%
!! TATATACATTTATATGTGTA+TGG + chr8_1:50772651-50772670 Msa1198960:intron 15.0%
!!! AAATATACCACTTTTTCTTT+TGG - chr8_1:50772379-50772398 None:intergenic 20.0%
!! TAAATAAAGTGAAAGATCTT+AGG - chr8_1:50772523-50772542 None:intergenic 20.0%
!!! TATTAGAGAGTTTTACATAA+AGG - chr8_1:50772633-50772652 None:intergenic 20.0%
!! TATTAAATAGTACGATTTAG+CGG + chr8_1:50772681-50772700 Msa1198960:intron 20.0%
! AAACTAAAATCATCAAAGCA+TGG - chr8_1:50770555-50770574 None:intergenic 25.0%
! AAACTAAAATCATCAAAGCA+TGG - chr8_1:50770555-50770574 None:intergenic 25.0%
! AAACATACACTTCATTGTTA+CGG - chr8_1:50771394-50771413 None:intergenic 25.0%
!! AAAAATCTAGAATTTGTTCG+AGG - chr8_1:50771530-50771549 None:intergenic 25.0%
! TTAACTACAATTCTTTCCAA+TGG - chr8_1:50771933-50771952 None:intergenic 25.0%
!!! ATGTACTGTTAATTGCTTTT+TGG + chr8_1:50772094-50772113 Msa1198960:intron 25.0%
! GGATTAAAATGGATATTGAA+GGG - chr8_1:50772262-50772281 None:intergenic 25.0%
! AGGATTAAAATGGATATTGA+AGG - chr8_1:50772263-50772282 None:intergenic 25.0%
! CTAATATGAATAAAGTTTGC+AGG + chr8_1:50772332-50772351 Msa1198960:intron 25.0%
! ATAAAGACCAAAAGAAAAAG+TGG + chr8_1:50772369-50772388 Msa1198960:intron 25.0%
! AAAAGAGAGGATATATTTGT+AGG + chr8_1:50772423-50772442 Msa1198960:intron 25.0%
! AAAGAGAGGATATATTTGTA+GGG + chr8_1:50772424-50772443 Msa1198960:intron 25.0%
!! AAATCGATGAATGATTTTGT+AGG + chr8_1:50772720-50772739 Msa1198960:intron 25.0%
TGAAATCATTCGGTTTAAGT+GGG - chr8_1:50770608-50770627 None:intergenic 30.0%
ATGAAATCATTCGGTTTAAG+TGG - chr8_1:50770609-50770628 None:intergenic 30.0%
TCAAGCTCTATGAAATCATT+CGG - chr8_1:50770618-50770637 None:intergenic 30.0%
TGAAATCATTCGGTTTAAGT+GGG - chr8_1:50770608-50770627 None:intergenic 30.0%
ATGAAATCATTCGGTTTAAG+TGG - chr8_1:50770609-50770628 None:intergenic 30.0%
TCAAGCTCTATGAAATCATT+CGG - chr8_1:50770618-50770637 None:intergenic 30.0%
ATGAAAACTAGTGTTAGTGA+TGG - chr8_1:50771030-50771049 None:intergenic 30.0%
TGTTGGGAAATTAGAAAAGA+TGG - chr8_1:50771069-50771088 None:intergenic 30.0%
GTTTACTGAGCTAGAAAAAA+TGG + chr8_1:50771121-50771140 Msa1198960:CDS 30.0%
!!! GGTTTTTTCGAATGTGTATT+TGG - chr8_1:50771554-50771573 None:intergenic 30.0%
TATGGAGAAAAACCCATTAA+AGG + chr8_1:50771763-50771782 Msa1198960:CDS 30.0%
ATGGAGAAAAACCCATTAAA+GGG + chr8_1:50771764-50771783 Msa1198960:CDS 30.0%
CGTTTAATGCATAAAAACCT+TGG - chr8_1:50771799-50771818 None:intergenic 30.0%
! CACTATTTAAAACTCTAGGT+GGG - chr8_1:50771888-50771907 None:intergenic 30.0%
! TCACTATTTAAAACTCTAGG+TGG - chr8_1:50771889-50771908 None:intergenic 30.0%
! CGATCACTATTTAAAACTCT+AGG - chr8_1:50771892-50771911 None:intergenic 30.0%
!!! AGTTTTAAATAGTGATCGCA+AGG + chr8_1:50771894-50771913 Msa1198960:intron 30.0%
TACAATTCTTTCCAATGGTA+AGG - chr8_1:50771928-50771947 None:intergenic 30.0%
CAAAAAATGATACATCTGCA+TGG - chr8_1:50772137-50772156 None:intergenic 30.0%
!!! GTTTAGTCCCTCTATTTTTT+GGG + chr8_1:50772158-50772177 Msa1198960:intron 30.0%
TGTGTTTCCCAAAAAATAGA+GGG - chr8_1:50772168-50772187 None:intergenic 30.0%
TTGTGTTTCCCAAAAAATAG+AGG - chr8_1:50772169-50772188 None:intergenic 30.0%
ACAATTACACCTTTGATCTT+TGG + chr8_1:50772185-50772204 Msa1198960:intron 30.0%
AAGGAAGAAAAAGAAAAGAG+AGG + chr8_1:50772410-50772429 Msa1198960:intron 30.0%
ACTACAAATGTAGAAGTTTC+TGG + chr8_1:50772747-50772766 Msa1198960:CDS 30.0%
CTACAAATGTAGAAGTTTCT+GGG + chr8_1:50772748-50772767 Msa1198960:CDS 30.0%
ACTTATGTCGTGACATATAA+AGG + chr8_1:50772818-50772837 Msa1198960:CDS 30.0%
!!! AGTCTTTGATGACTTGTTTT+GGG - chr8_1:50772897-50772916 None:intergenic 30.0%
!!! TAGTCTTTGATGACTTGTTT+TGG - chr8_1:50772898-50772917 None:intergenic 30.0%
TCAAAGACTAGATTATGCAT+TGG + chr8_1:50772908-50772927 Msa1198960:CDS 30.0%
! TATGATGTTATTGGTTGTGG+TGG - chr8_1:50770511-50770530 None:intergenic 35.0%
! GGATATGATGTTATTGGTTG+TGG - chr8_1:50770514-50770533 None:intergenic 35.0%
TTGAGGGGATATGATGTTAT+TGG - chr8_1:50770520-50770539 None:intergenic 35.0%
CTAAAATCATCAAAGCATGG+AGG - chr8_1:50770552-50770571 None:intergenic 35.0%
GAAATCATTCGGTTTAAGTG+GGG - chr8_1:50770607-50770626 None:intergenic 35.0%
TTGGGATACTAGTGATAGTA+GGG - chr8_1:50770683-50770702 None:intergenic 35.0%
ACTAGTGTTAGTGATGGTAT+TGG - chr8_1:50770772-50770791 None:intergenic 35.0%
GGTAAAACTAGTGTTAGTGA+TGG - chr8_1:50770778-50770797 None:intergenic 35.0%
CTAAAATCATCAAAGCATGG+AGG - chr8_1:50770552-50770571 None:intergenic 35.0%
GAAATCATTCGGTTTAAGTG+GGG - chr8_1:50770607-50770626 None:intergenic 35.0%
ACTAGTGTTAGTGATGGTAT+TGG - chr8_1:50770772-50770791 None:intergenic 35.0%
ACTAGTATTAGTCGTTGTAG+TGG - chr8_1:50771297-50771316 None:intergenic 35.0%
TACACTTCATTGTTACGGTT+TGG - chr8_1:50771389-50771408 None:intergenic 35.0%
GAATGCACAATCAAAACTGT+TGG - chr8_1:50771447-50771466 None:intergenic 35.0%
TTTGTTCGAGGTAGTAGAAA+TGG - chr8_1:50771518-50771537 None:intergenic 35.0%
TCATGGGCATGGAAAAAATA+TGG + chr8_1:50771745-50771764 Msa1198960:CDS 35.0%
ATGCATAAAAACCTTGGATG+TGG - chr8_1:50771793-50771812 None:intergenic 35.0%
GTAGTTAAATGCAACATACG+TGG + chr8_1:50771945-50771964 Msa1198960:intron 35.0%
!!! CGTTTAGTCCCTCTATTTTT+TGG + chr8_1:50772157-50772176 Msa1198960:intron 35.0%
CATCAAAGACCAAAGATCAA+AGG - chr8_1:50772197-50772216 None:intergenic 35.0%
TCTTACACTGAGTGACATAT+TGG - chr8_1:50772593-50772612 None:intergenic 35.0%
ATATGTCACTCAGTGTAAGA+CGG + chr8_1:50772593-50772612 Msa1198960:intron 35.0%
!! TAGAAGTTTCTGGGATTGTT+TGG + chr8_1:50772757-50772776 Msa1198960:CDS 35.0%
TTAATCAGAACTCCGTTGTT+GGG + chr8_1:50772867-50772886 Msa1198960:CDS 35.0%
AAACTTGGAATCGCCTAATA+TGG + chr8_1:50772961-50772980 Msa1198960:CDS 35.0%
CAAAAACTCCATAGACGTAT+CGG - chr8_1:50773035-50773054 None:intergenic 35.0%
! GATACGTCTATGGAGTTTTT+GGG + chr8_1:50773034-50773053 Msa1198960:CDS 35.0%
! TCTAACATAGGTGTCATGTT+TGG - chr8_1:50773088-50773107 None:intergenic 35.0%
AAACATGACACCTATGTTAG+AGG + chr8_1:50773087-50773106 Msa1198960:CDS 35.0%
ATCAAGAGATCCTCTAACAT+AGG - chr8_1:50773100-50773119 None:intergenic 35.0%
TATGTTAGAGGATCTCTTGA+TGG + chr8_1:50773099-50773118 Msa1198960:CDS 35.0%
! GGAGTTTCAAAATTGGTGGT+AGG - chr8_1:50770474-50770493 None:intergenic 40.0%
AGGTGGAGTTTCAAAATTGG+TGG - chr8_1:50770478-50770497 None:intergenic 40.0%
TGGAGGTGGAGTTTCAAAAT+TGG - chr8_1:50770481-50770500 None:intergenic 40.0%
TCGGTTTAAGTGGGGTAATT+GGG - chr8_1:50770599-50770618 None:intergenic 40.0%
TTCGGTTTAAGTGGGGTAAT+TGG - chr8_1:50770600-50770619 None:intergenic 40.0%
ATACTAGTGATAGTAGGGGT+GGG - chr8_1:50770678-50770697 None:intergenic 40.0%
TGGGATACTAGTGATAGTAG+GGG - chr8_1:50770682-50770701 None:intergenic 40.0%
GTTGGGATACTAGTGATAGT+AGG - chr8_1:50770684-50770703 None:intergenic 40.0%
! TATTGGTGGTAATGTGGGAA+GGG - chr8_1:50770755-50770774 None:intergenic 40.0%
!! GATGGTATTGGTGGTAATGT+GGG - chr8_1:50770760-50770779 None:intergenic 40.0%
!! TGATGGTATTGGTGGTAATG+TGG - chr8_1:50770761-50770780 None:intergenic 40.0%
! AGTGTTAGTGATGGTATTGG+TGG - chr8_1:50770769-50770788 None:intergenic 40.0%
TCGGTTTAAGTGGGGTAATT+GGG - chr8_1:50770599-50770618 None:intergenic 40.0%
TTCGGTTTAAGTGGGGTAAT+TGG - chr8_1:50770600-50770619 None:intergenic 40.0%
TTGGGATACTGGTGATAGTA+GGG - chr8_1:50770935-50770954 None:intergenic 40.0%
! TATTGGTGGTAATGTGGGAA+GGG - chr8_1:50770755-50770774 None:intergenic 40.0%
!! GATGGTATTGGTGGTAATGT+GGG - chr8_1:50770760-50770779 None:intergenic 40.0%
!! TGATGGTATTGGTGGTAATG+TGG - chr8_1:50770761-50770780 None:intergenic 40.0%
! AGTGTTAGTGATGGTATTGG+TGG - chr8_1:50770769-50770788 None:intergenic 40.0%
! GTTGTTGTTCGATGAGTGTT+GGG - chr8_1:50771085-50771104 None:intergenic 40.0%
! TGTTGTTGTTCGATGAGTGT+TGG - chr8_1:50771086-50771105 None:intergenic 40.0%
! TTGTAGGGATAGTGGTTGTA+GGG - chr8_1:50771226-50771245 None:intergenic 40.0%
!! TGGTGATGGTAGGTATGATA+GGG - chr8_1:50771277-50771296 None:intergenic 40.0%
ATTAGTCGTTGTAGTGGTGA+TGG - chr8_1:50771291-50771310 None:intergenic 40.0%
TAGTTGATTGCGCTTTCTCA+GGG - chr8_1:50771495-50771514 None:intergenic 40.0%
ACGAACCTTCAGAAGATTCA+TGG + chr8_1:50771728-50771747 Msa1198960:CDS 40.0%
CGAACCTTCAGAAGATTCAT+GGG + chr8_1:50771729-50771748 Msa1198960:CDS 40.0%
CTTTCCAATGGTAAGGATCA+TGG - chr8_1:50771921-50771940 None:intergenic 40.0%
! AACATACGTGGTCTTAATCG+CGG + chr8_1:50771957-50771976 Msa1198960:intron 40.0%
GTTAATCAGAACTCCGTTGT+TGG + chr8_1:50772866-50772885 Msa1198960:CDS 40.0%
!!! CTTTGATGACTTGTTTTGGG+AGG - chr8_1:50772894-50772913 None:intergenic 40.0%
! TTATGCATTGGCAAAGAAGC+TGG + chr8_1:50772920-50772939 Msa1198960:CDS 40.0%
TTGCGCAAATGTCAGAAACT+TGG + chr8_1:50772946-50772965 Msa1198960:CDS 40.0%
AGTTCTTACCGATACGTCTA+TGG + chr8_1:50773024-50773043 Msa1198960:CDS 40.0%
! CGATACGTCTATGGAGTTTT+TGG + chr8_1:50773033-50773052 Msa1198960:CDS 40.0%
GACTTCAACCAGATCAATAG+TGG + chr8_1:50773121-50773140 Msa1198960:CDS 40.0%
! ATAGAGCACCACTATTGATC+TGG - chr8_1:50773132-50773151 None:intergenic 40.0%
! ATTGGTGGTAGGAGTAGCAA+AGG - chr8_1:50770463-50770482 None:intergenic 45.0%
TTGGTTGTGGTGGTTAGAGT+TGG - chr8_1:50770501-50770520 None:intergenic 45.0%
!! ATGGAGGTGTGGTGTTTTGA+GGG - chr8_1:50770536-50770555 None:intergenic 45.0%
ATCATCAAAGCATGGAGGTG+TGG - chr8_1:50770547-50770566 None:intergenic 45.0%
TGGGGCTGAGTTATTCTCTT+TGG - chr8_1:50770580-50770599 None:intergenic 45.0%
CGGTTTAAGTGGGGTAATTG+GGG - chr8_1:50770598-50770617 None:intergenic 45.0%
TACTAGTGATAGTAGGGGTG+GGG - chr8_1:50770677-50770696 None:intergenic 45.0%
GATACTAGTGATAGTAGGGG+TGG - chr8_1:50770679-50770698 None:intergenic 45.0%
! GTATTGGTGGTAATGTGGGA+AGG - chr8_1:50770756-50770775 None:intergenic 45.0%
ATCATCAAAGCATGGAGGTG+TGG - chr8_1:50770547-50770566 None:intergenic 45.0%
TGGGGCTGAGTTATTCTCTT+TGG - chr8_1:50770580-50770599 None:intergenic 45.0%
CGGTTTAAGTGGGGTAATTG+GGG - chr8_1:50770598-50770617 None:intergenic 45.0%
ATACTGGTGATAGTAGGGGT+GGG - chr8_1:50770930-50770949 None:intergenic 45.0%
TGGGATACTGGTGATAGTAG+GGG - chr8_1:50770934-50770953 None:intergenic 45.0%
GTTGGGATACTGGTGATAGT+AGG - chr8_1:50770936-50770955 None:intergenic 45.0%
! GTATTGGTGGTAATGTGGGA+AGG - chr8_1:50770756-50770775 None:intergenic 45.0%
! TAGTGAAGATGGTGGTAGTG+GGG - chr8_1:50771202-50771221 None:intergenic 45.0%
! GTAGTGAAGATGGTGGTAGT+GGG - chr8_1:50771203-50771222 None:intergenic 45.0%
! TGTAGGGATAGTGGTTGTAG+GGG - chr8_1:50771225-50771244 None:intergenic 45.0%
! GTTGTAGGGATAGTGGTTGT+AGG - chr8_1:50771227-50771246 None:intergenic 45.0%
GAATGTGGTTGTAGGGATAG+TGG - chr8_1:50771234-50771253 None:intergenic 45.0%
! GGTGATGGTAGGTATGATAG+GGG - chr8_1:50771276-50771295 None:intergenic 45.0%
!! GTGGTGATGGTAGGTATGAT+AGG - chr8_1:50771278-50771297 None:intergenic 45.0%
!! ATGTTTTTGAACCCCATGCC+CGG + chr8_1:50771408-50771427 Msa1198960:CDS 45.0%
! TGTTGGTTGCGATTTCACTC+CGG - chr8_1:50771430-50771449 None:intergenic 45.0%
GTTGTTGCGGAATTGATGGA+TGG - chr8_1:50771472-50771491 None:intergenic 45.0%
AGTTGATTGCGCTTTCTCAG+GGG - chr8_1:50771494-50771513 None:intergenic 45.0%
GTAGTTGATTGCGCTTTCTC+AGG - chr8_1:50771496-50771515 None:intergenic 45.0%
CATGGCACACAAATGTCACT+TGG - chr8_1:50771699-50771718 None:intergenic 45.0%
TGACATTTGTGTGCCATGTG+AGG + chr8_1:50771701-50771720 Msa1198960:CDS 45.0%
GACATTTGTGTGCCATGTGA+GGG + chr8_1:50771702-50771721 Msa1198960:CDS 45.0%
CATGCCCATGAATCTTCTGA+AGG - chr8_1:50771736-50771755 None:intergenic 45.0%
CTTCAGAAGATTCATGGGCA+TGG + chr8_1:50771734-50771753 Msa1198960:CDS 45.0%
GGATGTGGAGACCCTTTAAT+GGG - chr8_1:50771778-50771797 None:intergenic 45.0%
TGGATGTGGAGACCCTTTAA+TGG - chr8_1:50771779-50771798 None:intergenic 45.0%
TTAAAGGGTCTCCACATCCA+AGG + chr8_1:50771779-50771798 Msa1198960:CDS 45.0%
AGGACCATGATCCTTACCAT+TGG + chr8_1:50771914-50771933 Msa1198960:intron 45.0%
! ACGGAGTTCTGATTAACTGC+TGG - chr8_1:50772863-50772882 None:intergenic 45.0%
AACGGCAACATCGCCATATT+AGG - chr8_1:50772977-50772996 None:intergenic 45.0%
TTGCTCTCTGGCTGATCTAA+CGG - chr8_1:50772995-50773014 None:intergenic 45.0%
!!! GTATATTTTTTTTAAAAAAA+AGG + chr8_1:50772391-50772410 Msa1198960:intron 5.0%
GTTGTGGTGGTTAGAGTTGG+AGG - chr8_1:50770498-50770517 None:intergenic 50.0%
!! TGGAGGTGTGGTGTTTTGAG+GGG - chr8_1:50770535-50770554 None:intergenic 50.0%
!! CATGGAGGTGTGGTGTTTTG+AGG - chr8_1:50770537-50770556 None:intergenic 50.0%
! TTGGGGTGGTAGTGATGGTT+GGG - chr8_1:50770701-50770720 None:intergenic 50.0%
TACTGGTGATAGTAGGGGTG+GGG - chr8_1:50770929-50770948 None:intergenic 50.0%
GATACTGGTGATAGTAGGGG+TGG - chr8_1:50770931-50770950 None:intergenic 50.0%
GGTAGTGATGGTTGGGATAC+TGG - chr8_1:50770694-50770713 None:intergenic 50.0%
! TTGGGGTGGTAGTGATGGTT+GGG - chr8_1:50770701-50770720 None:intergenic 50.0%
AGGGAGTAGGAGTAGTGGTT+GGG - chr8_1:50770971-50770990 None:intergenic 50.0%
TGAGCAGTGATGGTAGAGGT+GGG - chr8_1:50771176-50771195 None:intergenic 50.0%
!! AGTGAAGATGGTGGTAGTGG+GGG - chr8_1:50771201-50771220 None:intergenic 50.0%
! GGTAGTGAAGATGGTGGTAG+TGG - chr8_1:50771204-50771223 None:intergenic 50.0%
TGTAGGGGTAGTGAAGATGG+TGG - chr8_1:50771210-50771229 None:intergenic 50.0%
GGTTGTAGGGGTAGTGAAGA+TGG - chr8_1:50771213-50771232 None:intergenic 50.0%
! AGGTATGATAGGGGTAGTGG+TGG - chr8_1:50771267-50771286 None:intergenic 50.0%
GGTAGGTATGATAGGGGTAG+TGG - chr8_1:50771270-50771289 None:intergenic 50.0%
!! GTCGTTGTAGTGGTGATGGT+AGG - chr8_1:50771287-50771306 None:intergenic 50.0%
GTTGGTTGCGATTTCACTCC+GGG - chr8_1:50771429-50771448 None:intergenic 50.0%
AGGGGTTGTTGCGGAATTGA+TGG - chr8_1:50771476-50771495 None:intergenic 50.0%
AAGGTTCGTCTTCCCTCACA+TGG - chr8_1:50771717-50771736 None:intergenic 50.0%
CTCTAGGTGGGTGTGTGTTT+AGG - chr8_1:50771876-50771895 None:intergenic 50.0%
! GTGTCGCTCGTTGCAAAGAA+TGG - chr8_1:50772024-50772043 None:intergenic 50.0%
!!! GTTTTGGGAGGTCCCAACAA+CGG - chr8_1:50772882-50772901 None:intergenic 50.0%
GGTGGTAGGAGTAGCAAAGG+TGG - chr8_1:50770460-50770479 None:intergenic 55.0%
GTGGTGGTTAGAGTTGGAGG+TGG - chr8_1:50770495-50770514 None:intergenic 55.0%
GATAGTAGGGGTGGGGATAG+TGG - chr8_1:50770670-50770689 None:intergenic 55.0%
! GTTGGGGTGGTAGTGATGGT+TGG - chr8_1:50770702-50770721 None:intergenic 55.0%
! AGTGGTTGGGGTGGTAGTGA+TGG - chr8_1:50770706-50770725 None:intergenic 55.0%
AGGGGGTAGGAGTAGTGGTT+GGG - chr8_1:50770719-50770738 None:intergenic 55.0%
! AAGGGATGGTGGTGCTTGAG+GGG - chr8_1:50770737-50770756 None:intergenic 55.0%
! GAAGGGATGGTGGTGCTTGA+GGG - chr8_1:50770738-50770757 None:intergenic 55.0%
GGTAATGTGGGAAGGGATGG+TGG - chr8_1:50770748-50770767 None:intergenic 55.0%
! GGTGGTAATGTGGGAAGGGA+TGG - chr8_1:50770751-50770770 None:intergenic 55.0%
GGGGTGGGGATAGTTGTTGT+TGG - chr8_1:50770915-50770934 None:intergenic 55.0%
! GTTGGGGTGGTAGTGATGGT+TGG - chr8_1:50770702-50770721 None:intergenic 55.0%
! AGTGGTTGGGGTGGTAGTGA+TGG - chr8_1:50770706-50770725 None:intergenic 55.0%
AGTAGGAGTAGTGGTTGGGG+TGG - chr8_1:50770967-50770986 None:intergenic 55.0%
GGGAGTAGGAGTAGTGGTTG+GGG - chr8_1:50770970-50770989 None:intergenic 55.0%
GAGGGAGTAGGAGTAGTGGT+TGG - chr8_1:50770972-50770991 None:intergenic 55.0%
GCTTGAGGGAGTAGGAGTAG+TGG - chr8_1:50770976-50770995 None:intergenic 55.0%
! ATGGTGGTGCTTGAGGGAGT+AGG - chr8_1:50770984-50771003 None:intergenic 55.0%
! GAAGGGATGGTGGTGCTTGA+GGG - chr8_1:50770738-50770757 None:intergenic 55.0%
GGTAATGTGGGAAGGGATGG+TGG - chr8_1:50770748-50770767 None:intergenic 55.0%
! GGTGGTAATGTGGGAAGGGA+TGG - chr8_1:50770751-50770770 None:intergenic 55.0%
! AGGTGGGGATAGTGGTGTTG+GGG - chr8_1:50771160-50771179 None:intergenic 55.0%
! GAGGTGGGGATAGTGGTGTT+GGG - chr8_1:50771161-50771180 None:intergenic 55.0%
! AGAGGTGGGGATAGTGGTGT+TGG - chr8_1:50771162-50771181 None:intergenic 55.0%
GATGGTAGAGGTGGGGATAG+TGG - chr8_1:50771168-50771187 None:intergenic 55.0%
GAGCAGTGATGGTAGAGGTG+GGG - chr8_1:50771175-50771194 None:intergenic 55.0%
GTGAGCAGTGATGGTAGAGG+TGG - chr8_1:50771177-50771196 None:intergenic 55.0%
GGTGTGAGCAGTGATGGTAG+AGG - chr8_1:50771180-50771199 None:intergenic 55.0%
GGGTGGCGAATGTGGTTGTA+GGG - chr8_1:50771241-50771260 None:intergenic 55.0%
AGGGTGGCGAATGTGGTTGT+AGG - chr8_1:50771242-50771261 None:intergenic 55.0%
! GATAGGGGTAGTGGTGGTGA+GGG - chr8_1:50771261-50771280 None:intergenic 55.0%
! TGATAGGGGTAGTGGTGGTG+AGG - chr8_1:50771262-50771281 None:intergenic 55.0%
TGCGATTTCACTCCGGGCAT+GGG - chr8_1:50771423-50771442 None:intergenic 55.0%
TTGCGATTTCACTCCGGGCA+TGG - chr8_1:50771424-50771443 None:intergenic 55.0%
CGCTTTCTCAGGGGTTGTTG+CGG - chr8_1:50771485-50771504 None:intergenic 55.0%
AGATCAGCCAGAGAGCAACG+AGG + chr8_1:50772997-50773016 Msa1198960:CDS 55.0%
ACTTGAGCCTCGTTGCTCTC+TGG - chr8_1:50773007-50773026 None:intergenic 55.0%
! GGGGTGGGGATAGTGGTTGT+TGG - chr8_1:50770663-50770682 None:intergenic 60.0%
GGTAGGAGTAGTGGTTGGGG+TGG - chr8_1:50770715-50770734 None:intergenic 60.0%
GGGGGTAGGAGTAGTGGTTG+GGG - chr8_1:50770718-50770737 None:intergenic 60.0%
GAGGGGGTAGGAGTAGTGGT+TGG - chr8_1:50770720-50770739 None:intergenic 60.0%
GCTTGAGGGGGTAGGAGTAG+TGG - chr8_1:50770724-50770743 None:intergenic 60.0%
! ATGGTGGTGCTTGAGGGGGT+AGG - chr8_1:50770732-50770751 None:intergenic 60.0%
! AGGGATGGTGGTGCTTGAGG+GGG - chr8_1:50770736-50770755 None:intergenic 60.0%
! GGAAGGGATGGTGGTGCTTG+AGG - chr8_1:50770739-50770758 None:intergenic 60.0%
! GGAAGGGATGGTGGTGCTTG+AGG - chr8_1:50770739-50770758 None:intergenic 60.0%
! AGTGGGGGTGTGAGCAGTGA+TGG - chr8_1:50771186-50771205 None:intergenic 60.0%
GCGATTTCACTCCGGGCATG+GGG - chr8_1:50771422-50771441 None:intergenic 60.0%
GGTGGTGAGGGTGGCGAATG+TGG - chr8_1:50771249-50771268 None:intergenic 65.0%
! AGGGGTAGTGGTGGTGAGGG+TGG - chr8_1:50771258-50771277 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 50770405 50773159 50770405 ID=Msa1198960;Name=Msa1198960
chr8_1 mRNA 50770405 50773159 50770405 ID=Msa1198960-mRNA-1;Parent=Msa1198960;Name=Msa1198960-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|3|0|574
chr8_1 exon 50770405 50771594 50770405 ID=Msa1198960-mRNA-1:exon:15995;Parent=Msa1198960-mRNA-1
chr8_1 exon 50771684 50771800 50771684 ID=Msa1198960-mRNA-1:exon:15996;Parent=Msa1198960-mRNA-1
chr8_1 exon 50772742 50773159 50772742 ID=Msa1198960-mRNA-1:exon:15997;Parent=Msa1198960-mRNA-1
chr8_1 CDS 50770405 50771594 50770405 ID=Msa1198960-mRNA-1:cds;Parent=Msa1198960-mRNA-1
chr8_1 CDS 50771684 50771800 50771684 ID=Msa1198960-mRNA-1:cds;Parent=Msa1198960-mRNA-1
chr8_1 CDS 50772742 50773159 50772742 ID=Msa1198960-mRNA-1:cds;Parent=Msa1198960-mRNA-1
Gene Sequence

>Msa1198960

ATGGACAATGATGATTGGGATCTCTTTTCTATTGTTCGTAGCTGCAAAGCTACCACCTTTGCTACTCCTACCACCAATTTTGAAACTCCACCTCCAACTCTAACCACCACAACCAATAACATCATATCCCCTCAAAACACCACACCTCCATGCTTTGATGATTTTAGTTTTACCAAAGAGAATAACTCAGCCCCAATTACCCCACTTAAACCGAATGATTTCATAGAGCTTGACAAATTGATAATCAGTTTCAATCCAACAACCACTATCCCCACCCCTACTATCACTAGTATCCCAACCATCACTACCACCCCAACCACTACTCCTACCCCCTCAAGCACCACCATCCCTTCCCACATTACCACCAATACCATCACTAACACTAGTTTTACCACACCTCCATGCTTTGATGATTTTAGTTTTACCAAAGAGAATAACTCAGCCCCAATTACCCCACTTAAACCGAATGATTTCATAGAGCTTGACAAATTGATAATCAGTTTCAATCCAACAACAACTATCCCCACCCCTACTATCACCAGTATCCCAACCATCACTACCACCCCAACCACTACTCCTACTCCCTCAAGCACCACCATCCCTTCCCACATTACCACCAATACCATCACTAACACTAGTTTTCATGATTCTAATCAAAATTCCATCTTTTCTAATTTCCCAACACTCATCGAACAACAACAACTGCAACTAAATGAGTTTACTGAGCTAGAAAAAATGGTACTTAAATTCTACCCCAACACCACTATCCCCACCTCTACCATCACTGCTCACACCCCCACTACCACCATCTTCACTACCCCTACAACCACTATCCCTACAACCACATTCGCCACCCTCACCACCACTACCCCTATCATACCTACCATCACCACTACAACGACTAATACTAGTGTTTGCAAAACAAATCAATATCTTACAATTTCTGACTATCAAATACTCGTCGAAACACAACAGAATCAACCAAACCGTAACAATGAAGTGTATGTTTTTGAACCCCATGCCCGGAGTGAAATCGCAACCAACAGTTTTGATTGTGCATTCAACCATCCATCAATTCCGCAACAACCCCTGAGAAAGCGCAATCAACTACCATTTCTACTACCTCGAACAAATTCTAGATTTTTACCAAATACACATTCGAAAAAACCAAAATTTAAATCAAGAAAAAGAAAAAATAATAACCAAGTGACATTTGTGTGCCATGTGAGGGAAGACGAACCTTCAGAAGATTCATGGGCATGGAAAAAATATGGAGAAAAACCCATTAAAGGGTCTCCACATCCAAGGAGCTACTACAAATGTAGAAGTTTCTGGGATTGTTTGGCAAAAAAACTAGTAGAGAAAAGCAAAACATGTGAGAACACTTATGTCGTGACATATAAAGGAGAACACAATCATGAAAAACCAGCAGTTAATCAGAACTCCGTTGTTGGGACCTCCCAAAACAAGTCATCAAAGACTAGATTATGCATTGGCAAAGAAGCTGGATCTTGCGCAAATGTCAGAAACTTGGAATCGCCTAATATGGCGATGTTGCCGTTAGATCAGCCAGAGAGCAACGAGGCTCAAGTTCTTACCGATACGTCTATGGAGTTTTTGGGAAGCTCTGATGACGATGTCATTTTGATACCAAACATGACACCTATGTTAGAGGATCTCTTGATGGACTTCAACCAGATCAATAGTGGTGCTCTATTCCCTTAG
Protein sequence

>Msa1198960

MDNDDWDLFSIVRSCKATTFATPTTNFETPPPTLTTTTNNIISPQNTTPPCFDDFSFTKENNSAPITPLKPNDFIELDKLIISFNPTTTIPTPTITSIPTITTTPTTTPTPSSTTIPSHITTNTITNTSFTTPPCFDDFSFTKENNSAPITPLKPNDFIELDKLIISFNPTTTIPTPTITSIPTITTTPTTTPTPSSTTIPSHITTNTITNTSFHDSNQNSIFSNFPTLIEQQQLQLNEFTELEKMVLKFYPNTTIPTSTITAHTPTTTIFTTPTTTIPTTTFATLTTTTPIIPTITTTTTNTSVCKTNQYLTISDYQILVETQQNQPNRNNEVYVFEPHARSEIATNSFDCAFNHPSIPQQPLRKRNQLPFLLPRTNSRFLPNTHSKKPKFKSRKRKNNNQVTFVCHVREDEPSEDSWAWKKYGEKPIKGSPHPRSYYKCRSFWDCLAKKLVEKSKTCENTYVVTYKGEHNHEKPAVNQNSVVGTSQNKSSKTRLCIGKEAGSCANVRNLESPNMAMLPLDQPESNEAQVLTDTSMEFLGSSDDDVILIPNMTPMLEDLLMDFNQINSGALFP*