AlfalfaGEDB | Msa1201900

M. sativa cultivar zhongmu-4 / Msa1201900

KEGG: K17604
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1201900	XP_039689000.1	78.363	513	44	3	197	642	276	788	0.0	806
Msa1201900	XP_039689000.1	90.780	141	11	1	64	204	74	212	3.75e-74	264

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1201900	sp\|Q9SZL8\|FRS5_ARATH	32.265	468	242	6	74	471	70	532	7.70e-73	253

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa1201900	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1201900	MtrunA17_Chr2g0296781	41.379	290	165	3	185	474	167	451	1.42e-68	237
Msa1201900	MtrunA17_Chr6g0477261	41.197	284	162	3	185	468	56	334	5.16e-67	231
Msa1201900	MtrunA17_Chr3g0080351	30.068	439	247	7	72	454	71	505	1.84e-62	222
Msa1201900	MtrunA17_Chr5g0441581	37.857	280	166	3	196	472	203	477	2.24e-61	217
Msa1201900	MtrunA17_Chr5g0448761	35.135	333	198	5	202	521	252	579	3.84e-61	218
Msa1201900	MtrunA17_Chr1g0196541	38.434	281	171	2	197	477	176	454	2.79e-60	214
Msa1201900	MtrunA17_Chr1g0202341	40.000	270	161	1	202	471	239	507	9.46e-60	212
Msa1201900	MtrunA17_Chr6g0458391	29.360	453	253	6	77	473	225	666	3.01e-59	212
Msa1201900	MtrunA17_Chr2g0287061	31.695	407	201	7	75	432	181	559	2.42e-58	210
Msa1201900	MtrunA17_Chr1g0207551	38.077	260	160	1	202	461	220	478	7.59e-57	206

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1201900	AT4G38180.1	32.265	468	242	6	74	471	70	532	7.83e-74	253
Msa1201900	AT3G22170.2	27.865	445	258	7	75	461	68	507	2.44e-57	208
Msa1201900	AT3G22170.1	27.865	445	258	7	75	461	68	507	2.44e-57	208
Msa1201900	AT4G15090.1	36.604	265	167	1	197	461	235	498	1.92e-56	205
Msa1201900	AT4G15090.5	36.604	265	167	1	197	461	235	498	1.92e-56	205
Msa1201900	AT4G15090.3	36.604	265	167	1	197	461	235	498	1.92e-56	205
Msa1201900	AT4G15090.2	36.604	265	167	1	197	461	235	498	1.92e-56	205
Msa1201900	AT4G15090.4	36.604	265	167	1	197	461	235	498	1.92e-56	205
Msa1201900	AT2G27110.2	27.533	454	247	5	76	471	48	477	2.92e-55	202
Msa1201900	AT2G27110.1	27.533	454	247	5	76	471	48	477	2.92e-55	202

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Find 119 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAATTGGATGGATTTGA+AGG	0.422078	8_1:-55177131	Msa1201900:CDS
AAAGTGTCTTTGAAATATGC+TGG	0.421516	8_1:+55177830	None:intergenic
AAAGTTTCAAGTCATGTGTT+TGG	0.339166	8_1:-55177967	Msa1201900:CDS
AAATGAGTTTGAAGAGACTT+GGG	0.576206	8_1:-55177930	Msa1201900:CDS
AAATTGCTTCTTGTGTTAAA+TGG	0.133780	8_1:-55177170	Msa1201900:CDS
AACAATTGGATGGATTTGAA+GGG	0.574388	8_1:-55177130	Msa1201900:CDS
AAGAATCAAATCATCTGTCC+TGG	0.550254	8_1:+55177094	None:intergenic
AAGGGAGTTCTAAGAGAACC+AGG	0.594888	8_1:-55177112	Msa1201900:CDS
AAGTGTCTTTGAAATATGCT+GGG	0.568081	8_1:+55177831	None:intergenic
AAGTTTCAAGTCATGTGTTT+GGG	0.313111	8_1:-55177966	Msa1201900:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGAATATGGAATTAGGTG+TGG	-	chr8_1:55176956-55176975	Msa1201900:CDS	30.0%
ATTTCTTACACTATCACCAT+CGG	+	chr8_1:55177073-55177092	None:intergenic	30.0%
AACTCAATTGGTAAAGACAA+TGG	+	chr8_1:55177258-55177277	None:intergenic	30.0%
CCCTATGAATTTAACTCAAT+TGG	+	chr8_1:55177270-55177289	None:intergenic	30.0%
GTGACTCTCTCAAAAAAAAA+AGG	-	chr8_1:55177302-55177321	Msa1201900:CDS	30.0%
ATAGAAATCAAAAGAGGATG+TGG	-	chr8_1:55177492-55177511	Msa1201900:intron	30.0%
TCATTCAATCGAATTAAGAG+AGG	-	chr8_1:55177530-55177549	Msa1201900:intron	30.0%
AATCATAGTACACGACTAAA+GGG	-	chr8_1:55177837-55177856	Msa1201900:CDS	30.0%
TTAAAGACGTAGAATAAGAG+AGG	-	chr8_1:55177954-55177973	Msa1201900:CDS	30.0%
TCTAAACTTGAGTTAACCTT+AGG	+	chr8_1:55178224-55178243	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	55176902	55181219	55176902	ID=Msa1201900;Name=Msa1201900
chr8_1	mRNA	55176902	55181219	55176902	ID=Msa1201900-mRNA-1;Parent=Msa1201900;Name=Msa1201900-mRNA-1;_AED=0.27;_eAED=0.29;_QI=0\|0\|0\|0.6\|1\|1\|5\|0\|642
chr8_1	exon	55181190	55181219	55181190	ID=Msa1201900-mRNA-1:exon:17853;Parent=Msa1201900-mRNA-1
chr8_1	exon	55179997	55180155	55179997	ID=Msa1201900-mRNA-1:exon:17852;Parent=Msa1201900-mRNA-1
chr8_1	exon	55178638	55179042	55178638	ID=Msa1201900-mRNA-1:exon:17851;Parent=Msa1201900-mRNA-1
chr8_1	exon	55177613	55178437	55177613	ID=Msa1201900-mRNA-1:exon:17850;Parent=Msa1201900-mRNA-1
chr8_1	exon	55176902	55177411	55176902	ID=Msa1201900-mRNA-1:exon:17849;Parent=Msa1201900-mRNA-1
chr8_1	CDS	55181190	55181219	55181190	ID=Msa1201900-mRNA-1:cds;Parent=Msa1201900-mRNA-1
chr8_1	CDS	55179997	55180155	55179997	ID=Msa1201900-mRNA-1:cds;Parent=Msa1201900-mRNA-1
chr8_1	CDS	55178638	55179042	55178638	ID=Msa1201900-mRNA-1:cds;Parent=Msa1201900-mRNA-1
chr8_1	CDS	55177613	55178437	55177613	ID=Msa1201900-mRNA-1:cds;Parent=Msa1201900-mRNA-1
chr8_1	CDS	55176902	55177411	55176902	ID=Msa1201900-mRNA-1:cds;Parent=Msa1201900-mRNA-1

Gene Sequence

>Msa1201900

ATGAGTAGTGCCTATGTGAAACTTTCAAATAATAAGAGAGGATGTAACCAAGTTGCTTGGGCTCCAGTGGCAAGGAGCTCCTTCCAAGGACGTACTCGGAGAATACCGGGTTCGATTCCCAGAGGGAACAACGCTTGGCTAGTCGGCATGAGCCGGATTAGTCGCACACGTTTGGTGGTTCGGAAACTGGAATATGAATGTGTGCCAAATTGTGATGATGAATTAAAGCCTACAATTGGACAAGTATTTGATACGTTAGCAGAAGGTAAAAAAATTTACGAAAAATATGCACTCTCTGTCGGATTTAGCGTGCGTTCATCATCATCGACTATAGATAAAAACGGCGTGAAGCGTTGGAAGTATTTTGTTTGCTCGAAAGAGGGTTATTTGCCAAATAAGAAGGATGGTAAGGAGCAAAGTGAATCTACTGTCAAGGTTAAAAGAAGAAGGGCTTTAACAAGAGAAGGATGCAATGCAAATGTTGTTTTCAAATGGGTGGGGGAAGGAAAGTATGAGATAGCTCGATTTCATGAAAGCCATACACATCCACTTGCTTCACCTATGAAGAGACCGTTTCTCAGGTCTGCAAGGAAAAAAGAAGTTAATCCATCCTTTTATTATGCGTATGACGTAGGTGAAGAAGGCCGACTGAAGCATGTTTTTTGGGCAGATGGTATTTGTAGGAAAAATTATTCCTTATTTGGGGATGTGGTTTCATTTGATACTACGTATCAAACAAATAAATATCATTTGATTTTTGCACCTTTCACCGGGATAAACCATCATCGACAATCTATTACCTTCGGCGTAGGACTTATAACAAATGAGAAAAGTGATTCATTCGTATGTTTGTTTGAAAAGTTTTTGGAAGCAATGGGCGGACATAAGCCAACTCTTATAATAACCGATCAAGATCCTTCCATGAAAGTGGCTATAGAAAATATGTTTGATTCTTCTACTCATAGATTGTGCATGTGGCATATCATGAAAAAAGTTTCTGAAAAAGTAGGTGTTTCCATGAATGATGAGGATGAATTCAACAAAAGTTTCAAGTCATGTGTTTGGGGTTCAGAGACACCAAATGAGTTTGAAGAGACTTGGGTGTTTTTGATGACAAGGTTTGAGTTAGAAAAGAATAAATGGTTGGCACATATGTTTGAGATTCGAAGCACTTGGATCCCAGCATATTTCAAAGACACTTTTATGGCAGGGGTATTGAGAACAACATCAAGATCAGAAAGTGAGAATTCTTTCTATGGTAATTTTCTGAATCCTAATGTTAACTTGGTTGAATTTTGGATGAGATTTGATTCAGCAATAGAAGCGCAACGACATAAGGAGTTACTAGCTGATAATAACTCAATTCATTCTAAACCAAAACTATTGTTGGAACGTGGTATCGAGAGGCATGCAAGAGATGCTGAAGGAATACCTTGTAGACACATACTTTGTGTTTTAAAGGGAAAAAATTTCAATGAAATACCAAGTAAGCACATTGTGAATAGGTGGACTAAGTTTGCAAACAGAACACCTATTTTTGACATAGCTGGCAATGTCTTGGAAGAAGACAACAAACTCATTTCTGATGTGTGGAACCACTTACATAGCTGTGTGGAGAAGGCTGGAAAAGATAAGGAAAAATTGCTTCTTGTGTTAAATGGGGTTGTTAACATGGAAAAACAATTGGATGGATTTGAAGGGAGTTCTAAGAGAACCAGGACAGATGATTTGATTCTTGGGTCCAATATTCCTGACGAAGTAGAAATCCTTCCACCAAAATTTGCAAAGACTAAAGGTAGTGGTAAAAGAATCAAAGGTGGAAAAGAGAAGGCTATTGAACAACAACAAAAAAAAGCAATACTTTGTAAGTCATGCGGTGAGTATGTGCATCATGACAGCCGCAATTGTCCCCAAAGATCATCTCCATAA

Protein sequence

>Msa1201900

MSSAYVKLSNNKRGCNQVAWAPVARSSFQGRTRRIPGSIPRGNNAWLVGMSRISRTRLVVRKLEYECVPNCDDELKPTIGQVFDTLAEGKKIYEKYALSVGFSVRSSSSTIDKNGVKRWKYFVCSKEGYLPNKKDGKEQSESTVKVKRRRALTREGCNANVVFKWVGEGKYEIARFHESHTHPLASPMKRPFLRSARKKEVNPSFYYAYDVGEEGRLKHVFWADGICRKNYSLFGDVVSFDTTYQTNKYHLIFAPFTGINHHRQSITFGVGLITNEKSDSFVCLFEKFLEAMGGHKPTLIITDQDPSMKVAIENMFDSSTHRLCMWHIMKKVSEKVGVSMNDEDEFNKSFKSCVWGSETPNEFEETWVFLMTRFELEKNKWLAHMFEIRSTWIPAYFKDTFMAGVLRTTSRSESENSFYGNFLNPNVNLVEFWMRFDSAIEAQRHKELLADNNSIHSKPKLLLERGIERHARDAEGIPCRHILCVLKGKNFNEIPSKHIVNRWTKFANRTPIFDIAGNVLEEDNKLISDVWNHLHSCVEKAGKDKEKLLLVLNGVVNMEKQLDGFEGSSKRTRTDDLILGSNIPDEVEILPPKFAKTKGSGKRIKGGKEKAIEQQQKKAILCKSCGEYVHHDSRNCPQRSSP*