AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1201900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1201900 MtrunA17_Chr2g0296781 41.379 290 165 3 185 474 167 451 1.42e-68 237
Msa1201900 MtrunA17_Chr6g0477261 41.197 284 162 3 185 468 56 334 5.16e-67 231
Msa1201900 MtrunA17_Chr3g0080351 30.068 439 247 7 72 454 71 505 1.84e-62 222
Msa1201900 MtrunA17_Chr5g0441581 37.857 280 166 3 196 472 203 477 2.24e-61 217
Msa1201900 MtrunA17_Chr5g0448761 35.135 333 198 5 202 521 252 579 3.84e-61 218
Msa1201900 MtrunA17_Chr1g0196541 38.434 281 171 2 197 477 176 454 2.79e-60 214
Msa1201900 MtrunA17_Chr1g0202341 40.000 270 161 1 202 471 239 507 9.46e-60 212
Msa1201900 MtrunA17_Chr6g0458391 29.360 453 253 6 77 473 225 666 3.01e-59 212
Msa1201900 MtrunA17_Chr2g0287061 31.695 407 201 7 75 432 181 559 2.42e-58 210
Msa1201900 MtrunA17_Chr1g0207551 38.077 260 160 1 202 461 220 478 7.59e-57 206
Msa1201900 MtrunA17_Chr3g0082121 29.801 453 247 9 77 466 43 487 6.15e-56 202
Msa1201900 MtrunA17_Chr8g0363841 37.218 266 165 2 198 463 202 465 2.77e-55 199
Msa1201900 MtrunA17_Chr5g0448511 36.000 275 175 1 197 471 22 295 3.94e-55 196
Msa1201900 MtrunA17_Chr2g0287651 37.500 264 159 2 198 461 262 519 3.97e-55 201
Msa1201900 MtrunA17_Chr1g0203051 37.736 265 157 3 192 456 260 516 8.87e-55 197
Msa1201900 MtrunA17_Chr2g0324011 29.158 463 258 7 68 464 1 459 3.39e-54 195
Msa1201900 MtrunA17_Chr3g0118611 34.074 270 175 1 202 471 133 399 4.53e-54 197
Msa1201900 MtrunA17_Chr2g0329031 35.361 263 169 1 199 461 190 451 3.16e-53 194
Msa1201900 MtrunA17_Chr1g0198761 26.364 660 359 19 78 639 106 736 1.12e-50 187
Msa1201900 MtrunA17_Chr5g0440451 35.769 260 164 1 202 461 236 492 3.68e-50 187
Msa1201900 MtrunA17_Chr2g0291581 34.211 266 173 2 196 461 239 502 2.45e-45 171
Msa1201900 MtrunA17_Chr1g0164591 36.449 214 136 0 192 405 94 307 2.06e-43 159
Msa1201900 MtrunA17_Chr1g0203721 29.293 297 209 1 202 498 254 549 1.76e-42 164
Msa1201900 MtrunA17_Chr2g0291591 29.615 260 181 2 202 461 248 505 1.35e-40 156
Msa1201900 MtrunA17_Chr5g0431001 33.333 288 177 6 152 426 198 483 8.39e-40 152
Msa1201900 MtrunA17_Chr2g0276841 24.318 440 251 10 77 441 70 502 4.81e-31 129
Msa1201900 MtrunA17_Chr2g0294841 22.973 518 312 13 197 636 237 745 4.07e-30 126
Msa1201900 MtrunA17_Chr2g0290391 24.793 363 215 7 199 505 250 610 1.12e-29 124
Msa1201900 MtrunA17_Chr7g0258861 29.167 288 126 6 76 291 9 290 3.35e-24 103
Msa1201900 MtrunA17_Chr4g0033611 37.838 111 58 3 76 184 75 176 3.28e-15 76.3
Msa1201900 MtrunA17_Chr2g0329421 36.937 111 59 3 76 184 26 127 1.13e-13 70.5
Msa1201900 MtrunA17_Chr1g0149131 30.909 110 76 0 292 401 1 110 1.83e-13 67.4
Msa1201900 MtrunA17_Chr7g0233911 37.069 116 58 4 76 186 33 138 2.83e-12 66.6
Msa1201900 MtrunA17_Chr2g0308841 27.642 123 87 2 350 471 4 125 2.03e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1201900 AT4G38180.1 32.265 468 242 6 74 471 70 532 7.83e-74 253
Msa1201900 AT3G22170.2 27.865 445 258 7 75 461 68 507 2.44e-57 208
Msa1201900 AT3G22170.1 27.865 445 258 7 75 461 68 507 2.44e-57 208
Msa1201900 AT4G15090.1 36.604 265 167 1 197 461 235 498 1.92e-56 205
Msa1201900 AT4G15090.5 36.604 265 167 1 197 461 235 498 1.92e-56 205
Msa1201900 AT4G15090.3 36.604 265 167 1 197 461 235 498 1.92e-56 205
Msa1201900 AT4G15090.2 36.604 265 167 1 197 461 235 498 1.92e-56 205
Msa1201900 AT4G15090.4 36.604 265 167 1 197 461 235 498 1.92e-56 205
Msa1201900 AT2G27110.2 27.533 454 247 5 76 471 48 477 2.92e-55 202
Msa1201900 AT2G27110.1 27.533 454 247 5 76 471 48 477 2.92e-55 202
Msa1201900 AT2G27110.3 33.455 275 180 1 197 471 61 332 7.05e-54 196
Msa1201900 AT3G06250.2 29.054 444 239 8 76 472 189 603 6.53e-50 186
Msa1201900 AT3G06250.1 29.054 444 239 8 76 472 189 603 6.53e-50 186
Msa1201900 AT3G06250.3 29.054 444 239 8 76 472 189 603 6.53e-50 186
Msa1201900 AT1G80010.1 34.615 260 169 1 202 461 286 544 9.65e-50 185
Msa1201900 AT4G38170.1 35.507 276 172 3 197 471 27 297 1.97e-49 181
Msa1201900 AT2G32250.5 28.900 391 233 6 80 436 41 420 1.12e-47 179
Msa1201900 AT2G32250.2 28.900 391 233 6 80 436 41 420 1.57e-47 179
Msa1201900 AT2G32250.4 28.900 391 233 6 80 436 41 420 1.57e-47 179
Msa1201900 AT2G32250.6 28.900 391 233 6 80 436 41 420 1.77e-47 179
Msa1201900 AT2G32250.1 28.900 391 233 6 80 436 41 420 1.77e-47 179
Msa1201900 AT2G32250.3 28.900 391 233 6 80 436 41 420 1.77e-47 179
Msa1201900 AT2G32250.7 28.866 388 231 6 83 436 3 379 2.73e-47 178
Msa1201900 AT2G32250.8 28.866 388 231 6 83 436 3 379 2.79e-47 178
Msa1201900 AT1G76320.3 33.208 265 176 1 197 461 172 435 4.15e-46 174
Msa1201900 AT1G76320.2 33.208 265 176 1 197 461 172 435 9.52e-46 173
Msa1201900 AT1G76320.1 33.208 265 176 1 197 461 172 435 9.58e-46 173
Msa1201900 AT1G76320.4 33.208 265 176 1 197 461 172 435 9.58e-46 173
Msa1201900 AT5G18960.2 26.726 449 246 8 76 472 210 627 2.06e-45 173
Msa1201900 AT5G18960.1 26.726 449 246 8 76 472 210 627 2.06e-45 173
Msa1201900 AT4G19990.3 28.538 431 251 7 80 461 24 446 1.19e-44 171
Msa1201900 AT4G19990.4 28.538 431 251 7 80 461 24 446 1.19e-44 171
Msa1201900 AT4G19990.5 28.538 431 251 7 80 461 24 446 1.24e-44 170
Msa1201900 AT4G19990.6 28.538 431 251 7 80 461 24 446 1.60e-44 170
Msa1201900 AT4G19990.2 28.538 431 251 7 80 461 24 446 1.60e-44 170
Msa1201900 AT4G19990.7 28.538 431 251 7 80 461 38 460 1.61e-44 170
Msa1201900 AT1G52520.1 32.819 259 171 3 196 454 256 511 2.83e-44 169
Msa1201900 AT4G19990.1 34.483 261 169 2 202 461 130 389 7.92e-43 164
Msa1201900 AT5G28530.1 28.082 292 200 7 200 489 255 538 8.46e-27 116
Msa1201900 AT5G28530.3 31.222 221 147 4 200 418 255 472 1.76e-26 115
Msa1201900 AT5G28530.2 31.222 221 147 4 200 418 255 472 1.76e-26 115
Msa1201900 AT1G10240.2 28.340 247 165 5 192 432 231 471 1.55e-25 112
Msa1201900 AT1G10240.1 28.340 247 165 5 192 432 231 471 1.55e-25 112
Msa1201900 AT5G28530.4 25.439 228 160 7 264 489 256 475 9.44e-13 71.6
Msa1201900 AT5G28530.5 28.662 157 107 4 264 418 256 409 1.62e-12 70.9
Msa1201900 AT3G07500.1 30.631 111 69 2 75 184 31 134 4.31e-11 63.5

Find 119 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTTAGTCTTTGCAAATTT+TGG 0.090976 8_1:+55177035 None:intergenic
AAATTGCTTCTTGTGTTAAA+TGG 0.133780 8_1:-55177170 Msa1201900:CDS
ATGTTAACTTGGTTGAATTT+TGG 0.201090 8_1:-55177733 Msa1201900:CDS
TCCTTACCATCCTTCTTATT+TGG 0.212526 8_1:+55178819 None:intergenic
TTCTACTTCGTCAGGAATAT+TGG 0.232123 8_1:+55177067 None:intergenic
GCAATTATGGAGATGATCTT+TGG 0.251938 8_1:+55176898 None:intergenic
TTTAATTCATCATCACAATT+TGG 0.253101 8_1:+55179005 None:intergenic
TTGAGTTAGAAAAGAATAAA+TGG 0.272170 8_1:-55177889 Msa1201900:CDS
AGGACAGATGATTTGATTCT+TGG 0.289591 8_1:-55177092 Msa1201900:CDS
TGAAACCACATCCCCAAATA+AGG 0.310942 8_1:+55178315 None:intergenic
CTATTCACAATGTGCTTACT+TGG 0.311024 8_1:+55177326 None:intergenic
ACGTTTGGTGGTTCGGAAAC+TGG 0.312411 8_1:-55179996 Msa1201900:intron
AAGTTTCAAGTCATGTGTTT+GGG 0.313111 8_1:-55177966 Msa1201900:CDS
AATTGCTTCTTGTGTTAAAT+GGG 0.315429 8_1:-55177169 Msa1201900:CDS
GTCGCACACGTTTGGTGGTT+CGG 0.323556 8_1:-55180003 Msa1201900:CDS
TTCTAAACCAAAACTATTGT+TGG 0.324685 8_1:-55177642 Msa1201900:CDS
CCACGTTCCAACAATAGTTT+TGG 0.324928 8_1:+55177635 None:intergenic
AATTCAACCAAGTTAACATT+AGG 0.328343 8_1:+55177737 None:intergenic
AAAGTTTCAAGTCATGTGTT+TGG 0.339166 8_1:-55177967 Msa1201900:CDS
TCAAATACTTGTCCAATTGT+AGG 0.344020 8_1:+55178981 None:intergenic
GAAAGTGAGAATTCTTTCTA+TGG 0.344600 8_1:-55177773 Msa1201900:CDS
GAATTCATCCTCATCATTCA+TGG 0.363918 8_1:+55177994 None:intergenic
CAATTATGGAGATGATCTTT+GGG 0.366526 8_1:+55176899 None:intergenic
CAAGTCTCTTCAAACTCATT+TGG 0.371188 8_1:+55177932 None:intergenic
TACGTCATACGCATAATAAA+AGG 0.383912 8_1:+55178399 None:intergenic
TAGCCAAGCGTTGTTCCCTC+TGG 0.406023 8_1:+55180045 None:intergenic
TTTGGGCAGATGGTATTTGT+AGG 0.408238 8_1:-55178348 Msa1201900:CDS
AAAGTGTCTTTGAAATATGC+TGG 0.421516 8_1:+55177830 None:intergenic
AAACAATTGGATGGATTTGA+AGG 0.422078 8_1:-55177131 Msa1201900:CDS
GGAAGGATTTCTACTTCGTC+AGG 0.426183 8_1:+55177059 None:intergenic
TTATTCCTTATTTGGGGATG+TGG 0.431251 8_1:-55178320 Msa1201900:CDS
GATGAATTAAAGCCTACAAT+TGG 0.432711 8_1:-55178993 Msa1201900:CDS
GGACAGATGATTTGATTCTT+GGG 0.434817 8_1:-55177091 Msa1201900:CDS
TGGAAGGAGCTCCTTGCCAC+TGG 0.438789 8_1:+55180100 None:intergenic
CAAATGAGTTTGAAGAGACT+TGG 0.439586 8_1:-55177931 Msa1201900:CDS
CTGAGAAACGGTCTCTTCAT+AGG 0.440271 8_1:+55178651 None:intergenic
CAAGTAAGCACATTGTGAAT+AGG 0.442114 8_1:-55177325 Msa1201900:CDS
GTATTCTCCGAGTACGTCCT+TGG 0.443355 8_1:+55180080 None:intergenic
CCGGATTAGTCGCACACGTT+TGG 0.447993 8_1:-55180011 Msa1201900:CDS
AATAGAAGCGCAACGACATA+AGG 0.451925 8_1:-55177693 Msa1201900:CDS
CTGTCAAGGTTAAAAGAAGA+AGG 0.460452 8_1:-55178782 Msa1201900:CDS
TCTGAATCCTAATGTTAACT+TGG 0.461262 8_1:-55177744 Msa1201900:CDS
AGGACGTACTCGGAGAATAC+CGG 0.461638 8_1:-55180077 Msa1201900:CDS
CTATGAAGAGACCGTTTCTC+AGG 0.462729 8_1:-55178650 Msa1201900:CDS
CATAGCTGTGTGGAGAAGGC+TGG 0.465632 8_1:-55177206 Msa1201900:CDS
GAGGATGTAACCAAGTTGCT+TGG 0.468884 8_1:-55180126 Msa1201900:CDS
GCGTATGACGTAGGTGAAGA+AGG 0.470056 8_1:-55178388 Msa1201900:CDS
TTCCCAGAGGGAACAACGCT+TGG 0.470256 8_1:-55180048 Msa1201900:CDS
TGATCGGTTATTATAAGAGT+TGG 0.470629 8_1:+55178121 None:intergenic
CCAAAATTTGCAAAGACTAA+AGG 0.474060 8_1:-55177035 Msa1201900:CDS
GATTAGTCGCACACGTTTGG+TGG 0.474902 8_1:-55180008 Msa1201900:CDS
CCAAACGTGTGCGACTAATC+CGG 0.479178 8_1:+55180011 None:intergenic
CTTGGCTAGTCGGCATGAGC+CGG 0.484502 8_1:-55180030 Msa1201900:CDS
GGGTTATTTGCCAAATAAGA+AGG 0.490320 8_1:-55178829 Msa1201900:CDS
GTTAAATGGGGTTGTTAACA+TGG 0.491983 8_1:-55177156 Msa1201900:CDS
GCCAAATAAGAAGGATGGTA+AGG 0.493986 8_1:-55178820 Msa1201900:CDS
TGACATAGCTGGCAATGTCT+TGG 0.496381 8_1:-55177270 Msa1201900:CDS
AGGTAATAGATTGTCGATGA+TGG 0.498326 8_1:+55178230 None:intergenic
CCACTGGAGCCCAAGCAACT+TGG 0.499645 8_1:+55180116 None:intergenic
TGCAAAATGTTTCAGGCTGA+AGG 0.500454 8_1:-55177404 Msa1201900:intron
AGGATGTAACCAAGTTGCTT+GGG 0.503747 8_1:-55180125 Msa1201900:CDS
TTCCTTGCAGACCTGAGAAA+CGG 0.505141 8_1:+55178639 None:intergenic
TCTATAGCCACTTTCATGGA+AGG 0.520478 8_1:+55178094 None:intergenic
TCAAGATCCTTCCATGAAAG+TGG 0.522014 8_1:-55178101 Msa1201900:CDS
CTTACATAGCTGTGTGGAGA+AGG 0.525967 8_1:-55177210 Msa1201900:CDS
AGCCAAGCGTTGTTCCCTCT+GGG 0.529197 8_1:+55180046 None:intergenic
CATCGACAATCTATTACCTT+CGG 0.531789 8_1:-55178226 Msa1201900:CDS
TGTTTGAGATTCGAAGCACT+TGG 0.538324 8_1:-55177856 Msa1201900:CDS
GTTAGAAAAGAATAAATGGT+TGG 0.538518 8_1:-55177885 Msa1201900:CDS
GGTAGTGGTAAAAGAATCAA+AGG 0.539060 8_1:-55177014 Msa1201900:CDS
TTCCCTCTGGGAATCGAACC+CGG 0.541454 8_1:+55180058 None:intergenic
CCAAGTTGCTTGGGCTCCAG+TGG 0.545505 8_1:-55180116 Msa1201900:CDS
AAGAATCAAATCATCTGTCC+TGG 0.550254 8_1:+55177094 None:intergenic
AGAAGGGCTTTAACAAGAGA+AGG 0.550276 8_1:-55178765 Msa1201900:CDS
TTTCATGGAAGGATCTTGAT+CGG 0.556444 8_1:+55178105 None:intergenic
TCTCCACACAGCTATGTAAG+TGG 0.567374 8_1:+55177213 None:intergenic
GGACGTACTCGGAGAATACC+GGG 0.567756 8_1:-55180076 Msa1201900:CDS
AAGTGTCTTTGAAATATGCT+GGG 0.568081 8_1:+55177831 None:intergenic
GCTCCTTCCAAGGACGTACT+CGG 0.570230 8_1:-55180087 Msa1201900:CDS
ATGATCTTTGGGGACAATTG+CGG 0.572883 8_1:+55176910 None:intergenic
TTTGCAAAGACTAAAGGTAG+TGG 0.573810 8_1:-55177029 Msa1201900:CDS
AACAATTGGATGGATTTGAA+GGG 0.574388 8_1:-55177130 Msa1201900:CDS
AAATGAGTTTGAAGAGACTT+GGG 0.576206 8_1:-55177930 Msa1201900:CDS
GGGAACAACGCTTGGCTAGT+CGG 0.577251 8_1:-55180040 Msa1201900:CDS
CTACTCATAGATTGTGCATG+TGG 0.578093 8_1:-55178054 Msa1201900:CDS
ACAAACTCATTTCTGATGTG+TGG 0.578358 8_1:-55177238 Msa1201900:CDS
TCTCCGAGTACGTCCTTGGA+AGG 0.578446 8_1:+55180084 None:intergenic
ACACAAAGTATGTGTCTACA+AGG 0.578783 8_1:+55177377 None:intergenic
GGAGAAGGCTGGAAAAGATA+AGG 0.578848 8_1:-55177195 Msa1201900:CDS
TGATGGTTTATCCCGGTGAA+AGG 0.578866 8_1:+55178247 None:intergenic
TACATTTGAAAGTTTCACAT+AGG 0.579229 8_1:+55181187 None:intergenic
GTGAAGCAAGTGGATGTGTA+TGG 0.586364 8_1:+55178673 None:intergenic
GACCGTTTCTCAGGTCTGCA+AGG 0.589066 8_1:-55178641 Msa1201900:CDS
TGTCAAGGTTAAAAGAAGAA+GGG 0.589394 8_1:-55178781 Msa1201900:CDS
TTGCTTGGGCTCCAGTGGCA+AGG 0.590024 8_1:-55180111 Msa1201900:CDS
AATCAAAGGTGGAAAAGAGA+AGG 0.592127 8_1:-55177000 Msa1201900:CDS
TATTTGCCAAATAAGAAGGA+TGG 0.592394 8_1:-55178825 Msa1201900:CDS
TTGTCGATGATGGTTTATCC+CGG 0.594835 8_1:+55178240 None:intergenic
AAGGGAGTTCTAAGAGAACC+AGG 0.594888 8_1:-55177112 Msa1201900:CDS
GCAAAGTGAATCTACTGTCA+AGG 0.595204 8_1:-55178796 Msa1201900:CDS
TTAAAGACGTAGAATAAGAG+AGG 0.597627 8_1:-55180145 Msa1201900:intron
TGTTATAAGTCCTACGCCGA+AGG 0.599087 8_1:+55178210 None:intergenic
GTGGCAAGGAGCTCCTTCCA+AGG 0.605596 8_1:-55180097 Msa1201900:CDS
CAATCTATTACCTTCGGCGT+AGG 0.610128 8_1:-55178220 Msa1201900:CDS
GTATTTGATACGTTAGCAGA+AGG 0.613843 8_1:-55178966 Msa1201900:CDS
AGTGGTAAAAGAATCAAAGG+TGG 0.614504 8_1:-55177011 Msa1201900:CDS
TCATACGCATAATAAAAGGA+TGG 0.620163 8_1:+55178403 None:intergenic
GTAAGCACATTGTGAATAGG+TGG 0.621765 8_1:-55177322 Msa1201900:CDS
CCAAAACTATTGTTGGAACG+TGG 0.638878 8_1:-55177635 Msa1201900:CDS
CTCTTCATAGGTGAAGCAAG+TGG 0.639442 8_1:+55178663 None:intergenic
AATTATGGAGATGATCTTTG+GGG 0.647744 8_1:+55176900 None:intergenic
TGTTGGAACGTGGTATCGAG+AGG 0.648329 8_1:-55177625 Msa1201900:CDS
GCAATACTTTGTAAGTCATG+CGG 0.649820 8_1:-55176954 Msa1201900:CDS
AGTTTCAAGTCATGTGTTTG+GGG 0.653537 8_1:-55177965 Msa1201900:CDS
ATTGCTTCTTGTGTTAAATG+GGG 0.659997 8_1:-55177168 Msa1201900:CDS
TACCGGGTTCGATTCCCAGA+GGG 0.664702 8_1:-55180060 Msa1201900:CDS
AGGTGTTTCCATGAATGATG+AGG 0.705279 8_1:-55178002 Msa1201900:CDS
ATACCGGGTTCGATTCCCAG+AGG 0.758788 8_1:-55180061 Msa1201900:CDS
GAACCACTTACATAGCTGTG+TGG 0.775450 8_1:-55177216 Msa1201900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+AGG - chr8_1:55178244-55178263 Msa1201900:CDS 0.0%
!! TATATATATATATATATATA+GGG - chr8_1:55178245-55178264 Msa1201900:CDS 0.0%
!! GTTATATAAAAAAATTGTAA+CGG + chr8_1:55177131-55177150 None:intergenic 10.0%
!!! ACAATTTTTTTATATAACTT+TGG - chr8_1:55177133-55177152 Msa1201900:CDS 10.0%
!! AAAAAAATTAATAAACACAT+TGG + chr8_1:55177403-55177422 None:intergenic 10.0%
!! TTATTATTATTAGATTAGAT+TGG - chr8_1:55177450-55177469 Msa1201900:intron 10.0%
!! TTATATTCATTAATGTAATG+TGG - chr8_1:55177170-55177189 Msa1201900:CDS 15.0%
!! AACTAATTATAATATACCTA+AGG + chr8_1:55178639-55178658 None:intergenic 15.0%
!! GGAAAACATAATAAATAAAA+AGG + chr8_1:55179017-55179036 None:intergenic 15.0%
!! TCTTCAATAAAATAATAGAA+AGG + chr8_1:55179038-55179057 None:intergenic 15.0%
!! ATATATTTCAACATGAATTA+TGG - chr8_1:55180531-55180550 Msa1201900:intron 15.0%
!! AAATGAGTAGAAAATGAATA+TGG - chr8_1:55176944-55176963 Msa1201900:CDS 20.0%
!! TAGAAAATGAATATGGAATT+AGG - chr8_1:55176951-55176970 Msa1201900:CDS 20.0%
!!! TAGACATTAATTTTTTTCGT+TGG - chr8_1:55177010-55177029 Msa1201900:CDS 20.0%
!!! GAACTGTTTTATAATTTGTT+AGG - chr8_1:55177095-55177114 Msa1201900:CDS 20.0%
!! TATTAGATAGAAATCAAAAG+AGG - chr8_1:55177486-55177505 Msa1201900:intron 20.0%
!!! AGTGTTAGAATTTTTTTTAG+AGG - chr8_1:55178176-55178195 Msa1201900:CDS 20.0%
!!! TTTTGTTCCTATTTTTTTGT+TGG - chr8_1:55178723-55178742 Msa1201900:CDS 20.0%
!! AATAGAACCAACAAAAAAAT+AGG + chr8_1:55178733-55178752 None:intergenic 20.0%
!! CCAAACTAAGAAAAAAAAAT+AGG + chr8_1:55178851-55178870 None:intergenic 20.0%
!!! CCTATTTTTTTTTCTTAGTT+TGG - chr8_1:55178848-55178867 Msa1201900:CDS 20.0%
!! TTTAATTCATCATCACAATT+TGG + chr8_1:55179097-55179116 None:intergenic 20.0%
!! ACTTATTAAAAGAACAATGT+GGG - chr8_1:55179554-55179573 Msa1201900:intron 20.0%
!! AGGAAAAATTATTCCTTATT+TGG - chr8_1:55179771-55179790 Msa1201900:intron 20.0%
!!! GGAAAAATTATTCCTTATTT+GGG - chr8_1:55179772-55179791 Msa1201900:intron 20.0%
!!! GAAAAATTATTCCTTATTTG+GGG - chr8_1:55179773-55179792 Msa1201900:intron 20.0%
!!! ATGTTTGTTTGAAAAGTTTT+TGG - chr8_1:55179935-55179954 Msa1201900:intron 20.0%
!!! AAAAAAGTTTCTGAAAAAGT+AGG - chr8_1:55180077-55180096 Msa1201900:CDS 20.0%
!! TTGAGTTAGAAAAGAATAAA+TGG - chr8_1:55180210-55180229 Msa1201900:intron 20.0%
!!! ATATTTCAAAGACACTTTTA+TGG - chr8_1:55180274-55180293 Msa1201900:intron 20.0%
!! AAAATAAGAAAGATGAAGAT+GGG - chr8_1:55180579-55180598 Msa1201900:intron 20.0%
! TACATTTGAAAGTTTCACAT+AGG + chr8_1:55176915-55176934 None:intergenic 25.0%
! AATTAGGTGTGGTTATAAAA+CGG - chr8_1:55176967-55176986 Msa1201900:CDS 25.0%
!!! TTTTCGTTGGTTATATTTAG+AGG - chr8_1:55177023-55177042 Msa1201900:CDS 25.0%
! GATAATATATGCAAGATTCA+AGG + chr8_1:55177236-55177255 None:intergenic 25.0%
! ACCAATTGAGTTAAATTCAT+AGG - chr8_1:55177266-55177285 Msa1201900:CDS 25.0%
! CCAATTGAGTTAAATTCATA+GGG - chr8_1:55177267-55177286 Msa1201900:CDS 25.0%
!! TTATCTAAGAGCTAGAATTT+TGG + chr8_1:55177586-55177605 None:intergenic 25.0%
!!! AACTTGTTTTCAAATTCCTT+AGG - chr8_1:55178620-55178639 Msa1201900:intron 25.0%
!!! ATTATAATTAGTTTGCCTTG+AGG - chr8_1:55178646-55178665 Msa1201900:CDS 25.0%
! ACAAAAAACAACTATCTCTT+AGG + chr8_1:55178709-55178728 None:intergenic 25.0%
!! TCATCGACTATAGATAAAAA+CGG - chr8_1:55179211-55179230 Msa1201900:intron 25.0%
!!! ATGCAAATGTTGTTTTCAAA+TGG - chr8_1:55179362-55179381 Msa1201900:intron 25.0%
!!! TGCAAATGTTGTTTTCAAAT+GGG - chr8_1:55179363-55179382 Msa1201900:intron 25.0%
!! CACATTGTTCTTTTAATAAG+TGG + chr8_1:55179555-55179574 None:intergenic 25.0%
! CACTTATTAAAAGAACAATG+TGG - chr8_1:55179553-55179572 Msa1201900:intron 25.0%
! CTTATTAAAAGAACAATGTG+GGG - chr8_1:55179555-55179574 Msa1201900:intron 25.0%
! TTATTAAAAGAACAATGTGG+GGG - chr8_1:55179556-55179575 Msa1201900:intron 25.0%
! ATTCAAAGTCTTTAAATCTC+TGG + chr8_1:55179626-55179645 None:intergenic 25.0%
! GTTAGAAAAGAATAAATGGT+TGG - chr8_1:55180214-55180233 Msa1201900:intron 25.0%
! AATTCAACCAAGTTAACATT+AGG + chr8_1:55180365-55180384 None:intergenic 25.0%
!!! ATGTTAACTTGGTTGAATTT+TGG - chr8_1:55180366-55180385 Msa1201900:intron 25.0%
! TTCTAAACCAAAACTATTGT+TGG - chr8_1:55180457-55180476 Msa1201900:intron 25.0%
! GAAAATAAGAAAGATGAAGA+TGG - chr8_1:55180578-55180597 Msa1201900:intron 25.0%
! TAAGATAATAGTGAGATCAA+TGG - chr8_1:55180620-55180639 Msa1201900:intron 25.0%
!!! ACACATACTTTGTGTTTTAA+AGG - chr8_1:55180730-55180749 Msa1201900:intron 25.0%
!!! CACATACTTTGTGTTTTAAA+GGG - chr8_1:55180731-55180750 Msa1201900:intron 25.0%
! AAATTGCTTCTTGTGTTAAA+TGG - chr8_1:55180929-55180948 Msa1201900:intron 25.0%
! AATTGCTTCTTGTGTTAAAT+GGG - chr8_1:55180930-55180949 Msa1201900:intron 25.0%
! TGTTAACATGGAAAAACAAT+TGG - chr8_1:55180955-55180974 Msa1201900:intron 25.0%
AATGAATATGGAATTAGGTG+TGG - chr8_1:55176956-55176975 Msa1201900:CDS 30.0%
ATTTCTTACACTATCACCAT+CGG + chr8_1:55177073-55177092 None:intergenic 30.0%
! ATGGTGATAGTGTAAGAAAT+TGG - chr8_1:55177073-55177092 Msa1201900:CDS 30.0%
!!! TTTTTTTCTAGTGCGATTAC+AGG - chr8_1:55177202-55177221 Msa1201900:CDS 30.0%
AACTCAATTGGTAAAGACAA+TGG + chr8_1:55177258-55177277 None:intergenic 30.0%
CCCTATGAATTTAACTCAAT+TGG + chr8_1:55177270-55177289 None:intergenic 30.0%
GTGACTCTCTCAAAAAAAAA+AGG - chr8_1:55177302-55177321 Msa1201900:CDS 30.0%
ATAGAAATCAAAAGAGGATG+TGG - chr8_1:55177492-55177511 Msa1201900:intron 30.0%
TCATTCAATCGAATTAAGAG+AGG - chr8_1:55177530-55177549 Msa1201900:intron 30.0%
AATCATAGTACACGACTAAA+GGG - chr8_1:55177837-55177856 Msa1201900:CDS 30.0%
TTAAAGACGTAGAATAAGAG+AGG - chr8_1:55177954-55177973 Msa1201900:CDS 30.0%
TCTAAACTTGAGTTAACCTT+AGG + chr8_1:55178224-55178243 None:intergenic 30.0%
! AGAGGGATTTTTAAATGAGA+GGG - chr8_1:55178333-55178352 Msa1201900:CDS 30.0%
TTCAAACTGATGTATTTGGT+TGG + chr8_1:55178540-55178559 None:intergenic 30.0%
CCAATTCAAACTGATGTATT+TGG + chr8_1:55178544-55178563 None:intergenic 30.0%
CCAAATACATCAGTTTGAAT+TGG - chr8_1:55178541-55178560 Msa1201900:intron 30.0%
AACAATAATGTTGAACCTCA+AGG + chr8_1:55178664-55178683 None:intergenic 30.0%
GATGAATTAAAGCCTACAAT+TGG - chr8_1:55179106-55179125 Msa1201900:intron 30.0%
TCAAATACTTGTCCAATTGT+AGG + chr8_1:55179121-55179140 None:intergenic 30.0%
!! TATTTTGTTTGCTCGAAAGA+GGG - chr8_1:55179250-55179269 Msa1201900:intron 30.0%
TATTTGCCAAATAAGAAGGA+TGG - chr8_1:55179274-55179293 Msa1201900:intron 30.0%
TGTCAAGGTTAAAAGAAGAA+GGG - chr8_1:55179318-55179337 Msa1201900:intron 30.0%
!!! AAATGTTGTTTTCAAATGGG+TGG - chr8_1:55179366-55179385 Msa1201900:intron 30.0%
!!! AATGTTGTTTTCAAATGGGT+GGG - chr8_1:55179367-55179386 Msa1201900:intron 30.0%
TCATACGCATAATAAAAGGA+TGG + chr8_1:55179699-55179718 None:intergenic 30.0%
TACGTCATACGCATAATAAA+AGG + chr8_1:55179703-55179722 None:intergenic 30.0%
! TTTTATTATGCGTATGACGT+AGG - chr8_1:55179702-55179721 Msa1201900:intron 30.0%
!! TGAAAAGTTTTTGGAAGCAA+TGG - chr8_1:55179944-55179963 Msa1201900:intron 30.0%
!! GAAAAGTTTTTGGAAGCAAT+GGG - chr8_1:55179945-55179964 Msa1201900:intron 30.0%
TGATCGGTTATTATAAGAGT+TGG + chr8_1:55179981-55180000 None:intergenic 30.0%
!! ATTTTCTATAGCCACTTTCA+TGG + chr8_1:55180012-55180031 None:intergenic 30.0%
! AAAGTTTCAAGTCATGTGTT+TGG - chr8_1:55180132-55180151 Msa1201900:CDS 30.0%
! AAGTTTCAAGTCATGTGTTT+GGG - chr8_1:55180133-55180152 Msa1201900:CDS 30.0%
AAATGAGTTTGAAGAGACTT+GGG - chr8_1:55180169-55180188 Msa1201900:intron 30.0%
!! AAGTGTCTTTGAAATATGCT+GGG + chr8_1:55180271-55180290 None:intergenic 30.0%
!! AAAGTGTCTTTGAAATATGC+TGG + chr8_1:55180272-55180291 None:intergenic 30.0%
GAAAGTGAGAATTCTTTCTA+TGG - chr8_1:55180326-55180345 Msa1201900:intron 30.0%
TCTGAATCCTAATGTTAACT+TGG - chr8_1:55180355-55180374 Msa1201900:intron 30.0%
ATTGCTTCTTGTGTTAAATG+GGG - chr8_1:55180931-55180950 Msa1201900:intron 30.0%
AACATGGAAAAACAATTGGA+TGG - chr8_1:55180959-55180978 Msa1201900:intron 30.0%
! AAACAATTGGATGGATTTGA+AGG - chr8_1:55180968-55180987 Msa1201900:intron 30.0%
! AACAATTGGATGGATTTGAA+GGG - chr8_1:55180969-55180988 Msa1201900:intron 30.0%
!! TTAGTCTTTGCAAATTTTGG+TGG + chr8_1:55181064-55181083 None:intergenic 30.0%
!! CCTTTAGTCTTTGCAAATTT+TGG + chr8_1:55181067-55181086 None:intergenic 30.0%
CCAAAATTTGCAAAGACTAA+AGG - chr8_1:55181064-55181083 Msa1201900:intron 30.0%
TTCAATCGAATTAAGAGAGG+CGG - chr8_1:55177533-55177552 Msa1201900:intron 35.0%
! AGGCGGTAAAACTTTTTATG+AGG - chr8_1:55177550-55177569 Msa1201900:intron 35.0%
GAATCATAGTACACGACTAA+AGG - chr8_1:55177836-55177855 Msa1201900:CDS 35.0%
ATCATAGTACACGACTAAAG+GGG - chr8_1:55177838-55177857 Msa1201900:CDS 35.0%
GAAATAATCACAATGCCACT+GGG - chr8_1:55177861-55177880 Msa1201900:CDS 35.0%
CATTATTTACTCATTCCCAG+TGG + chr8_1:55177879-55177898 None:intergenic 35.0%
ATATGCACAATTCAAGCCTA+AGG - chr8_1:55178205-55178224 Msa1201900:CDS 35.0%
! GAGAGGGATTTTTAAATGAG+AGG - chr8_1:55178332-55178351 Msa1201900:CDS 35.0%
! TTTTTAAATGAGAGGGTGAG+AGG - chr8_1:55178340-55178359 Msa1201900:CDS 35.0%
GAGGATTAAATAGTGGTCAT+TGG - chr8_1:55178359-55178378 Msa1201900:CDS 35.0%
! TGGTCATTGGATTAGATAGA+TGG - chr8_1:55178372-55178391 Msa1201900:CDS 35.0%
AAACTGATGTATTTGGTTGG+AGG + chr8_1:55178537-55178556 None:intergenic 35.0%
! AGTTGATGTATCTTTGTCCA+TGG + chr8_1:55178604-55178623 None:intergenic 35.0%
AACCACCTAAGATTAATGCA+GGG + chr8_1:55178909-55178928 None:intergenic 35.0%
AAACCACCTAAGATTAATGC+AGG + chr8_1:55178910-55178929 None:intergenic 35.0%
GTATTTGATACGTTAGCAGA+AGG - chr8_1:55179133-55179152 Msa1201900:intron 35.0%
GAAAAATATGCACTCTCTGT+CGG - chr8_1:55179169-55179188 Msa1201900:intron 35.0%
!! GTATTTTGTTTGCTCGAAAG+AGG - chr8_1:55179249-55179268 Msa1201900:intron 35.0%
GGGTTATTTGCCAAATAAGA+AGG - chr8_1:55179270-55179289 Msa1201900:intron 35.0%
TCCTTACCATCCTTCTTATT+TGG + chr8_1:55179283-55179302 None:intergenic 35.0%
CTGTCAAGGTTAAAAGAAGA+AGG - chr8_1:55179317-55179336 Msa1201900:intron 35.0%
!!! ATGTTGTTTTCAAATGGGTG+GGG - chr8_1:55179368-55179387 Msa1201900:intron 35.0%
! TTATTCCTTATTTGGGGATG+TGG - chr8_1:55179779-55179798 Msa1201900:intron 35.0%
! TTGATTTTTGCACCTTTCAC+CGG - chr8_1:55179840-55179859 Msa1201900:intron 35.0%
AGGTAATAGATTGTCGATGA+TGG + chr8_1:55179872-55179891 None:intergenic 35.0%
CATCGACAATCTATTACCTT+CGG - chr8_1:55179873-55179892 Msa1201900:intron 35.0%
TTTCATGGAAGGATCTTGAT+CGG + chr8_1:55179997-55180016 None:intergenic 35.0%
GAATTCATCCTCATCATTCA+TGG + chr8_1:55180108-55180127 None:intergenic 35.0%
! AGTTTCAAGTCATGTGTTTG+GGG - chr8_1:55180134-55180153 Msa1201900:CDS 35.0%
CAAGTCTCTTCAAACTCATT+TGG + chr8_1:55180170-55180189 None:intergenic 35.0%
CAAATGAGTTTGAAGAGACT+TGG - chr8_1:55180168-55180187 Msa1201900:intron 35.0%
! TTCAAAGACACTTTTATGGC+AGG - chr8_1:55180278-55180297 Msa1201900:intron 35.0%
! TCAAAGACACTTTTATGGCA+GGG - chr8_1:55180279-55180298 Msa1201900:intron 35.0%
TAAGAAAGATGAAGATGGGA+TGG - chr8_1:55180583-55180602 Msa1201900:intron 35.0%
TTGCTCATGCAAAATGTTTC+AGG - chr8_1:55180688-55180707 Msa1201900:intron 35.0%
ACACAAAGTATGTGTCTACA+AGG + chr8_1:55180725-55180744 None:intergenic 35.0%
CTATTCACAATGTGCTTACT+TGG + chr8_1:55180776-55180795 None:intergenic 35.0%
CAAGTAAGCACATTGTGAAT+AGG - chr8_1:55180774-55180793 Msa1201900:intron 35.0%
!!! ACACCTATTTTTGACATAGC+TGG - chr8_1:55180818-55180837 Msa1201900:intron 35.0%
TTGCCAGCTATGTCAAAAAT+AGG + chr8_1:55180824-55180843 None:intergenic 35.0%
ACAAACTCATTTCTGATGTG+TGG - chr8_1:55180861-55180880 Msa1201900:intron 35.0%
GTTAAATGGGGTTGTTAACA+TGG - chr8_1:55180943-55180962 Msa1201900:intron 35.0%
AAGAATCAAATCATCTGTCC+TGG + chr8_1:55181008-55181027 None:intergenic 35.0%
AGGACAGATGATTTGATTCT+TGG - chr8_1:55181007-55181026 Msa1201900:intron 35.0%
GGACAGATGATTTGATTCTT+GGG - chr8_1:55181008-55181027 Msa1201900:intron 35.0%
TTCTACTTCGTCAGGAATAT+TGG + chr8_1:55181035-55181054 None:intergenic 35.0%
!! TCTTTGCAAATTTTGGTGGA+AGG + chr8_1:55181060-55181079 None:intergenic 35.0%
TTTGCAAAGACTAAAGGTAG+TGG - chr8_1:55181070-55181089 Msa1201900:intron 35.0%
! GGTAGTGGTAAAAGAATCAA+AGG - chr8_1:55181085-55181104 Msa1201900:intron 35.0%
AGTGGTAAAAGAATCAAAGG+TGG - chr8_1:55181088-55181107 Msa1201900:intron 35.0%
AATCAAAGGTGGAAAAGAGA+AGG - chr8_1:55181099-55181118 Msa1201900:intron 35.0%
GCAATACTTTGTAAGTCATG+CGG - chr8_1:55181145-55181164 Msa1201900:intron 35.0%
TAGGTGTGGTTATAAAACGG+TGG - chr8_1:55176970-55176989 Msa1201900:CDS 40.0%
AGGTGTGGTTATAAAACGGT+GGG - chr8_1:55176971-55176990 Msa1201900:CDS 40.0%
TCATAGTACACGACTAAAGG+GGG - chr8_1:55177839-55177858 Msa1201900:CDS 40.0%
GGAAATAATCACAATGCCAC+TGG - chr8_1:55177860-55177879 Msa1201900:CDS 40.0%
AGGATGTAACCAAGTTGCTT+GGG - chr8_1:55177974-55177993 Msa1201900:CDS 40.0%
AGGCTTGAATTGTGCATATG+TGG + chr8_1:55178204-55178223 None:intergenic 40.0%
TAGGGGATGTTTCAAATGAG+AGG - chr8_1:55178315-55178334 Msa1201900:CDS 40.0%
AGGGGATGTTTCAAATGAGA+GGG - chr8_1:55178316-55178335 Msa1201900:CDS 40.0%
AGGGTGAGAGGATTAAATAG+TGG - chr8_1:55178352-55178371 Msa1201900:CDS 40.0%
GGTCAGTAATGAGAAGAACA+TGG + chr8_1:55178492-55178511 None:intergenic 40.0%
GTTACGTTCATCATTCTCCA+TGG - chr8_1:55178584-55178603 Msa1201900:intron 40.0%
AGAAGCCCTGCATTAATCTT+AGG - chr8_1:55178901-55178920 Msa1201900:CDS 40.0%
GCCAAATAAGAAGGATGGTA+AGG - chr8_1:55179279-55179298 Msa1201900:intron 40.0%
GCAAAGTGAATCTACTGTCA+AGG - chr8_1:55179303-55179322 Msa1201900:intron 40.0%
! AGAAGGGCTTTAACAAGAGA+AGG - chr8_1:55179334-55179353 Msa1201900:intron 40.0%
!!! TGTTGTTTTCAAATGGGTGG+GGG - chr8_1:55179369-55179388 Msa1201900:intron 40.0%
TGTGGGGGTTATGAAAATGT+TGG - chr8_1:55179571-55179590 Msa1201900:intron 40.0%
CCCAAAAAACATGCTTCAGT+CGG + chr8_1:55179737-55179756 None:intergenic 40.0%
!!! CCGACTGAAGCATGTTTTTT+GGG - chr8_1:55179734-55179753 Msa1201900:intron 40.0%
!!! AAGCATGTTTTTTGGGCAGA+TGG - chr8_1:55179741-55179760 Msa1201900:intron 40.0%
TTTGGGCAGATGGTATTTGT+AGG - chr8_1:55179751-55179770 Msa1201900:intron 40.0%
TGAAACCACATCCCCAAATA+AGG + chr8_1:55179787-55179806 None:intergenic 40.0%
! TGATTTTTGCACCTTTCACC+GGG - chr8_1:55179841-55179860 Msa1201900:intron 40.0%
! TTGTCGATGATGGTTTATCC+CGG + chr8_1:55179862-55179881 None:intergenic 40.0%
!! AAGTTTTTGGAAGCAATGGG+CGG - chr8_1:55179948-55179967 Msa1201900:intron 40.0%
TCAAGATCCTTCCATGAAAG+TGG - chr8_1:55179998-55180017 Msa1201900:CDS 40.0%
! TCTATAGCCACTTTCATGGA+AGG + chr8_1:55180008-55180027 None:intergenic 40.0%
CTACTCATAGATTGTGCATG+TGG - chr8_1:55180045-55180064 Msa1201900:CDS 40.0%
AGGTGTTTCCATGAATGATG+AGG - chr8_1:55180097-55180116 Msa1201900:CDS 40.0%
!! CTTGGGTGTTTTTGATGACA+AGG - chr8_1:55180186-55180205 Msa1201900:intron 40.0%
! TGTTTGAGATTCGAAGCACT+TGG - chr8_1:55180243-55180262 Msa1201900:intron 40.0%
! CAAAGACACTTTTATGGCAG+GGG - chr8_1:55180280-55180299 Msa1201900:intron 40.0%
! AATAGAAGCGCAACGACATA+AGG - chr8_1:55180406-55180425 Msa1201900:intron 40.0%
! CCACGTTCCAACAATAGTTT+TGG + chr8_1:55180467-55180486 None:intergenic 40.0%
CCAAAACTATTGTTGGAACG+TGG - chr8_1:55180464-55180483 Msa1201900:intron 40.0%
! TGAATTATGGATTGCATGCG+TGG - chr8_1:55180544-55180563 Msa1201900:intron 40.0%
TGCAAAATGTTTCAGGCTGA+AGG - chr8_1:55180695-55180714 Msa1201900:intron 40.0%
GTAAGCACATTGTGAATAGG+TGG - chr8_1:55180777-55180796 Msa1201900:intron 40.0%
! ATGATCTTTGGGGACAATTG+CGG + chr8_1:55181192-55181211 None:intergenic 40.0%
GAGACACGTTCAATATCCGA+TGG - chr8_1:55177054-55177073 Msa1201900:CDS 45.0%
!! GAGCTAGAATTTTGGCGATG+TGG + chr8_1:55177578-55177597 None:intergenic 45.0%
GAGGATGTAACCAAGTTGCT+TGG - chr8_1:55177973-55177992 Msa1201900:CDS 45.0%
!! TTGGTTCTATTTCTGTCCCG+TGG - chr8_1:55178742-55178761 Msa1201900:CDS 45.0%
CAACAACCAAGTAGAACCAC+GGG + chr8_1:55178761-55178780 None:intergenic 45.0%
CCAACAACCAAGTAGAACCA+CGG + chr8_1:55178762-55178781 None:intergenic 45.0%
AGCCCTGCATTAATCTTAGG+TGG - chr8_1:55178904-55178923 Msa1201900:CDS 45.0%
ATAAAAACGGCGTGAAGCGT+TGG - chr8_1:55179224-55179243 Msa1201900:intron 45.0%
GTGAAGCAAGTGGATGTGTA+TGG + chr8_1:55179429-55179448 None:intergenic 45.0%
CTCTTCATAGGTGAAGCAAG+TGG + chr8_1:55179439-55179458 None:intergenic 45.0%
CTGAGAAACGGTCTCTTCAT+AGG + chr8_1:55179451-55179470 None:intergenic 45.0%
CTATGAAGAGACCGTTTCTC+AGG - chr8_1:55179449-55179468 Msa1201900:intron 45.0%
TTCCTTGCAGACCTGAGAAA+CGG + chr8_1:55179463-55179482 None:intergenic 45.0%
!!! GCCGACTGAAGCATGTTTTT+TGG - chr8_1:55179733-55179752 Msa1201900:intron 45.0%
TGATGGTTTATCCCGGTGAA+AGG + chr8_1:55179855-55179874 None:intergenic 45.0%
CAATCTATTACCTTCGGCGT+AGG - chr8_1:55179879-55179898 Msa1201900:intron 45.0%
TGTTATAAGTCCTACGCCGA+AGG + chr8_1:55179892-55179911 None:intergenic 45.0%
TGACATAGCTGGCAATGTCT+TGG - chr8_1:55180829-55180848 Msa1201900:intron 45.0%
GAACCACTTACATAGCTGTG+TGG - chr8_1:55180883-55180902 Msa1201900:intron 45.0%
TCTCCACACAGCTATGTAAG+TGG + chr8_1:55180889-55180908 None:intergenic 45.0%
CTTACATAGCTGTGTGGAGA+AGG - chr8_1:55180889-55180908 Msa1201900:intron 45.0%
GGAGAAGGCTGGAAAAGATA+AGG - chr8_1:55180904-55180923 Msa1201900:intron 45.0%
!! AAGGGAGTTCTAAGAGAACC+AGG - chr8_1:55180987-55181006 Msa1201900:intron 45.0%
GGAAGGATTTCTACTTCGTC+AGG + chr8_1:55181043-55181062 None:intergenic 45.0%
!! ATATATATATATATATATAG+GGG - chr8_1:55178298-55178317 Msa1201900:CDS 5.0%
!!! ATATTTATTTTGTTAATTTT+AGG - chr8_1:55179057-55179076 Msa1201900:intron 5.0%
GTATTCTCCGAGTACGTCCT+TGG + chr8_1:55178022-55178041 None:intergenic 50.0%
AGGACGTACTCGGAGAATAC+CGG - chr8_1:55178022-55178041 Msa1201900:CDS 50.0%
CCAAACGTGTGCGACTAATC+CGG + chr8_1:55178091-55178110 None:intergenic 50.0%
! GATTAGTCGCACACGTTTGG+TGG - chr8_1:55178091-55178110 Msa1201900:CDS 50.0%
! ACGTTTGGTGGTTCGGAAAC+TGG - chr8_1:55178103-55178122 Msa1201900:CDS 50.0%
GCAACGCGCGTATCAGAAAT+TGG + chr8_1:55178444-55178463 None:intergenic 50.0%
GAAGTGAGAGGGAAGTGAGA+AGG + chr8_1:55178513-55178532 None:intergenic 50.0%
TGGTTGGAGGTGAAGTGAGA+GGG + chr8_1:55178524-55178543 None:intergenic 50.0%
TTGGTTGGAGGTGAAGTGAG+AGG + chr8_1:55178525-55178544 None:intergenic 50.0%
! TTCTGTCCCGTGGTTCTACT+TGG - chr8_1:55178752-55178771 Msa1201900:CDS 50.0%
! CCGTGGTTCTACTTGGTTGT+TGG - chr8_1:55178759-55178778 Msa1201900:CDS 50.0%
! GTTTTCAAATGGGTGGGGGA+AGG - chr8_1:55179373-55179392 Msa1201900:intron 50.0%
GCGTATGACGTAGGTGAAGA+AGG - chr8_1:55179711-55179730 Msa1201900:intron 50.0%
! TGTTGGAACGTGGTATCGAG+AGG - chr8_1:55180474-55180493 Msa1201900:intron 50.0%
! TGGATTGCATGCGTGGATTG+TGG - chr8_1:55180551-55180570 Msa1201900:intron 50.0%
GCTCCTTCCAAGGACGTACT+CGG - chr8_1:55178012-55178031 Msa1201900:CDS 55.0%
TCTCCGAGTACGTCCTTGGA+AGG + chr8_1:55178018-55178037 None:intergenic 55.0%
GGACGTACTCGGAGAATACC+GGG - chr8_1:55178023-55178042 Msa1201900:CDS 55.0%
ATACCGGGTTCGATTCCCAG+AGG - chr8_1:55178038-55178057 Msa1201900:CDS 55.0%
TACCGGGTTCGATTCCCAGA+GGG - chr8_1:55178039-55178058 Msa1201900:CDS 55.0%
! TTCCCTCTGGGAATCGAACC+CGG + chr8_1:55178044-55178063 None:intergenic 55.0%
TTCCCAGAGGGAACAACGCT+TGG - chr8_1:55178051-55178070 Msa1201900:CDS 55.0%
! AGCCAAGCGTTGTTCCCTCT+GGG + chr8_1:55178056-55178075 None:intergenic 55.0%
! TAGCCAAGCGTTGTTCCCTC+TGG + chr8_1:55178057-55178076 None:intergenic 55.0%
GGGAACAACGCTTGGCTAGT+CGG - chr8_1:55178059-55178078 Msa1201900:CDS 55.0%
!! CCGGATTAGTCGCACACGTT+TGG - chr8_1:55178088-55178107 Msa1201900:CDS 55.0%
! GTCGCACACGTTTGGTGGTT+CGG - chr8_1:55178096-55178115 Msa1201900:CDS 55.0%
GACCGTTTCTCAGGTCTGCA+AGG - chr8_1:55179458-55179477 Msa1201900:intron 55.0%
CATAGCTGTGTGGAGAAGGC+TGG - chr8_1:55180893-55180912 Msa1201900:intron 55.0%
CCACTGGAGCCCAAGCAACT+TGG + chr8_1:55177986-55178005 None:intergenic 60.0%
CCAAGTTGCTTGGGCTCCAG+TGG - chr8_1:55177983-55178002 Msa1201900:CDS 60.0%
TTGCTTGGGCTCCAGTGGCA+AGG - chr8_1:55177988-55178007 Msa1201900:CDS 60.0%
TGGAAGGAGCTCCTTGCCAC+TGG + chr8_1:55178002-55178021 None:intergenic 60.0%
GTGGCAAGGAGCTCCTTCCA+AGG - chr8_1:55178002-55178021 Msa1201900:CDS 60.0%
! CTTGGCTAGTCGGCATGAGC+CGG - chr8_1:55178069-55178088 Msa1201900:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 55176902 55181219 55176902 ID=Msa1201900;Name=Msa1201900
chr8_1 mRNA 55176902 55181219 55176902 ID=Msa1201900-mRNA-1;Parent=Msa1201900;Name=Msa1201900-mRNA-1;_AED=0.27;_eAED=0.29;_QI=0|0|0|0.6|1|1|5|0|642
chr8_1 exon 55181190 55181219 55181190 ID=Msa1201900-mRNA-1:exon:17853;Parent=Msa1201900-mRNA-1
chr8_1 exon 55179997 55180155 55179997 ID=Msa1201900-mRNA-1:exon:17852;Parent=Msa1201900-mRNA-1
chr8_1 exon 55178638 55179042 55178638 ID=Msa1201900-mRNA-1:exon:17851;Parent=Msa1201900-mRNA-1
chr8_1 exon 55177613 55178437 55177613 ID=Msa1201900-mRNA-1:exon:17850;Parent=Msa1201900-mRNA-1
chr8_1 exon 55176902 55177411 55176902 ID=Msa1201900-mRNA-1:exon:17849;Parent=Msa1201900-mRNA-1
chr8_1 CDS 55181190 55181219 55181190 ID=Msa1201900-mRNA-1:cds;Parent=Msa1201900-mRNA-1
chr8_1 CDS 55179997 55180155 55179997 ID=Msa1201900-mRNA-1:cds;Parent=Msa1201900-mRNA-1
chr8_1 CDS 55178638 55179042 55178638 ID=Msa1201900-mRNA-1:cds;Parent=Msa1201900-mRNA-1
chr8_1 CDS 55177613 55178437 55177613 ID=Msa1201900-mRNA-1:cds;Parent=Msa1201900-mRNA-1
chr8_1 CDS 55176902 55177411 55176902 ID=Msa1201900-mRNA-1:cds;Parent=Msa1201900-mRNA-1
Gene Sequence

>Msa1201900

ATGAGTAGTGCCTATGTGAAACTTTCAAATAATAAGAGAGGATGTAACCAAGTTGCTTGGGCTCCAGTGGCAAGGAGCTCCTTCCAAGGACGTACTCGGAGAATACCGGGTTCGATTCCCAGAGGGAACAACGCTTGGCTAGTCGGCATGAGCCGGATTAGTCGCACACGTTTGGTGGTTCGGAAACTGGAATATGAATGTGTGCCAAATTGTGATGATGAATTAAAGCCTACAATTGGACAAGTATTTGATACGTTAGCAGAAGGTAAAAAAATTTACGAAAAATATGCACTCTCTGTCGGATTTAGCGTGCGTTCATCATCATCGACTATAGATAAAAACGGCGTGAAGCGTTGGAAGTATTTTGTTTGCTCGAAAGAGGGTTATTTGCCAAATAAGAAGGATGGTAAGGAGCAAAGTGAATCTACTGTCAAGGTTAAAAGAAGAAGGGCTTTAACAAGAGAAGGATGCAATGCAAATGTTGTTTTCAAATGGGTGGGGGAAGGAAAGTATGAGATAGCTCGATTTCATGAAAGCCATACACATCCACTTGCTTCACCTATGAAGAGACCGTTTCTCAGGTCTGCAAGGAAAAAAGAAGTTAATCCATCCTTTTATTATGCGTATGACGTAGGTGAAGAAGGCCGACTGAAGCATGTTTTTTGGGCAGATGGTATTTGTAGGAAAAATTATTCCTTATTTGGGGATGTGGTTTCATTTGATACTACGTATCAAACAAATAAATATCATTTGATTTTTGCACCTTTCACCGGGATAAACCATCATCGACAATCTATTACCTTCGGCGTAGGACTTATAACAAATGAGAAAAGTGATTCATTCGTATGTTTGTTTGAAAAGTTTTTGGAAGCAATGGGCGGACATAAGCCAACTCTTATAATAACCGATCAAGATCCTTCCATGAAAGTGGCTATAGAAAATATGTTTGATTCTTCTACTCATAGATTGTGCATGTGGCATATCATGAAAAAAGTTTCTGAAAAAGTAGGTGTTTCCATGAATGATGAGGATGAATTCAACAAAAGTTTCAAGTCATGTGTTTGGGGTTCAGAGACACCAAATGAGTTTGAAGAGACTTGGGTGTTTTTGATGACAAGGTTTGAGTTAGAAAAGAATAAATGGTTGGCACATATGTTTGAGATTCGAAGCACTTGGATCCCAGCATATTTCAAAGACACTTTTATGGCAGGGGTATTGAGAACAACATCAAGATCAGAAAGTGAGAATTCTTTCTATGGTAATTTTCTGAATCCTAATGTTAACTTGGTTGAATTTTGGATGAGATTTGATTCAGCAATAGAAGCGCAACGACATAAGGAGTTACTAGCTGATAATAACTCAATTCATTCTAAACCAAAACTATTGTTGGAACGTGGTATCGAGAGGCATGCAAGAGATGCTGAAGGAATACCTTGTAGACACATACTTTGTGTTTTAAAGGGAAAAAATTTCAATGAAATACCAAGTAAGCACATTGTGAATAGGTGGACTAAGTTTGCAAACAGAACACCTATTTTTGACATAGCTGGCAATGTCTTGGAAGAAGACAACAAACTCATTTCTGATGTGTGGAACCACTTACATAGCTGTGTGGAGAAGGCTGGAAAAGATAAGGAAAAATTGCTTCTTGTGTTAAATGGGGTTGTTAACATGGAAAAACAATTGGATGGATTTGAAGGGAGTTCTAAGAGAACCAGGACAGATGATTTGATTCTTGGGTCCAATATTCCTGACGAAGTAGAAATCCTTCCACCAAAATTTGCAAAGACTAAAGGTAGTGGTAAAAGAATCAAAGGTGGAAAAGAGAAGGCTATTGAACAACAACAAAAAAAAGCAATACTTTGTAAGTCATGCGGTGAGTATGTGCATCATGACAGCCGCAATTGTCCCCAAAGATCATCTCCATAA
Protein sequence

>Msa1201900

MSSAYVKLSNNKRGCNQVAWAPVARSSFQGRTRRIPGSIPRGNNAWLVGMSRISRTRLVVRKLEYECVPNCDDELKPTIGQVFDTLAEGKKIYEKYALSVGFSVRSSSSTIDKNGVKRWKYFVCSKEGYLPNKKDGKEQSESTVKVKRRRALTREGCNANVVFKWVGEGKYEIARFHESHTHPLASPMKRPFLRSARKKEVNPSFYYAYDVGEEGRLKHVFWADGICRKNYSLFGDVVSFDTTYQTNKYHLIFAPFTGINHHRQSITFGVGLITNEKSDSFVCLFEKFLEAMGGHKPTLIITDQDPSMKVAIENMFDSSTHRLCMWHIMKKVSEKVGVSMNDEDEFNKSFKSCVWGSETPNEFEETWVFLMTRFELEKNKWLAHMFEIRSTWIPAYFKDTFMAGVLRTTSRSESENSFYGNFLNPNVNLVEFWMRFDSAIEAQRHKELLADNNSIHSKPKLLLERGIERHARDAEGIPCRHILCVLKGKNFNEIPSKHIVNRWTKFANRTPIFDIAGNVLEEDNKLISDVWNHLHSCVEKAGKDKEKLLLVLNGVVNMEKQLDGFEGSSKRTRTDDLILGSNIPDEVEILPPKFAKTKGSGKRIKGGKEKAIEQQQKKAILCKSCGEYVHHDSRNCPQRSSP*