AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1201870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1201870 MtrunA17_Chr8g0372121 83.434 332 8 4 1 306 1 311 0.0 547
Msa1201870 MtrunA17_Chr5g0405211 57.983 357 88 11 2 305 4 351 4.13e-120 348
Msa1201870 MtrunA17_Chr4g0018391 47.678 323 104 10 4 271 5 317 2.35e-86 262
Msa1201870 MtrunA17_Chr4g0056541 48.718 312 92 10 4 261 5 302 4.82e-83 254
Msa1201870 MtrunA17_Chr5g0398971 47.115 312 110 11 4 269 5 307 8.60e-77 238
Msa1201870 MtrunA17_Chr1g0200561 41.983 343 136 9 2 290 15 348 2.87e-76 237
Msa1201870 MtrunA17_Chr8g0346001 37.822 349 130 8 3 274 12 350 1.67e-64 209
Msa1201870 MtrunA17_Chr2g0309331 42.295 305 109 10 3 257 7 294 1.24e-62 201
Msa1201870 MtrunA17_Chr4g0017921 63.576 151 30 2 6 131 8 158 1.04e-61 199
Msa1201870 MtrunA17_Chr2g0309891 49.102 167 57 3 1 139 1 167 2.04e-52 175
Msa1201870 MtrunA17_Chr3g0109821 43.850 187 71 3 1 153 1 187 6.40e-51 178
Msa1201870 MtrunA17_Chr5g0433781 44.086 186 71 3 1 159 1 180 1.73e-49 174
Msa1201870 MtrunA17_Chr6g0481091 49.669 151 49 2 6 129 6 156 2.18e-49 164
Msa1201870 MtrunA17_Chr3g0091921 51.948 154 47 2 6 132 16 169 2.60e-49 166
Msa1201870 MtrunA17_Chr4g0060931 48.701 154 52 2 6 132 17 170 2.62e-48 165
Msa1201870 MtrunA17_Chr6g0484441 46.795 156 60 2 2 134 1 156 2.19e-47 161
Msa1201870 MtrunA17_Chr6g0453451 49.673 153 50 2 6 131 20 172 6.05e-47 160
Msa1201870 MtrunA17_Chr7g0253011 48.750 160 51 3 6 134 17 176 3.02e-46 160
Msa1201870 MtrunA17_Chr1g0183741 43.646 181 76 4 4 161 8 185 3.95e-46 157
Msa1201870 MtrunA17_Chr2g0312321 44.751 181 69 5 1 155 6 181 6.91e-46 157
Msa1201870 MtrunA17_Chr5g0417791 44.068 177 69 3 6 152 3 179 1.77e-45 154
Msa1201870 MtrunA17_Chr6g0461661 47.826 161 55 3 6 137 18 178 2.96e-44 155
Msa1201870 MtrunA17_Chr2g0316971 46.795 156 54 3 6 132 23 178 5.11e-44 154
Msa1201870 MtrunA17_Chr8g0361731 40.513 195 78 5 2 159 10 203 5.61e-44 154
Msa1201870 MtrunA17_Chr3g0130101 35.662 272 135 7 8 244 9 275 6.15e-44 153
Msa1201870 MtrunA17_Chr5g0400461 48.125 160 52 4 1 129 1 160 7.40e-44 152
Msa1201870 MtrunA17_Chr4g0042561 46.104 154 54 2 6 130 9 162 1.19e-43 150
Msa1201870 MtrunA17_Chr7g0214071 46.497 157 62 3 6 140 15 171 1.52e-43 149
Msa1201870 MtrunA17_Chr3g0139331 45.806 155 59 3 3 132 8 162 2.22e-43 152
Msa1201870 MtrunA17_Chr7g0252971 41.040 173 64 3 3 137 5 177 2.89e-43 151
Msa1201870 MtrunA17_Chr5g0417001 42.941 170 62 3 2 136 10 179 2.95e-43 152
Msa1201870 MtrunA17_Chr1g0147421 45.570 158 60 4 3 134 24 181 3.27e-43 151
Msa1201870 MtrunA17_Chr4g0054791 47.170 159 54 3 1 129 1 159 7.30e-43 149
Msa1201870 MtrunA17_Chr7g0261411 48.980 147 52 3 4 127 8 154 1.06e-42 148
Msa1201870 MtrunA17_Chr2g0318081 44.654 159 63 2 1 134 11 169 1.99e-42 149
Msa1201870 MtrunA17_Chr8g0384721 45.570 158 56 3 6 134 7 163 2.47e-42 147
Msa1201870 MtrunA17_Chr6g0453131 40.426 188 71 5 8 154 17 204 5.39e-42 149
Msa1201870 MtrunA17_Chr3g0130731 44.586 157 58 3 6 134 7 162 6.73e-42 146
Msa1201870 MtrunA17_Chr3g0124761 45.223 157 57 3 6 134 7 162 9.02e-42 146
Msa1201870 MtrunA17_Chr7g0217721 55.645 124 39 1 9 116 22 145 1.53e-41 147
Msa1201870 MtrunA17_Chr3g0144271 53.676 136 44 3 3 119 20 155 3.09e-41 148
Msa1201870 MtrunA17_Chr5g0428991 45.625 160 60 2 6 138 25 184 8.84e-41 149
Msa1201870 MtrunA17_Chr8g0359921 44.872 156 59 2 6 134 14 169 1.37e-40 144
Msa1201870 MtrunA17_Chr2g0318101 42.424 165 57 3 6 132 15 179 2.22e-40 144
Msa1201870 MtrunA17_Chr8g0364791 45.333 150 55 2 8 130 8 157 4.22e-40 145
Msa1201870 MtrunA17_Chr3g0128111 45.946 148 53 2 9 129 45 192 5.20e-40 140
Msa1201870 MtrunA17_Chr7g0217711 54.032 124 41 1 9 116 22 145 7.28e-40 137
Msa1201870 MtrunA17_Chr1g0197351 41.040 173 68 3 4 143 40 211 2.06e-39 144
Msa1201870 MtrunA17_Chr3g0128151 47.020 151 53 2 6 129 22 172 2.48e-39 145
Msa1201870 MtrunA17_Chr4g0047841 39.548 177 57 3 6 132 15 191 6.50e-39 140
Msa1201870 MtrunA17_Chr5g0442771 34.351 262 123 7 6 218 18 279 1.33e-38 138
Msa1201870 MtrunA17_Chr7g0263931 43.478 161 60 3 6 135 11 171 1.45e-38 138
Msa1201870 MtrunA17_Chr1g0201021 48.462 130 49 1 8 119 21 150 1.72e-38 142
Msa1201870 MtrunA17_Chr8g0384201 43.333 150 58 2 8 130 8 157 1.44e-37 139
Msa1201870 MtrunA17_Chr2g0311651 41.420 169 57 4 6 132 21 189 2.10e-37 135
Msa1201870 MtrunA17_Chr2g0326361 40.476 168 69 3 7 143 15 182 2.28e-37 135
Msa1201870 MtrunA17_Chr2g0311661 40.828 169 58 4 6 132 20 188 1.58e-36 132
Msa1201870 MtrunA17_Chr1g0197361 37.173 191 91 5 8 171 10 198 1.14e-35 135
Msa1201870 MtrunA17_Chr3g0092671 36.232 207 101 6 8 184 7 212 4.27e-35 133
Msa1201870 MtrunA17_Chr4g0038751 42.949 156 66 3 3 135 12 167 6.25e-35 128
Msa1201870 MtrunA17_Chr4g0076731 44.966 149 58 5 5 129 53 201 1.94e-34 130
Msa1201870 MtrunA17_Chr8g0385991 40.127 157 64 3 6 132 14 170 2.38e-33 122
Msa1201870 MtrunA17_Chr3g0131911 41.875 160 60 5 6 132 14 173 2.20e-32 120
Msa1201870 MtrunA17_Chr3g0113001 52.041 98 35 2 51 136 26 123 2.47e-29 113
Msa1201870 MtrunA17_Chr3g0113031 51.515 99 35 2 51 136 1 99 2.68e-29 112
Msa1201870 MtrunA17_Chr4g0026141 44.444 135 53 4 2 114 1 135 5.77e-28 108
Msa1201870 MtrunA17_Chr8g0345671 41.379 145 59 5 6 125 11 154 2.71e-27 109
Msa1201870 MtrunA17_Chr4g0050701 36.242 149 70 3 6 129 11 159 3.08e-27 105
Msa1201870 MtrunA17_Chr8g0345691 42.069 145 58 5 6 125 12 155 1.47e-26 108
Msa1201870 MtrunA17_Chr8g0345711 35.714 168 66 5 1 127 7 173 4.00e-26 101
Msa1201870 MtrunA17_Chr2g0321631 43.939 132 49 5 7 114 5 135 4.10e-26 103
Msa1201870 MtrunA17_Chr2g0321741 32.911 158 82 3 26 159 12 169 1.54e-25 104
Msa1201870 MtrunA17_Chr7g0266701 32.335 167 76 5 6 135 4 170 9.43e-22 92.0
Msa1201870 MtrunA17_Chr8g0345731 37.879 132 59 4 6 114 24 155 4.80e-20 85.5
Msa1201870 MtrunA17_Chr7g0243371 48.529 68 33 1 52 117 26 93 5.07e-18 78.6
Msa1201870 MtrunA17_Chr8g0384351 35.507 138 68 5 6 130 10 139 1.16e-17 79.3
Msa1201870 MtrunA17_Chr8g0345721 32.948 173 60 5 2 119 26 197 1.50e-17 79.7
Msa1201870 MtrunA17_Chr8g0345741 36.923 130 60 4 19 127 4 132 4.92e-17 77.0
Msa1201870 MtrunA17_Chr8g0345701 33.562 146 59 6 4 114 5 147 1.65e-15 73.2
Msa1201870 MtrunA17_Chr3g0130321 30.400 125 69 4 6 115 7 128 2.45e-12 65.1
Msa1201870 MtrunA17_Chr7g0251651 30.597 134 65 4 6 117 18 145 2.43e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1201870 AT2G18060.3 52.044 367 109 11 2 306 4 365 1.98e-116 340
Msa1201870 AT2G18060.1 52.044 367 109 11 2 306 4 365 1.98e-116 340
Msa1201870 AT4G36160.2 57.929 309 78 10 3 262 10 315 6.89e-109 322
Msa1201870 AT4G36160.1 57.929 309 78 10 3 262 6 311 7.06e-109 321
Msa1201870 AT4G36160.3 57.929 309 78 10 3 262 6 311 7.06e-109 321
Msa1201870 AT5G66300.1 51.852 297 92 10 4 262 9 292 4.84e-89 268
Msa1201870 AT1G12260.1 46.921 341 97 11 4 262 5 343 1.29e-81 252
Msa1201870 AT1G12260.2 48.693 306 104 8 4 269 5 297 2.74e-78 242
Msa1201870 AT1G62700.1 45.210 334 100 10 4 262 5 330 8.21e-76 237
Msa1201870 AT1G62700.2 45.210 334 100 10 4 262 5 330 8.21e-76 237
Msa1201870 AT5G62380.2 43.322 307 137 6 2 272 1 306 4.87e-74 231
Msa1201870 AT5G62380.1 43.322 307 137 6 2 272 1 306 4.87e-74 231
Msa1201870 AT2G18060.2 46.996 283 101 10 67 306 1 277 7.47e-73 226
Msa1201870 AT1G71930.2 44.211 285 122 5 1 258 4 278 2.20e-70 221
Msa1201870 AT1G71930.1 44.211 285 122 5 1 258 4 278 2.20e-70 221
Msa1201870 AT2G46770.1 42.105 304 103 7 3 259 13 290 2.66e-63 204
Msa1201870 AT1G32770.1 41.176 306 122 7 3 263 13 305 4.14e-62 201
Msa1201870 AT1G33280.1 61.589 151 33 2 6 131 8 158 2.76e-60 194
Msa1201870 AT3G61910.1 39.597 298 109 6 3 259 8 275 1.29e-59 194
Msa1201870 AT4G10350.1 59.740 154 34 2 6 131 9 162 2.32e-59 193
Msa1201870 AT1G79580.3 59.615 156 37 3 6 135 17 172 1.31e-57 190
Msa1201870 AT1G79580.5 59.615 156 37 3 6 135 17 172 1.31e-57 190
Msa1201870 AT1G79580.4 59.615 156 37 3 6 135 17 172 1.31e-57 190
Msa1201870 AT1G79580.2 59.615 156 37 3 6 135 17 172 1.31e-57 190
Msa1201870 AT1G79580.1 59.615 156 37 3 6 135 17 172 1.31e-57 190
Msa1201870 AT3G18400.1 49.682 157 55 2 2 134 1 157 2.20e-50 169
Msa1201870 AT3G17730.1 44.149 188 74 3 1 161 1 184 2.48e-50 167
Msa1201870 AT1G65910.1 49.359 156 52 2 1 129 1 156 4.93e-49 172
Msa1201870 AT5G61430.1 50.993 151 47 2 6 129 16 166 1.81e-48 165
Msa1201870 AT5G39610.1 50.327 153 49 2 6 131 20 172 6.81e-48 162
Msa1201870 AT5G07680.2 49.669 151 49 2 6 129 3 153 2.64e-47 161
Msa1201870 AT5G07680.1 49.669 151 49 2 6 129 17 167 3.79e-47 161
Msa1201870 AT5G17260.1 47.134 157 55 2 1 129 1 157 4.46e-47 165
Msa1201870 AT3G03200.1 49.045 157 52 3 1 129 1 157 5.92e-47 164
Msa1201870 AT1G54330.1 49.045 157 56 2 1 133 1 157 7.16e-47 160
Msa1201870 AT2G24430.2 49.020 153 52 3 3 129 13 165 8.03e-47 160
Msa1201870 AT2G24430.1 49.020 153 52 3 3 129 13 165 8.03e-47 160
Msa1201870 AT5G46590.1 48.521 169 55 5 1 140 1 166 3.06e-46 158
Msa1201870 AT3G29035.1 56.693 127 39 1 6 116 24 150 4.99e-46 158
Msa1201870 AT5G46590.2 55.224 134 41 2 1 115 1 134 7.34e-46 157
Msa1201870 AT1G76420.1 50.980 153 49 3 3 129 19 171 1.01e-45 158
Msa1201870 AT1G56010.2 43.548 186 69 6 1 155 14 194 5.80e-45 155
Msa1201870 AT5G18270.2 48.026 152 51 3 6 129 21 172 1.62e-44 154
Msa1201870 AT5G18270.1 48.026 152 51 3 6 129 21 172 2.13e-44 154
Msa1201870 AT4G17980.1 52.593 135 44 2 1 115 1 135 2.18e-44 152
Msa1201870 AT3G15170.1 48.485 165 56 4 3 138 17 181 2.85e-44 153
Msa1201870 AT3G10490.2 38.889 216 101 6 2 188 23 236 3.08e-44 157
Msa1201870 AT3G10490.1 39.252 214 99 6 2 186 23 234 3.29e-44 151
Msa1201870 AT4G17980.2 52.593 135 44 2 1 115 1 135 3.51e-44 152
Msa1201870 AT3G04060.1 42.246 187 67 4 6 164 20 193 3.76e-44 154
Msa1201870 AT3G12977.1 44.937 158 61 2 1 132 13 170 5.70e-44 152
Msa1201870 AT1G69490.1 43.396 159 61 2 3 132 6 164 2.07e-43 150
Msa1201870 AT3G10480.2 44.311 167 65 4 4 143 25 190 2.36e-43 154
Msa1201870 AT3G10480.1 44.048 168 65 4 4 143 25 191 3.18e-43 154
Msa1201870 AT1G77450.1 45.342 161 59 3 7 139 11 170 1.13e-42 147
Msa1201870 AT5G53950.1 47.097 155 53 3 6 131 17 171 1.65e-42 150
Msa1201870 AT2G33480.2 46.939 147 58 2 6 132 15 161 1.84e-42 147
Msa1201870 AT5G24590.2 49.367 158 52 4 6 135 13 170 2.53e-42 151
Msa1201870 AT2G33480.1 46.309 149 58 2 6 132 15 163 3.63e-42 147
Msa1201870 AT5G13180.1 47.973 148 54 3 6 130 14 161 4.61e-42 146
Msa1201870 AT3G15500.1 43.210 162 67 2 1 137 9 170 1.64e-41 146
Msa1201870 AT1G01720.1 35.472 265 122 9 6 235 7 257 2.15e-41 145
Msa1201870 AT4G27410.2 43.396 159 65 2 1 134 9 167 2.70e-41 145
Msa1201870 AT5G04410.1 41.618 173 73 3 4 149 7 178 2.77e-41 150
Msa1201870 AT2G43000.1 45.513 156 59 2 8 137 20 175 5.52e-41 144
Msa1201870 AT3G04070.2 42.945 163 56 3 4 129 8 170 7.67e-41 145
Msa1201870 AT5G08790.1 44.654 159 57 3 6 134 7 164 9.08e-41 143
Msa1201870 AT5G63790.2 44.025 159 58 3 6 134 60 217 1.68e-40 144
Msa1201870 AT1G26870.1 40.351 171 66 3 2 136 12 182 1.78e-40 146
Msa1201870 AT5G63790.1 44.025 159 58 3 6 134 50 207 1.89e-40 143
Msa1201870 AT1G33060.1 40.212 189 75 4 5 162 23 204 2.31e-40 149
Msa1201870 AT1G33060.2 40.212 189 75 4 5 162 23 204 2.37e-40 149
Msa1201870 AT5G39820.1 38.462 182 64 3 3 136 17 198 2.59e-40 144
Msa1201870 AT3G49530.2 42.424 165 67 3 6 142 13 177 4.50e-40 145
Msa1201870 AT1G52890.1 41.975 162 69 2 1 137 9 170 5.37e-40 142
Msa1201870 AT3G10500.1 42.949 156 62 2 4 132 7 162 8.78e-40 146
Msa1201870 AT4G35580.1 48.387 155 52 4 2 129 6 159 9.40e-40 145
Msa1201870 AT1G61110.1 42.775 173 60 4 6 140 16 187 1.02e-39 142
Msa1201870 AT3G49530.1 42.424 165 67 3 6 142 13 177 1.08e-39 145
Msa1201870 AT4G35580.2 48.387 155 52 4 2 129 6 159 1.11e-39 146
Msa1201870 AT4G35580.3 48.387 155 52 4 2 129 6 159 1.12e-39 146
Msa1201870 AT4G28530.1 46.951 164 46 6 6 129 10 172 2.30e-39 141
Msa1201870 AT3G04070.1 48.872 133 47 2 4 115 8 140 4.98e-39 141
Msa1201870 AT4G27410.3 39.205 176 65 2 1 134 9 184 1.63e-38 138
Msa1201870 AT1G32510.1 40.116 172 68 4 1 137 1 172 5.33e-38 136
Msa1201870 AT3G10480.3 37.186 199 63 4 6 143 27 224 1.05e-37 140
Msa1201870 AT2G27300.1 38.788 165 81 3 4 149 12 175 1.71e-37 136
Msa1201870 AT5G09330.5 42.308 156 63 2 1 129 1 156 3.16e-37 139
Msa1201870 AT5G09330.2 42.308 156 63 2 1 129 1 156 3.16e-37 139
Msa1201870 AT5G09330.4 42.308 156 63 2 1 129 1 156 3.16e-37 139
Msa1201870 AT5G09330.3 42.308 156 63 2 1 129 1 156 3.16e-37 139
Msa1201870 AT5G09330.1 42.308 156 63 2 1 129 1 156 3.16e-37 139
Msa1201870 AT1G34180.3 43.846 130 55 1 8 119 18 147 3.49e-37 137
Msa1201870 AT4G10350.2 70.455 88 17 1 52 130 27 114 4.61e-37 134
Msa1201870 AT1G34180.1 43.846 130 55 1 8 119 18 147 1.13e-36 138
Msa1201870 AT5G64060.1 41.667 156 64 2 1 129 1 156 2.77e-36 133
Msa1201870 AT5G22290.1 42.000 150 67 2 1 130 16 165 5.85e-36 132
Msa1201870 AT3G15510.1 39.053 169 65 3 10 140 21 189 9.54e-36 132
Msa1201870 AT3G12910.1 42.442 172 56 5 8 137 23 193 1.14e-35 130
Msa1201870 AT1G34190.1 43.077 130 56 1 8 119 18 147 1.71e-35 134
Msa1201870 AT1G34180.4 40.141 142 55 1 8 119 18 159 1.98e-35 133
Msa1201870 AT2G17040.1 36.041 197 94 4 8 172 8 204 3.69e-35 129
Msa1201870 AT1G34180.2 40.141 142 55 1 8 119 18 159 4.88e-35 134
Msa1201870 AT2G02450.1 43.624 149 60 4 5 129 50 198 9.08e-35 130
Msa1201870 AT2G02450.2 43.624 149 60 4 5 129 50 198 9.11e-35 130
Msa1201870 AT3G44290.2 38.816 152 73 3 8 140 16 166 1.18e-34 126
Msa1201870 AT3G44290.1 38.816 152 73 3 8 140 16 166 4.44e-34 127
Msa1201870 AT5G61430.2 57.778 90 27 1 51 129 14 103 2.80e-32 121
Msa1201870 AT1G52880.1 39.634 164 62 3 10 136 21 184 2.03e-31 120
Msa1201870 AT1G56010.1 47.863 117 44 3 52 155 15 127 2.09e-31 118
Msa1201870 AT5G04395.1 40.123 162 64 3 3 131 25 186 3.05e-31 115
Msa1201870 AT3G12977.2 52.747 91 33 1 52 132 27 117 7.09e-30 113
Msa1201870 AT1G32870.1 41.558 154 63 3 6 132 10 163 1.77e-29 117
Msa1201870 AT1G32870.2 41.558 154 63 3 6 132 10 163 2.09e-29 117
Msa1201870 AT1G32870.3 41.558 154 63 3 6 132 46 199 2.67e-29 117
Msa1201870 AT2G33480.3 47.778 90 38 1 52 132 17 106 2.89e-25 100
Msa1201870 AT3G10490.4 37.226 137 73 5 63 188 2 136 2.85e-21 92.8
Msa1201870 AT3G10490.3 37.226 137 73 5 63 188 2 136 2.85e-21 92.8
Msa1201870 AT2G43000.2 43.299 97 45 1 51 137 1 97 8.21e-21 88.6
Msa1201870 AT5G64530.1 39.167 120 59 3 6 115 3 118 1.55e-20 87.4
Msa1201870 AT5G64530.2 39.167 120 59 3 6 115 3 118 2.42e-20 86.3
Msa1201870 AT5G22380.1 37.037 135 62 3 2 113 1 135 5.50e-20 87.4
Msa1201870 AT3G44350.1 33.987 153 74 5 9 134 8 160 9.10e-20 84.7
Msa1201870 AT3G44350.2 35.156 128 61 3 9 114 8 135 1.41e-19 86.3
Msa1201870 AT4G01550.1 26.641 259 145 10 9 233 7 254 6.05e-18 84.3
Msa1201870 AT4G01520.1 29.319 191 106 6 7 170 5 193 6.57e-18 82.8
Msa1201870 AT4G28530.2 40.310 129 41 5 6 99 10 137 7.00e-18 82.8
Msa1201870 AT4G01540.1 29.500 200 104 7 1 170 1 193 9.34e-18 83.6
Msa1201870 AT4G01540.3 29.500 200 104 7 1 170 1 193 9.88e-18 83.6
Msa1201870 AT4G01540.2 29.500 200 104 7 1 170 1 193 1.02e-17 83.6
Msa1201870 AT4G01540.4 29.500 200 104 7 1 170 1 193 1.13e-17 83.2
Msa1201870 AT1G02250.1 38.462 130 54 5 7 113 4 130 3.66e-17 81.3
Msa1201870 AT1G02230.1 40.000 130 52 6 7 113 4 130 5.52e-17 80.9
Msa1201870 AT3G04420.2 34.375 128 62 3 7 113 4 130 9.93e-17 79.3
Msa1201870 AT3G04420.1 34.375 128 62 3 7 113 4 130 2.16e-16 79.0
Msa1201870 AT5G50820.1 37.500 128 56 4 6 115 17 138 3.15e-16 75.9
Msa1201870 AT1G01010.1 32.653 147 69 6 9 125 6 152 3.58e-16 79.0
Msa1201870 AT5G22290.2 46.154 65 32 1 69 130 2 66 7.16e-15 73.2
Msa1201870 AT1G02220.1 33.333 129 61 4 6 113 3 127 9.03e-14 71.6
Msa1201870 AT3G56530.1 28.358 134 77 3 5 119 51 184 3.88e-11 63.2

Find 67 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAATAATGAATTTCAAAA+TGG 0.248762 8_1:-55140056 Msa1201870:CDS
AAGCACTCTTATAGTGAAAA+AGG 0.269311 8_1:+55143529 None:intergenic
TTGTTATGTTCTGATATTAT+TGG 0.276778 8_1:+55140074 None:intergenic
GAGCTACAATGGCAGGGTTC+TGG 0.317074 8_1:-55142536 Msa1201870:CDS
TGATGAAGAAAGTGTATTAA+TGG 0.361903 8_1:-55143346 Msa1201870:five_prime_UTR
GACTCCATCATAGAAATATA+TGG 0.383595 8_1:+55143293 None:intergenic
ATTGGATCATGCATGAATAT+AGG 0.391373 8_1:-55142407 Msa1201870:CDS
TCCCTTGCAGGAAGAAGGTT+GGG 0.394830 8_1:-55140387 Msa1201870:intron
AAAGAGAGAAAGTGACTGAT+TGG 0.431747 8_1:-55140010 Msa1201870:CDS
CATGTGTCCCACCTGGATTT+CGG 0.432093 8_1:-55143271 Msa1201870:CDS
GTTCCTACTTCAAAGTAGTA+AGG 0.437560 8_1:-55139910 Msa1201870:CDS
CCAACGGATGGAGAGCTTGT+TGG 0.439284 8_1:-55143242 Msa1201870:CDS
AAAGATAAGAAATATCCAAC+AGG 0.439866 8_1:-55142573 Msa1201870:intron
AGTTGAGTCAAGAAGATCAT+AGG 0.449602 8_1:-55139959 Msa1201870:CDS
GAGGGATCTTGACAAGTTTG+TGG 0.454746 8_1:-55139988 Msa1201870:CDS
TATGAACGAACAAAACTGAT+TGG 0.456318 8_1:-55142486 Msa1201870:CDS
CATCCTTACTACTTTGAAGT+AGG 0.458330 8_1:+55139907 None:intergenic
ACGAATAGAGCTACAATGGC+AGG 0.459411 8_1:-55142543 Msa1201870:CDS
CTTCATGCATTCAGAACAAA+TGG 0.460408 8_1:-55140150 Msa1201870:CDS
AGTGTTCCCTTGCAGGAAGA+AGG 0.464909 8_1:-55140392 Msa1201870:intron
TGTCTTAAGATGAGGTCAAT+GGG 0.475675 8_1:+55140251 None:intergenic
ATACACCGACTTATCTCTTC+CGG 0.477433 8_1:+55142506 None:intergenic
AATACCATATATTTCTATGA+TGG 0.480060 8_1:-55143297 Msa1201870:exon
CTATTCGTTCTCGTCCCTGT+TGG 0.488529 8_1:+55142558 None:intergenic
TACAAAGGAAGAGCACCTAA+TGG 0.488869 8_1:-55142441 Msa1201870:CDS
CTAATGGACAGAAAACTGAT+TGG 0.497399 8_1:-55142425 Msa1201870:CDS
GCAGGGTTCTGGAAAGCAAC+CGG 0.508647 8_1:-55142525 Msa1201870:CDS
GTTGGGTGGAACCGAAATCC+AGG 0.510577 8_1:+55143260 None:intergenic
TTCCCTTGCAGGAAGAAGGT+TGG 0.510912 8_1:-55140388 Msa1201870:intron
ACAAATGAAAGATGGGATCC+AGG 0.514083 8_1:-55140320 Msa1201870:CDS
TTGTCTTAAGATGAGGTCAA+TGG 0.515328 8_1:+55140250 None:intergenic
GGTGAGAGATAAAGAGTGTG+AGG 0.518897 8_1:+55143429 None:intergenic
CAACAAGCTCTCCATCCGTT+GGG 0.524228 8_1:+55143243 None:intergenic
GAGAGAAAGTGACTGATTGG+AGG 0.524381 8_1:-55140007 Msa1201870:CDS
TAATATACCTTGGAGATCCC+AGG 0.527193 8_1:+55143139 None:intergenic
ATCTATACCGTATTGAACCC+TGG 0.527609 8_1:-55143157 Msa1201870:CDS
TCTATACCGTATTGAACCCT+GGG 0.534125 8_1:-55143156 Msa1201870:CDS
AATGGGGTCCACCCTTGAGA+TGG 0.540085 8_1:+55140268 None:intergenic
TTTCGGTTCCACCCAACGGA+TGG 0.543349 8_1:-55143254 Msa1201870:CDS
CCAACAAGCTCTCCATCCGT+TGG 0.549429 8_1:+55143242 None:intergenic
GGACTTTCTAGCTGAGGAAG+AGG 0.549801 8_1:+55140125 None:intergenic
AAACAAGTAGCACCATCTCA+AGG 0.557359 8_1:-55140280 Msa1201870:CDS
ACAAGGTCAGATTGTGACAT+TGG 0.564455 8_1:-55139852 Msa1201870:CDS
TGTTCATCATATAAGTGACC+TGG 0.567839 8_1:+55140302 None:intergenic
AAAGTCCCTCTTTAACAAAG+AGG 0.569473 8_1:-55140109 Msa1201870:CDS
GTGTGAATATGTATGTAGAT+AGG 0.571059 8_1:+55143408 None:intergenic
ATGGAGTCATGTGTCCCACC+TGG 0.583453 8_1:-55143278 Msa1201870:CDS
AGAGAAAGTGACTGATTGGA+GGG 0.585369 8_1:-55140006 Msa1201870:CDS
GAACAAAACTGATTGGAATG+AGG 0.589039 8_1:-55142479 Msa1201870:CDS
TCTGTGGTTGTCTTAAGATG+AGG 0.591566 8_1:+55140243 None:intergenic
TGGATTTCGGTTCCACCCAA+CGG 0.599891 8_1:-55143258 Msa1201870:CDS
GGAGATCCCAGGGTTCAATA+CGG 0.603085 8_1:+55143150 None:intergenic
AAAGAGGGACTTTCTAGCTG+AGG 0.604723 8_1:+55140119 None:intergenic
CAAGCTCTCCATCCGTTGGG+TGG 0.610660 8_1:+55143246 None:intergenic
AACAAGTAGCACCATCTCAA+GGG 0.618907 8_1:-55140279 Msa1201870:CDS
AATATACCTTGGAGATCCCA+GGG 0.622309 8_1:+55143140 None:intergenic
AGCAACCGGAAGAGATAAGT+CGG 0.630743 8_1:-55142511 Msa1201870:CDS
ATTGAACCCTGGGATCTCCA+AGG 0.636482 8_1:-55143146 Msa1201870:intron
AAGAAAGTGTATTAATGGTG+TGG 0.642690 8_1:-55143341 Msa1201870:five_prime_UTR
CGAATAGAGCTACAATGGCA+GGG 0.643373 8_1:-55142542 Msa1201870:CDS
GAGAACGAATAGAGCTACAA+TGG 0.650530 8_1:-55142547 Msa1201870:CDS
AAAGTGTATTAATGGTGTGG+TGG 0.662263 8_1:-55143338 Msa1201870:five_prime_UTR
AAGTAGCACCATCTCAAGGG+TGG 0.666198 8_1:-55140276 Msa1201870:CDS
GGGTGGAACCGAAATCCAGG+TGG 0.677530 8_1:+55143263 None:intergenic
GTCTTAAGATGAGGTCAATG+GGG 0.688746 8_1:+55140252 None:intergenic
GGTGGAACCGAAATCCAGGT+GGG 0.699498 8_1:+55143264 None:intergenic
AAGATAAGAAATATCCAACA+GGG 0.735024 8_1:-55142572 Msa1201870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATTATTTTATTTTATAT+AGG + chr8_1:55141785-55141804 None:intergenic 0.0%
!!! TTATTATTATTTCTTTTTGT+TGG - chr8_1:55139859-55139878 Msa1201870:CDS 10.0%
!! TATTTAATTAATTAATCAAG+GGG + chr8_1:55141099-55141118 None:intergenic 10.0%
!!! CATTAAAAAAAATCTAATTT+TGG - chr8_1:55142019-55142038 Msa1201870:intron 10.0%
!! AAATGAATAAAAATAAAAGA+AGG + chr8_1:55142073-55142092 None:intergenic 10.0%
!!! TTGTTTAAAACTTTTTAAAT+TGG + chr8_1:55142346-55142365 None:intergenic 10.0%
!!! AATTATCATAAGTTTTTTTT+TGG - chr8_1:55142808-55142827 Msa1201870:intron 10.0%
!! AGAAAAAAATTTAATTCAAA+AGG - chr8_1:55142879-55142898 Msa1201870:intron 10.0%
!! AAAAAAAGTTGAAATATTGA+CGG - chr8_1:55140436-55140455 Msa1201870:intron 15.0%
!!! AAAAGTATACATATATTGAT+AGG - chr8_1:55140695-55140714 Msa1201870:intron 15.0%
!!! CATCATTAGTTTTATTTTTT+AGG - chr8_1:55141550-55141569 Msa1201870:intron 15.0%
!!! TCAACTAAAATGTTTTATTA+TGG - chr8_1:55141634-55141653 Msa1201870:intron 15.0%
!! TCTCTTAAATGTTAATTATT+TGG - chr8_1:55141815-55141834 Msa1201870:intron 15.0%
!!! AAAAAAATGGTTTTTTTTCT+AGG + chr8_1:55141845-55141864 None:intergenic 15.0%
!! ACACAATATATGTAAAAAAA+TGG + chr8_1:55141858-55141877 None:intergenic 15.0%
!!! ATTTTTATTCATTTTAAGGA+TGG - chr8_1:55142079-55142098 Msa1201870:intron 15.0%
!! TAAGTCAAATAAAATACAAT+CGG + chr8_1:55142136-55142155 None:intergenic 15.0%
!! ATTGTGTTAAATTTATCAAT+AGG - chr8_1:55142388-55142407 Msa1201870:intron 15.0%
!! AACAAATACATTAATTAGTT+TGG + chr8_1:55142513-55142532 None:intergenic 15.0%
!!! GTGTTAATAACTTTATTTAA+CGG - chr8_1:55142554-55142573 Msa1201870:CDS 15.0%
!! TTATTTAAAGGTGAATATTT+CGG - chr8_1:55142711-55142730 Msa1201870:intron 15.0%
!!! TTTATGTTCTAGTAATTTTT+TGG + chr8_1:55142850-55142869 None:intergenic 15.0%
!! AACAATAATGAATTTCAAAA+TGG - chr8_1:55143308-55143327 Msa1201870:five_prime_UTR 15.0%
!!! AATACCATATATTTCTATGA+TGG - chr8_1:55140067-55140086 Msa1201870:CDS 20.0%
!! GTAATATAAGTAATATACCT+TGG + chr8_1:55140238-55140257 None:intergenic 20.0%
!! TTTAAACAAGAACACAAAAT+AGG + chr8_1:55140678-55140697 None:intergenic 20.0%
!! TTATAGAAGTCTTGATTTAA+AGG - chr8_1:55141216-55141235 Msa1201870:intron 20.0%
!! TATAGAAGTCTTGATTTAAA+GGG - chr8_1:55141217-55141236 Msa1201870:intron 20.0%
!! AATACTATAAAGTACAACTT+TGG - chr8_1:55141344-55141363 Msa1201870:intron 20.0%
!! TTACGAATATTGTTAATTAG+TGG + chr8_1:55141374-55141393 None:intergenic 20.0%
!!! ATCATCTTTCTTTTACTTTT+TGG - chr8_1:55141500-55141519 Msa1201870:intron 20.0%
!!! CTAAAATGTTTTATTATGGA+TGG - chr8_1:55141638-55141657 Msa1201870:intron 20.0%
!!! GTTGCATTTTTAGTTTTTTA+CGG - chr8_1:55141876-55141895 Msa1201870:intron 20.0%
!!! GGATTGTATTGTATTTTTAT+TGG - chr8_1:55141897-55141916 Msa1201870:intron 20.0%
!! AAACTTTGCAAAAGTTAAAA+GGG - chr8_1:55142199-55142218 Msa1201870:intron 20.0%
!! AAAGACAATAATTGATTAAG+TGG + chr8_1:55142460-55142479 None:intergenic 20.0%
!! TATTTAAAGGTGAATATTTC+GGG - chr8_1:55142712-55142731 Msa1201870:intron 20.0%
!! AACCCGAATTTAAATTAATT+CGG - chr8_1:55142737-55142756 Msa1201870:intron 20.0%
!! AACCCGAATTAATTTAAATT+CGG + chr8_1:55142743-55142762 None:intergenic 20.0%
!! TTGTTATGTTCTGATATTAT+TGG + chr8_1:55143293-55143312 None:intergenic 20.0%
!! TGATGAAGAAAGTGTATTAA+TGG - chr8_1:55140018-55140037 Msa1201870:CDS 25.0%
!! TATTTTATGCGTTACTCTAT+AGG + chr8_1:55140602-55140621 None:intergenic 25.0%
! TGTTAAAACCCTAATCAATA+GGG + chr8_1:55140639-55140658 None:intergenic 25.0%
! AAAGATAAGAAATATCCAAC+AGG - chr8_1:55140791-55140810 Msa1201870:intron 25.0%
! AAGATAAGAAATATCCAACA+GGG - chr8_1:55140792-55140811 Msa1201870:intron 25.0%
! TCAACTCAACACATAATATA+TGG + chr8_1:55141038-55141057 None:intergenic 25.0%
! TCAAACTTGATTAGTAACTT+TGG - chr8_1:55141064-55141083 Msa1201870:intron 25.0%
! TTCGTAAATAATATTCACCA+AGG - chr8_1:55141387-55141406 Msa1201870:intron 25.0%
! AATCAGTTGATCTTGATTAA+TGG + chr8_1:55141686-55141705 None:intergenic 25.0%
! AATTCATTCGTTAGAGAATT+AGG + chr8_1:55141749-55141768 None:intergenic 25.0%
!! TTTTATTGGAGTGACAAAAA+AGG - chr8_1:55141911-55141930 Msa1201870:intron 25.0%
! AAAAAACCTTTACCCTTAAA+AGG + chr8_1:55141979-55141998 None:intergenic 25.0%
!! TCATTAGATGATCCTTTTAT+TGG - chr8_1:55142110-55142129 Msa1201870:intron 25.0%
! GAAACTTTGCAAAAGTTAAA+AGG - chr8_1:55142198-55142217 Msa1201870:intron 25.0%
! AACTTTGCAAAAGTTAAAAG+GGG - chr8_1:55142200-55142219 Msa1201870:intron 25.0%
!!! ATGATGTTTTGAATGTGAAA+AGG + chr8_1:55142250-55142269 None:intergenic 25.0%
!! ATTTTAAATATGGAGAAGTG+GGG + chr8_1:55142649-55142668 None:intergenic 25.0%
!! CATTTTAAATATGGAGAAGT+GGG + chr8_1:55142650-55142669 None:intergenic 25.0%
!! ACATTTTAAATATGGAGAAG+TGG + chr8_1:55142651-55142670 None:intergenic 25.0%
!! AAGCTCACACATTTTAAATA+TGG + chr8_1:55142659-55142678 None:intergenic 25.0%
! ACCCGAATTTAAATTAATTC+GGG - chr8_1:55142738-55142757 Msa1201870:intron 25.0%
! ACCCGAATTAATTTAAATTC+GGG + chr8_1:55142742-55142761 None:intergenic 25.0%
!!! ATCTTTCATTTGTTTTTGCT+TGG + chr8_1:55143037-55143056 None:intergenic 25.0%
! AAGCAAAAACAAATGAAAGA+TGG - chr8_1:55143036-55143055 Msa1201870:intron 25.0%
! AGCAAAAACAAATGAAAGAT+GGG - chr8_1:55143037-55143056 Msa1201870:intron 25.0%
!! TGTTTGTACATGAAATTTTG+AGG + chr8_1:55143155-55143174 None:intergenic 25.0%
!!! TAAGCTCATTTTTAACTACA+AGG - chr8_1:55143495-55143514 Msa1201870:five_prime_UTR 25.0%
AAGCACTCTTATAGTGAAAA+AGG + chr8_1:55139838-55139857 None:intergenic 30.0%
AGTGAAGCAAAAAGCTAAAA+AGG + chr8_1:55139893-55139912 None:intergenic 30.0%
GTGTGAATATGTATGTAGAT+AGG + chr8_1:55139959-55139978 None:intergenic 30.0%
! AAGAAAGTGTATTAATGGTG+TGG - chr8_1:55140023-55140042 Msa1201870:CDS 30.0%
GACTCCATCATAGAAATATA+TGG + chr8_1:55140074-55140093 None:intergenic 30.0%
! TTTGATCAACCCTATTGATT+AGG - chr8_1:55140627-55140646 Msa1201870:intron 30.0%
! TTGATCAACCCTATTGATTA+GGG - chr8_1:55140628-55140647 Msa1201870:intron 30.0%
CTGTTAAAACCCTAATCAAT+AGG + chr8_1:55140640-55140659 None:intergenic 30.0%
TATACAGAGAGATGTAGAAT+TGG - chr8_1:55140731-55140750 Msa1201870:intron 30.0%
ATACAGAGAGATGTAGAATT+GGG - chr8_1:55140732-55140751 Msa1201870:intron 30.0%
TATGAACGAACAAAACTGAT+TGG - chr8_1:55140878-55140897 Msa1201870:intron 30.0%
ATTGGATCATGCATGAATAT+AGG - chr8_1:55140957-55140976 Msa1201870:intron 30.0%
TATATGTATATACTTGCCTG+TGG + chr8_1:55141007-55141026 None:intergenic 30.0%
!! CTTGTTTTCTTGTCTGAAAA+AGG + chr8_1:55141150-55141169 None:intergenic 30.0%
!!! CTTTTTCAGACAAGAAAACA+AGG - chr8_1:55141148-55141167 Msa1201870:intron 30.0%
! ACAAGGATGTTTCTATAAGT+TGG - chr8_1:55141165-55141184 Msa1201870:intron 30.0%
GTTTAGTCTAAGCATTTGAT+TGG - chr8_1:55141293-55141312 Msa1201870:intron 30.0%
ACGTTATAAAACGAGTTTAG+AGG + chr8_1:55141321-55141340 None:intergenic 30.0%
AAAAAAGTTTGTACGTACCT+TGG + chr8_1:55141407-55141426 None:intergenic 30.0%
!!! TACGTACAAACTTTTTTGCT+AGG - chr8_1:55141410-55141429 Msa1201870:intron 30.0%
!!! ACGTACAAACTTTTTTGCTA+GGG - chr8_1:55141411-55141430 Msa1201870:intron 30.0%
TATGTGTGTGTATATATGTG+TGG + chr8_1:55141953-55141972 None:intergenic 30.0%
! ACACACATATTGCCTTTTAA+GGG - chr8_1:55141964-55141983 Msa1201870:intron 30.0%
!! ATATTGCCTTTTAAGGGTAA+AGG - chr8_1:55141970-55141989 Msa1201870:intron 30.0%
AAATACAATCGGCCAATAAA+AGG + chr8_1:55142125-55142144 None:intergenic 30.0%
! TTGCAAAGTTTCAGTCTTTT+TGG + chr8_1:55142190-55142209 None:intergenic 30.0%
ACTTTGCAAAAGTTAAAAGG+GGG - chr8_1:55142201-55142220 Msa1201870:intron 30.0%
AGACTTAAATTTAGAGACGA+AGG + chr8_1:55142316-55142335 None:intergenic 30.0%
TGCATAATATATGCAGAAGT+CGG - chr8_1:55142610-55142629 Msa1201870:intron 30.0%
CAAAAGGAGTTTAGAGAAAA+TGG - chr8_1:55142895-55142914 Msa1201870:intron 30.0%
! TTTTGCCTCTTTGTTAAAGA+GGG + chr8_1:55143263-55143282 None:intergenic 30.0%
CACTCTTATAGTGAAAAAGG+TGG + chr8_1:55139835-55139854 None:intergenic 35.0%
AAAGTGTATTAATGGTGTGG+TGG - chr8_1:55140026-55140045 Msa1201870:CDS 35.0%
AACCATGTTCAACATAGTGA+TGG - chr8_1:55140301-55140320 Msa1201870:CDS 35.0%
TACCATCACTATGTTGAACA+TGG + chr8_1:55140306-55140325 None:intergenic 35.0%
GAACAAAACTGATTGGAATG+AGG - chr8_1:55140885-55140904 Msa1201870:intron 35.0%
! AAGACACTCGTTTTCTACAA+AGG - chr8_1:55140908-55140927 Msa1201870:intron 35.0%
! CAATCAGTTTTCTGTCCATT+AGG + chr8_1:55140941-55140960 None:intergenic 35.0%
! CTAATGGACAGAAAACTGAT+TGG - chr8_1:55140939-55140958 Msa1201870:intron 35.0%
! TATAAGTTGGAGAATGAGCA+TGG - chr8_1:55141178-55141197 Msa1201870:intron 35.0%
GAAAAAGACACATCAAGAGA+AGG + chr8_1:55141263-55141282 None:intergenic 35.0%
!!! AGTGACTTTTGACTTCTTTC+TGG + chr8_1:55141455-55141474 None:intergenic 35.0%
! CACACACATATTGCCTTTTA+AGG - chr8_1:55141963-55141982 Msa1201870:intron 35.0%
!!! AGGGTAAAGGTTTTTTTCTC+AGG - chr8_1:55141983-55142002 Msa1201870:intron 35.0%
GCATAATATATGCAGAAGTC+GGG - chr8_1:55142611-55142630 Msa1201870:intron 35.0%
CATAATATATGCAGAAGTCG+GGG - chr8_1:55142612-55142631 Msa1201870:intron 35.0%
TGTTCATCATATAAGTGACC+TGG + chr8_1:55143065-55143084 None:intergenic 35.0%
TGTCTTAAGATGAGGTCAAT+GGG + chr8_1:55143116-55143135 None:intergenic 35.0%
TTGTCTTAAGATGAGGTCAA+TGG + chr8_1:55143117-55143136 None:intergenic 35.0%
!!! TTTTGAGGTGAAATCTTCTG+TGG + chr8_1:55143140-55143159 None:intergenic 35.0%
CTTCATGCATTCAGAACAAA+TGG - chr8_1:55143214-55143233 Msa1201870:CDS 35.0%
AAAGTCCCTCTTTAACAAAG+AGG - chr8_1:55143255-55143274 Msa1201870:CDS 35.0%
! GTTTTGCCTCTTTGTTAAAG+AGG + chr8_1:55143264-55143283 None:intergenic 35.0%
AAAGAGAGAAAGTGACTGAT+TGG - chr8_1:55143354-55143373 Msa1201870:five_prime_UTR 35.0%
AGTTGAGTCAAGAAGATCAT+AGG - chr8_1:55143405-55143424 Msa1201870:five_prime_UTR 35.0%
GTTCCTACTTCAAAGTAGTA+AGG - chr8_1:55143454-55143473 Msa1201870:five_prime_UTR 35.0%
!! CATCCTTACTACTTTGAAGT+AGG + chr8_1:55143460-55143479 None:intergenic 35.0%
ATCTATACCGTATTGAACCC+TGG - chr8_1:55140207-55140226 Msa1201870:CDS 40.0%
TCTATACCGTATTGAACCCT+GGG - chr8_1:55140208-55140227 Msa1201870:CDS 40.0%
AATATACCTTGGAGATCCCA+GGG + chr8_1:55140227-55140246 None:intergenic 40.0%
TAATATACCTTGGAGATCCC+AGG + chr8_1:55140228-55140247 None:intergenic 40.0%
GAGATGTAGAATTGGGAATG+AGG - chr8_1:55140739-55140758 Msa1201870:intron 40.0%
GAGAACGAATAGAGCTACAA+TGG - chr8_1:55140817-55140836 Msa1201870:intron 40.0%
!! ATACACCGACTTATCTCTTC+CGG + chr8_1:55140861-55140880 None:intergenic 40.0%
!! TACAAAGGAAGAGCACCTAA+TGG - chr8_1:55140923-55140942 Msa1201870:intron 40.0%
ATGTATATACTTGCCTGTGG+AGG + chr8_1:55141004-55141023 None:intergenic 40.0%
!!! GGTTAGAGAGTTTTGAAGAG+AGG - chr8_1:55141571-55141590 Msa1201870:intron 40.0%
TATCAACTGAGCTAAGGTCA+CGG + chr8_1:55142583-55142602 None:intergenic 40.0%
! TGACCTTAGCTCAGTTGATA+GGG - chr8_1:55142583-55142602 Msa1201870:intron 40.0%
TAAATTGAGTGTTCCCTTGC+AGG - chr8_1:55142965-55142984 Msa1201870:intron 40.0%
ACAAATGAAAGATGGGATCC+AGG - chr8_1:55143044-55143063 Msa1201870:intron 40.0%
AAACAAGTAGCACCATCTCA+AGG - chr8_1:55143084-55143103 Msa1201870:intron 40.0%
AACAAGTAGCACCATCTCAA+GGG - chr8_1:55143085-55143104 Msa1201870:intron 40.0%
GTCTTAAGATGAGGTCAATG+GGG + chr8_1:55143115-55143134 None:intergenic 40.0%
TCTGTGGTTGTCTTAAGATG+AGG + chr8_1:55143124-55143143 None:intergenic 40.0%
AGAGAAAGTGACTGATTGGA+GGG - chr8_1:55143358-55143377 Msa1201870:five_prime_UTR 40.0%
ACAAGGTCAGATTGTGACAT+TGG - chr8_1:55143512-55143531 Msa1201870:five_prime_UTR 40.0%
! GGTGAGAGATAAAGAGTGTG+AGG + chr8_1:55139938-55139957 None:intergenic 45.0%
ACGAATAGAGCTACAATGGC+AGG - chr8_1:55140821-55140840 Msa1201870:intron 45.0%
CGAATAGAGCTACAATGGCA+GGG - chr8_1:55140822-55140841 Msa1201870:intron 45.0%
AGCAACCGGAAGAGATAAGT+CGG - chr8_1:55140853-55140872 Msa1201870:intron 45.0%
AGTTGAAAATGCACCTCCAC+AGG - chr8_1:55140988-55141007 Msa1201870:intron 45.0%
GCTGAGATCACTAACTAGAG+AGG + chr8_1:55141664-55141683 None:intergenic 45.0%
ATCAACTGAGCTAAGGTCAC+GGG + chr8_1:55142582-55142601 None:intergenic 45.0%
GTGACCTTAGCTCAGTTGAT+AGG - chr8_1:55142582-55142601 Msa1201870:intron 45.0%
TGTCCCTATCAACTGAGCTA+AGG + chr8_1:55142589-55142608 None:intergenic 45.0%
! ATATGGAGAAGTGGGGTATC+CGG + chr8_1:55142642-55142661 None:intergenic 45.0%
ATGTGTGAGCTTCAGTCACT+AGG - chr8_1:55142667-55142686 Msa1201870:intron 45.0%
!! AAAGAGGGACTTTCTAGCTG+AGG + chr8_1:55143248-55143267 None:intergenic 45.0%
GAGAGAAAGTGACTGATTGG+AGG - chr8_1:55143357-55143376 Msa1201870:five_prime_UTR 45.0%
GAGGGATCTTGACAAGTTTG+TGG - chr8_1:55143376-55143395 Msa1201870:five_prime_UTR 45.0%
!! ATATTTAATTAATTAATCAA+GGG + chr8_1:55141100-55141119 None:intergenic 5.0%
!! AATATTTAATTAATTAATCA+AGG + chr8_1:55141101-55141120 None:intergenic 5.0%
!!! TTTTATTTTTATTCATTTTA+AGG - chr8_1:55142075-55142094 Msa1201870:intron 5.0%
!!! AAAAAAAAAACTTTATTTAA+AGG - chr8_1:55142699-55142718 Msa1201870:intron 5.0%
CATGTGTCCCACCTGGATTT+CGG - chr8_1:55140093-55140112 Msa1201870:CDS 50.0%
TGGATTTCGGTTCCACCCAA+CGG - chr8_1:55140106-55140125 Msa1201870:CDS 50.0%
CAACAAGCTCTCCATCCGTT+GGG + chr8_1:55140124-55140143 None:intergenic 50.0%
GGAGATCCCAGGGTTCAATA+CGG + chr8_1:55140217-55140236 None:intergenic 50.0%
ATTGAACCCTGGGATCTCCA+AGG - chr8_1:55140218-55140237 Msa1201870:CDS 50.0%
GGAATGAGGAGCAACATGAG+TGG - chr8_1:55140753-55140772 Msa1201870:intron 50.0%
CTATTCGTTCTCGTCCCTGT+TGG + chr8_1:55140809-55140828 None:intergenic 50.0%
TCAACTGAGCTAAGGTCACG+GGG + chr8_1:55142581-55142600 None:intergenic 50.0%
! TATGGAGAAGTGGGGTATCC+GGG + chr8_1:55142641-55142660 None:intergenic 50.0%
AGTGTTCCCTTGCAGGAAGA+AGG - chr8_1:55142972-55142991 Msa1201870:intron 50.0%
TTCCCTTGCAGGAAGAAGGT+TGG - chr8_1:55142976-55142995 Msa1201870:intron 50.0%
TCCCTTGCAGGAAGAAGGTT+GGG - chr8_1:55142977-55142996 Msa1201870:intron 50.0%
ACCCAACCTTCTTCCTGCAA+GGG + chr8_1:55142981-55143000 None:intergenic 50.0%
AACCCAACCTTCTTCCTGCA+AGG + chr8_1:55142982-55143001 None:intergenic 50.0%
AAGTAGCACCATCTCAAGGG+TGG - chr8_1:55143088-55143107 Msa1201870:intron 50.0%
!! GGACTTTCTAGCTGAGGAAG+AGG + chr8_1:55143242-55143261 None:intergenic 50.0%
ATGGAGTCATGTGTCCCACC+TGG - chr8_1:55140086-55140105 Msa1201870:CDS 55.0%
GGTGGAACCGAAATCCAGGT+GGG + chr8_1:55140103-55140122 None:intergenic 55.0%
GTTGGGTGGAACCGAAATCC+AGG + chr8_1:55140107-55140126 None:intergenic 55.0%
TTTCGGTTCCACCCAACGGA+TGG - chr8_1:55140110-55140129 Msa1201870:CDS 55.0%
CCAACAAGCTCTCCATCCGT+TGG + chr8_1:55140125-55140144 None:intergenic 55.0%
CCAACGGATGGAGAGCTTGT+TGG - chr8_1:55140122-55140141 Msa1201870:CDS 55.0%
GAGCTACAATGGCAGGGTTC+TGG - chr8_1:55140828-55140847 Msa1201870:intron 55.0%
!! GCAGGGTTCTGGAAAGCAAC+CGG - chr8_1:55140839-55140858 Msa1201870:intron 55.0%
ATGCAGAAGTCGGGGAATCC+CGG - chr8_1:55142620-55142639 Msa1201870:intron 55.0%
AATGGGGTCCACCCTTGAGA+TGG + chr8_1:55143099-55143118 None:intergenic 55.0%
GGGTGGAACCGAAATCCAGG+TGG + chr8_1:55140104-55140123 None:intergenic 60.0%
CAAGCTCTCCATCCGTTGGG+TGG + chr8_1:55140121-55140140 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 55139830 55143556 55139830 ID=Msa1201870;Name=Msa1201870
chr8_1 mRNA 55139830 55143556 55139830 ID=Msa1201870-mRNA-1;Parent=Msa1201870;Name=Msa1201870-mRNA-1;_AED=0.13;_eAED=0.13;_QI=253|0|0.33|1|0|0.66|3|0|306
chr8_1 exon 55139830 55140399 55139830 ID=Msa1201870-mRNA-1:exon:17848;Parent=Msa1201870-mRNA-1
chr8_1 exon 55142398 55142591 55142398 ID=Msa1201870-mRNA-1:exon:17847;Parent=Msa1201870-mRNA-1
chr8_1 exon 55143147 55143556 55143147 ID=Msa1201870-mRNA-1:exon:17846;Parent=Msa1201870-mRNA-1
chr8_1 five_prime_UTR 55143304 55143556 55143304 ID=Msa1201870-mRNA-1:five_prime_utr;Parent=Msa1201870-mRNA-1
chr8_1 CDS 55143147 55143303 55143147 ID=Msa1201870-mRNA-1:cds;Parent=Msa1201870-mRNA-1
chr8_1 CDS 55142398 55142591 55142398 ID=Msa1201870-mRNA-1:cds;Parent=Msa1201870-mRNA-1
chr8_1 CDS 55139830 55140399 55139830 ID=Msa1201870-mRNA-1:cds;Parent=Msa1201870-mRNA-1
Gene Sequence

>Msa1201870

ATGATGGAGTCATGTGTCCCACCTGGATTTCGGTTCCACCCAACGGATGGAGAGCTTGTTGGTTATTATCTTAGAAAGAAAGTAGCTTCTCACAAGATTGATCTTGATGTTATCAAAGAGATTGATCTATACCGTATTGAACCCTGGGATCTCCAAGATAAGAAATATCCAACAGGGACGAGAACGAATAGAGCTACAATGGCAGGGTTCTGGAAAGCAACCGGAAGAGATAAGTCGGTGTATGAACGAACAAAACTGATTGGAATGAGGAAGACACTCGTTTTCTACAAAGGAAGAGCACCTAATGGACAGAAAACTGATTGGATCATGCATGAATATAGGCTTGAAACAGAAGAAGGTTGGGTTGTGTGCAAAGCATTCAAGAAAAAAACAAGTGTCCAAGCAAAAACAAATGAAAGATGGGATCCAGGTCACTTATATGATGAACAAACAAGTAGCACCATCTCAAGGGTGGACCCCATTGACCTCATCTTAAGACAACCACAGAAGATTTCACCTCAAAATTTCATGTACAAACAAGAGATAGAAGCAGAAGCAGAAGCAGATACATTATTAAGCTTCATGCATTCAGAACAAATGGTACCTCTTCCTCAGCTAGAAAGTCCCTCTTTAACAAAGAGGCAAAACTCAATGCCAATAATATCAGAACATAACAATAATGAATTTCAAAATGGATTATTATTCAACATCAACAACAAAAGAGAGAAAGTGACTGATTGGAGGGATCTTGACAAGTTTGTGGCTTCTCAGTTGAGTCAAGAAGATCATAGGCATGAAACAAGCTCAGACATGTCATTGTTCCTACTTCAAAGTAGTAAGGATGATGAAGAGAACAAGTTAAGCTCATTTTTAACTACAAGGTCAGATTGTGACATTGGTATATGTGTATTTGAAAATTAA
Protein sequence

>Msa1201870

MMESCVPPGFRFHPTDGELVGYYLRKKVASHKIDLDVIKEIDLYRIEPWDLQDKKYPTGTRTNRATMAGFWKATGRDKSVYERTKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLETEEGWVVCKAFKKKTSVQAKTNERWDPGHLYDEQTSSTISRVDPIDLILRQPQKISPQNFMYKQEIEAEAEADTLLSFMHSEQMVPLPQLESPSLTKRQNSMPIISEHNNNEFQNGLLFNINNKREKVTDWRDLDKFVASQLSQEDHRHETSSDMSLFLLQSSKDDEENKLSSFLTTRSDCDIGICVFEN*