Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1200120 | sp|Q9LRW1|LBD22_ARATH | 75.676 | 111 | 27 | 0 | 11 | 121 | 35 | 145 | 1.94e-54 | 181 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1200120 | G7LHF8 | 94.915 | 295 | 15 | 0 | 9 | 303 | 9 | 303 | 0.0 | 514 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1200120 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1200120 | MtrunA17_Chr8g0342351 | 94.715 | 246 | 13 | 0 | 9 | 254 | 9 | 254 | 4.67e-158 | 441 |
| Msa1200120 | MtrunA17_Chr2g0330201 | 41.852 | 270 | 115 | 7 | 9 | 251 | 16 | 270 | 7.23e-50 | 167 |
| Msa1200120 | MtrunA17_Chr4g0059901 | 58.120 | 117 | 49 | 0 | 9 | 125 | 7 | 123 | 5.02e-36 | 130 |
| Msa1200120 | MtrunA17_Chr6g0452671 | 52.830 | 106 | 50 | 0 | 3 | 108 | 2 | 107 | 4.12e-34 | 123 |
| Msa1200120 | MtrunA17_Chr6g0452661 | 43.396 | 159 | 78 | 3 | 11 | 157 | 8 | 166 | 3.58e-31 | 117 |
| Msa1200120 | MtrunA17_Chr4g0055441 | 53.922 | 102 | 46 | 1 | 13 | 113 | 3 | 104 | 4.19e-30 | 111 |
| Msa1200120 | MtrunA17_Chr6g0452691 | 47.863 | 117 | 60 | 1 | 9 | 124 | 6 | 122 | 1.01e-28 | 108 |
| Msa1200120 | MtrunA17_Chr5g0439111 | 49.123 | 114 | 57 | 1 | 11 | 123 | 8 | 121 | 2.65e-27 | 106 |
| Msa1200120 | MtrunA17_Chr3g0117121 | 43.689 | 103 | 58 | 0 | 13 | 115 | 11 | 113 | 9.25e-26 | 101 |
| Msa1200120 | MtrunA17_Chr7g0227511 | 41.346 | 104 | 61 | 0 | 9 | 112 | 8 | 111 | 9.71e-26 | 100 |
| Msa1200120 | MtrunA17_Chr4g0058651 | 43.000 | 100 | 57 | 0 | 13 | 112 | 12 | 111 | 3.80e-25 | 99.4 |
| Msa1200120 | MtrunA17_Chr4g0043421 | 40.385 | 104 | 62 | 0 | 13 | 116 | 16 | 119 | 4.19e-25 | 99.0 |
| Msa1200120 | MtrunA17_Chr2g0311601 | 37.815 | 119 | 69 | 1 | 8 | 121 | 9 | 127 | 5.61e-25 | 98.2 |
| Msa1200120 | MtrunA17_Chr4g0040831 | 40.800 | 125 | 61 | 3 | 5 | 125 | 8 | 123 | 1.44e-24 | 98.6 |
| Msa1200120 | MtrunA17_Chr6g0449641 | 40.385 | 104 | 62 | 0 | 9 | 112 | 6 | 109 | 2.21e-23 | 93.6 |
| Msa1200120 | MtrunA17_Chr8g0353981 | 40.187 | 107 | 64 | 0 | 13 | 119 | 8 | 114 | 2.60e-23 | 95.5 |
| Msa1200120 | MtrunA17_Chr3g0114061 | 37.705 | 122 | 74 | 1 | 8 | 129 | 4 | 123 | 3.05e-23 | 93.6 |
| Msa1200120 | MtrunA17_Chr6g0449651 | 40.777 | 103 | 61 | 0 | 13 | 115 | 68 | 170 | 3.80e-23 | 94.4 |
| Msa1200120 | MtrunA17_Chr3g0106101 | 36.697 | 109 | 69 | 0 | 10 | 118 | 5 | 113 | 5.48e-23 | 93.6 |
| Msa1200120 | MtrunA17_Chr3g0115431 | 37.736 | 106 | 66 | 0 | 10 | 115 | 7 | 112 | 5.89e-23 | 94.7 |
| Msa1200120 | MtrunA17_Chr5g0402611 | 36.364 | 110 | 70 | 0 | 6 | 115 | 2 | 111 | 8.84e-23 | 96.3 |
| Msa1200120 | MtrunA17_Chr7g0225111 | 38.532 | 109 | 67 | 0 | 13 | 121 | 6 | 114 | 1.72e-22 | 90.5 |
| Msa1200120 | MtrunA17_Chr8g0374591 | 35.455 | 110 | 71 | 0 | 6 | 115 | 2 | 111 | 4.28e-22 | 89.7 |
| Msa1200120 | MtrunA17_Chr5g0444351 | 38.532 | 109 | 67 | 0 | 13 | 121 | 6 | 114 | 1.10e-21 | 89.0 |
| Msa1200120 | MtrunA17_Chr7g0260971 | 38.938 | 113 | 68 | 1 | 2 | 113 | 4 | 116 | 1.51e-21 | 90.5 |
| Msa1200120 | MtrunA17_Chr3g0097221 | 33.088 | 136 | 82 | 1 | 7 | 142 | 2 | 128 | 1.96e-21 | 92.0 |
| Msa1200120 | MtrunA17_Chr5g0438091 | 37.736 | 106 | 64 | 2 | 8 | 112 | 35 | 139 | 6.33e-21 | 88.6 |
| Msa1200120 | MtrunA17_Chr5g0437571 | 33.333 | 117 | 78 | 0 | 13 | 129 | 7 | 123 | 6.77e-21 | 87.4 |
| Msa1200120 | MtrunA17_Chr3g0129071 | 36.364 | 110 | 68 | 2 | 8 | 116 | 43 | 151 | 1.94e-20 | 88.2 |
| Msa1200120 | MtrunA17_Chr5g0437401 | 35.238 | 105 | 68 | 0 | 9 | 113 | 8 | 112 | 3.41e-20 | 85.9 |
| Msa1200120 | MtrunA17_Chr8g0374601 | 36.893 | 103 | 65 | 0 | 11 | 113 | 25 | 127 | 5.68e-20 | 87.8 |
| Msa1200120 | MtrunA17_Chr4g0030001 | 35.862 | 145 | 75 | 5 | 6 | 132 | 13 | 157 | 1.42e-19 | 84.7 |
| Msa1200120 | MtrunA17_Chr5g0435641 | 33.077 | 130 | 83 | 2 | 12 | 137 | 7 | 136 | 1.55e-19 | 84.7 |
| Msa1200120 | MtrunA17_Chr1g0200201 | 38.614 | 101 | 62 | 0 | 13 | 113 | 73 | 173 | 2.49e-19 | 84.7 |
| Msa1200120 | MtrunA17_Chr7g0261031 | 35.000 | 120 | 77 | 1 | 13 | 131 | 9 | 128 | 7.72e-19 | 83.6 |
| Msa1200120 | MtrunA17_Chr8g0351701 | 37.500 | 104 | 64 | 1 | 13 | 115 | 24 | 127 | 1.34e-18 | 82.8 |
| Msa1200120 | MtrunA17_Chr1g0184271 | 37.255 | 102 | 63 | 1 | 13 | 113 | 13 | 114 | 1.84e-18 | 82.8 |
| Msa1200120 | MtrunA17_Chr6g0460951 | 37.624 | 101 | 62 | 1 | 13 | 112 | 41 | 141 | 3.03e-18 | 82.0 |
| Msa1200120 | MtrunA17_Chr3g0113891 | 35.165 | 91 | 59 | 0 | 8 | 98 | 10 | 100 | 7.59e-18 | 79.7 |
| Msa1200120 | MtrunA17_Chr8g0351721 | 40.196 | 102 | 60 | 1 | 13 | 113 | 19 | 120 | 1.06e-17 | 80.1 |
| Msa1200120 | MtrunA17_Chr5g0432451 | 34.884 | 129 | 76 | 3 | 8 | 129 | 39 | 166 | 1.28e-17 | 80.1 |
| Msa1200120 | MtrunA17_Chr1g0184281 | 37.963 | 108 | 62 | 3 | 13 | 117 | 16 | 121 | 1.10e-15 | 74.3 |
| Msa1200120 | MtrunA17_Chr6g0460941 | 36.364 | 88 | 55 | 1 | 13 | 99 | 8 | 95 | 2.41e-15 | 70.5 |
| Msa1200120 | MtrunA17_Chr7g0245871 | 32.673 | 101 | 67 | 1 | 13 | 112 | 28 | 128 | 6.74e-15 | 72.8 |
| Msa1200120 | MtrunA17_Chr4g0046201 | 32.184 | 87 | 59 | 0 | 12 | 98 | 6 | 92 | 5.67e-14 | 70.5 |
| Msa1200120 | MtrunA17_Chr7g0245861 | 39.326 | 89 | 51 | 2 | 13 | 98 | 13 | 101 | 4.04e-13 | 65.5 |
| Msa1200120 | MtrunA17_Chr2g0326041 | 58.333 | 48 | 17 | 1 | 13 | 60 | 34 | 78 | 2.84e-12 | 61.6 |
| Msa1200120 | MtrunA17_Chr8g0374581 | 33.981 | 103 | 60 | 2 | 11 | 105 | 7 | 109 | 3.71e-12 | 64.7 |
| Msa1200120 | MtrunA17_Chr6g0449311 | 45.000 | 80 | 43 | 1 | 43 | 121 | 4 | 83 | 1.04e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1200120 | AT3G13850.1 | 75.676 | 111 | 27 | 0 | 11 | 121 | 35 | 145 | 1.97e-55 | 181 |
| Msa1200120 | AT1G72980.1 | 51.261 | 119 | 58 | 0 | 9 | 127 | 10 | 128 | 1.69e-37 | 133 |
| Msa1200120 | AT3G47870.1 | 52.294 | 109 | 52 | 0 | 9 | 117 | 33 | 141 | 1.37e-31 | 120 |
| Msa1200120 | AT5G63090.4 | 37.903 | 124 | 77 | 0 | 5 | 128 | 4 | 127 | 3.79e-26 | 102 |
| Msa1200120 | AT5G63090.3 | 37.903 | 124 | 77 | 0 | 5 | 128 | 4 | 127 | 3.79e-26 | 102 |
| Msa1200120 | AT5G63090.2 | 37.903 | 124 | 77 | 0 | 5 | 128 | 4 | 127 | 3.79e-26 | 102 |
| Msa1200120 | AT5G63090.1 | 37.903 | 124 | 77 | 0 | 5 | 128 | 4 | 127 | 3.79e-26 | 102 |
| Msa1200120 | AT1G65620.1 | 41.071 | 112 | 66 | 0 | 6 | 117 | 3 | 114 | 7.53e-26 | 102 |
| Msa1200120 | AT1G65620.4 | 41.071 | 112 | 66 | 0 | 6 | 117 | 3 | 114 | 7.53e-26 | 102 |
| Msa1200120 | AT1G65620.3 | 41.071 | 112 | 66 | 0 | 6 | 117 | 3 | 114 | 7.53e-26 | 102 |
| Msa1200120 | AT1G65620.5 | 41.071 | 112 | 66 | 0 | 6 | 117 | 3 | 114 | 7.53e-26 | 102 |
| Msa1200120 | AT1G65620.2 | 41.071 | 112 | 66 | 0 | 6 | 117 | 3 | 114 | 7.53e-26 | 102 |
| Msa1200120 | AT3G27650.1 | 40.594 | 101 | 60 | 0 | 6 | 106 | 33 | 133 | 5.24e-24 | 95.9 |
| Msa1200120 | AT1G31320.1 | 43.678 | 87 | 49 | 0 | 13 | 99 | 14 | 100 | 1.21e-22 | 92.8 |
| Msa1200120 | AT3G50510.1 | 40.777 | 103 | 61 | 0 | 13 | 115 | 13 | 115 | 1.94e-22 | 92.8 |
| Msa1200120 | AT3G50510.2 | 40.777 | 103 | 61 | 0 | 13 | 115 | 13 | 115 | 1.94e-22 | 92.8 |
| Msa1200120 | AT2G30130.1 | 36.036 | 111 | 71 | 0 | 10 | 120 | 6 | 116 | 9.31e-22 | 90.9 |
| Msa1200120 | AT3G26660.1 | 34.234 | 111 | 73 | 0 | 13 | 123 | 6 | 116 | 3.87e-21 | 87.0 |
| Msa1200120 | AT2G42430.1 | 38.261 | 115 | 66 | 3 | 2 | 113 | 5 | 117 | 6.90e-21 | 89.7 |
| Msa1200120 | AT5G66870.1 | 35.185 | 108 | 70 | 0 | 8 | 115 | 3 | 110 | 1.05e-20 | 90.5 |
| Msa1200120 | AT3G26620.1 | 33.945 | 109 | 72 | 0 | 13 | 121 | 6 | 114 | 1.20e-20 | 85.9 |
| Msa1200120 | AT1G16530.1 | 33.607 | 122 | 80 | 1 | 5 | 125 | 7 | 128 | 1.25e-20 | 87.0 |
| Msa1200120 | AT3G58190.1 | 40.196 | 102 | 60 | 1 | 13 | 113 | 12 | 113 | 3.61e-20 | 87.4 |
| Msa1200120 | AT2G28500.1 | 40.000 | 105 | 58 | 1 | 13 | 112 | 56 | 160 | 5.15e-20 | 87.0 |
| Msa1200120 | AT1G06280.1 | 33.582 | 134 | 86 | 1 | 11 | 144 | 23 | 153 | 1.05e-19 | 85.9 |
| Msa1200120 | AT1G07900.1 | 36.585 | 123 | 67 | 2 | 13 | 124 | 34 | 156 | 1.16e-19 | 85.1 |
| Msa1200120 | AT3G03760.1 | 39.604 | 101 | 60 | 1 | 13 | 112 | 52 | 152 | 1.94e-19 | 86.7 |
| Msa1200120 | AT2G30340.2 | 31.707 | 123 | 84 | 0 | 8 | 130 | 49 | 171 | 4.18e-19 | 85.5 |
| Msa1200120 | AT2G23660.2 | 37.000 | 100 | 61 | 1 | 9 | 108 | 2 | 99 | 5.08e-19 | 85.9 |
| Msa1200120 | AT2G23660.3 | 37.000 | 100 | 61 | 1 | 9 | 108 | 2 | 99 | 5.08e-19 | 85.9 |
| Msa1200120 | AT2G23660.1 | 37.000 | 100 | 61 | 1 | 9 | 108 | 2 | 99 | 5.08e-19 | 85.9 |
| Msa1200120 | AT2G30340.1 | 31.707 | 123 | 84 | 0 | 8 | 130 | 48 | 170 | 5.18e-19 | 85.1 |
| Msa1200120 | AT2G42440.1 | 36.000 | 100 | 63 | 1 | 13 | 111 | 8 | 107 | 2.21e-18 | 83.2 |
| Msa1200120 | AT4G00210.1 | 37.500 | 104 | 64 | 1 | 13 | 115 | 12 | 115 | 4.41e-18 | 81.6 |
| Msa1200120 | AT3G11090.1 | 26.846 | 149 | 98 | 1 | 8 | 145 | 7 | 155 | 8.85e-18 | 79.3 |
| Msa1200120 | AT2G19820.1 | 37.383 | 107 | 66 | 1 | 1 | 106 | 1 | 107 | 1.38e-17 | 77.8 |
| Msa1200120 | AT5G06080.1 | 34.211 | 114 | 74 | 1 | 12 | 124 | 7 | 120 | 3.23e-17 | 78.2 |
| Msa1200120 | AT2G45420.1 | 37.000 | 100 | 62 | 1 | 15 | 113 | 40 | 139 | 3.94e-17 | 79.7 |
| Msa1200120 | AT4G00220.1 | 37.000 | 100 | 62 | 1 | 15 | 113 | 20 | 119 | 4.88e-17 | 79.0 |
| Msa1200120 | AT2G40470.2 | 33.945 | 109 | 72 | 0 | 8 | 116 | 16 | 124 | 1.10e-16 | 77.4 |
| Msa1200120 | AT2G40470.1 | 29.577 | 142 | 91 | 2 | 8 | 149 | 41 | 173 | 1.13e-16 | 77.8 |
| Msa1200120 | AT5G15060.1 | 40.741 | 81 | 46 | 1 | 5 | 83 | 10 | 90 | 1.61e-16 | 75.5 |
| Msa1200120 | AT2G31310.1 | 35.294 | 102 | 65 | 1 | 13 | 113 | 8 | 109 | 3.13e-16 | 75.9 |
| Msa1200120 | AT5G35900.1 | 34.906 | 106 | 62 | 2 | 10 | 108 | 3 | 108 | 2.35e-15 | 73.9 |
| Msa1200120 | AT2G45410.1 | 36.522 | 115 | 69 | 2 | 15 | 125 | 19 | 133 | 1.78e-14 | 70.9 |
Find 43 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAATGCACACAAATTATT+TGG | 0.164688 | 8_1:+52445714 | Msa1200120:CDS |
| TGTGATGAAAGAAATGAATT+AGG | 0.196401 | 8_1:+52446302 | Msa1200120:CDS |
| CAAATAATTTGTGTGCATTA+AGG | 0.234733 | 8_1:-52445713 | None:intergenic |
| CCACCAGGATCTATTATTTC+CGG | 0.304023 | 8_1:+52446029 | Msa1200120:CDS |
| TGTCTATCATGAGGAAAATA+AGG | 0.316434 | 8_1:-52445681 | None:intergenic |
| ATTTCTTGACCCTCCTCTTA+AGG | 0.336429 | 8_1:+52445764 | Msa1200120:CDS |
| ATGAATTCAGACTCAATGTT+AGG | 0.337044 | 8_1:+52445996 | Msa1200120:CDS |
| CAACCAATACAAGTTAATTA+TGG | 0.343182 | 8_1:+52445960 | Msa1200120:CDS |
| TCACCATAATTAACTTGTAT+TGG | 0.367426 | 8_1:-52445963 | None:intergenic |
| GTGATGAAAGAAATGAATTA+GGG | 0.378390 | 8_1:+52446303 | Msa1200120:CDS |
| TCACAAGGTATATCAAGAAT+TGG | 0.381403 | 8_1:-52446284 | None:intergenic |
| ACAAGAACATGGACAGGAAC+AGG | 0.424046 | 8_1:+52446106 | Msa1200120:CDS |
| CATCACTAGCATTACTACTT+TGG | 0.436790 | 8_1:-52446247 | None:intergenic |
| CTATCATCTTTGTCATTGCA+TGG | 0.444287 | 8_1:+52446224 | Msa1200120:CDS |
| TTTACACCTGCATCATCAAC+TGG | 0.451044 | 8_1:-52446982 | None:intergenic |
| ACAACCACCAACAGGATCAT+TGG | 0.454245 | 8_1:-52445829 | None:intergenic |
| ATAATGAGCCGGCGTGGTAC+CGG | 0.469332 | 8_1:-52446048 | None:intergenic |
| CTCATGGCTTGATCCTTAAG+AGG | 0.493595 | 8_1:-52445777 | None:intergenic |
| TGTCCATGTTCTTGTAATTG+TGG | 0.499816 | 8_1:-52446098 | None:intergenic |
| TATTTGTAACAACCACCAAC+AGG | 0.515920 | 8_1:-52445837 | None:intergenic |
| TAAGGTGCTAGAATGCAATC+AGG | 0.530324 | 8_1:-52445663 | None:intergenic |
| AATAATATGCAGTGATGAAG+AGG | 0.551632 | 8_1:+52446830 | Msa1200120:intron |
| GTACCGGAAATAATAGATCC+TGG | 0.571201 | 8_1:-52446032 | None:intergenic |
| AATTCATTTCTTTCATCACA+AGG | 0.571373 | 8_1:-52446299 | None:intergenic |
| CCGGAGAAATACTTCACCAC+AGG | 0.572095 | 8_1:+52446333 | Msa1200120:CDS |
| ACAATTACAAGAACATGGAC+AGG | 0.573277 | 8_1:+52446100 | Msa1200120:CDS |
| CCTGTGGTGAAGTATTTCTC+CGG | 0.574676 | 8_1:-52446333 | None:intergenic |
| GATCAAGATCATGATCTGAA+AGG | 0.590787 | 8_1:+52446927 | Msa1200120:CDS |
| TATTATTTCCGGTACCACGC+CGG | 0.602981 | 8_1:+52446040 | Msa1200120:CDS |
| AATTGTCTTTGTCTATCATG+AGG | 0.605255 | 8_1:-52445690 | None:intergenic |
| CGGGCCAATGATCCTGTTGG+TGG | 0.607502 | 8_1:+52445825 | Msa1200120:CDS |
| ATGGCTTGATCCTTAAGAGG+AGG | 0.610526 | 8_1:-52445774 | None:intergenic |
| ACATTGTAATGATAATGAGC+CGG | 0.614117 | 8_1:-52446059 | None:intergenic |
| TGGCTTGATCCTTAAGAGGA+GGG | 0.621992 | 8_1:-52445773 | None:intergenic |
| GATGGATTAATTAAAACAGA+TGG | 0.626567 | 8_1:+52446870 | Msa1200120:CDS |
| ACATGCAGCACATGCTTGAG+TGG | 0.644890 | 8_1:-52445616 | None:intergenic |
| AATGAATTAGGGTTCGACTC+CGG | 0.645373 | 8_1:+52446314 | Msa1200120:CDS |
| ATGCGGGCCAATGATCCTGT+TGG | 0.648354 | 8_1:+52445822 | Msa1200120:CDS |
| AAAACATAATAATAATTGGG+GGG | 0.653700 | 8_1:+52446193 | Msa1200120:CDS |
| GTGCCACAATTACAAGAACA+TGG | 0.656427 | 8_1:+52446095 | Msa1200120:CDS |
| CTCTTAAGGATCAAGCCATG+AGG | 0.688822 | 8_1:+52445778 | Msa1200120:CDS |
| CCGGAAATAATAGATCCTGG+TGG | 0.706694 | 8_1:-52446029 | None:intergenic |
| GTAATGATAATGAGCCGGCG+TGG | 0.725142 | 8_1:-52446054 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCATTTATTGTTTTTTAT+AGG | - | chr8_1:52446515-52446534 | None:intergenic | 10.0% |
| !! | TAAAAAACAATAAATGAAAT+TGG | + | chr8_1:52446516-52446535 | Msa1200120:intron | 10.0% |
| !!! | TTTCATTTATTGTTTTTTAT+AGG | - | chr8_1:52446515-52446534 | None:intergenic | 10.0% |
| !! | TAAAAAACAATAAATGAAAT+TGG | + | chr8_1:52446516-52446535 | Msa1200120:intron | 10.0% |
| !! | TGCAAAAACATAATAATAAT+TGG | + | chr8_1:52446189-52446208 | Msa1200120:CDS | 15.0% |
| !! | GCAAAAACATAATAATAATT+GGG | + | chr8_1:52446190-52446209 | Msa1200120:CDS | 15.0% |
| !! | CAAAAACATAATAATAATTG+GGG | + | chr8_1:52446191-52446210 | Msa1200120:CDS | 15.0% |
| !! | AAAAACATAATAATAATTGG+GGG | + | chr8_1:52446192-52446211 | Msa1200120:CDS | 15.0% |
| !! | ATATGTCTATAATGTATAAT+TGG | + | chr8_1:52446630-52446649 | Msa1200120:intron | 15.0% |
| !!! | ATAATTGGATTTGAAATTAA+TGG | + | chr8_1:52446645-52446664 | Msa1200120:intron | 15.0% |
| !! | TATATTGTTTAAATCAATGA+TGG | - | chr8_1:52446696-52446715 | None:intergenic | 15.0% |
| !! | TGCAAAAACATAATAATAAT+TGG | + | chr8_1:52446189-52446208 | Msa1200120:CDS | 15.0% |
| !! | GCAAAAACATAATAATAATT+GGG | + | chr8_1:52446190-52446209 | Msa1200120:CDS | 15.0% |
| !! | CAAAAACATAATAATAATTG+GGG | + | chr8_1:52446191-52446210 | Msa1200120:CDS | 15.0% |
| !! | AAAAACATAATAATAATTGG+GGG | + | chr8_1:52446192-52446211 | Msa1200120:CDS | 15.0% |
| !! | ATATGTCTATAATGTATAAT+TGG | + | chr8_1:52446630-52446649 | Msa1200120:intron | 15.0% |
| !!! | ATAATTGGATTTGAAATTAA+TGG | + | chr8_1:52446645-52446664 | Msa1200120:intron | 15.0% |
| !! | TATATTGTTTAAATCAATGA+TGG | - | chr8_1:52446696-52446715 | None:intergenic | 15.0% |
| !! | AAAACATAATAATAATTGGG+GGG | + | chr8_1:52446193-52446212 | Msa1200120:CDS | 20.0% |
| !! | CATTATAGACATATATTACT+AGG | - | chr8_1:52446624-52446643 | None:intergenic | 20.0% |
| !! | AAAACATAATAATAATTGGG+GGG | + | chr8_1:52446193-52446212 | Msa1200120:CDS | 20.0% |
| !! | CATTATAGACATATATTACT+AGG | - | chr8_1:52446624-52446643 | None:intergenic | 20.0% |
| !! | CAAATAATTTGTGTGCATTA+AGG | - | chr8_1:52445716-52445735 | None:intergenic | 25.0% |
| ! | CTTAATGCACACAAATTATT+TGG | + | chr8_1:52445714-52445733 | Msa1200120:CDS | 25.0% |
| !!! | TCATTTTTCAATCTGATATG+CGG | + | chr8_1:52445805-52445824 | Msa1200120:CDS | 25.0% |
| ! | CAACCAATACAAGTTAATTA+TGG | + | chr8_1:52445960-52445979 | Msa1200120:CDS | 25.0% |
| !!! | TCACCATAATTAACTTGTAT+TGG | - | chr8_1:52445966-52445985 | None:intergenic | 25.0% |
| ! | AATTCATTTCTTTCATCACA+AGG | - | chr8_1:52446302-52446321 | None:intergenic | 25.0% |
| ! | TGTGATGAAAGAAATGAATT+AGG | + | chr8_1:52446302-52446321 | Msa1200120:CDS | 25.0% |
| ! | GTGATGAAAGAAATGAATTA+GGG | + | chr8_1:52446303-52446322 | Msa1200120:CDS | 25.0% |
| !!! | ACATTGAAAGAGTATTATGT+AGG | + | chr8_1:52446442-52446461 | Msa1200120:intron | 25.0% |
| !!! | GATGGATTAATTAAAACAGA+TGG | + | chr8_1:52446870-52446889 | Msa1200120:CDS | 25.0% |
| !! | CAAATAATTTGTGTGCATTA+AGG | - | chr8_1:52445716-52445735 | None:intergenic | 25.0% |
| ! | CTTAATGCACACAAATTATT+TGG | + | chr8_1:52445714-52445733 | Msa1200120:CDS | 25.0% |
| !!! | TCATTTTTCAATCTGATATG+CGG | + | chr8_1:52445805-52445824 | Msa1200120:CDS | 25.0% |
| ! | CAACCAATACAAGTTAATTA+TGG | + | chr8_1:52445960-52445979 | Msa1200120:CDS | 25.0% |
| !!! | TCACCATAATTAACTTGTAT+TGG | - | chr8_1:52445966-52445985 | None:intergenic | 25.0% |
| ! | AATTCATTTCTTTCATCACA+AGG | - | chr8_1:52446302-52446321 | None:intergenic | 25.0% |
| ! | TGTGATGAAAGAAATGAATT+AGG | + | chr8_1:52446302-52446321 | Msa1200120:CDS | 25.0% |
| ! | GTGATGAAAGAAATGAATTA+GGG | + | chr8_1:52446303-52446322 | Msa1200120:CDS | 25.0% |
| !!! | ACATTGAAAGAGTATTATGT+AGG | + | chr8_1:52446442-52446461 | Msa1200120:intron | 25.0% |
| !!! | GATGGATTAATTAAAACAGA+TGG | + | chr8_1:52446870-52446889 | Msa1200120:CDS | 25.0% |
| TGTCTATCATGAGGAAAATA+AGG | - | chr8_1:52445684-52445703 | None:intergenic | 30.0% | |
| AATTGTCTTTGTCTATCATG+AGG | - | chr8_1:52445693-52445712 | None:intergenic | 30.0% | |
| TTGAAAAATGATTGTCCTCA+TGG | - | chr8_1:52445796-52445815 | None:intergenic | 30.0% | |
| !! | CATTTTTCAATCTGATATGC+GGG | + | chr8_1:52445806-52445825 | Msa1200120:CDS | 30.0% |
| ATGAATTCAGACTCAATGTT+AGG | + | chr8_1:52445996-52446015 | Msa1200120:CDS | 30.0% | |
| ! | TTAGGTTTTTATAATCCACC+AGG | + | chr8_1:52446014-52446033 | Msa1200120:CDS | 30.0% |
| ! | ACATTGTAATGATAATGAGC+CGG | - | chr8_1:52446062-52446081 | None:intergenic | 30.0% |
| TCACAAGGTATATCAAGAAT+TGG | - | chr8_1:52446287-52446306 | None:intergenic | 30.0% | |
| AGAAAGAAAAAAGAAACCTG+TGG | - | chr8_1:52446352-52446371 | None:intergenic | 30.0% | |
| AGAAATATGGTTAGTGGTAT+GGG | + | chr8_1:52446415-52446434 | Msa1200120:intron | 30.0% | |
| !! | TTGAAAGAGTATTATGTAGG+AGG | + | chr8_1:52446445-52446464 | Msa1200120:intron | 30.0% |
| ! | ATCTAACATGATCCAGTTTT+TGG | + | chr8_1:52446805-52446824 | Msa1200120:intron | 30.0% |
| GCATATTATTAGCCAAAAAC+TGG | - | chr8_1:52446820-52446839 | None:intergenic | 30.0% | |
| AATAATATGCAGTGATGAAG+AGG | + | chr8_1:52446830-52446849 | Msa1200120:intron | 30.0% | |
| !!! | GTTTTGTTTAAGATAGACGA+TGG | + | chr8_1:52446852-52446871 | Msa1200120:CDS | 30.0% |
| TGTCTATCATGAGGAAAATA+AGG | - | chr8_1:52445684-52445703 | None:intergenic | 30.0% | |
| AATTGTCTTTGTCTATCATG+AGG | - | chr8_1:52445693-52445712 | None:intergenic | 30.0% | |
| TTGAAAAATGATTGTCCTCA+TGG | - | chr8_1:52445796-52445815 | None:intergenic | 30.0% | |
| !! | CATTTTTCAATCTGATATGC+GGG | + | chr8_1:52445806-52445825 | Msa1200120:CDS | 30.0% |
| ATGAATTCAGACTCAATGTT+AGG | + | chr8_1:52445996-52446015 | Msa1200120:CDS | 30.0% | |
| ! | TTAGGTTTTTATAATCCACC+AGG | + | chr8_1:52446014-52446033 | Msa1200120:CDS | 30.0% |
| ! | ACATTGTAATGATAATGAGC+CGG | - | chr8_1:52446062-52446081 | None:intergenic | 30.0% |
| TCACAAGGTATATCAAGAAT+TGG | - | chr8_1:52446287-52446306 | None:intergenic | 30.0% | |
| AGAAAGAAAAAAGAAACCTG+TGG | - | chr8_1:52446352-52446371 | None:intergenic | 30.0% | |
| AGAAATATGGTTAGTGGTAT+GGG | + | chr8_1:52446415-52446434 | Msa1200120:intron | 30.0% | |
| !! | TTGAAAGAGTATTATGTAGG+AGG | + | chr8_1:52446445-52446464 | Msa1200120:intron | 30.0% |
| ! | ATCTAACATGATCCAGTTTT+TGG | + | chr8_1:52446805-52446824 | Msa1200120:intron | 30.0% |
| GCATATTATTAGCCAAAAAC+TGG | - | chr8_1:52446820-52446839 | None:intergenic | 30.0% | |
| AATAATATGCAGTGATGAAG+AGG | + | chr8_1:52446830-52446849 | Msa1200120:intron | 30.0% | |
| !!! | GTTTTGTTTAAGATAGACGA+TGG | + | chr8_1:52446852-52446871 | Msa1200120:CDS | 30.0% |
| TATTTGTAACAACCACCAAC+AGG | - | chr8_1:52445840-52445859 | None:intergenic | 35.0% | |
| TGTCCATGTTCTTGTAATTG+TGG | - | chr8_1:52446101-52446120 | None:intergenic | 35.0% | |
| ACAATTACAAGAACATGGAC+AGG | + | chr8_1:52446100-52446119 | Msa1200120:CDS | 35.0% | |
| CTATCATCTTTGTCATTGCA+TGG | + | chr8_1:52446224-52446243 | Msa1200120:CDS | 35.0% | |
| CATCACTAGCATTACTACTT+TGG | - | chr8_1:52446250-52446269 | None:intergenic | 35.0% | |
| TTGCATTACCGACAGAAATA+TGG | + | chr8_1:52446402-52446421 | Msa1200120:intron | 35.0% | |
| ! | ACCACTAACCATATTTCTGT+CGG | - | chr8_1:52446413-52446432 | None:intergenic | 35.0% |
| CAGAAATATGGTTAGTGGTA+TGG | + | chr8_1:52446414-52446433 | Msa1200120:intron | 35.0% | |
| GATCAAGATCATGATCTGAA+AGG | + | chr8_1:52446927-52446946 | Msa1200120:CDS | 35.0% | |
| TATTTGTAACAACCACCAAC+AGG | - | chr8_1:52445840-52445859 | None:intergenic | 35.0% | |
| TGTCCATGTTCTTGTAATTG+TGG | - | chr8_1:52446101-52446120 | None:intergenic | 35.0% | |
| ACAATTACAAGAACATGGAC+AGG | + | chr8_1:52446100-52446119 | Msa1200120:CDS | 35.0% | |
| CTATCATCTTTGTCATTGCA+TGG | + | chr8_1:52446224-52446243 | Msa1200120:CDS | 35.0% | |
| CATCACTAGCATTACTACTT+TGG | - | chr8_1:52446250-52446269 | None:intergenic | 35.0% | |
| TTGCATTACCGACAGAAATA+TGG | + | chr8_1:52446402-52446421 | Msa1200120:intron | 35.0% | |
| ! | ACCACTAACCATATTTCTGT+CGG | - | chr8_1:52446413-52446432 | None:intergenic | 35.0% |
| CAGAAATATGGTTAGTGGTA+TGG | + | chr8_1:52446414-52446433 | Msa1200120:intron | 35.0% | |
| GATCAAGATCATGATCTGAA+AGG | + | chr8_1:52446927-52446946 | Msa1200120:CDS | 35.0% | |
| ! | TAAGGTGCTAGAATGCAATC+AGG | - | chr8_1:52445666-52445685 | None:intergenic | 40.0% |
| ATTTCTTGACCCTCCTCTTA+AGG | + | chr8_1:52445764-52445783 | Msa1200120:CDS | 40.0% | |
| CCACCAGGATCTATTATTTC+CGG | + | chr8_1:52446029-52446048 | Msa1200120:CDS | 40.0% | |
| GTACCGGAAATAATAGATCC+TGG | - | chr8_1:52446035-52446054 | None:intergenic | 40.0% | |
| GTGCCACAATTACAAGAACA+TGG | + | chr8_1:52446095-52446114 | Msa1200120:CDS | 40.0% | |
| AATGAATTAGGGTTCGACTC+CGG | + | chr8_1:52446314-52446333 | Msa1200120:CDS | 40.0% | |
| ACCGACAGAAATATGGTTAG+TGG | + | chr8_1:52446409-52446428 | Msa1200120:intron | 40.0% | |
| ! | TAAGGTGCTAGAATGCAATC+AGG | - | chr8_1:52445666-52445685 | None:intergenic | 40.0% |
| ATTTCTTGACCCTCCTCTTA+AGG | + | chr8_1:52445764-52445783 | Msa1200120:CDS | 40.0% | |
| CCACCAGGATCTATTATTTC+CGG | + | chr8_1:52446029-52446048 | Msa1200120:CDS | 40.0% | |
| GTACCGGAAATAATAGATCC+TGG | - | chr8_1:52446035-52446054 | None:intergenic | 40.0% | |
| GTGCCACAATTACAAGAACA+TGG | + | chr8_1:52446095-52446114 | Msa1200120:CDS | 40.0% | |
| AATGAATTAGGGTTCGACTC+CGG | + | chr8_1:52446314-52446333 | Msa1200120:CDS | 40.0% | |
| ACCGACAGAAATATGGTTAG+TGG | + | chr8_1:52446409-52446428 | Msa1200120:intron | 40.0% | |
| TGGCTTGATCCTTAAGAGGA+GGG | - | chr8_1:52445776-52445795 | None:intergenic | 45.0% | |
| ATGGCTTGATCCTTAAGAGG+AGG | - | chr8_1:52445777-52445796 | None:intergenic | 45.0% | |
| CTCATGGCTTGATCCTTAAG+AGG | - | chr8_1:52445780-52445799 | None:intergenic | 45.0% | |
| CTCTTAAGGATCAAGCCATG+AGG | + | chr8_1:52445778-52445797 | Msa1200120:CDS | 45.0% | |
| ACAACCACCAACAGGATCAT+TGG | - | chr8_1:52445832-52445851 | None:intergenic | 45.0% | |
| CCGGAAATAATAGATCCTGG+TGG | - | chr8_1:52446032-52446051 | None:intergenic | 45.0% | |
| TATTATTTCCGGTACCACGC+CGG | + | chr8_1:52446040-52446059 | Msa1200120:CDS | 45.0% | |
| ACAAGAACATGGACAGGAAC+AGG | + | chr8_1:52446106-52446125 | Msa1200120:CDS | 45.0% | |
| ! | CCTGTGGTGAAGTATTTCTC+CGG | - | chr8_1:52446336-52446355 | None:intergenic | 45.0% |
| TGGCTTGATCCTTAAGAGGA+GGG | - | chr8_1:52445776-52445795 | None:intergenic | 45.0% | |
| ATGGCTTGATCCTTAAGAGG+AGG | - | chr8_1:52445777-52445796 | None:intergenic | 45.0% | |
| CTCATGGCTTGATCCTTAAG+AGG | - | chr8_1:52445780-52445799 | None:intergenic | 45.0% | |
| CTCTTAAGGATCAAGCCATG+AGG | + | chr8_1:52445778-52445797 | Msa1200120:CDS | 45.0% | |
| ACAACCACCAACAGGATCAT+TGG | - | chr8_1:52445832-52445851 | None:intergenic | 45.0% | |
| CCGGAAATAATAGATCCTGG+TGG | - | chr8_1:52446032-52446051 | None:intergenic | 45.0% | |
| TATTATTTCCGGTACCACGC+CGG | + | chr8_1:52446040-52446059 | Msa1200120:CDS | 45.0% | |
| ACAAGAACATGGACAGGAAC+AGG | + | chr8_1:52446106-52446125 | Msa1200120:CDS | 45.0% | |
| ! | CCTGTGGTGAAGTATTTCTC+CGG | - | chr8_1:52446336-52446355 | None:intergenic | 45.0% |
| ACATGCAGCACATGCTTGAG+TGG | - | chr8_1:52445619-52445638 | None:intergenic | 50.0% | |
| ! | GTAATGATAATGAGCCGGCG+TGG | - | chr8_1:52446057-52446076 | None:intergenic | 50.0% |
| CCGGAGAAATACTTCACCAC+AGG | + | chr8_1:52446333-52446352 | Msa1200120:CDS | 50.0% | |
| ACATGCAGCACATGCTTGAG+TGG | - | chr8_1:52445619-52445638 | None:intergenic | 50.0% | |
| ! | GTAATGATAATGAGCCGGCG+TGG | - | chr8_1:52446057-52446076 | None:intergenic | 50.0% |
| CCGGAGAAATACTTCACCAC+AGG | + | chr8_1:52446333-52446352 | Msa1200120:CDS | 50.0% | |
| ATGCGGGCCAATGATCCTGT+TGG | + | chr8_1:52445822-52445841 | Msa1200120:CDS | 55.0% | |
| ATAATGAGCCGGCGTGGTAC+CGG | - | chr8_1:52446051-52446070 | None:intergenic | 55.0% | |
| ATGCGGGCCAATGATCCTGT+TGG | + | chr8_1:52445822-52445841 | Msa1200120:CDS | 55.0% | |
| ATAATGAGCCGGCGTGGTAC+CGG | - | chr8_1:52446051-52446070 | None:intergenic | 55.0% | |
| CGGGCCAATGATCCTGTTGG+TGG | + | chr8_1:52445825-52445844 | Msa1200120:CDS | 60.0% | |
| CGGGCCAATGATCCTGTTGG+TGG | + | chr8_1:52445825-52445844 | Msa1200120:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 52445591 | 52446989 | 52445591 | ID=Msa1200120;Name=Msa1200120 |
| chr8_1 | mRNA | 52445591 | 52446989 | 52445591 | ID=Msa1200120-mRNA-1;Parent=Msa1200120;Name=Msa1200120-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|0|0|1|1|1|2|0|303 |
| chr8_1 | exon | 52445591 | 52446354 | 52445591 | ID=Msa1200120-mRNA-1:exon:16744;Parent=Msa1200120-mRNA-1 |
| chr8_1 | exon | 52446842 | 52446989 | 52446842 | ID=Msa1200120-mRNA-1:exon:16745;Parent=Msa1200120-mRNA-1 |
| chr8_1 | CDS | 52445591 | 52446354 | 52445591 | ID=Msa1200120-mRNA-1:cds;Parent=Msa1200120-mRNA-1 |
| chr8_1 | CDS | 52446842 | 52446989 | 52446842 | ID=Msa1200120-mRNA-1:cds;Parent=Msa1200120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
