AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1200220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1200220 MtrunA17_Chr7g0270371 87.838 74 9 0 2 75 239 312 1.57e-43 144
Msa1200220 MtrunA17_Chr1g0194201 85.135 74 11 0 2 75 239 312 1.08e-42 142
Msa1200220 MtrunA17_Chr7g0246591 82.432 74 13 0 2 75 305 378 3.76e-42 142
Msa1200220 MtrunA17_Chr1g0193081 83.784 74 12 0 2 75 239 312 1.23e-41 139
Msa1200220 MtrunA17_Chr2g0277011 83.784 74 12 0 2 75 254 327 4.43e-40 135
Msa1200220 MtrunA17_Chr8g0350311 78.378 74 16 0 2 75 303 376 4.32e-39 134
Msa1200220 MtrunA17_Chr2g0320011 82.432 74 13 0 2 75 252 325 5.87e-39 132
Msa1200220 MtrunA17_Chr2g0284091 77.027 74 17 0 2 75 204 277 1.42e-38 131
Msa1200220 MtrunA17_Chr7g0273601 47.222 72 37 1 3 73 272 343 3.66e-17 73.9
Msa1200220 MtrunA17_Chr5g0396361 45.763 59 32 0 3 61 305 363 5.37e-17 73.6
Msa1200220 MtrunA17_Chr4g0030241 39.474 76 45 1 2 76 65 140 6.93e-17 70.5
Msa1200220 MtrunA17_Chr4g0066691 49.153 59 30 0 3 61 269 327 8.96e-17 72.8
Msa1200220 MtrunA17_Chr4g0002001 48.333 60 31 0 3 62 185 244 1.03e-16 72.0
Msa1200220 MtrunA17_Chr4g0045841 38.889 72 44 0 2 73 219 290 1.03e-16 72.4
Msa1200220 MtrunA17_Chr4g0051261 44.068 59 33 0 3 61 168 226 1.47e-16 71.6
Msa1200220 MtrunA17_Chr1g0191221 45.833 72 38 1 3 73 287 358 1.64e-16 72.0
Msa1200220 MtrunA17_Chr2g0293491 44.068 59 33 0 3 61 168 226 3.06e-16 70.5
Msa1200220 MtrunA17_Chr2g0286421 47.458 59 31 0 3 61 267 325 3.37e-16 71.2
Msa1200220 MtrunA17_Chr8g0385971 44.444 72 39 1 3 73 255 326 4.65e-16 70.9
Msa1200220 MtrunA17_Chr8g0377071 50.000 56 28 0 3 58 549 604 6.01e-16 70.5
Msa1200220 MtrunA17_Chr3g0122781 50.000 56 28 0 3 58 580 635 6.97e-16 70.5
Msa1200220 MtrunA17_Chr4g0030231 45.161 62 34 0 2 63 204 265 7.00e-16 70.1
Msa1200220 MtrunA17_Chr8g0359091 49.333 75 34 3 2 73 194 267 1.46e-15 69.3
Msa1200220 MtrunA17_Chr3g0131861 49.153 59 30 0 3 61 262 320 1.75e-15 69.3
Msa1200220 MtrunA17_Chr2g0317501 44.068 59 33 0 3 61 299 357 2.42e-15 68.9
Msa1200220 MtrunA17_Chr8g0383451 40.625 64 38 0 3 66 163 226 2.57e-15 68.6
Msa1200220 MtrunA17_Chr7g0248461 49.123 57 29 0 2 58 202 258 2.79e-15 68.6
Msa1200220 MtrunA17_Chr8g0378831 40.845 71 42 0 2 72 197 267 4.07e-15 67.8
Msa1200220 MtrunA17_Chr4g0040141 42.373 59 34 0 3 61 294 352 4.09e-15 68.2
Msa1200220 MtrunA17_Chr6g0486031 40.789 76 43 2 2 75 278 353 4.86e-15 67.8
Msa1200220 MtrunA17_Chr8g0348481 49.123 57 29 0 2 58 201 257 4.99e-15 67.8
Msa1200220 MtrunA17_Chr1g0201571 45.763 59 32 0 3 61 291 349 5.78e-15 67.8
Msa1200220 MtrunA17_Chr5g0443351 46.667 75 36 3 2 73 190 263 6.48e-15 67.4
Msa1200220 MtrunA17_Chr8g0387401 45.614 57 31 0 2 58 216 272 6.52e-15 67.4
Msa1200220 MtrunA17_Chr4g0057791 46.429 56 30 0 3 58 384 439 8.82e-15 67.0
Msa1200220 MtrunA17_Chr4g0030151 38.356 73 44 1 2 73 203 275 1.10e-14 66.6
Msa1200220 MtrunA17_Chr2g0324461 42.105 57 33 0 3 59 306 362 1.41e-14 66.6
Msa1200220 MtrunA17_Chr3g0141871 41.096 73 42 1 2 73 197 269 2.02e-14 65.9
Msa1200220 MtrunA17_Chr1g0187371 42.373 59 34 0 3 61 190 248 2.10e-14 65.9
Msa1200220 MtrunA17_Chr5g0397261 36.620 71 45 0 2 72 205 275 2.22e-14 65.9
Msa1200220 MtrunA17_Chr6g0453711 44.068 59 33 0 3 61 275 333 2.89e-14 65.9
Msa1200220 MtrunA17_Chr6g0482681 46.667 75 36 3 2 73 257 330 3.18e-14 65.5
Msa1200220 MtrunA17_Chr6g0483151 36.364 77 47 1 2 76 175 251 3.65e-14 65.5
Msa1200220 MtrunA17_Chr8g0358921 45.000 60 33 0 2 61 215 274 4.99e-14 64.7
Msa1200220 MtrunA17_Chr8g0390341 47.273 55 29 0 2 56 291 345 5.48e-14 64.7
Msa1200220 MtrunA17_Chr4g0061141 42.373 59 34 0 3 61 270 328 7.42e-14 64.7
Msa1200220 MtrunA17_Chr7g0218071 40.678 59 35 0 3 61 285 343 8.26e-14 64.3
Msa1200220 MtrunA17_Chr3g0102571 40.299 67 40 0 2 68 245 311 2.09e-13 63.2
Msa1200220 MtrunA17_Chr8g0392811 45.333 75 37 3 2 73 285 358 2.16e-13 63.2
Msa1200220 MtrunA17_Chr4g0065851 45.333 75 37 3 2 73 193 266 2.30e-13 63.2
Msa1200220 MtrunA17_Chr3g0096631 44.000 75 38 3 2 73 193 266 3.45e-13 62.8
Msa1200220 MtrunA17_Chr8g0369241 49.091 55 27 1 2 56 306 359 3.79e-13 62.4
Msa1200220 MtrunA17_Chr2g0287271 44.000 75 38 3 2 73 193 266 6.74e-13 61.6
Msa1200220 MtrunA17_Chr3g0130781 42.647 68 31 1 3 62 195 262 8.26e-13 61.6
Msa1200220 MtrunA17_Chr3g0093391 41.071 56 33 0 3 58 202 257 2.99e-12 60.1
Msa1200220 MtrunA17_Chr3g0093571 41.071 56 33 0 3 58 204 259 5.80e-12 59.3
Msa1200220 MtrunA17_Chr8g0339221 40.351 57 34 0 2 58 162 218 7.54e-12 58.9
Msa1200220 MtrunA17_Chr8g0369451 36.667 60 38 0 2 61 162 221 9.75e-12 58.5
Msa1200220 MtrunA17_Chr2g0314321 58.333 48 20 0 16 63 225 272 1.44e-11 58.2
Msa1200220 MtrunA17_Chr3g0099951 37.931 58 36 0 2 59 177 234 3.03e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1200220 AT3G05840.2 85.135 74 11 0 2 75 237 310 2.64e-42 141
Msa1200220 AT3G05840.1 85.135 74 11 0 2 75 237 310 2.64e-42 141
Msa1200220 AT5G26751.1 85.135 74 11 0 2 75 233 306 3.83e-42 141
Msa1200220 AT5G14640.1 86.486 74 10 0 2 75 238 311 1.37e-41 140
Msa1200220 AT5G14640.2 86.486 74 10 0 2 75 238 311 1.37e-41 140
Msa1200220 AT1G57870.1 83.784 74 12 0 2 75 246 319 2.40e-41 139
Msa1200220 AT1G57870.4 83.784 74 12 0 2 75 246 319 2.40e-41 139
Msa1200220 AT1G57870.2 83.784 74 12 0 2 75 246 319 2.40e-41 139
Msa1200220 AT1G09840.11 82.432 74 13 0 2 75 120 193 2.56e-41 136
Msa1200220 AT1G09840.3 82.432 74 13 0 2 75 247 320 3.89e-41 139
Msa1200220 AT1G09840.7 82.432 74 13 0 2 75 247 320 3.89e-41 139
Msa1200220 AT1G09840.10 82.432 74 13 0 2 75 247 320 3.89e-41 139
Msa1200220 AT1G09840.6 82.432 74 13 0 2 75 247 320 3.89e-41 139
Msa1200220 AT1G09840.4 82.432 74 13 0 2 75 247 320 3.89e-41 139
Msa1200220 AT1G09840.1 82.432 74 13 0 2 75 247 320 3.89e-41 139
Msa1200220 AT1G09840.9 82.432 74 13 0 2 75 247 320 3.89e-41 139
Msa1200220 AT1G09840.5 82.432 74 13 0 2 75 247 320 3.89e-41 139
Msa1200220 AT1G09840.8 82.432 74 13 0 2 75 247 320 3.89e-41 139
Msa1200220 AT1G09840.2 82.432 74 13 0 2 75 247 320 3.89e-41 139
Msa1200220 AT1G57870.3 83.784 74 12 0 2 75 246 319 5.85e-40 136
Msa1200220 AT4G00720.1 77.027 74 17 0 2 75 302 375 1.16e-39 135
Msa1200220 AT4G18710.1 79.730 74 15 0 2 75 204 277 1.51e-39 134
Msa1200220 AT1G06390.2 81.081 74 14 0 2 75 234 307 3.48e-39 133
Msa1200220 AT1G06390.1 81.081 74 14 0 2 75 234 307 3.48e-39 133
Msa1200220 AT2G30980.1 81.081 74 14 0 2 75 236 309 5.45e-39 133
Msa1200220 AT4G18710.2 80.282 71 14 0 2 72 198 268 5.39e-37 125
Msa1200220 AT3G61160.5 68.919 74 23 0 2 75 266 339 3.92e-34 119
Msa1200220 AT3G61160.1 68.919 74 23 0 2 75 266 339 6.92e-34 120
Msa1200220 AT3G61160.2 68.919 74 23 0 2 75 273 346 6.93e-34 120
Msa1200220 AT3G61160.4 68.919 74 23 0 2 75 266 339 9.56e-34 119
Msa1200220 AT3G61160.3 68.919 74 23 0 2 75 266 339 1.35e-33 117
Msa1200220 AT3G61160.6 68.919 74 23 0 2 75 273 346 1.57e-33 117
Msa1200220 AT2G38620.4 48.333 60 31 0 3 62 123 182 3.43e-18 75.5
Msa1200220 AT2G38620.2 48.333 60 31 0 3 62 185 244 7.03e-18 75.5
Msa1200220 AT5G63370.5 52.632 57 27 0 2 58 465 521 2.92e-17 74.7
Msa1200220 AT5G63370.10 52.632 57 27 0 2 58 465 521 2.92e-17 74.7
Msa1200220 AT5G63370.7 52.632 57 27 0 2 58 465 521 3.37e-17 74.3
Msa1200220 AT5G63370.8 52.632 57 27 0 2 58 465 521 3.37e-17 74.3
Msa1200220 AT5G63370.4 52.632 57 27 0 2 58 465 521 3.37e-17 74.3
Msa1200220 AT5G63370.6 52.632 57 27 0 2 58 465 521 3.37e-17 74.3
Msa1200220 AT5G63370.1 52.632 57 27 0 2 58 465 521 3.37e-17 74.3
Msa1200220 AT1G73690.1 38.462 78 44 2 2 76 172 248 3.64e-17 74.3
Msa1200220 AT2G46070.3 43.662 71 40 0 2 72 239 309 4.01e-17 73.9
Msa1200220 AT5G63370.9 52.632 57 27 0 2 58 331 387 4.09e-17 73.9
Msa1200220 AT2G46070.2 43.662 71 40 0 2 72 205 275 4.26e-17 73.6
Msa1200220 AT5G63370.2 52.632 57 27 0 2 58 331 387 4.39e-17 73.9
Msa1200220 AT5G63370.3 52.632 57 27 0 2 58 331 387 4.39e-17 73.9
Msa1200220 AT3G59790.1 40.278 72 43 0 2 73 224 295 4.60e-17 73.9
Msa1200220 AT3G48750.1 48.214 56 29 0 3 58 168 223 4.91e-17 73.2
Msa1200220 AT2G46070.1 43.662 71 40 0 2 72 205 275 5.40e-17 73.6
Msa1200220 AT3G54180.1 46.667 60 32 0 3 62 183 242 1.91e-16 71.6
Msa1200220 AT1G54610.1 49.153 59 30 0 3 61 283 341 2.22e-16 72.0
Msa1200220 AT1G54610.3 49.153 59 30 0 3 61 283 341 2.22e-16 72.0
Msa1200220 AT1G54610.2 49.153 59 30 0 3 61 283 341 2.22e-16 72.0
Msa1200220 AT1G67580.1 50.000 56 28 0 3 58 570 625 2.36e-16 72.0
Msa1200220 AT1G67580.2 50.000 56 28 0 3 58 570 625 2.36e-16 72.0
Msa1200220 AT1G71530.3 47.458 59 31 0 3 61 312 370 4.12e-16 71.2
Msa1200220 AT1G71530.1 47.458 59 31 0 3 61 312 370 4.83e-16 71.2
Msa1200220 AT1G71530.2 47.458 59 31 0 3 61 312 370 5.82e-16 70.9
Msa1200220 AT1G76540.1 45.763 59 32 0 3 61 186 244 6.27e-16 70.5
Msa1200220 AT1G01560.3 37.647 85 42 1 2 75 204 288 9.79e-16 70.1
Msa1200220 AT4G01370.1 37.647 85 42 1 2 75 207 291 1.02e-15 70.1
Msa1200220 AT1G53050.2 45.763 59 32 0 3 61 299 357 1.11e-15 70.1
Msa1200220 AT1G53050.1 45.763 59 32 0 3 61 299 357 1.11e-15 70.1
Msa1200220 AT1G66750.1 38.667 75 44 1 3 75 175 249 1.26e-15 69.7
Msa1200220 AT1G18040.1 35.065 77 48 1 2 76 173 249 1.65e-15 69.3
Msa1200220 AT4G10010.1 49.123 57 29 0 3 59 141 197 1.71e-15 69.7
Msa1200220 AT4G10010.2 49.123 57 29 0 3 59 321 377 1.85e-15 69.3
Msa1200220 AT1G20930.1 45.763 59 32 0 3 61 188 246 1.86e-15 68.9
Msa1200220 AT1G09600.1 42.373 59 34 0 3 61 328 386 2.09e-15 69.3
Msa1200220 AT1G57700.1 42.373 59 34 0 3 61 311 369 2.22e-15 69.3
Msa1200220 AT1G01560.2 37.647 85 42 1 2 75 204 288 2.47e-15 68.9
Msa1200220 AT5G50860.2 47.368 57 30 0 3 59 279 335 2.54e-15 68.9
Msa1200220 AT5G50860.1 47.368 57 30 0 3 59 279 335 2.57e-15 68.9
Msa1200220 AT1G33770.1 44.068 59 33 0 3 61 306 364 2.93e-15 68.9
Msa1200220 AT1G03740.2 45.614 57 31 0 3 59 378 434 3.79e-15 68.6
Msa1200220 AT1G03740.1 45.614 57 31 0 3 59 378 434 3.80e-15 68.6
Msa1200220 AT1G73670.1 48.000 75 35 3 2 73 258 331 1.08e-14 67.4
Msa1200220 AT1G18150.3 46.667 75 36 3 2 73 272 345 1.67e-14 66.6
Msa1200220 AT1G18150.2 46.667 75 36 3 2 73 272 345 1.67e-14 66.6
Msa1200220 AT1G18150.1 46.667 75 36 3 2 73 272 345 1.67e-14 66.6
Msa1200220 AT1G18670.2 44.068 59 33 0 3 61 297 355 1.84e-14 66.6
Msa1200220 AT1G18670.1 44.068 59 33 0 3 61 297 355 1.84e-14 66.6
Msa1200220 AT1G18670.3 44.068 59 33 0 3 61 297 355 1.84e-14 66.6
Msa1200220 AT4G11330.1 43.860 57 32 0 2 58 207 263 2.28e-14 66.2
Msa1200220 AT1G74330.3 44.068 59 33 0 3 61 288 346 2.74e-14 66.2
Msa1200220 AT1G74330.2 44.068 59 33 0 3 61 288 346 2.74e-14 66.2
Msa1200220 AT1G74330.1 44.068 59 33 0 3 61 288 346 2.75e-14 66.2
Msa1200220 AT3G14720.2 51.562 64 28 2 2 63 193 255 2.88e-14 65.9
Msa1200220 AT3G14720.3 51.562 64 28 2 2 63 193 255 2.88e-14 65.9
Msa1200220 AT3G45640.1 38.356 73 44 1 2 73 202 274 3.03e-14 65.9
Msa1200220 AT3G05050.3 44.068 59 33 0 3 61 303 361 3.28e-14 65.9
Msa1200220 AT3G05050.2 44.068 59 33 0 3 61 303 361 3.28e-14 65.9
Msa1200220 AT3G05050.1 44.068 59 33 0 3 61 303 361 3.28e-14 65.9
Msa1200220 AT3G01085.3 44.068 59 33 0 3 61 280 338 4.45e-14 65.5
Msa1200220 AT3G01085.1 44.068 59 33 0 3 61 280 338 4.59e-14 65.5
Msa1200220 AT3G01085.2 44.068 59 33 0 3 61 280 338 4.59e-14 65.5
Msa1200220 AT4G22940.1 43.860 57 32 0 3 59 269 325 5.10e-14 65.5
Msa1200220 AT2G42880.2 44.000 75 38 3 2 73 193 266 5.32e-14 65.5
Msa1200220 AT2G38620.3 47.170 53 28 0 3 55 185 237 6.00e-14 64.3
Msa1200220 AT2G38620.1 47.170 53 28 0 3 55 185 237 6.00e-14 64.3
Msa1200220 AT2G42880.1 44.000 75 38 3 2 73 193 266 6.90e-14 65.1
Msa1200220 AT1G53510.1 45.205 73 37 2 2 72 193 264 6.90e-14 65.1
Msa1200220 AT3G14720.1 51.562 64 28 2 2 63 193 255 7.67e-14 64.7
Msa1200220 AT1G01560.4 50.943 53 26 0 2 54 204 256 7.71e-14 64.3
Msa1200220 AT1G01560.1 50.943 53 26 0 2 54 204 256 7.71e-14 64.3
Msa1200220 AT4G22940.2 43.860 57 32 0 3 59 269 325 8.35e-14 64.7
Msa1200220 AT5G19010.1 45.333 75 37 3 2 73 193 266 9.30e-14 64.7
Msa1200220 AT3G18040.3 45.333 75 37 3 2 73 300 373 1.14e-13 64.3
Msa1200220 AT3G18040.4 45.333 75 37 3 2 73 300 373 1.18e-13 64.3
Msa1200220 AT5G39420.1 42.857 56 32 0 3 58 270 325 1.22e-13 64.3
Msa1200220 AT5G44290.6 42.373 59 34 0 3 61 302 360 2.02e-13 63.5
Msa1200220 AT5G44290.2 42.373 59 34 0 3 61 302 360 2.06e-13 63.5
Msa1200220 AT5G44290.5 42.373 59 34 0 3 61 302 360 2.06e-13 63.5
Msa1200220 AT5G44290.4 42.373 59 34 0 3 61 302 360 2.06e-13 63.5
Msa1200220 AT5G44290.1 42.373 59 34 0 3 61 302 360 2.06e-13 63.5
Msa1200220 AT5G44290.3 42.373 59 34 0 3 61 302 360 2.06e-13 63.5
Msa1200220 AT1G07880.2 39.437 71 43 0 2 72 197 267 2.10e-13 63.5
Msa1200220 AT3G18040.1 45.333 75 37 3 2 73 191 264 2.14e-13 63.5
Msa1200220 AT3G18040.5 45.333 75 37 3 2 73 186 259 2.25e-13 63.5
Msa1200220 AT1G59580.2 38.356 73 44 1 2 73 197 269 2.43e-13 63.5
Msa1200220 AT1G59580.1 38.356 73 44 1 2 73 197 269 2.43e-13 63.5
Msa1200220 AT5G44290.7 42.373 59 34 0 3 61 302 360 2.53e-13 63.5
Msa1200220 AT3G18040.2 45.333 75 37 3 2 73 103 176 3.42e-13 63.2
Msa1200220 AT2G43790.1 41.379 58 34 0 2 59 227 284 3.71e-13 62.8
Msa1200220 AT5G35980.2 50.909 55 26 1 2 56 288 341 4.96e-13 62.8
Msa1200220 AT5G35980.1 50.909 55 26 1 2 56 288 341 5.04e-13 62.4
Msa1200220 AT5G35980.3 50.909 55 26 1 2 56 253 306 5.33e-13 62.4
Msa1200220 AT2G01450.3 46.667 60 29 2 2 59 184 242 8.62e-13 62.0
Msa1200220 AT2G01450.1 46.667 60 29 2 2 59 184 242 8.62e-13 62.0
Msa1200220 AT2G01450.2 46.667 60 29 2 2 59 184 242 8.62e-13 62.0
Msa1200220 AT2G01450.4 46.667 60 29 2 2 59 184 242 8.62e-13 62.0
Msa1200220 AT4G13020.4 45.614 57 31 0 2 58 162 218 8.85e-13 62.0
Msa1200220 AT4G13020.8 45.614 57 31 0 2 58 171 227 9.41e-13 61.6
Msa1200220 AT4G13020.7 45.614 57 31 0 2 58 162 218 1.01e-12 61.6
Msa1200220 AT4G13020.6 45.614 57 31 0 2 58 162 218 1.03e-12 61.6
Msa1200220 AT2G18170.1 38.356 73 44 1 2 73 197 269 1.05e-12 61.6
Msa1200220 AT4G13020.5 45.614 57 31 0 2 58 171 227 1.20e-12 61.6
Msa1200220 AT4G13020.2 45.614 57 31 0 2 58 170 226 1.23e-12 61.6
Msa1200220 AT4G13020.3 45.614 57 31 0 2 58 170 226 1.23e-12 61.6
Msa1200220 AT4G13020.1 45.614 57 31 0 2 58 162 218 1.24e-12 61.2
Msa1200220 AT1G10210.2 36.986 73 45 1 2 73 197 269 1.83e-12 60.8
Msa1200220 AT1G10210.3 36.986 73 45 1 2 73 197 269 1.83e-12 60.8
Msa1200220 AT1G10210.1 36.986 73 45 1 2 73 197 269 1.83e-12 60.8
Msa1200220 AT4G28980.3 41.667 60 35 0 2 61 296 355 2.35e-12 60.5
Msa1200220 AT4G28980.1 41.667 60 35 0 2 61 296 355 2.35e-12 60.5
Msa1200220 AT4G28980.2 41.667 60 35 0 2 61 296 355 2.35e-12 60.5
Msa1200220 AT4G19110.2 40.000 60 36 0 2 61 162 221 2.42e-12 60.5
Msa1200220 AT4G19110.1 40.000 60 36 0 2 61 162 221 3.06e-12 60.5
Msa1200220 AT4G19110.3 40.000 60 36 0 2 61 106 165 3.84e-12 60.1
Msa1200220 AT5G63610.1 38.235 68 34 1 3 62 200 267 4.99e-12 59.7
Msa1200220 AT5G45430.1 40.000 60 36 0 2 61 162 221 5.11e-12 59.7
Msa1200220 AT5G45430.2 40.000 60 36 0 2 61 162 221 5.57e-12 59.7
Msa1200220 AT5G64960.1 42.857 56 32 0 3 58 205 260 6.79e-12 59.3
Msa1200220 AT5G64960.2 42.857 56 32 0 3 58 152 207 7.36e-12 59.3
Msa1200220 AT1G71530.4 53.488 43 20 0 3 45 312 354 1.44e-11 58.5
Msa1200220 AT5G10270.1 41.071 56 33 0 3 58 205 260 2.01e-11 58.2
Msa1200220 AT4G36450.1 42.857 56 32 0 2 57 194 249 3.63e-11 57.4
Msa1200220 AT4G01595.1 45.614 57 31 0 16 72 20 76 4.07e-11 55.1
Msa1200220 AT1G07880.1 47.170 53 28 0 2 54 197 249 5.80e-11 56.2

Find 27 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTTGATTTCTTCCCTTGT+TGG 0.201375 8_1:+52611417 None:intergenic
TAATTATACCTAGTATAATT+AGG 0.273993 8_1:+52611387 None:intergenic
TCTTATCAGCCACTGTTTCC+TGG 0.308862 8_1:-52611643 Msa1200220:intron
TAAACTTGGGAAATCTTTGT+AGG 0.332114 8_1:-52611360 Msa1200220:three_prime_UTR
AAGTCGTATCGAAGAATATA+TGG 0.350780 8_1:-52611261 Msa1200220:three_prime_UTR
TGGTCAGCTGGTTGCGTACT+TGG 0.374738 8_1:-52611763 Msa1200220:CDS
TTTGTTGTATCCTAACGAAT+AGG 0.383838 8_1:-52611134 Msa1200220:three_prime_UTR
ATTCAATCATAGCTCAGTTA+TGG 0.423401 8_1:+52611205 None:intergenic
AGAGCTCCTGATCCTATATT+CGG 0.439624 8_1:-52611817 Msa1200220:CDS
TACTCAGTTGCACCGAATAT+AGG 0.446675 8_1:+52611805 None:intergenic
CCTTGATAATTTCCACAAGT+TGG 0.452229 8_1:+52611605 None:intergenic
GGTATAATTATATATAAACT+TGG 0.457115 8_1:-52611374 Msa1200220:exon
AAATCTTTGTAGGTTAATCA+AGG 0.473313 8_1:-52611350 Msa1200220:three_prime_UTR
GTCATTGACATCTGGTCAGC+TGG 0.482850 8_1:-52611775 Msa1200220:CDS
TGGTGAACGTTTGCTTGGCC+AGG 0.486349 8_1:-52611743 Msa1200220:intron
CCACTGTTTCCTGGTGAGAG+TGG 0.506242 8_1:-52611634 Msa1200220:CDS
TGACTACACTCCTATTCGTT+AGG 0.509378 8_1:+52611124 None:intergenic
CCAACTTGTGGAAATTATCA+AGG 0.511188 8_1:-52611605 Msa1200220:intron
GTTGCACCGAATATAGGATC+AGG 0.522330 8_1:+52611811 None:intergenic
ACACCACAGTCATTGACATC+TGG 0.524089 8_1:-52611783 Msa1200220:CDS
GCATGAATCCTAATTATACT+AGG 0.531370 8_1:-52611395 Msa1200220:CDS
GTACTTGGTGAACGTTTGCT+TGG 0.531776 8_1:-52611748 Msa1200220:CDS
GTATAATTATATATAAACTT+GGG 0.575715 8_1:-52611373 Msa1200220:exon
TGGTCTACTCCACTCTCACC+AGG 0.583110 8_1:+52611625 None:intergenic
CCACTCTCACCAGGAAACAG+TGG 0.653830 8_1:+52611634 None:intergenic
GAGTGGAGTAGACCAACTTG+TGG 0.666033 8_1:-52611617 Msa1200220:CDS
TGACCAGATGTCAATGACTG+TGG 0.757242 8_1:+52611780 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTATAATTATATATAAACTT+GGG - chr8_1:52612119-52612138 Msa1200220:intron 10.0%
!! GTATAATTATATATAAACTT+GGG - chr8_1:52612119-52612138 Msa1200220:intron 10.0%
!!! TATTTTTAGTTCAGTTAATT+CGG - chr8_1:52612016-52612035 Msa1200220:intron 15.0%
!! TAATTATACCTAGTATAATT+AGG + chr8_1:52612108-52612127 None:intergenic 15.0%
!! GGTATAATTATATATAAACT+TGG - chr8_1:52612118-52612137 Msa1200220:intron 15.0%
!!! TATTTTTAGTTCAGTTAATT+CGG - chr8_1:52612016-52612035 Msa1200220:intron 15.0%
!! TAATTATACCTAGTATAATT+AGG + chr8_1:52612108-52612127 None:intergenic 15.0%
!! GGTATAATTATATATAAACT+TGG - chr8_1:52612118-52612137 Msa1200220:intron 15.0%
!!! ATGTTTTAGCATTTACAAAT+TGG - chr8_1:52611328-52611347 Msa1200220:three_prime_UTR 20.0%
!! TGAAATGATCTAATAAAACA+TGG + chr8_1:52611412-52611431 None:intergenic 20.0%
!!! TTTTGATGTTGTATAAAAAC+AGG - chr8_1:52611473-52611492 Msa1200220:intron 20.0%
!! TATAAAGACTAAATGCTATA+TGG - chr8_1:52611599-52611618 Msa1200220:intron 20.0%
!! AAACGAAACAAAAATATGAA+AGG + chr8_1:52611991-52612010 None:intergenic 20.0%
!!! ATGTTTTAGCATTTACAAAT+TGG - chr8_1:52611328-52611347 Msa1200220:three_prime_UTR 20.0%
!! TGAAATGATCTAATAAAACA+TGG + chr8_1:52611412-52611431 None:intergenic 20.0%
!!! TTTTGATGTTGTATAAAAAC+AGG - chr8_1:52611473-52611492 Msa1200220:intron 20.0%
!! TATAAAGACTAAATGCTATA+TGG - chr8_1:52611599-52611618 Msa1200220:intron 20.0%
!! AAACGAAACAAAAATATGAA+AGG + chr8_1:52611991-52612010 None:intergenic 20.0%
! TTTGCACTTTATTCTGTAAA+TGG - chr8_1:52611156-52611175 Msa1200220:three_prime_UTR 25.0%
! TTGCACTTTATTCTGTAAAT+GGG - chr8_1:52611157-52611176 Msa1200220:three_prime_UTR 25.0%
!!! AATATAGCTTTTCTGAAGTA+TGG + chr8_1:52611192-52611211 None:intergenic 25.0%
!! AGAATGGAGATAGTAATTTT+TGG - chr8_1:52611442-52611461 Msa1200220:intron 25.0%
!!! TAAATGCTATATGGTTTTAC+AGG - chr8_1:52611608-52611627 Msa1200220:CDS 25.0%
! GAACAAATGTAAGATATGTT+TGG + chr8_1:52611645-52611664 None:intergenic 25.0%
! ACATATCTTACATTTGTTCT+AGG - chr8_1:52611646-52611665 Msa1200220:intron 25.0%
! AAATCTTTGTAGGTTAATCA+AGG - chr8_1:52612142-52612161 Msa1200220:intron 25.0%
! TTTGCACTTTATTCTGTAAA+TGG - chr8_1:52611156-52611175 Msa1200220:three_prime_UTR 25.0%
! TTGCACTTTATTCTGTAAAT+GGG - chr8_1:52611157-52611176 Msa1200220:three_prime_UTR 25.0%
!!! AATATAGCTTTTCTGAAGTA+TGG + chr8_1:52611192-52611211 None:intergenic 25.0%
!! AGAATGGAGATAGTAATTTT+TGG - chr8_1:52611442-52611461 Msa1200220:intron 25.0%
!!! TAAATGCTATATGGTTTTAC+AGG - chr8_1:52611608-52611627 Msa1200220:CDS 25.0%
! GAACAAATGTAAGATATGTT+TGG + chr8_1:52611645-52611664 None:intergenic 25.0%
! ACATATCTTACATTTGTTCT+AGG - chr8_1:52611646-52611665 Msa1200220:intron 25.0%
! AAATCTTTGTAGGTTAATCA+AGG - chr8_1:52612142-52612161 Msa1200220:intron 25.0%
AAATTGTGCATGTCACAAAT+CGG + chr8_1:52611226-52611245 None:intergenic 30.0%
TGTTATGATTTCTACCAGAA+AGG - chr8_1:52611279-52611298 Msa1200220:three_prime_UTR 30.0%
! CATTTCTCAATTTTCCTTTC+TGG + chr8_1:52611296-52611315 None:intergenic 30.0%
ATTTCACTTTCCTAACAGAA+TGG - chr8_1:52611426-52611445 Msa1200220:CDS 30.0%
ATTACTATCTCCATTCTGTT+AGG + chr8_1:52611439-52611458 None:intergenic 30.0%
AAACTAACGAAAGGATTTCA+AGG + chr8_1:52611559-52611578 None:intergenic 30.0%
GTTATTGCAAAACTAACGAA+AGG + chr8_1:52611568-52611587 None:intergenic 30.0%
GCATGAATCCTAATTATACT+AGG - chr8_1:52612097-52612116 Msa1200220:intron 30.0%
TAAACTTGGGAAATCTTTGT+AGG - chr8_1:52612132-52612151 Msa1200220:intron 30.0%
AAGTCGTATCGAAGAATATA+TGG - chr8_1:52612231-52612250 Msa1200220:intron 30.0%
ATTCAATCATAGCTCAGTTA+TGG + chr8_1:52612290-52612309 None:intergenic 30.0%
! ACAAAAATGGCACTCTAAAA+CGG + chr8_1:52612343-52612362 None:intergenic 30.0%
TCGTTAGGATACAACAAAAA+TGG + chr8_1:52612356-52612375 None:intergenic 30.0%
! TTTGTTGTATCCTAACGAAT+AGG - chr8_1:52612358-52612377 Msa1200220:intron 30.0%
AAATTGTGCATGTCACAAAT+CGG + chr8_1:52611226-52611245 None:intergenic 30.0%
TGTTATGATTTCTACCAGAA+AGG - chr8_1:52611279-52611298 Msa1200220:three_prime_UTR 30.0%
! CATTTCTCAATTTTCCTTTC+TGG + chr8_1:52611296-52611315 None:intergenic 30.0%
ATTTCACTTTCCTAACAGAA+TGG - chr8_1:52611426-52611445 Msa1200220:CDS 30.0%
ATTACTATCTCCATTCTGTT+AGG + chr8_1:52611439-52611458 None:intergenic 30.0%
AAACTAACGAAAGGATTTCA+AGG + chr8_1:52611559-52611578 None:intergenic 30.0%
GTTATTGCAAAACTAACGAA+AGG + chr8_1:52611568-52611587 None:intergenic 30.0%
GCATGAATCCTAATTATACT+AGG - chr8_1:52612097-52612116 Msa1200220:intron 30.0%
TAAACTTGGGAAATCTTTGT+AGG - chr8_1:52612132-52612151 Msa1200220:intron 30.0%
AAGTCGTATCGAAGAATATA+TGG - chr8_1:52612231-52612250 Msa1200220:intron 30.0%
ATTCAATCATAGCTCAGTTA+TGG + chr8_1:52612290-52612309 None:intergenic 30.0%
! ACAAAAATGGCACTCTAAAA+CGG + chr8_1:52612343-52612362 None:intergenic 30.0%
TCGTTAGGATACAACAAAAA+TGG + chr8_1:52612356-52612375 None:intergenic 30.0%
! TTTGTTGTATCCTAACGAAT+AGG - chr8_1:52612358-52612377 Msa1200220:intron 30.0%
GTGACATGCACAATTTGAAT+TGG - chr8_1:52611230-52611249 Msa1200220:three_prime_UTR 35.0%
!! GTGCATTCGTTGATTTATGT+GGG - chr8_1:52611353-52611372 Msa1200220:three_prime_UTR 35.0%
!! TGCATTCGTTGATTTATGTG+GGG - chr8_1:52611354-52611373 Msa1200220:three_prime_UTR 35.0%
TAAAGTCGCATATCTTCAGT+TGG + chr8_1:52611515-52611534 None:intergenic 35.0%
AAGATATGCGACTTTAGTCT+TGG - chr8_1:52611519-52611538 Msa1200220:intron 35.0%
! CCTTGATAATTTCCACAAGT+TGG + chr8_1:52611890-52611909 None:intergenic 35.0%
CCAACTTGTGGAAATTATCA+AGG - chr8_1:52611887-52611906 Msa1200220:intron 35.0%
ATATGTTCAAGCTAGTAGCA+AGG + chr8_1:52611955-52611974 None:intergenic 35.0%
GTTAATTCGGAAGTTTCATG+TGG - chr8_1:52612029-52612048 Msa1200220:intron 35.0%
GTGACATGCACAATTTGAAT+TGG - chr8_1:52611230-52611249 Msa1200220:three_prime_UTR 35.0%
!! GTGCATTCGTTGATTTATGT+GGG - chr8_1:52611353-52611372 Msa1200220:three_prime_UTR 35.0%
!! TGCATTCGTTGATTTATGTG+GGG - chr8_1:52611354-52611373 Msa1200220:three_prime_UTR 35.0%
TAAAGTCGCATATCTTCAGT+TGG + chr8_1:52611515-52611534 None:intergenic 35.0%
AAGATATGCGACTTTAGTCT+TGG - chr8_1:52611519-52611538 Msa1200220:intron 35.0%
! CCTTGATAATTTCCACAAGT+TGG + chr8_1:52611890-52611909 None:intergenic 35.0%
CCAACTTGTGGAAATTATCA+AGG - chr8_1:52611887-52611906 Msa1200220:intron 35.0%
ATATGTTCAAGCTAGTAGCA+AGG + chr8_1:52611955-52611974 None:intergenic 35.0%
GTTAATTCGGAAGTTTCATG+TGG - chr8_1:52612029-52612048 Msa1200220:intron 35.0%
!!! CTTTTCTGAAGTATGGATGC+AGG + chr8_1:52611185-52611204 None:intergenic 40.0%
!! CGTGCATTCGTTGATTTATG+TGG - chr8_1:52611352-52611371 Msa1200220:three_prime_UTR 40.0%
AGAGCTCCTGATCCTATATT+CGG - chr8_1:52611675-52611694 Msa1200220:intron 40.0%
TACTCAGTTGCACCGAATAT+AGG + chr8_1:52611690-52611709 None:intergenic 40.0%
ACACAATGAAGCTAGTTACC+TGG + chr8_1:52611770-52611789 None:intergenic 40.0%
CTAGCTTCATTGTGTATGCT+TGG - chr8_1:52611775-52611794 Msa1200220:CDS 40.0%
!!! AGGTTTTAGGTACTCCAACA+AGG - chr8_1:52612061-52612080 Msa1200220:intron 40.0%
!!! GGTTTTAGGTACTCCAACAA+GGG - chr8_1:52612062-52612081 Msa1200220:intron 40.0%
CACTTGATTTCTTCCCTTGT+TGG + chr8_1:52612078-52612097 None:intergenic 40.0%
TGACTACACTCCTATTCGTT+AGG + chr8_1:52612371-52612390 None:intergenic 40.0%
!!! CTTTTCTGAAGTATGGATGC+AGG + chr8_1:52611185-52611204 None:intergenic 40.0%
!! CGTGCATTCGTTGATTTATG+TGG - chr8_1:52611352-52611371 Msa1200220:three_prime_UTR 40.0%
AGAGCTCCTGATCCTATATT+CGG - chr8_1:52611675-52611694 Msa1200220:intron 40.0%
TACTCAGTTGCACCGAATAT+AGG + chr8_1:52611690-52611709 None:intergenic 40.0%
ACACAATGAAGCTAGTTACC+TGG + chr8_1:52611770-52611789 None:intergenic 40.0%
CTAGCTTCATTGTGTATGCT+TGG - chr8_1:52611775-52611794 Msa1200220:CDS 40.0%
!!! AGGTTTTAGGTACTCCAACA+AGG - chr8_1:52612061-52612080 Msa1200220:intron 40.0%
!!! GGTTTTAGGTACTCCAACAA+GGG - chr8_1:52612062-52612081 Msa1200220:intron 40.0%
CACTTGATTTCTTCCCTTGT+TGG + chr8_1:52612078-52612097 None:intergenic 40.0%
TGACTACACTCCTATTCGTT+AGG + chr8_1:52612371-52612390 None:intergenic 40.0%
GTCGCATATCTTCAGTTGGT+AGG + chr8_1:52611511-52611530 None:intergenic 45.0%
GTTGCACCGAATATAGGATC+AGG + chr8_1:52611684-52611703 None:intergenic 45.0%
ACACCACAGTCATTGACATC+TGG - chr8_1:52611709-52611728 Msa1200220:intron 45.0%
TGACCAGATGTCAATGACTG+TGG + chr8_1:52611715-52611734 None:intergenic 45.0%
! GTACTTGGTGAACGTTTGCT+TGG - chr8_1:52611744-52611763 Msa1200220:CDS 45.0%
TCTTATCAGCCACTGTTTCC+TGG - chr8_1:52611849-52611868 Msa1200220:intron 45.0%
GTTTCATGTGGTTCACTTGC+AGG - chr8_1:52612041-52612060 Msa1200220:intron 45.0%
! GTGGTTCACTTGCAGGTTTT+AGG - chr8_1:52612048-52612067 Msa1200220:intron 45.0%
GTCGCATATCTTCAGTTGGT+AGG + chr8_1:52611511-52611530 None:intergenic 45.0%
GTTGCACCGAATATAGGATC+AGG + chr8_1:52611684-52611703 None:intergenic 45.0%
ACACCACAGTCATTGACATC+TGG - chr8_1:52611709-52611728 Msa1200220:intron 45.0%
TGACCAGATGTCAATGACTG+TGG + chr8_1:52611715-52611734 None:intergenic 45.0%
! GTACTTGGTGAACGTTTGCT+TGG - chr8_1:52611744-52611763 Msa1200220:CDS 45.0%
TCTTATCAGCCACTGTTTCC+TGG - chr8_1:52611849-52611868 Msa1200220:intron 45.0%
GTTTCATGTGGTTCACTTGC+AGG - chr8_1:52612041-52612060 Msa1200220:intron 45.0%
! GTGGTTCACTTGCAGGTTTT+AGG - chr8_1:52612048-52612067 Msa1200220:intron 45.0%
GTCATTGACATCTGGTCAGC+TGG - chr8_1:52611717-52611736 Msa1200220:intron 50.0%
GAGTGGAGTAGACCAACTTG+TGG - chr8_1:52611875-52611894 Msa1200220:intron 50.0%
GTCATTGACATCTGGTCAGC+TGG - chr8_1:52611717-52611736 Msa1200220:intron 50.0%
GAGTGGAGTAGACCAACTTG+TGG - chr8_1:52611875-52611894 Msa1200220:intron 50.0%
TGGTCAGCTGGTTGCGTACT+TGG - chr8_1:52611729-52611748 Msa1200220:intron 55.0%
TGGTGAACGTTTGCTTGGCC+AGG - chr8_1:52611749-52611768 Msa1200220:CDS 55.0%
CCACTCTCACCAGGAAACAG+TGG + chr8_1:52611861-52611880 None:intergenic 55.0%
CCACTGTTTCCTGGTGAGAG+TGG - chr8_1:52611858-52611877 Msa1200220:intron 55.0%
TGGTCTACTCCACTCTCACC+AGG + chr8_1:52611870-52611889 None:intergenic 55.0%
TGGTCAGCTGGTTGCGTACT+TGG - chr8_1:52611729-52611748 Msa1200220:intron 55.0%
TGGTGAACGTTTGCTTGGCC+AGG - chr8_1:52611749-52611768 Msa1200220:CDS 55.0%
CCACTCTCACCAGGAAACAG+TGG + chr8_1:52611861-52611880 None:intergenic 55.0%
CCACTGTTTCCTGGTGAGAG+TGG - chr8_1:52611858-52611877 Msa1200220:intron 55.0%
TGGTCTACTCCACTCTCACC+AGG + chr8_1:52611870-52611889 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 52611120 52612394 52611120 ID=Msa1200220;Name=Msa1200220
chr8_1 mRNA 52611120 52612394 52611120 ID=Msa1200220-mRNA-1;Parent=Msa1200220;Name=Msa1200220-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0.66|0.5|0.75|0.66|0.75|4|260|76
chr8_1 exon 52611120 52611451 52611120 ID=Msa1200220-mRNA-1:exon:16845;Parent=Msa1200220-mRNA-1
chr8_1 exon 52611606 52611656 52611606 ID=Msa1200220-mRNA-1:exon:16844;Parent=Msa1200220-mRNA-1
chr8_1 exon 52611744 52611846 52611744 ID=Msa1200220-mRNA-1:exon:16843;Parent=Msa1200220-mRNA-1
chr8_1 exon 52612390 52612394 52612390 ID=Msa1200220-mRNA-1:exon:16842;Parent=Msa1200220-mRNA-1
chr8_1 CDS 52612390 52612394 52612390 ID=Msa1200220-mRNA-1:cds;Parent=Msa1200220-mRNA-1
chr8_1 CDS 52611744 52611846 52611744 ID=Msa1200220-mRNA-1:cds;Parent=Msa1200220-mRNA-1
chr8_1 CDS 52611606 52611656 52611606 ID=Msa1200220-mRNA-1:cds;Parent=Msa1200220-mRNA-1
chr8_1 CDS 52611380 52611451 52611380 ID=Msa1200220-mRNA-1:cds;Parent=Msa1200220-mRNA-1
chr8_1 three_prime_UTR 52611120 52611379 52611120 ID=Msa1200220-mRNA-1:three_prime_utr;Parent=Msa1200220-mRNA-1
Gene Sequence

>Msa1200220

ATGAAGTACTATAGAGCTCCTGATCCTATATTCGGTGCAACTGAGTACACCACAGTCATTGACATCTGGTCAGCTGGTTGCGTACTTGGTGAACGTTTGCTTGGCCAGCCACTGTTTCCTGGTGAGAGTGGAGTAGACCAACTTGTGGAAATTATCAAGGTTTTAGGTACTCCAACAAGGGAAGAAATCAAGTGCATGAATCCTAATTATACTAGGTATAATTATATATAA
Protein sequence

>Msa1200220

MKYYRAPDPIFGATEYTTVIDIWSAGCVLGERLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTRYNYI*