Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1200770 | XP_003629108.2 | 98.876 | 445 | 2 | 1 | 1 | 445 | 1 | 442 | 0.0 | 910 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1200770 | sp|Q45FA5|SRPK_PHYPO | 44.608 | 408 | 209 | 6 | 10 | 415 | 29 | 421 | 1.89e-112 | 340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1200770 | MtrunA17_Chr8g0370321 | 98.876 | 445 | 2 | 1 | 1 | 445 | 1 | 442 | 0.0 | 910 |
| Msa1200770 | MtrunA17_Chr5g0407121 | 82.287 | 446 | 78 | 1 | 1 | 445 | 1 | 446 | 0.0 | 746 |
| Msa1200770 | MtrunA17_Chr1g0179611 | 48.456 | 518 | 189 | 6 | 2 | 441 | 8 | 525 | 1.94e-173 | 497 |
| Msa1200770 | MtrunA17_Chr4g0027671 | 48.155 | 515 | 181 | 7 | 12 | 441 | 13 | 526 | 3.91e-167 | 481 |
| Msa1200770 | MtrunA17_Chr2g0320631 | 46.014 | 276 | 126 | 3 | 183 | 441 | 253 | 522 | 1.88e-80 | 258 |
| Msa1200770 | MtrunA17_Chr2g0320631 | 56.019 | 216 | 82 | 1 | 6 | 208 | 8 | 223 | 3.24e-79 | 255 |
| Msa1200770 | MtrunA17_Chr3g0139371 | 29.665 | 418 | 217 | 14 | 5 | 413 | 49 | 398 | 5.79e-40 | 147 |
| Msa1200770 | MtrunA17_Chr3g0116701 | 29.369 | 412 | 204 | 13 | 21 | 414 | 78 | 420 | 2.33e-39 | 146 |
| Msa1200770 | MtrunA17_Chr4g0058241 | 29.440 | 411 | 209 | 13 | 21 | 416 | 82 | 426 | 9.05e-38 | 142 |
| Msa1200770 | MtrunA17_Chr3g0123491 | 28.530 | 347 | 185 | 9 | 21 | 367 | 77 | 360 | 3.43e-33 | 129 |
| Msa1200770 | MtrunA17_Chr6g0480541 | 32.738 | 168 | 99 | 5 | 252 | 413 | 1041 | 1200 | 6.04e-20 | 93.2 |
| Msa1200770 | MtrunA17_Chr6g0480541 | 31.544 | 149 | 93 | 3 | 35 | 179 | 895 | 1038 | 1.42e-11 | 67.0 |
| Msa1200770 | MtrunA17_Chr5g0437131 | 31.098 | 164 | 101 | 4 | 254 | 413 | 550 | 705 | 2.66e-18 | 87.8 |
| Msa1200770 | MtrunA17_Chr5g0437131 | 32.258 | 155 | 96 | 3 | 29 | 179 | 394 | 543 | 1.79e-12 | 69.3 |
| Msa1200770 | MtrunA17_Chr8g0369241 | 33.103 | 145 | 91 | 3 | 37 | 180 | 138 | 277 | 7.91e-18 | 86.3 |
| Msa1200770 | MtrunA17_Chr8g0369241 | 39.815 | 108 | 58 | 3 | 254 | 360 | 285 | 386 | 9.64e-14 | 73.6 |
| Msa1200770 | MtrunA17_Chr1g0210061 | 32.609 | 184 | 91 | 8 | 254 | 416 | 757 | 928 | 1.34e-13 | 73.2 |
| Msa1200770 | MtrunA17_Chr1g0210061 | 30.233 | 172 | 101 | 5 | 11 | 177 | 592 | 749 | 2.30e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1200770 | AT4G35500.1 | 73.034 | 445 | 109 | 3 | 1 | 442 | 1 | 437 | 0.0 | 666 |
| Msa1200770 | AT2G17530.1 | 73.198 | 444 | 109 | 3 | 1 | 442 | 1 | 436 | 0.0 | 653 |
| Msa1200770 | AT2G17530.3 | 73.198 | 444 | 109 | 3 | 1 | 442 | 1 | 436 | 0.0 | 653 |
| Msa1200770 | AT4G35500.2 | 70.852 | 446 | 118 | 4 | 1 | 442 | 1 | 438 | 0.0 | 643 |
| Msa1200770 | AT2G17530.2 | 78.363 | 342 | 72 | 2 | 1 | 340 | 1 | 342 | 0.0 | 525 |
| Msa1200770 | AT3G53030.1 | 50.420 | 476 | 178 | 6 | 12 | 431 | 16 | 489 | 8.41e-168 | 482 |
| Msa1200770 | AT5G22840.1 | 49.476 | 477 | 184 | 4 | 4 | 428 | 11 | 482 | 1.18e-164 | 474 |
| Msa1200770 | AT3G44850.1 | 47.276 | 514 | 191 | 6 | 12 | 445 | 19 | 532 | 1.76e-162 | 469 |
| Msa1200770 | AT3G53570.1 | 29.676 | 401 | 218 | 10 | 21 | 413 | 99 | 443 | 3.48e-39 | 147 |
| Msa1200770 | AT3G53570.4 | 29.676 | 401 | 218 | 10 | 21 | 413 | 99 | 443 | 3.48e-39 | 147 |
| Msa1200770 | AT3G53570.2 | 29.676 | 401 | 218 | 10 | 21 | 413 | 99 | 443 | 3.48e-39 | 147 |
| Msa1200770 | AT4G32660.3 | 28.288 | 403 | 218 | 10 | 21 | 413 | 47 | 388 | 4.87e-39 | 145 |
| Msa1200770 | AT3G53570.3 | 29.676 | 401 | 218 | 10 | 21 | 413 | 85 | 429 | 5.41e-39 | 146 |
| Msa1200770 | AT3G53570.5 | 29.676 | 401 | 218 | 10 | 21 | 413 | 85 | 429 | 5.41e-39 | 146 |
| Msa1200770 | AT4G32660.1 | 28.288 | 403 | 218 | 10 | 21 | 413 | 55 | 396 | 6.96e-39 | 145 |
| Msa1200770 | AT4G24740.7 | 29.710 | 414 | 204 | 14 | 21 | 416 | 44 | 388 | 1.52e-38 | 144 |
| Msa1200770 | AT4G24740.1 | 29.227 | 414 | 206 | 13 | 21 | 416 | 82 | 426 | 4.85e-38 | 143 |
| Msa1200770 | AT4G24740.6 | 29.412 | 391 | 190 | 13 | 44 | 416 | 1 | 323 | 5.85e-36 | 135 |
| Msa1200770 | AT4G24740.9 | 29.412 | 391 | 190 | 13 | 44 | 416 | 1 | 323 | 5.85e-36 | 135 |
| Msa1200770 | AT4G24740.2 | 29.412 | 391 | 190 | 13 | 44 | 416 | 1 | 323 | 5.85e-36 | 135 |
| Msa1200770 | AT4G32660.2 | 28.657 | 335 | 180 | 8 | 21 | 355 | 55 | 330 | 4.05e-35 | 134 |
| Msa1200770 | AT4G24740.3 | 30.625 | 320 | 164 | 8 | 21 | 340 | 82 | 343 | 5.72e-34 | 130 |
| Msa1200770 | AT4G24740.5 | 31.313 | 297 | 147 | 8 | 44 | 340 | 1 | 240 | 7.38e-32 | 122 |
| Msa1200770 | AT4G32660.4 | 28.280 | 343 | 174 | 11 | 82 | 413 | 3 | 284 | 5.66e-30 | 118 |
| Msa1200770 | AT4G24740.4 | 30.420 | 286 | 147 | 7 | 21 | 306 | 82 | 315 | 6.73e-28 | 113 |
| Msa1200770 | AT1G73460.2 | 34.524 | 168 | 96 | 5 | 252 | 413 | 1001 | 1160 | 1.21e-21 | 98.6 |
| Msa1200770 | AT1G73460.1 | 34.524 | 168 | 96 | 5 | 252 | 413 | 1001 | 1160 | 1.21e-21 | 98.6 |
| Msa1200770 | AT1G73450.1 | 34.524 | 168 | 96 | 5 | 252 | 413 | 984 | 1143 | 1.36e-21 | 98.6 |
| Msa1200770 | AT2G40120.1 | 24.561 | 399 | 210 | 12 | 29 | 418 | 252 | 568 | 9.05e-21 | 95.5 |
| Msa1200770 | AT4G24740.10 | 29.630 | 270 | 110 | 10 | 165 | 416 | 13 | 220 | 3.02e-20 | 89.4 |
| Msa1200770 | AT4G24740.8 | 29.630 | 270 | 110 | 10 | 165 | 416 | 13 | 220 | 3.02e-20 | 89.4 |
| Msa1200770 | AT5G35980.2 | 31.111 | 180 | 110 | 6 | 12 | 185 | 94 | 265 | 6.97e-19 | 90.1 |
| Msa1200770 | AT5G35980.2 | 30.918 | 207 | 87 | 7 | 254 | 413 | 267 | 464 | 1.40e-14 | 76.6 |
| Msa1200770 | AT5G35980.1 | 32.667 | 150 | 95 | 3 | 37 | 185 | 121 | 265 | 1.06e-18 | 89.7 |
| Msa1200770 | AT5G35980.1 | 43.878 | 98 | 49 | 2 | 254 | 351 | 267 | 358 | 1.36e-14 | 76.6 |
| Msa1200770 | AT5G35980.3 | 31.111 | 180 | 110 | 6 | 12 | 185 | 59 | 230 | 1.15e-18 | 89.4 |
| Msa1200770 | AT5G35980.3 | 43.878 | 98 | 49 | 2 | 254 | 351 | 232 | 323 | 1.43e-14 | 76.6 |
| Msa1200770 | AT3G17750.1 | 32.143 | 168 | 100 | 5 | 252 | 413 | 970 | 1129 | 1.41e-17 | 86.3 |
| Msa1200770 | AT3G53640.1 | 31.148 | 183 | 96 | 6 | 254 | 416 | 470 | 642 | 2.16e-14 | 75.9 |
| Msa1200770 | AT1G13350.1 | 30.435 | 184 | 96 | 7 | 254 | 416 | 589 | 761 | 2.93e-13 | 72.4 |
| Msa1200770 | AT1G13350.1 | 30.814 | 172 | 100 | 5 | 11 | 177 | 424 | 581 | 6.95e-12 | 68.2 |
| Msa1200770 | AT1G13350.2 | 30.435 | 184 | 96 | 7 | 254 | 416 | 616 | 788 | 3.37e-13 | 72.4 |
| Msa1200770 | AT1G13350.2 | 30.814 | 172 | 100 | 5 | 11 | 177 | 451 | 608 | 7.58e-12 | 68.2 |
| Msa1200770 | AT1G13350.3 | 30.435 | 184 | 96 | 7 | 254 | 416 | 662 | 834 | 3.65e-13 | 72.4 |
| Msa1200770 | AT1G13350.3 | 30.814 | 172 | 100 | 5 | 11 | 177 | 497 | 654 | 8.94e-12 | 67.8 |
| Msa1200770 | AT3G25840.2 | 31.694 | 183 | 94 | 7 | 254 | 416 | 502 | 673 | 7.01e-13 | 71.2 |
| Msa1200770 | AT3G25840.1 | 31.720 | 186 | 90 | 9 | 254 | 416 | 764 | 935 | 8.67e-13 | 71.2 |
Find 143 sgRNAs with CRISPR-Local
Find 277 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATATTTCTATCAGAATT+TGG | 0.182704 | 8_1:-53670503 | None:intergenic |
| AATGTAAATCTTATTGAATT+TGG | 0.189427 | 8_1:-53672208 | None:intergenic |
| ATGTCTTGTTCTTCTTCATC+TGG | 0.217080 | 8_1:+53668891 | Msa1200770:CDS |
| GGATTCGGAGGCTAAAATTT+TGG | 0.237408 | 8_1:+53671858 | Msa1200770:CDS |
| AAATTGTGAGATTATTATTA+AGG | 0.246442 | 8_1:-53668773 | None:intergenic |
| TTCTGGACAAAGAGCTTCTA+TGG | 0.246761 | 8_1:+53670463 | Msa1200770:CDS |
| TTCTGCAGTTGGTCGCTTCT+CGG | 0.258297 | 8_1:-53671975 | None:intergenic |
| AGGGCGGTAGCTAAAATTTC+TGG | 0.265940 | 8_1:+53670446 | Msa1200770:CDS |
| CCATGAGCCAAGGGTGTTGC+AGG | 0.266108 | 8_1:-53672003 | None:intergenic |
| AGATGCAAAGTGGTTGATTT+TGG | 0.275568 | 8_1:+53670539 | Msa1200770:CDS |
| GTACATAGCTCAGAGGAAAT+TGG | 0.318879 | 8_1:+53669001 | Msa1200770:CDS |
| CAGCATGGTATCCACCTTTC+CGG | 0.321046 | 8_1:-53668947 | None:intergenic |
| AAAACTTGAAAATGTTCTTC+TGG | 0.321760 | 8_1:+53670295 | Msa1200770:CDS |
| CCCTCAGGCCTCTCTAAAAT+CGG | 0.323007 | 8_1:-53670365 | None:intergenic |
| GCTAAAACCTTGTCCGACTT+TGG | 0.352838 | 8_1:-53670723 | None:intergenic |
| GTCTGAATTTCTTCCGCAAA+TGG | 0.355796 | 8_1:-53670584 | None:intergenic |
| AAATTTCTGTCAAATATCTA+TGG | 0.364734 | 8_1:-53672285 | None:intergenic |
| CTAAAACCTTGTCCGACTTT+GGG | 0.366642 | 8_1:-53670722 | None:intergenic |
| TTCCAAGGAGTTCCATCATC+AGG | 0.368239 | 8_1:-53671568 | None:intergenic |
| GGGGAGACTCCCGATCTAAC+AGG | 0.374226 | 8_1:-53670344 | None:intergenic |
| AAGTGCAGCGCAGTTTGTTC+AGG | 0.376553 | 8_1:+53669995 | Msa1200770:CDS |
| TCAATCAATAGTTTGTTAAG+AGG | 0.383534 | 8_1:-53671881 | None:intergenic |
| AGCTCAGAGGAAATTGGGTT+GGG | 0.387320 | 8_1:+53669007 | Msa1200770:CDS |
| ATGTTGAAGAGGGGACTTAG+AGG | 0.388043 | 8_1:-53672147 | None:intergenic |
| CGGTGGGAACACTACCTTCC+GGG | 0.395671 | 8_1:-53671597 | None:intergenic |
| TGCATGGTACTCGAATTTCT+TGG | 0.404519 | 8_1:+53670137 | Msa1200770:CDS |
| GATTGTTGTTGTTCTATTTG+TGG | 0.405910 | 8_1:-53668742 | None:intergenic |
| ATTGCTTTCGAGCTTGCCAC+TGG | 0.409835 | 8_1:+53670683 | Msa1200770:CDS |
| TGTCTTGTTCTTCTTCATCT+GGG | 0.422803 | 8_1:+53668892 | Msa1200770:CDS |
| GCTTAAAGTGGTCGATCAAT+TGG | 0.423698 | 8_1:-53670088 | None:intergenic |
| ATGCATTGGTGCTGGCCGTT+AGG | 0.428045 | 8_1:-53670119 | None:intergenic |
| GATTCATTTCTCATTTCATC+AGG | 0.430586 | 8_1:-53672040 | None:intergenic |
| TACATAGCTCAGAGGAAATT+GGG | 0.433819 | 8_1:+53669002 | Msa1200770:CDS |
| TCTGCAGTTGGTCGCTTCTC+GGG | 0.434856 | 8_1:-53671974 | None:intergenic |
| CTCTTAGCTTTGAGACCTCA+TGG | 0.438650 | 8_1:-53672355 | None:intergenic |
| ACACCCTTGGCTCATGGAAA+AGG | 0.460564 | 8_1:+53672009 | Msa1200770:CDS |
| CCTCAGGCCTCTCTAAAATC+GGG | 0.463410 | 8_1:-53670364 | None:intergenic |
| AAGGTGGATACCATGCTGTC+CGG | 0.465806 | 8_1:+53668952 | Msa1200770:CDS |
| GTCTTCCGATGAATAAAGTC+AGG | 0.469765 | 8_1:+53670201 | Msa1200770:CDS |
| AATTCTGATAGAAATATTGA+TGG | 0.472298 | 8_1:+53670506 | Msa1200770:CDS |
| AAAAGTTGAAAAGGAGAGCA+AGG | 0.476403 | 8_1:+53670423 | Msa1200770:CDS |
| AGAGCTTCTATGGGAGGAAT+GGG | 0.477776 | 8_1:+53670473 | Msa1200770:CDS |
| TGGTTTGGATTACTTGCATA+GGG | 0.485784 | 8_1:+53670247 | Msa1200770:CDS |
| CCTGCAACACCCTTGGCTCA+TGG | 0.486242 | 8_1:+53672003 | Msa1200770:CDS |
| AAGAGCTTCTATGGGAGGAA+TGG | 0.488237 | 8_1:+53670472 | Msa1200770:CDS |
| ACGGGGATCTCAAAAGGATT+CGG | 0.490967 | 8_1:+53671843 | Msa1200770:CDS |
| AACTCCTTGGAAAGATGCCC+CGG | 0.491317 | 8_1:+53671579 | Msa1200770:CDS |
| CCAGCCTGCAGTATAACTTC+AGG | 0.494640 | 8_1:-53670623 | None:intergenic |
| ATTCCTTCTCCGTCGATATG+TGG | 0.494693 | 8_1:+53670648 | Msa1200770:CDS |
| ATGTTACAGGTTGCTACTGC+AGG | 0.497187 | 8_1:+53671791 | Msa1200770:intron |
| ACAGACACGGGGATCTCAAA+AGG | 0.497743 | 8_1:+53671837 | Msa1200770:CDS |
| GGCGAAAGACCCTGTTAGAT+CGG | 0.498073 | 8_1:+53670334 | Msa1200770:CDS |
| AACAGTGCCTGCAACACCCT+TGG | 0.502041 | 8_1:+53671996 | Msa1200770:CDS |
| TCTGGTTTCTACTATCGATC+CGG | 0.502093 | 8_1:+53670313 | Msa1200770:CDS |
| AATAAGCAACCTTAAAATCA+AGG | 0.503806 | 8_1:+53672087 | Msa1200770:CDS |
| TGCAGGCACTGTTCTGCAGT+TGG | 0.504517 | 8_1:-53671986 | None:intergenic |
| AGGCCTGAGGGAAACATAAA+CGG | 0.506847 | 8_1:+53670377 | Msa1200770:CDS |
| GCGCCGTTTATGTTTCCCTC+AGG | 0.507071 | 8_1:-53670380 | None:intergenic |
| CGAGTACCATGCATTGGTGC+TGG | 0.511219 | 8_1:-53670127 | None:intergenic |
| GCGAAAGACCCTGTTAGATC+GGG | 0.514836 | 8_1:+53670335 | Msa1200770:CDS |
| GTGATCAGTTCGCCGGTGGA+AGG | 0.518910 | 8_1:+53668979 | Msa1200770:CDS |
| AGCTCCTGAAGTTATACTGC+AGG | 0.520770 | 8_1:+53670619 | Msa1200770:CDS |
| GTTCTTTCATCCATTGCTGA+TGG | 0.521395 | 8_1:+53670038 | Msa1200770:CDS |
| AAATCAAGGTGGGGAAGTGA+AGG | 0.521806 | 8_1:+53672101 | Msa1200770:CDS |
| AAAGTCAATAATGTTGAAGA+GGG | 0.523570 | 8_1:-53672157 | None:intergenic |
| AGGTGGATACCATGCTGTCC+GGG | 0.530748 | 8_1:+53668953 | Msa1200770:CDS |
| TTGCTTTCGAGCTTGCCACT+GGG | 0.531169 | 8_1:+53670684 | Msa1200770:CDS |
| ATGAAGGCTTTGATTCCTAC+CGG | 0.531226 | 8_1:+53668928 | Msa1200770:CDS |
| GGATCACCTTGCCCTGATGA+TGG | 0.535748 | 8_1:+53671556 | Msa1200770:intron |
| AGCAACCTTAAAATCAAGGT+GGG | 0.536200 | 8_1:+53672091 | Msa1200770:CDS |
| AGGATTTCTTCGACAGACAC+GGG | 0.536846 | 8_1:+53671825 | Msa1200770:CDS |
| TTGGGCTGATAAGCCATTTG+CGG | 0.537617 | 8_1:+53670571 | Msa1200770:CDS |
| TAGCTCAGAGGAAATTGGGT+TGG | 0.539063 | 8_1:+53669006 | Msa1200770:CDS |
| TTGGTTTGGATTACTTGCAT+AGG | 0.539558 | 8_1:+53670246 | Msa1200770:CDS |
| TGTTGAAGAGGGGACTTAGA+GGG | 0.540241 | 8_1:-53672146 | None:intergenic |
| AATCAAGGTGGGGAAGTGAA+GGG | 0.549534 | 8_1:+53672102 | Msa1200770:exon |
| ATGTTATTTACTCCCAAAGT+CGG | 0.550928 | 8_1:+53670710 | Msa1200770:CDS |
| GATTACTTGCATAGGGAACA+TGG | 0.550939 | 8_1:+53670254 | Msa1200770:CDS |
| CCTTCCGGGGCATCTTTCCA+AGG | 0.553985 | 8_1:-53671583 | None:intergenic |
| GTGGAGCATTGTTGAAGAGA+GGG | 0.558563 | 8_1:+53668697 | Msa1200770:five_prime_UTR |
| GTCGGTGATCAGTTCGCCGG+TGG | 0.559099 | 8_1:+53668975 | Msa1200770:CDS |
| AAAAGTCAATAATGTTGAAG+AGG | 0.559375 | 8_1:-53672158 | None:intergenic |
| ATCAAGGTGGGGAAGTGAAG+GGG | 0.562315 | 8_1:+53672103 | Msa1200770:exon |
| TGAAGGGGCGCCATCAGCAA+TGG | 0.565495 | 8_1:-53670048 | None:intergenic |
| GTTGAAAAGGAGAGCAAGGA+GGG | 0.566829 | 8_1:+53670427 | Msa1200770:CDS |
| TCTGGACAAAGAGCTTCTAT+GGG | 0.567262 | 8_1:+53670464 | Msa1200770:CDS |
| CGGCGAACTGATCACCGACC+CGG | 0.567799 | 8_1:-53668971 | None:intergenic |
| AAGGATTTCTTCGACAGACA+CGG | 0.569862 | 8_1:+53671824 | Msa1200770:CDS |
| GGCTTTGATTCCTACCGGAA+AGG | 0.573918 | 8_1:+53668933 | Msa1200770:CDS |
| ATCTCCCTGACTTTATTCAT+CGG | 0.573932 | 8_1:-53670206 | None:intergenic |
| GGATTGAGAACATACATCGT+TGG | 0.574635 | 8_1:-53669066 | None:intergenic |
| GCTTTGAGACCTCATGGAGG+AGG | 0.574786 | 8_1:-53672349 | None:intergenic |
| GTGTCTGTCGAAGAAATCCT+TGG | 0.579045 | 8_1:-53671822 | None:intergenic |
| GAAATTCGAGTACCATGCAT+TGG | 0.579276 | 8_1:-53670133 | None:intergenic |
| ATTCTGATAGAAATATTGAT+GGG | 0.582335 | 8_1:+53670507 | Msa1200770:CDS |
| GATCTAACAGGGTCTTTCGC+CGG | 0.591268 | 8_1:-53670332 | None:intergenic |
| TTTACTCCCAAAGTCGGACA+AGG | 0.591377 | 8_1:+53670716 | Msa1200770:CDS |
| TCCAAGGAGTTCCATCATCA+GGG | 0.591920 | 8_1:-53671567 | None:intergenic |
| TCATCGGAAGACCTTTGTAA+CGG | 0.595143 | 8_1:-53670190 | None:intergenic |
| CGGGTCGGTGATCAGTTCGC+CGG | 0.595542 | 8_1:+53668972 | Msa1200770:CDS |
| TAGGACCTGTGTGCTTAAAG+TGG | 0.596811 | 8_1:-53670100 | None:intergenic |
| GGGTCTGAAGATGATGATGA+AGG | 0.603847 | 8_1:+53668912 | Msa1200770:CDS |
| GGATACCATGCTGTCCGGGT+CGG | 0.605762 | 8_1:+53668957 | Msa1200770:CDS |
| TTTAAGCACACAGGTCCTAA+CGG | 0.605824 | 8_1:+53670104 | Msa1200770:CDS |
| CTGAGCTATGTACCTTCCAC+CGG | 0.605904 | 8_1:-53668991 | None:intergenic |
| AGACCACATATCGACGGAGA+AGG | 0.607795 | 8_1:-53670651 | None:intergenic |
| AGTATCAAAAGCAAGCCAAA+CGG | 0.608489 | 8_1:-53669042 | None:intergenic |
| ATGGTATCCACCTTTCCGGT+AGG | 0.608525 | 8_1:-53668943 | None:intergenic |
| AATGAGAAATGAATCTAGTG+TGG | 0.608814 | 8_1:+53672048 | Msa1200770:CDS |
| GCCCTGATGATGGAACTCCT+TGG | 0.613944 | 8_1:+53671566 | Msa1200770:CDS |
| GCTCAGAGGAAATTGGGTTG+GGG | 0.614301 | 8_1:+53669008 | Msa1200770:CDS |
| TTTGATTCCTACCGGAAAGG+TGG | 0.616024 | 8_1:+53668936 | Msa1200770:CDS |
| CCTGAAGTTATACTGCAGGC+TGG | 0.616462 | 8_1:+53670623 | Msa1200770:CDS |
| GTCAGATACAACCGTTACAA+AGG | 0.617545 | 8_1:+53670179 | Msa1200770:CDS |
| TGCTTTCGAGCTTGCCACTG+GGG | 0.622478 | 8_1:+53670685 | Msa1200770:CDS |
| GATCACCGACCCGGACAGCA+TGG | 0.622696 | 8_1:-53668962 | None:intergenic |
| GGGAGACTCCCGATCTAACA+GGG | 0.627241 | 8_1:-53670343 | None:intergenic |
| TGGAGCATTGTTGAAGAGAG+GGG | 0.628029 | 8_1:+53668698 | Msa1200770:five_prime_UTR |
| TAACGGCCAGCACCAATGCA+TGG | 0.636403 | 8_1:+53670121 | Msa1200770:CDS |
| GGAGTTCCATCATCAGGGCA+AGG | 0.636676 | 8_1:-53671562 | None:intergenic |
| AGTGGAGCATTGTTGAAGAG+AGG | 0.637170 | 8_1:+53668696 | Msa1200770:five_prime_UTR |
| CTCAGGCCTCTCTAAAATCG+GGG | 0.638151 | 8_1:-53670363 | None:intergenic |
| TCGGGTGCAAAATCAAGAAG+AGG | 0.638735 | 8_1:-53671956 | None:intergenic |
| GTGTATATGACATTCATCCA+AGG | 0.639970 | 8_1:+53672310 | Msa1200770:three_prime_UTR |
| ATCGACCACTTTAAGCACAC+AGG | 0.642901 | 8_1:+53670095 | Msa1200770:CDS |
| GCAACCTTAAAATCAAGGTG+GGG | 0.643577 | 8_1:+53672092 | Msa1200770:CDS |
| AGCAAAAGACCACATATCGA+CGG | 0.644032 | 8_1:-53670657 | None:intergenic |
| GGTGGGAACACTACCTTCCG+GGG | 0.647201 | 8_1:-53671596 | None:intergenic |
| CCTTGGAAAGATGCCCCGGA+AGG | 0.648843 | 8_1:+53671583 | Msa1200770:CDS |
| AAGCAACCTTAAAATCAAGG+TGG | 0.649106 | 8_1:+53672090 | Msa1200770:CDS |
| GGACAAAGAGCTTCTATGGG+AGG | 0.655170 | 8_1:+53670467 | Msa1200770:CDS |
| GGGATCTCAAAAGGATTCGG+AGG | 0.658136 | 8_1:+53671846 | Msa1200770:CDS |
| GGATTTCTTCGACAGACACG+GGG | 0.676658 | 8_1:+53671826 | Msa1200770:CDS |
| TCTTCCGATGAATAAAGTCA+GGG | 0.678520 | 8_1:+53670202 | Msa1200770:CDS |
| GAAAAGGAGAGCAAGGAGGG+CGG | 0.678748 | 8_1:+53670430 | Msa1200770:CDS |
| GATTGATGTTAGATGCAAAG+TGG | 0.684911 | 8_1:+53670529 | Msa1200770:CDS |
| AAGTCAATAATGTTGAAGAG+GGG | 0.686144 | 8_1:-53672156 | None:intergenic |
| AGTTGAAAAGGAGAGCAAGG+AGG | 0.686372 | 8_1:+53670426 | Msa1200770:CDS |
| TACTGCAGGAGTGAAATCCA+AGG | 0.690749 | 8_1:+53671805 | Msa1200770:CDS |
| AGTAAATAACATATCCCCAG+TGG | 0.717830 | 8_1:-53670699 | None:intergenic |
| GTGGAAGGTACATAGCTCAG+AGG | 0.720598 | 8_1:+53668994 | Msa1200770:CDS |
| TGAGGGAAACATAAACGGCG+CGG | 0.758453 | 8_1:+53670382 | Msa1200770:CDS |
| TTAGCTTTGAGACCTCATGG+AGG | 0.773888 | 8_1:-53672352 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAGATTTACATTTTTTTAT+TGG | + | chr8_1:53672218-53672237 | Msa1200770:three_prime_UTR | 10.0% |
| !! | AAATTGTGAGATTATTATTA+AGG | - | chr8_1:53668776-53668795 | None:intergenic | 15.0% |
| !!! | TTTTTGTTTATAATAGTGAT+TGG | + | chr8_1:53669289-53669308 | Msa1200770:intron | 15.0% |
| !! | AATGTAAATCTTATTGAATT+TGG | - | chr8_1:53672211-53672230 | None:intergenic | 15.0% |
| !! | GAATAAAAACTGAAACTTTA+AGG | - | chr8_1:53668859-53668878 | None:intergenic | 20.0% |
| !! | CAAAACAAATCTTTATCTTT+AGG | - | chr8_1:53669090-53669109 | None:intergenic | 20.0% |
| !! | AGATTGCAATAATACAAAAA+GGG | - | chr8_1:53669117-53669136 | None:intergenic | 20.0% |
| !! | TATTCAATGAACCTAAAAAA+TGG | - | chr8_1:53669193-53669212 | None:intergenic | 20.0% |
| !!! | CATTTTCAAATCGATAAATA+CGG | - | chr8_1:53669526-53669545 | None:intergenic | 20.0% |
| !!! | TATTATAGGTTGATAATGAT+TGG | + | chr8_1:53669693-53669712 | Msa1200770:intron | 20.0% |
| !!! | ATTATAGGTTGATAATGATT+GGG | + | chr8_1:53669694-53669713 | Msa1200770:intron | 20.0% |
| !!! | TAAATAGGTGTTAATTTTGT+TGG | + | chr8_1:53669787-53669806 | Msa1200770:intron | 20.0% |
| !! | GATATTTGACAAGAAATAAA+AGG | - | chr8_1:53669921-53669940 | None:intergenic | 20.0% |
| !!! | AACAAATTTTGAATTTGAAG+GGG | - | chr8_1:53670066-53670085 | None:intergenic | 20.0% |
| !!! | CAACAAATTTTGAATTTGAA+GGG | - | chr8_1:53670067-53670086 | None:intergenic | 20.0% |
| !!! | ACAACAAATTTTGAATTTGA+AGG | - | chr8_1:53670068-53670087 | None:intergenic | 20.0% |
| !! | TTATTGAGAAAAAGTTGAAA+AGG | + | chr8_1:53670414-53670433 | Msa1200770:CDS | 20.0% |
| !!! | TCAATATTTCTATCAGAATT+TGG | - | chr8_1:53670506-53670525 | None:intergenic | 20.0% |
| !! | AATTCTGATAGAAATATTGA+TGG | + | chr8_1:53670506-53670525 | Msa1200770:CDS | 20.0% |
| !! | ATTCTGATAGAAATATTGAT+GGG | + | chr8_1:53670507-53670526 | Msa1200770:CDS | 20.0% |
| !!! | TATTGAATAAACAGTCATTT+TGG | + | chr8_1:53670794-53670813 | Msa1200770:intron | 20.0% |
| !! | CTATTATATCATGTATAGTT+AGG | - | chr8_1:53671096-53671115 | None:intergenic | 20.0% |
| !!! | TAATAGTTGTTACTTTATTG+AGG | + | chr8_1:53671231-53671250 | Msa1200770:intron | 20.0% |
| !!! | TATAGTTTTGAATCTTTGAT+TGG | + | chr8_1:53671408-53671427 | Msa1200770:intron | 20.0% |
| !!! | TGATTGTGGTTTTATTTTTT+TGG | + | chr8_1:53672180-53672199 | Msa1200770:three_prime_UTR | 20.0% |
| !! | AAATTTCTGTCAAATATCTA+TGG | - | chr8_1:53672288-53672307 | None:intergenic | 20.0% |
| ! | CAGATTGCAATAATACAAAA+AGG | - | chr8_1:53669118-53669137 | None:intergenic | 25.0% |
| ! | TTGTTTATAATAGTGATTGG+AGG | + | chr8_1:53669292-53669311 | Msa1200770:intron | 25.0% |
| ! | GATATATGTGATGTTTGAAA+TGG | + | chr8_1:53669374-53669393 | Msa1200770:intron | 25.0% |
| !!! | TCTGAGTTTCGATTTTAATT+TGG | + | chr8_1:53669847-53669866 | Msa1200770:intron | 25.0% |
| ! | ATAGCTAAATGTTAAGACTT+TGG | + | chr8_1:53669871-53669890 | Msa1200770:intron | 25.0% |
| ! | TAGCTAAATGTTAAGACTTT+GGG | + | chr8_1:53669872-53669891 | Msa1200770:intron | 25.0% |
| !!! | ATTTGTCAATGCATTTTGAT+TGG | + | chr8_1:53670227-53670246 | Msa1200770:CDS | 25.0% |
| !!! | GAAGAACATTTTCAAGTTTT+AGG | - | chr8_1:53670295-53670314 | None:intergenic | 25.0% |
| ! | AAAACTTGAAAATGTTCTTC+TGG | + | chr8_1:53670295-53670314 | Msa1200770:CDS | 25.0% |
| !!! | GAGGATGTTTTTTGTAATTT+TGG | - | chr8_1:53670863-53670882 | None:intergenic | 25.0% |
| ! | ATCTTCTGTTAGTAATTTGA+TGG | - | chr8_1:53670906-53670925 | None:intergenic | 25.0% |
| ! | TAAGTTCATATTTGACAGTT+CGG | - | chr8_1:53671151-53671170 | None:intergenic | 25.0% |
| ! | GTTAATGAGAAATCAATTCA+AGG | + | chr8_1:53671268-53671287 | Msa1200770:intron | 25.0% |
| ! | CTTCAATGAATTCCATTATT+GGG | - | chr8_1:53671299-53671318 | None:intergenic | 25.0% |
| ! | TCTTCAATGAATTCCATTAT+TGG | - | chr8_1:53671300-53671319 | None:intergenic | 25.0% |
| ! | GCAAAAGAAGAAACATATAA+TGG | - | chr8_1:53671458-53671477 | None:intergenic | 25.0% |
| ! | ATTTAATACTTGCATGTTAC+AGG | + | chr8_1:53671778-53671797 | Msa1200770:intron | 25.0% |
| !!! | TCAATCAATAGTTTGTTAAG+AGG | - | chr8_1:53671884-53671903 | None:intergenic | 25.0% |
| ! | AATAAGCAACCTTAAAATCA+AGG | + | chr8_1:53672087-53672106 | Msa1200770:CDS | 25.0% |
| ! | AAAGTCAATAATGTTGAAGA+GGG | - | chr8_1:53672160-53672179 | None:intergenic | 25.0% |
| ! | AAAAGTCAATAATGTTGAAG+AGG | - | chr8_1:53672161-53672180 | None:intergenic | 25.0% |
| !!! | ACATTATTGACTTTTGATTG+TGG | + | chr8_1:53672166-53672185 | Msa1200770:three_prime_UTR | 25.0% |
| !!! | GTGGTTTTATTTTTTTGGTT+TGG | + | chr8_1:53672185-53672204 | Msa1200770:three_prime_UTR | 25.0% |
| !! | ACAGTTGAAAAAGCATTGAA+AGG | + | chr8_1:53668641-53668660 | Msa1200770:five_prime_UTR | 30.0% |
| AAGAGAAAGAGAGAAAAAAG+TGG | + | chr8_1:53668678-53668697 | Msa1200770:five_prime_UTR | 30.0% | |
| ! | GATTGTTGTTGTTCTATTTG+TGG | - | chr8_1:53668745-53668764 | None:intergenic | 30.0% |
| !! | TTGCAATCTGTTTTGAATCT+TGG | + | chr8_1:53669128-53669147 | Msa1200770:intron | 30.0% |
| ! | GTTTTGTATGCATTAATTGC+TGG | + | chr8_1:53669154-53669173 | Msa1200770:intron | 30.0% |
| !!! | GTGGCAAAAAACCATTTTTT+AGG | + | chr8_1:53669179-53669198 | Msa1200770:intron | 30.0% |
| !!! | AGGATGTATTTTTTGTGCAA+GGG | + | chr8_1:53669312-53669331 | Msa1200770:intron | 30.0% |
| ! | TAATTTTGAATGGATCGGAT+TGG | + | chr8_1:53669337-53669356 | Msa1200770:intron | 30.0% |
| ! | GATGTTTGAAATGGTGAAAT+TGG | + | chr8_1:53669383-53669402 | Msa1200770:intron | 30.0% |
| TAGAAATGTGAATGTGGATT+TGG | + | chr8_1:53669417-53669436 | Msa1200770:intron | 30.0% | |
| TTAAGATATTCTCCAAATGC+AGG | - | chr8_1:53669447-53669466 | None:intergenic | 30.0% | |
| AACACAAGATGCAAAACTAT+AGG | - | chr8_1:53669474-53669493 | None:intergenic | 30.0% | |
| !! | TATAGTTTTGCATCTTGTGT+TGG | + | chr8_1:53669473-53669492 | Msa1200770:intron | 30.0% |
| ATCAACCTATAATAGCTAAG+AGG | - | chr8_1:53669687-53669706 | None:intergenic | 30.0% | |
| ! | TGCGTTATGATCCTTTTTAA+TGG | + | chr8_1:53669725-53669744 | Msa1200770:intron | 30.0% |
| ! | TCCTTTTTAATGGTAACACT+TGG | + | chr8_1:53669735-53669754 | Msa1200770:intron | 30.0% |
| ACCAAGTGTTACCATTAAAA+AGG | - | chr8_1:53669739-53669758 | None:intergenic | 30.0% | |
| GCAATTGTGCATCTATAAAT+AGG | + | chr8_1:53669772-53669791 | Msa1200770:intron | 30.0% | |
| AGCTAAATGTTAAGACTTTG+GGG | + | chr8_1:53669873-53669892 | Msa1200770:intron | 30.0% | |
| !!! | TCAATGCATTTTGATTGGTT+TGG | + | chr8_1:53670232-53670251 | Msa1200770:CDS | 30.0% |
| ! | ATGTTATTTACTCCCAAAGT+CGG | + | chr8_1:53670710-53670729 | Msa1200770:CDS | 30.0% |
| !!! | TTGTAATTTTGGCTAATTCG+AGG | - | chr8_1:53670852-53670871 | None:intergenic | 30.0% |
| ! | TTTTGGTCGTTAAATCTGTT+AGG | - | chr8_1:53670983-53671002 | None:intergenic | 30.0% |
| AATGAGAAATCAATTCAAGG+AGG | + | chr8_1:53671271-53671290 | Msa1200770:intron | 30.0% | |
| TATGTCAGCTTGACATTAAA+TGG | - | chr8_1:53671338-53671357 | None:intergenic | 30.0% | |
| GAAGAAACATATAATGGTCT+TGG | - | chr8_1:53671452-53671471 | None:intergenic | 30.0% | |
| ! | AACCAATCTTTGCATTTTGT+CGG | + | chr8_1:53671528-53671547 | Msa1200770:intron | 30.0% |
| TCGTATTAAATAGTGTAACG+CGG | - | chr8_1:53671645-53671664 | None:intergenic | 30.0% | |
| AAATTTGCCACAGTTAGTTA+CGG | - | chr8_1:53671762-53671781 | None:intergenic | 30.0% | |
| GATTCATTTCTCATTTCATC+AGG | - | chr8_1:53672043-53672062 | None:intergenic | 30.0% | |
| AATGAGAAATGAATCTAGTG+TGG | + | chr8_1:53672048-53672067 | Msa1200770:CDS | 30.0% | |
| AAGTCAATAATGTTGAAGAG+GGG | - | chr8_1:53672159-53672178 | None:intergenic | 30.0% | |
| ! | ATGTCTTGTTCTTCTTCATC+TGG | + | chr8_1:53668891-53668910 | Msa1200770:CDS | 35.0% |
| ! | TGTCTTGTTCTTCTTCATCT+GGG | + | chr8_1:53668892-53668911 | Msa1200770:CDS | 35.0% |
| TACATAGCTCAGAGGAAATT+GGG | + | chr8_1:53669002-53669021 | Msa1200770:CDS | 35.0% | |
| AGTATCAAAAGCAAGCCAAA+CGG | - | chr8_1:53669045-53669064 | None:intergenic | 35.0% | |
| TTGTATGCATTAATTGCTGG+TGG | + | chr8_1:53669157-53669176 | Msa1200770:intron | 35.0% | |
| !!! | GAGGATGTATTTTTTGTGCA+AGG | + | chr8_1:53669311-53669330 | Msa1200770:intron | 35.0% |
| !! | TGCAAGGGTGTAATTTTGAA+TGG | + | chr8_1:53669327-53669346 | Msa1200770:intron | 35.0% |
| ! | GGGTGTAATTTTGAATGGAT+CGG | + | chr8_1:53669332-53669351 | Msa1200770:intron | 35.0% |
| GAAATGGTGAAATTGGTGAA+TGG | + | chr8_1:53669390-53669409 | Msa1200770:intron | 35.0% | |
| GGTCATTAGAAATGTGAATG+TGG | + | chr8_1:53669411-53669430 | Msa1200770:intron | 35.0% | |
| GGATGGTCAGATATGTATAA+TGG | + | chr8_1:53669566-53669585 | Msa1200770:intron | 35.0% | |
| TGGTCAGATATGTATAATGG+TGG | + | chr8_1:53669569-53669588 | Msa1200770:intron | 35.0% | |
| TGGAAAATTTAGCATATGCG+TGG | + | chr8_1:53669589-53669608 | Msa1200770:intron | 35.0% | |
| TTTAGCATATGCGTGGAATT+TGG | + | chr8_1:53669596-53669615 | Msa1200770:intron | 35.0% | |
| ATAGATTTGTCTCTTTGCAG+AGG | + | chr8_1:53669632-53669651 | Msa1200770:intron | 35.0% | |
| ! | TTTAATGGTAACACTTGGTG+CGG | + | chr8_1:53669740-53669759 | Msa1200770:intron | 35.0% |
| AGTTTATAGTGAGCTGCATA+TGG | + | chr8_1:53669812-53669831 | Msa1200770:intron | 35.0% | |
| AAAATCGAAACTCAGAACCA+TGG | - | chr8_1:53669843-53669862 | None:intergenic | 35.0% | |
| TCTTCCGATGAATAAAGTCA+GGG | + | chr8_1:53670202-53670221 | Msa1200770:CDS | 35.0% | |
| ATCTCCCTGACTTTATTCAT+CGG | - | chr8_1:53670209-53670228 | None:intergenic | 35.0% | |
| !! | TTGGTTTGGATTACTTGCAT+AGG | + | chr8_1:53670246-53670265 | Msa1200770:CDS | 35.0% |
| ! | TGGTTTGGATTACTTGCATA+GGG | + | chr8_1:53670247-53670266 | Msa1200770:CDS | 35.0% |
| AAAAGTTGAAAAGGAGAGCA+AGG | + | chr8_1:53670423-53670442 | Msa1200770:CDS | 35.0% | |
| GATTGATGTTAGATGCAAAG+TGG | + | chr8_1:53670529-53670548 | Msa1200770:CDS | 35.0% | |
| !! | AGATGCAAAGTGGTTGATTT+TGG | + | chr8_1:53670539-53670558 | Msa1200770:CDS | 35.0% |
| !! | TTGATTTTGGAAATGCGTGT+TGG | + | chr8_1:53670552-53670571 | Msa1200770:CDS | 35.0% |
| !! | TGATTTTGGAAATGCGTGTT+GGG | + | chr8_1:53670553-53670572 | Msa1200770:CDS | 35.0% |
| AGTAAATAACATATCCCCAG+TGG | - | chr8_1:53670702-53670721 | None:intergenic | 35.0% | |
| ! | TTTTGGTCCTTGAATGTGTT+AGG | + | chr8_1:53670811-53670830 | Msa1200770:intron | 35.0% |
| TAACGACCAAAATGAGTGTT+CGG | + | chr8_1:53670991-53671010 | Msa1200770:intron | 35.0% | |
| ! | CAATATCCGAACACTCATTT+TGG | - | chr8_1:53671000-53671019 | None:intergenic | 35.0% |
| GGGTCATATGTTCATATGAA+AGG | + | chr8_1:53671022-53671041 | Msa1200770:intron | 35.0% | |
| TCATATGAAAGGAAAGCTTC+TGG | + | chr8_1:53671033-53671052 | Msa1200770:intron | 35.0% | |
| ATTGAAGATACCTGTGTTAC+CGG | + | chr8_1:53671312-53671331 | Msa1200770:intron | 35.0% | |
| AACCGACAAAATGCAAAGAT+TGG | - | chr8_1:53671533-53671552 | None:intergenic | 35.0% | |
| CAATAACAATGACATGCAGA+CGG | - | chr8_1:53671620-53671639 | None:intergenic | 35.0% | |
| ! | TACGAAGTGTTCTCAAATAG+TGG | + | chr8_1:53671660-53671679 | Msa1200770:intron | 35.0% |
| TGAATCTAGTGTGGAAAAAG+TGG | + | chr8_1:53672057-53672076 | Msa1200770:CDS | 35.0% | |
| AAGCAACCTTAAAATCAAGG+TGG | + | chr8_1:53672090-53672109 | Msa1200770:CDS | 35.0% | |
| AGCAACCTTAAAATCAAGGT+GGG | + | chr8_1:53672091-53672110 | Msa1200770:CDS | 35.0% | |
| GTGTATATGACATTCATCCA+AGG | + | chr8_1:53672310-53672329 | Msa1200770:three_prime_UTR | 35.0% | |
| GAAAACAAAAAGACTTGCCT+TGG | - | chr8_1:53672330-53672349 | None:intergenic | 35.0% | |
| ! | ATGAAGGCTTTGATTCCTAC+CGG | + | chr8_1:53668928-53668947 | Msa1200770:CDS | 40.0% |
| GTACATAGCTCAGAGGAAAT+TGG | + | chr8_1:53669001-53669020 | Msa1200770:CDS | 40.0% | |
| GGATTGAGAACATACATCGT+TGG | - | chr8_1:53669069-53669088 | None:intergenic | 40.0% | |
| TATGCATTAATTGCTGGTGG+TGG | + | chr8_1:53669160-53669179 | Msa1200770:intron | 40.0% | |
| GGATTTGGATTTCCTGCATT+TGG | + | chr8_1:53669432-53669451 | Msa1200770:intron | 40.0% | |
| GTGAGTTGTCTGATCTTGAT+TGG | + | chr8_1:53669545-53669564 | Msa1200770:intron | 40.0% | |
| GTTGTCTGATCTTGATTGGA+TGG | + | chr8_1:53669549-53669568 | Msa1200770:intron | 40.0% | |
| TTGCGCCTCTTAGCTATTAT+AGG | + | chr8_1:53669679-53669698 | Msa1200770:intron | 40.0% | |
| AGCTGCATATGGAAATACCA+TGG | + | chr8_1:53669823-53669842 | Msa1200770:intron | 40.0% | |
| GGAAAACAAAAATTCCGCAC+AGG | - | chr8_1:53669900-53669919 | None:intergenic | 40.0% | |
| GTTCTTTCATCCATTGCTGA+TGG | + | chr8_1:53670038-53670057 | Msa1200770:CDS | 40.0% | |
| GCTTAAAGTGGTCGATCAAT+TGG | - | chr8_1:53670091-53670110 | None:intergenic | 40.0% | |
| TTTAAGCACACAGGTCCTAA+CGG | + | chr8_1:53670104-53670123 | Msa1200770:CDS | 40.0% | |
| GAAATTCGAGTACCATGCAT+TGG | - | chr8_1:53670136-53670155 | None:intergenic | 40.0% | |
| TGCATGGTACTCGAATTTCT+TGG | + | chr8_1:53670137-53670156 | Msa1200770:CDS | 40.0% | |
| GTCAGATACAACCGTTACAA+AGG | + | chr8_1:53670179-53670198 | Msa1200770:CDS | 40.0% | |
| TCATCGGAAGACCTTTGTAA+CGG | - | chr8_1:53670193-53670212 | None:intergenic | 40.0% | |
| GTCTTCCGATGAATAAAGTC+AGG | + | chr8_1:53670201-53670220 | Msa1200770:CDS | 40.0% | |
| GATTACTTGCATAGGGAACA+TGG | + | chr8_1:53670254-53670273 | Msa1200770:CDS | 40.0% | |
| ! | TCTGGTTTCTACTATCGATC+CGG | + | chr8_1:53670313-53670332 | Msa1200770:CDS | 40.0% |
| TTCTGGACAAAGAGCTTCTA+TGG | + | chr8_1:53670463-53670482 | Msa1200770:CDS | 40.0% | |
| TCTGGACAAAGAGCTTCTAT+GGG | + | chr8_1:53670464-53670483 | Msa1200770:CDS | 40.0% | |
| GTCTGAATTTCTTCCGCAAA+TGG | - | chr8_1:53670587-53670606 | None:intergenic | 40.0% | |
| AGCAAAAGACCACATATCGA+CGG | - | chr8_1:53670660-53670679 | None:intergenic | 40.0% | |
| CTAAAACCTTGTCCGACTTT+GGG | - | chr8_1:53670725-53670744 | None:intergenic | 40.0% | |
| GTTAGCACCTAACACATTCA+AGG | - | chr8_1:53670821-53670840 | None:intergenic | 40.0% | |
| AATGAGTGTTCGGATATTGC+AGG | + | chr8_1:53671001-53671020 | Msa1200770:intron | 40.0% | |
| ATGAGTGTTCGGATATTGCA+GGG | + | chr8_1:53671002-53671021 | Msa1200770:intron | 40.0% | |
| TCAGCTTGACATTAAATGGC+CGG | - | chr8_1:53671334-53671353 | None:intergenic | 40.0% | |
| AGTTACGGTGTAGTCAATCA+TGG | - | chr8_1:53671747-53671766 | None:intergenic | 40.0% | |
| AAGGATTTCTTCGACAGACA+CGG | + | chr8_1:53671824-53671843 | Msa1200770:CDS | 40.0% | |
| ! | GGATTCGGAGGCTAAAATTT+TGG | + | chr8_1:53671858-53671877 | Msa1200770:CDS | 40.0% |
| AGTGTGGAAAAAGTGGATGT+TGG | + | chr8_1:53672064-53672083 | Msa1200770:CDS | 40.0% | |
| GCAACCTTAAAATCAAGGTG+GGG | + | chr8_1:53672092-53672111 | Msa1200770:CDS | 40.0% | |
| ! | ACTTCCCCACCTTGATTTTA+AGG | - | chr8_1:53672099-53672118 | None:intergenic | 40.0% |
| !!! | TTTTGTTTTCCTCCTCCATG+AGG | + | chr8_1:53672340-53672359 | Msa1200770:three_prime_UTR | 40.0% |
| !! | AGTGGAGCATTGTTGAAGAG+AGG | + | chr8_1:53668696-53668715 | Msa1200770:five_prime_UTR | 45.0% |
| !! | GTGGAGCATTGTTGAAGAGA+GGG | + | chr8_1:53668697-53668716 | Msa1200770:five_prime_UTR | 45.0% |
| !! | TGGAGCATTGTTGAAGAGAG+GGG | + | chr8_1:53668698-53668717 | Msa1200770:five_prime_UTR | 45.0% |
| ! | GGGTCTGAAGATGATGATGA+AGG | + | chr8_1:53668912-53668931 | Msa1200770:CDS | 45.0% |
| TTTGATTCCTACCGGAAAGG+TGG | + | chr8_1:53668936-53668955 | Msa1200770:CDS | 45.0% | |
| TAGCTCAGAGGAAATTGGGT+TGG | + | chr8_1:53669006-53669025 | Msa1200770:CDS | 45.0% | |
| AGCTCAGAGGAAATTGGGTT+GGG | + | chr8_1:53669007-53669026 | Msa1200770:CDS | 45.0% | |
| GTCTCTTTGCAGAGGACTTA+AGG | + | chr8_1:53669640-53669659 | Msa1200770:intron | 45.0% | |
| ATCGACCACTTTAAGCACAC+AGG | + | chr8_1:53670095-53670114 | Msa1200770:CDS | 45.0% | |
| TAGGACCTGTGTGCTTAAAG+TGG | - | chr8_1:53670103-53670122 | None:intergenic | 45.0% | |
| AGGCCTGAGGGAAACATAAA+CGG | + | chr8_1:53670377-53670396 | Msa1200770:CDS | 45.0% | |
| AGTTGAAAAGGAGAGCAAGG+AGG | + | chr8_1:53670426-53670445 | Msa1200770:CDS | 45.0% | |
| GTTGAAAAGGAGAGCAAGGA+GGG | + | chr8_1:53670427-53670446 | Msa1200770:CDS | 45.0% | |
| AGGGCGGTAGCTAAAATTTC+TGG | + | chr8_1:53670446-53670465 | Msa1200770:CDS | 45.0% | |
| AAGAGCTTCTATGGGAGGAA+TGG | + | chr8_1:53670472-53670491 | Msa1200770:CDS | 45.0% | |
| AGAGCTTCTATGGGAGGAAT+GGG | + | chr8_1:53670473-53670492 | Msa1200770:CDS | 45.0% | |
| TTGGGCTGATAAGCCATTTG+CGG | + | chr8_1:53670571-53670590 | Msa1200770:CDS | 45.0% | |
| AGCTCCTGAAGTTATACTGC+AGG | + | chr8_1:53670619-53670638 | Msa1200770:CDS | 45.0% | |
| ATTCCTTCTCCGTCGATATG+TGG | + | chr8_1:53670648-53670667 | Msa1200770:CDS | 45.0% | |
| TTTACTCCCAAAGTCGGACA+AGG | + | chr8_1:53670716-53670735 | Msa1200770:CDS | 45.0% | |
| GCTAAAACCTTGTCCGACTT+TGG | - | chr8_1:53670726-53670745 | None:intergenic | 45.0% | |
| CCAAACTAACGAGACATTGG+AGG | - | chr8_1:53670882-53670901 | None:intergenic | 45.0% | |
| CCTCCAATGTCTCGTTAGTT+TGG | + | chr8_1:53670879-53670898 | Msa1200770:intron | 45.0% | |
| GGACCAAACTAACGAGACAT+TGG | - | chr8_1:53670885-53670904 | None:intergenic | 45.0% | |
| !! | AGGAAAGCTTCTGGAACAGT+TGG | + | chr8_1:53671042-53671061 | Msa1200770:intron | 45.0% |
| !! | TTCAAGGAGGCACCCAATAA+TGG | + | chr8_1:53671284-53671303 | Msa1200770:intron | 45.0% |
| CATTAAATGGCCGGTAACAC+AGG | - | chr8_1:53671325-53671344 | None:intergenic | 45.0% | |
| CTTTGTGAGTCTCTACACCT+CGG | + | chr8_1:53671490-53671509 | Msa1200770:intron | 45.0% | |
| TTATCCTGACATGCTATCCG+AGG | - | chr8_1:53671510-53671529 | None:intergenic | 45.0% | |
| !! | CTTTGCATTTTGTCGGTTGC+AGG | + | chr8_1:53671535-53671554 | Msa1200770:intron | 45.0% |
| TCCAAGGAGTTCCATCATCA+GGG | - | chr8_1:53671570-53671589 | None:intergenic | 45.0% | |
| TTCCAAGGAGTTCCATCATC+AGG | - | chr8_1:53671571-53671590 | None:intergenic | 45.0% | |
| AACAATGACATGCAGACGGT+GGG | - | chr8_1:53671616-53671635 | None:intergenic | 45.0% | |
| TAACAATGACATGCAGACGG+TGG | - | chr8_1:53671617-53671636 | None:intergenic | 45.0% | |
| GACTACACCGTAACTAACTG+TGG | + | chr8_1:53671752-53671771 | Msa1200770:intron | 45.0% | |
| ATGTTACAGGTTGCTACTGC+AGG | + | chr8_1:53671791-53671810 | Msa1200770:intron | 45.0% | |
| TACTGCAGGAGTGAAATCCA+AGG | + | chr8_1:53671805-53671824 | Msa1200770:CDS | 45.0% | |
| GTGTCTGTCGAAGAAATCCT+TGG | - | chr8_1:53671825-53671844 | None:intergenic | 45.0% | |
| AGGATTTCTTCGACAGACAC+GGG | + | chr8_1:53671825-53671844 | Msa1200770:CDS | 45.0% | |
| ACGGGGATCTCAAAAGGATT+CGG | + | chr8_1:53671843-53671862 | Msa1200770:CDS | 45.0% | |
| TCGGGTGCAAAATCAAGAAG+AGG | - | chr8_1:53671959-53671978 | None:intergenic | 45.0% | |
| ! | AGTCCTTTTCCATGAGCCAA+GGG | - | chr8_1:53672015-53672034 | None:intergenic | 45.0% |
| AAATCAAGGTGGGGAAGTGA+AGG | + | chr8_1:53672101-53672120 | Msa1200770:CDS | 45.0% | |
| AATCAAGGTGGGGAAGTGAA+GGG | + | chr8_1:53672102-53672121 | Msa1200770:exon | 45.0% | |
| TGTTGAAGAGGGGACTTAGA+GGG | - | chr8_1:53672149-53672168 | None:intergenic | 45.0% | |
| ATGTTGAAGAGGGGACTTAG+AGG | - | chr8_1:53672150-53672169 | None:intergenic | 45.0% | |
| !! | TTAGCTTTGAGACCTCATGG+AGG | - | chr8_1:53672355-53672374 | None:intergenic | 45.0% |
| !! | CTCTTAGCTTTGAGACCTCA+TGG | - | chr8_1:53672358-53672377 | None:intergenic | 45.0% |
| ! | GGCTTTGATTCCTACCGGAA+AGG | + | chr8_1:53668933-53668952 | Msa1200770:CDS | 50.0% |
| ATGGTATCCACCTTTCCGGT+AGG | - | chr8_1:53668946-53668965 | None:intergenic | 50.0% | |
| CAGCATGGTATCCACCTTTC+CGG | - | chr8_1:53668950-53668969 | None:intergenic | 50.0% | |
| AAGGTGGATACCATGCTGTC+CGG | + | chr8_1:53668952-53668971 | Msa1200770:CDS | 50.0% | |
| CTGAGCTATGTACCTTCCAC+CGG | - | chr8_1:53668994-53669013 | None:intergenic | 50.0% | |
| ! | GTGGAAGGTACATAGCTCAG+AGG | + | chr8_1:53668994-53669013 | Msa1200770:CDS | 50.0% |
| ! | GCTCAGAGGAAATTGGGTTG+GGG | + | chr8_1:53669008-53669027 | Msa1200770:CDS | 50.0% |
| ! | GGGGTCAGTTTTCAACCGTT+TGG | + | chr8_1:53669027-53669046 | Msa1200770:CDS | 50.0% |
| !! | TAAGACTTTGGGGTCCTGTG+CGG | + | chr8_1:53669883-53669902 | Msa1200770:intron | 50.0% |
| ! | CAAACTGCGCTGCACTTTTC+TGG | - | chr8_1:53669992-53670011 | None:intergenic | 50.0% |
| ! | AAGTGCAGCGCAGTTTGTTC+AGG | + | chr8_1:53669995-53670014 | Msa1200770:CDS | 50.0% |
| GATCTAACAGGGTCTTTCGC+CGG | - | chr8_1:53670335-53670354 | None:intergenic | 50.0% | |
| GGCGAAAGACCCTGTTAGAT+CGG | + | chr8_1:53670334-53670353 | Msa1200770:CDS | 50.0% | |
| GCGAAAGACCCTGTTAGATC+GGG | + | chr8_1:53670335-53670354 | Msa1200770:CDS | 50.0% | |
| !! | GAGTCTCCCCGATTTTAGAG+AGG | + | chr8_1:53670357-53670376 | Msa1200770:CDS | 50.0% |
| !! | CTCAGGCCTCTCTAAAATCG+GGG | - | chr8_1:53670366-53670385 | None:intergenic | 50.0% |
| !! | CCTCAGGCCTCTCTAAAATC+GGG | - | chr8_1:53670367-53670386 | None:intergenic | 50.0% |
| !! | CCCTCAGGCCTCTCTAAAAT+CGG | - | chr8_1:53670368-53670387 | None:intergenic | 50.0% |
| !! | CCGATTTTAGAGAGGCCTGA+GGG | + | chr8_1:53670365-53670384 | Msa1200770:CDS | 50.0% |
| TGAGGGAAACATAAACGGCG+CGG | + | chr8_1:53670382-53670401 | Msa1200770:CDS | 50.0% | |
| GGACAAAGAGCTTCTATGGG+AGG | + | chr8_1:53670467-53670486 | Msa1200770:CDS | 50.0% | |
| CCAGCCTGCAGTATAACTTC+AGG | - | chr8_1:53670626-53670645 | None:intergenic | 50.0% | |
| CCTGAAGTTATACTGCAGGC+TGG | + | chr8_1:53670623-53670642 | Msa1200770:CDS | 50.0% | |
| AGACCACATATCGACGGAGA+AGG | - | chr8_1:53670654-53670673 | None:intergenic | 50.0% | |
| ATTGCTTTCGAGCTTGCCAC+TGG | + | chr8_1:53670683-53670702 | Msa1200770:CDS | 50.0% | |
| TTGCTTTCGAGCTTGCCACT+GGG | + | chr8_1:53670684-53670703 | Msa1200770:CDS | 50.0% | |
| !! | AGTCGGACAAGGTTTTAGCG+AGG | + | chr8_1:53670727-53670746 | Msa1200770:CDS | 50.0% |
| !! | ACAAGGTTTTAGCGAGGACG+AGG | + | chr8_1:53670733-53670752 | Msa1200770:CDS | 50.0% |
| TACACCTCGGATAGCATGTC+AGG | + | chr8_1:53671503-53671522 | Msa1200770:intron | 50.0% | |
| AACTCCTTGGAAAGATGCCC+CGG | + | chr8_1:53671579-53671598 | Msa1200770:CDS | 50.0% | |
| TTTGCCACGCTGCAAAGCTA+TGG | - | chr8_1:53671697-53671716 | None:intergenic | 50.0% | |
| GGATTTCTTCGACAGACACG+GGG | + | chr8_1:53671826-53671845 | Msa1200770:CDS | 50.0% | |
| ACAGACACGGGGATCTCAAA+AGG | + | chr8_1:53671837-53671856 | Msa1200770:CDS | 50.0% | |
| GGGATCTCAAAAGGATTCGG+AGG | + | chr8_1:53671846-53671865 | Msa1200770:CDS | 50.0% | |
| TTCTGCAGTTGGTCGCTTCT+CGG | - | chr8_1:53671978-53671997 | None:intergenic | 50.0% | |
| ACACCCTTGGCTCATGGAAA+AGG | + | chr8_1:53672009-53672028 | Msa1200770:CDS | 50.0% | |
| ! | GAGTCCTTTTCCATGAGCCA+AGG | - | chr8_1:53672016-53672035 | None:intergenic | 50.0% |
| ATCAAGGTGGGGAAGTGAAG+GGG | + | chr8_1:53672103-53672122 | Msa1200770:exon | 50.0% | |
| AGGTGGATACCATGCTGTCC+GGG | + | chr8_1:53668953-53668972 | Msa1200770:CDS | 55.0% | |
| !! | ATGCATTGGTGCTGGCCGTT+AGG | - | chr8_1:53670122-53670141 | None:intergenic | 55.0% |
| TAACGGCCAGCACCAATGCA+TGG | + | chr8_1:53670121-53670140 | Msa1200770:CDS | 55.0% | |
| ! | CGAGTACCATGCATTGGTGC+TGG | - | chr8_1:53670130-53670149 | None:intergenic | 55.0% |
| GGGAGACTCCCGATCTAACA+GGG | - | chr8_1:53670346-53670365 | None:intergenic | 55.0% | |
| !! | CCCGATTTTAGAGAGGCCTG+AGG | + | chr8_1:53670364-53670383 | Msa1200770:CDS | 55.0% |
| GCGCCGTTTATGTTTCCCTC+AGG | - | chr8_1:53670383-53670402 | None:intergenic | 55.0% | |
| GAAAAGGAGAGCAAGGAGGG+CGG | + | chr8_1:53670430-53670449 | Msa1200770:CDS | 55.0% | |
| TGCTTTCGAGCTTGCCACTG+GGG | + | chr8_1:53670685-53670704 | Msa1200770:CDS | 55.0% | |
| GGATCACCTTGCCCTGATGA+TGG | + | chr8_1:53671556-53671575 | Msa1200770:intron | 55.0% | |
| GGAGTTCCATCATCAGGGCA+AGG | - | chr8_1:53671565-53671584 | None:intergenic | 55.0% | |
| !! | GCCCTGATGATGGAACTCCT+TGG | + | chr8_1:53671566-53671585 | Msa1200770:CDS | 55.0% |
| ACGGTGGGAACACTACCTTC+CGG | - | chr8_1:53671601-53671620 | None:intergenic | 55.0% | |
| ! | AGCACCATAGCTTTGCAGCG+TGG | + | chr8_1:53671690-53671709 | Msa1200770:intron | 55.0% |
| TCTGCAGTTGGTCGCTTCTC+GGG | - | chr8_1:53671977-53671996 | None:intergenic | 55.0% | |
| ! | TGCAGGCACTGTTCTGCAGT+TGG | - | chr8_1:53671989-53672008 | None:intergenic | 55.0% |
| AACAGTGCCTGCAACACCCT+TGG | + | chr8_1:53671996-53672015 | Msa1200770:CDS | 55.0% | |
| !! | GCTTTGAGACCTCATGGAGG+AGG | - | chr8_1:53672352-53672371 | None:intergenic | 55.0% |
| GGATACCATGCTGTCCGGGT+CGG | + | chr8_1:53668957-53668976 | Msa1200770:CDS | 60.0% | |
| GTGATCAGTTCGCCGGTGGA+AGG | + | chr8_1:53668979-53668998 | Msa1200770:CDS | 60.0% | |
| !! | TGAAGGGGCGCCATCAGCAA+TGG | - | chr8_1:53670051-53670070 | None:intergenic | 60.0% |
| GGGGAGACTCCCGATCTAAC+AGG | - | chr8_1:53670347-53670366 | None:intergenic | 60.0% | |
| ! | CCTTCCGGGGCATCTTTCCA+AGG | - | chr8_1:53671586-53671605 | None:intergenic | 60.0% |
| CCTTGGAAAGATGCCCCGGA+AGG | + | chr8_1:53671583-53671602 | Msa1200770:CDS | 60.0% | |
| GGTGGGAACACTACCTTCCG+GGG | - | chr8_1:53671599-53671618 | None:intergenic | 60.0% | |
| CGGTGGGAACACTACCTTCC+GGG | - | chr8_1:53671600-53671619 | None:intergenic | 60.0% | |
| !! | CCATGAGCCAAGGGTGTTGC+AGG | - | chr8_1:53672006-53672025 | None:intergenic | 60.0% |
| CCTGCAACACCCTTGGCTCA+TGG | + | chr8_1:53672003-53672022 | Msa1200770:CDS | 60.0% | |
| GATCACCGACCCGGACAGCA+TGG | - | chr8_1:53668965-53668984 | None:intergenic | 65.0% | |
| CGGCGAACTGATCACCGACC+CGG | - | chr8_1:53668974-53668993 | None:intergenic | 65.0% | |
| CGGGTCGGTGATCAGTTCGC+CGG | + | chr8_1:53668972-53668991 | Msa1200770:CDS | 65.0% | |
| GTCGGTGATCAGTTCGCCGG+TGG | + | chr8_1:53668975-53668994 | Msa1200770:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 53668629 | 53672392 | 53668629 | ID=Msa1200770;Name=Msa1200770 |
| chr8_1 | mRNA | 53668629 | 53672392 | 53668629 | ID=Msa1200770-mRNA-1;Parent=Msa1200770;Name=Msa1200770-mRNA-1;_AED=0.01;_eAED=0.01;_QI=262|1|1|1|1|1|4|272|445 |
| chr8_1 | exon | 53668629 | 53669073 | 53668629 | ID=Msa1200770-mRNA-1:exon:17134;Parent=Msa1200770-mRNA-1 |
| chr8_1 | exon | 53669969 | 53670754 | 53669969 | ID=Msa1200770-mRNA-1:exon:17135;Parent=Msa1200770-mRNA-1 |
| chr8_1 | exon | 53671557 | 53671604 | 53671557 | ID=Msa1200770-mRNA-1:exon:17136;Parent=Msa1200770-mRNA-1 |
| chr8_1 | exon | 53671800 | 53672392 | 53671800 | ID=Msa1200770-mRNA-1:exon:17137;Parent=Msa1200770-mRNA-1 |
| chr8_1 | five_prime_UTR | 53668629 | 53668890 | 53668629 | ID=Msa1200770-mRNA-1:five_prime_utr;Parent=Msa1200770-mRNA-1 |
| chr8_1 | CDS | 53668891 | 53669073 | 53668891 | ID=Msa1200770-mRNA-1:cds;Parent=Msa1200770-mRNA-1 |
| chr8_1 | CDS | 53669969 | 53670754 | 53669969 | ID=Msa1200770-mRNA-1:cds;Parent=Msa1200770-mRNA-1 |
| chr8_1 | CDS | 53671557 | 53671604 | 53671557 | ID=Msa1200770-mRNA-1:cds;Parent=Msa1200770-mRNA-1 |
| chr8_1 | CDS | 53671800 | 53672120 | 53671800 | ID=Msa1200770-mRNA-1:cds;Parent=Msa1200770-mRNA-1 |
| chr8_1 | three_prime_UTR | 53672121 | 53672392 | 53672121 | ID=Msa1200770-mRNA-1:three_prime_utr;Parent=Msa1200770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
