AlfalfaGEDB | Msa1202790

M. sativa cultivar zhongmu-4 / Msa1202790

KEGG: K21630
GO: GO:0000003 GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0040034 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090567 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000026 GO:2000112 GO:2000241 GO:2001141
PFAM: PF00320.30

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1202790	XP_003629440.1	87.552	241	21	3	1	235	1	238	1.48e-125	365

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1202790	sp\|Q8LC79\|GAT18_ARATH	39.100	289	93	13	20	235	17	295	3.58e-44	153

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa1202790	TF	C2C2-GATA

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1202790	MtrunA17_Chr8g0373231	87.552	241	21	3	1	235	1	238	1.37e-129	365
Msa1202790	MtrunA17_Chr5g0404131	55.285	246	78	11	1	225	71	305	4.35e-70	217
Msa1202790	MtrunA17_Chr1g0151461	59.322	59	21	2	115	173	179	234	1.26e-13	68.9
Msa1202790	MtrunA17_Chr7g0271861	50.847	59	19	1	122	170	19	77	1.87e-13	65.1
Msa1202790	MtrunA17_Chr4g0071301	55.385	65	27	2	90	154	159	221	2.11e-13	68.6
Msa1202790	MtrunA17_Chr4g0068031	67.568	37	12	0	125	161	30	66	9.68e-13	63.5
Msa1202790	MtrunA17_Chr2g0326771	30.719	153	89	4	20	157	98	248	1.00e-12	66.2
Msa1202790	MtrunA17_Chr1g0213161	48.148	54	28	0	104	157	131	184	2.65e-12	64.3
Msa1202790	MtrunA17_Chr4g0028961	56.098	41	18	0	117	157	224	264	5.23e-12	64.3
Msa1202790	MtrunA17_Chr1g0199671	56.250	48	15	1	110	157	233	274	1.39e-11	63.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1202790	AT3G50870.1	39.100	289	93	13	20	235	17	295	3.64e-45	153
Msa1202790	AT2G18380.1	49.686	159	65	5	23	179	1	146	3.02e-36	127
Msa1202790	AT4G36620.1	43.333	210	80	7	51	234	14	210	6.32e-35	124
Msa1202790	AT5G56860.1	64.000	50	15	2	111	158	215	263	2.41e-13	68.9
Msa1202790	AT4G26150.1	73.684	38	9	1	118	155	193	229	7.21e-13	67.4
Msa1202790	AT5G26930.1	68.571	35	11	0	127	161	28	62	8.08e-13	63.5
Msa1202790	AT5G49300.1	71.429	35	10	0	127	161	38	72	1.44e-12	63.5
Msa1202790	AT3G06740.1	71.429	35	10	0	127	161	43	77	2.57e-12	63.2
Msa1202790	AT3G54810.1	48.571	70	31	2	110	175	215	283	5.85e-12	64.7
Msa1202790	AT3G54810.2	48.571	70	31	2	110	175	215	283	5.85e-12	64.7

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Find 50 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGCGGCATAATGGAGTC+AGG	0.511807	8_1:+56472262	Msa1202790:CDS
AAGCAACGAGTAGTTAGAAT+TGG	0.404782	8_1:-56471547	None:intergenic
AATGATGATGATGTAGATGT+AGG	0.597026	8_1:+56472532	Msa1202790:three_prime_UTR
AATTAGCAAGAGAGGAGCGA+CGG	0.624431	8_1:-56471707	None:intergenic
ACACCACTTCTACACCCCTT+TGG	0.442678	8_1:+56471856	Msa1202790:CDS
ACGAGGACCATTCCTCCAAA+GGG	0.492453	8_1:-56471871	None:intergenic
ACTACAGCCGCGACTAACAG+CGG	0.603703	8_1:+56472247	Msa1202790:CDS
AGAGAGAAGAGCGAACGCCG+CGG	0.661922	8_1:+56472219	Msa1202790:CDS
AGCGACGGTTTCGTTTATCT+TGG	0.414787	8_1:-56471692	None:intergenic
AGTCACTATGCAATGCTTGC+GGG	0.430912	8_1:+56472179	Msa1202790:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCAAGCAAAGGAAACAATAT+TGG	+	chr8_1:56471783-56471802	Msa1202790:CDS	30.0%
TTTATAGTCAGTCTACTACA+AGG	-	chr8_1:56471958-56471977	None:intergenic	30.0%
GTAGACTGACTATAAATGTT+CGG	+	chr8_1:56471962-56471981	Msa1202790:intron	30.0%
TCTACAACAACAACAATTCA+TGG	+	chr8_1:56472290-56472309	Msa1202790:CDS	30.0%
GATTACACAAGATGAAACAT+TGG	+	chr8_1:56472436-56472455	Msa1202790:exon	30.0%
TCTTTCTGTTCTATTAACGT+AGG	-	chr8_1:56472504-56472523	None:intergenic	30.0%
TCAAGCAAAGGAAACAATAT+TGG	+	chr8_1:56471783-56471802	Msa1202790:CDS	30.0%
TTTATAGTCAGTCTACTACA+AGG	-	chr8_1:56471958-56471977	None:intergenic	30.0%
GTAGACTGACTATAAATGTT+CGG	+	chr8_1:56471962-56471981	Msa1202790:intron	30.0%
TCTACAACAACAACAATTCA+TGG	+	chr8_1:56472290-56472309	Msa1202790:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	56471393	56472826	56471393	ID=Msa1202790;Name=Msa1202790
chr8_1	mRNA	56471393	56472826	56471393	ID=Msa1202790-mRNA-1;Parent=Msa1202790;Name=Msa1202790-mRNA-1;_AED=0.00;_eAED=0.00;_QI=72\|1\|1\|1\|1\|1\|2\|376\|235
chr8_1	exon	56471393	56471902	56471393	ID=Msa1202790-mRNA-1:exon:18336;Parent=Msa1202790-mRNA-1
chr8_1	exon	56472181	56472826	56472181	ID=Msa1202790-mRNA-1:exon:18337;Parent=Msa1202790-mRNA-1
chr8_1	five_prime_UTR	56471393	56471464	56471393	ID=Msa1202790-mRNA-1:five_prime_utr;Parent=Msa1202790-mRNA-1
chr8_1	CDS	56471465	56471902	56471465	ID=Msa1202790-mRNA-1:cds;Parent=Msa1202790-mRNA-1
chr8_1	CDS	56472181	56472450	56472181	ID=Msa1202790-mRNA-1:cds;Parent=Msa1202790-mRNA-1
chr8_1	three_prime_UTR	56472451	56472826	56472451	ID=Msa1202790-mRNA-1:three_prime_utr;Parent=Msa1202790-mRNA-1

Gene Sequence

>Msa1202790

ATGATGCATCATTGTTGTAGTAGCTCTCAACAAGGTCACATAATGGGAGGAACATGCACATGTGGTATGTTTCATCCTCAAACCAATTCTAACTACTCGTTGCTTTACTCTAACTACCAACAAAATGATCATTATGATTTTGACCCTTACTCTTACACTACTACTCCATCTTCTTCTGTTGATTGCACACTCTCGCTTGCTACCCCTTCAACACGTTTATCTGAAGACCAAGATAAACGAAACCGTCGCTCCTCTCTTGCTAATTTTTTTTGTAGCAAATCTTCAAACACAAAACATAATTCTCAATCTCAATCTAAGTCAAGCAAAGGAAACAATATTGGTAGTAACTCTAACAATGATTCTCTTCTTTCTCGTCGATGTGCTAGCTGTGACACCACTTCTACACCCCTTTGGAGGAATGGTCCTCGTGGCCCAAAGTCACTATGCAATGCTTGCGGGATTAGATACAAGAAGGAAGAGAGAAGAGCGAACGCCGCGGTTGCCACTACAGCCGCGACTAACAGCGGCATAATGGAGTCAGGAAACTTCTACAACAACAACAATTCATGGTACTCACAACCACAGAGTCAAATGTATGGCAATGAGCTAAGTTTCATGGATGATTCAGATGCAGAATCAGAAAATGGCATTCCAAATTTCCTTTCTTGGAGACTCAACACAAGTCTTGTTCACGATTACACAAGATGA

Protein sequence

>Msa1202790

MMHHCCSSSQQGHIMGGTCTCGMFHPQTNSNYSLLYSNYQQNDHYDFDPYSYTTTPSSSVDCTLSLATPSTRLSEDQDKRNRRSSLANFFCSKSSNTKHNSQSQSKSSKGNNIGSNSNNDSLLSRRCASCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERRANAAVATTAATNSGIMESGNFYNNNNSWYSQPQSQMYGNELSFMDDSDAESENGIPNFLSWRLNTSLVHDYTR*