AlfalfaGEDB | Msa1202790

M. sativa cultivar zhongmu-4 / Msa1202790

KEGG: K21630
GO: GO:0000003 GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0040034 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090567 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000026 GO:2000112 GO:2000241 GO:2001141
PFAM: PF00320.30

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1202790	XP_003629440.1	87.552	241	21	3	1	235	1	238	1.48e-125	365

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1202790	sp\|Q8LC79\|GAT18_ARATH	39.100	289	93	13	20	235	17	295	3.58e-44	153

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification
Msa1202790	TF	C2C2-GATA

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1202790	MtrunA17_Chr8g0373231	87.552	241	21	3	1	235	1	238	1.37e-129	365
Msa1202790	MtrunA17_Chr5g0404131	55.285	246	78	11	1	225	71	305	4.35e-70	217
Msa1202790	MtrunA17_Chr1g0151461	59.322	59	21	2	115	173	179	234	1.26e-13	68.9
Msa1202790	MtrunA17_Chr7g0271861	50.847	59	19	1	122	170	19	77	1.87e-13	65.1
Msa1202790	MtrunA17_Chr4g0071301	55.385	65	27	2	90	154	159	221	2.11e-13	68.6
Msa1202790	MtrunA17_Chr4g0068031	67.568	37	12	0	125	161	30	66	9.68e-13	63.5
Msa1202790	MtrunA17_Chr2g0326771	30.719	153	89	4	20	157	98	248	1.00e-12	66.2
Msa1202790	MtrunA17_Chr1g0213161	48.148	54	28	0	104	157	131	184	2.65e-12	64.3
Msa1202790	MtrunA17_Chr4g0028961	56.098	41	18	0	117	157	224	264	5.23e-12	64.3
Msa1202790	MtrunA17_Chr1g0199671	56.250	48	15	1	110	157	233	274	1.39e-11	63.2
Msa1202790	MtrunA17_Chr3g0145121	51.111	45	22	0	113	157	203	247	1.58e-11	62.8
Msa1202790	MtrunA17_Chr8g0372291	45.455	55	30	0	103	157	196	250	8.44e-11	60.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1202790	AT3G50870.1	39.100	289	93	13	20	235	17	295	3.64e-45	153
Msa1202790	AT2G18380.1	49.686	159	65	5	23	179	1	146	3.02e-36	127
Msa1202790	AT4G36620.1	43.333	210	80	7	51	234	14	210	6.32e-35	124
Msa1202790	AT5G56860.1	64.000	50	15	2	111	158	215	263	2.41e-13	68.9
Msa1202790	AT4G26150.1	73.684	38	9	1	118	155	193	229	7.21e-13	67.4
Msa1202790	AT5G26930.1	68.571	35	11	0	127	161	28	62	8.08e-13	63.5
Msa1202790	AT5G49300.1	71.429	35	10	0	127	161	38	72	1.44e-12	63.5
Msa1202790	AT3G06740.1	71.429	35	10	0	127	161	43	77	2.57e-12	63.2
Msa1202790	AT3G54810.1	48.571	70	31	2	110	175	215	283	5.85e-12	64.7
Msa1202790	AT3G54810.2	48.571	70	31	2	110	175	215	283	5.85e-12	64.7
Msa1202790	AT1G08010.2	58.537	41	16	1	117	157	213	252	2.45e-11	62.8
Msa1202790	AT1G08010.1	58.537	41	16	1	117	157	213	252	2.45e-11	62.8
Msa1202790	AT1G08010.3	58.537	41	16	1	117	157	213	252	2.45e-11	62.8
Msa1202790	AT4G32890.1	38.272	81	47	1	80	157	149	229	4.60e-11	62.0
Msa1202790	AT4G34680.1	42.188	64	30	1	94	157	156	212	5.30e-11	61.2
Msa1202790	AT4G34680.2	42.188	64	30	1	94	157	156	212	5.30e-11	61.2
Msa1202790	AT3G20750.1	66.667	33	11	0	130	162	164	196	8.51e-11	60.1
Msa1202790	AT3G60530.1	40.964	83	41	2	80	157	111	190	9.45e-11	60.5

Find 50 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GCATTCCAAATTTCCTTTCT+TGG	0.186888	8_1:+56472389	Msa1202790:CDS
AGTCTCCAAGAAAGGAAATT+TGG	0.258564	8_1:-56472394	None:intergenic
CTCTGTCTTGCTTAAGAATA+TGG	0.262508	8_1:+56472671	Msa1202790:three_prime_UTR
TCAGATGCAGAATCAGAAAA+TGG	0.349796	8_1:+56472367	Msa1202790:CDS
GGAGTAGTAGTGTAAGAGTA+AGG	0.350842	8_1:-56471609	None:intergenic
TATTATGTTGCAATGTTGTA+TGG	0.378046	8_1:-56471394	None:intergenic
TCAAGCAAAGGAAACAATAT+TGG	0.387578	8_1:+56471783	Msa1202790:CDS
TCTACAACAACAACAATTCA+TGG	0.388097	8_1:+56472290	Msa1202790:CDS
AAGCAACGAGTAGTTAGAAT+TGG	0.404782	8_1:-56471547	None:intergenic
AGCGACGGTTTCGTTTATCT+TGG	0.414787	8_1:-56471692	None:intergenic
CGCGACTAACAGCGGCATAA+TGG	0.420708	8_1:+56472255	Msa1202790:CDS
AGTCACTATGCAATGCTTGC+GGG	0.430912	8_1:+56472179	Msa1202790:intron
ACACCACTTCTACACCCCTT+TGG	0.442678	8_1:+56471856	Msa1202790:CDS
TCTCAACAAGGTCACATAAT+GGG	0.447815	8_1:+56471489	Msa1202790:CDS
CTCTCAACAAGGTCACATAA+TGG	0.454874	8_1:+56471488	Msa1202790:CDS
CCACTTCTACACCCCTTTGG+AGG	0.484365	8_1:+56471859	Msa1202790:CDS
ACGAGGACCATTCCTCCAAA+GGG	0.492453	8_1:-56471871	None:intergenic
TGGCAATGAGCTAAGTTTCA+TGG	0.499631	8_1:+56472339	Msa1202790:CDS
TCTACACCCCTTTGGAGGAA+TGG	0.501186	8_1:+56471864	Msa1202790:CDS
TCTTCAGATAAACGTGTTGA+AGG	0.506795	8_1:-56471669	None:intergenic
GAGTAGTTAGAATTGGTTTG+AGG	0.511649	8_1:-56471540	None:intergenic
AACAGCGGCATAATGGAGTC+AGG	0.511807	8_1:+56472262	Msa1202790:CDS
GAGTAGTAGTGTAAGAGTAA+GGG	0.528552	8_1:-56471608	None:intergenic
TTGTGTTGAGTCTCCAAGAA+AGG	0.529190	8_1:-56472402	None:intergenic
CTTCAGATAAACGTGTTGAA+GGG	0.533289	8_1:-56471668	None:intergenic
GATGGTTATGGTCTCGTCAA+CGG	0.540505	8_1:+56472594	Msa1202790:three_prime_UTR
CAGTCACTATGCAATGCTTG+CGG	0.541543	8_1:+56472178	Msa1202790:intron
CACGAGGACCATTCCTCCAA+AGG	0.545071	8_1:-56471872	None:intergenic
TTGCCATACATTTGACTCTG+TGG	0.554705	8_1:-56472322	None:intergenic
GCTGTTAGTCGCGGCTGTAG+TGG	0.556331	8_1:-56472245	None:intergenic
GTGCAATCAACAGAAGAAGA+TGG	0.561538	8_1:-56471630	None:intergenic
CAACCACAGAGTCAAATGTA+TGG	0.561677	8_1:+56472319	Msa1202790:CDS
CCTCCAAAGGGGTGTAGAAG+TGG	0.563224	8_1:-56471859	None:intergenic
TCTTTCTGTTCTATTAACGT+AGG	0.574324	8_1:-56472501	None:intergenic
TTCAGATAAACGTGTTGAAG+GGG	0.588418	8_1:-56471667	None:intergenic
GATTACACAAGATGAAACAT+TGG	0.592007	8_1:+56472436	Msa1202790:exon
GAATGGTCCTCGTGGCCCAA+AGG	0.595177	8_1:+56471881	Msa1202790:CDS
AATGATGATGATGTAGATGT+AGG	0.597026	8_1:+56472532	Msa1202790:three_prime_UTR
CGCGGCTGTAGTGGCAACCG+CGG	0.597888	8_1:-56472236	None:intergenic
ACTACAGCCGCGACTAACAG+CGG	0.603703	8_1:+56472247	Msa1202790:CDS
TCTCAATCTAAGTCAAGCAA+AGG	0.604127	8_1:+56471771	Msa1202790:CDS
AATTAGCAAGAGAGGAGCGA+CGG	0.624431	8_1:-56471707	None:intergenic
ATGGGAGGAACATGCACATG+TGG	0.624656	8_1:+56471507	Msa1202790:CDS
TTGCGGGATTAGATACAAGA+AGG	0.629096	8_1:+56472195	Msa1202790:CDS
AGAGAGAAGAGCGAACGCCG+CGG	0.661922	8_1:+56472219	Msa1202790:CDS
CATTATGCCGCTGTTAGTCG+CGG	0.663535	8_1:-56472254	None:intergenic
CTTTGGAGGAATGGTCCTCG+TGG	0.675633	8_1:+56471873	Msa1202790:CDS
CAACAAGGTCACATAATGGG+AGG	0.680593	8_1:+56471492	Msa1202790:CDS
CGAGGACCATTCCTCCAAAG+GGG	0.705344	8_1:-56471870	None:intergenic
TGTTGTAGTAGCTCTCAACA+AGG	0.711133	8_1:+56471477	Msa1202790:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTAAGAATGTTTTGTAATAA+TGG	+	chr8_1:56472141-56472160	Msa1202790:intron	15.0%
!!!	TTAAGAATGTTTTGTAATAA+TGG	+	chr8_1:56472141-56472160	Msa1202790:intron	15.0%
!!!	AATCATAATGATCATTTTGT+TGG	-	chr8_1:56471584-56471603	None:intergenic	20.0%
!!!	AGTAATGTATTTTTACCTTT+GGG	-	chr8_1:56471899-56471918	None:intergenic	20.0%
!!!	TAGTAATGTATTTTTACCTT+TGG	-	chr8_1:56471900-56471919	None:intergenic	20.0%
!!	AAAAACATTTATAGTCTAGT+AGG	+	chr8_1:56471990-56472009	Msa1202790:intron	20.0%
!!	ATTATTAATAACAGTGACAT+TGG	-	chr8_1:56472074-56472093	None:intergenic	20.0%
!!!	AATCATAATGATCATTTTGT+TGG	-	chr8_1:56471584-56471603	None:intergenic	20.0%
!!!	AGTAATGTATTTTTACCTTT+GGG	-	chr8_1:56471899-56471918	None:intergenic	20.0%
!!!	TAGTAATGTATTTTTACCTT+TGG	-	chr8_1:56471900-56471919	None:intergenic	20.0%
!!	AAAAACATTTATAGTCTAGT+AGG	+	chr8_1:56471990-56472009	Msa1202790:intron	20.0%
!!	ATTATTAATAACAGTGACAT+TGG	-	chr8_1:56472074-56472093	None:intergenic	20.0%
!	TATTATGTTGCAATGTTGTA+TGG	-	chr8_1:56471397-56471416	None:intergenic	25.0%
!	ACAAAAAAAATTAGCAAGAG+AGG	-	chr8_1:56471718-56471737	None:intergenic	25.0%
!	GAACAAGATGAAAAAGAAAA+AGG	-	chr8_1:56472638-56472657	None:intergenic	25.0%
!	TATTATGTTGCAATGTTGTA+TGG	-	chr8_1:56471397-56471416	None:intergenic	25.0%
!	ACAAAAAAAATTAGCAAGAG+AGG	-	chr8_1:56471718-56471737	None:intergenic	25.0%
!	GAACAAGATGAAAAAGAAAA+AGG	-	chr8_1:56472638-56472657	None:intergenic	25.0%
	TCAAGCAAAGGAAACAATAT+TGG	+	chr8_1:56471783-56471802	Msa1202790:CDS	30.0%
	TTTATAGTCAGTCTACTACA+AGG	-	chr8_1:56471958-56471977	None:intergenic	30.0%
	GTAGACTGACTATAAATGTT+CGG	+	chr8_1:56471962-56471981	Msa1202790:intron	30.0%
!	GTTAAGAGTTTGACTTTGTT+AGG	+	chr8_1:56472020-56472039	Msa1202790:intron	30.0%
	TCTACAACAACAACAATTCA+TGG	+	chr8_1:56472290-56472309	Msa1202790:CDS	30.0%
	GATTACACAAGATGAAACAT+TGG	+	chr8_1:56472436-56472455	Msa1202790:exon	30.0%
	TCTTTCTGTTCTATTAACGT+AGG	-	chr8_1:56472504-56472523	None:intergenic	30.0%
!	AATGATGATGATGTAGATGT+AGG	+	chr8_1:56472532-56472551	Msa1202790:three_prime_UTR	30.0%
!!	GTAGATGTTTTTGATTGTGA+TGG	+	chr8_1:56472576-56472595	Msa1202790:three_prime_UTR	30.0%
!!	GTTTTTGATTGTGATGGTTA+TGG	+	chr8_1:56472582-56472601	Msa1202790:three_prime_UTR	30.0%
	TCAAGCAAAGGAAACAATAT+TGG	+	chr8_1:56471783-56471802	Msa1202790:CDS	30.0%
	TTTATAGTCAGTCTACTACA+AGG	-	chr8_1:56471958-56471977	None:intergenic	30.0%
	GTAGACTGACTATAAATGTT+CGG	+	chr8_1:56471962-56471981	Msa1202790:intron	30.0%
!	GTTAAGAGTTTGACTTTGTT+AGG	+	chr8_1:56472020-56472039	Msa1202790:intron	30.0%
	TCTACAACAACAACAATTCA+TGG	+	chr8_1:56472290-56472309	Msa1202790:CDS	30.0%
	GATTACACAAGATGAAACAT+TGG	+	chr8_1:56472436-56472455	Msa1202790:exon	30.0%
	TCTTTCTGTTCTATTAACGT+AGG	-	chr8_1:56472504-56472523	None:intergenic	30.0%
!	AATGATGATGATGTAGATGT+AGG	+	chr8_1:56472532-56472551	Msa1202790:three_prime_UTR	30.0%
!!	GTAGATGTTTTTGATTGTGA+TGG	+	chr8_1:56472576-56472595	Msa1202790:three_prime_UTR	30.0%
!!	GTTTTTGATTGTGATGGTTA+TGG	+	chr8_1:56472582-56472601	Msa1202790:three_prime_UTR	30.0%
	TCTCAACAAGGTCACATAAT+GGG	+	chr8_1:56471489-56471508	Msa1202790:CDS	35.0%
!!	GAGTAGTTAGAATTGGTTTG+AGG	-	chr8_1:56471543-56471562	None:intergenic	35.0%
	AAGCAACGAGTAGTTAGAAT+TGG	-	chr8_1:56471550-56471569	None:intergenic	35.0%
	GAGTAGTAGTGTAAGAGTAA+GGG	-	chr8_1:56471611-56471630	None:intergenic	35.0%
	TTCAGATAAACGTGTTGAAG+GGG	-	chr8_1:56471670-56471689	None:intergenic	35.0%
	CTTCAGATAAACGTGTTGAA+GGG	-	chr8_1:56471671-56471690	None:intergenic	35.0%
	TCTTCAGATAAACGTGTTGA+AGG	-	chr8_1:56471672-56471691	None:intergenic	35.0%
	TCTCAATCTAAGTCAAGCAA+AGG	+	chr8_1:56471771-56471790	Msa1202790:CDS	35.0%
!	AGAGTTTGACTTTGTTAGGT+AGG	+	chr8_1:56472024-56472043	Msa1202790:intron	35.0%
	TCAGATGCAGAATCAGAAAA+TGG	+	chr8_1:56472367-56472386	Msa1202790:CDS	35.0%
	GCATTCCAAATTTCCTTTCT+TGG	+	chr8_1:56472389-56472408	Msa1202790:CDS	35.0%
	AGTCTCCAAGAAAGGAAATT+TGG	-	chr8_1:56472397-56472416	None:intergenic	35.0%
	CTCTGTCTTGCTTAAGAATA+TGG	+	chr8_1:56472671-56472690	Msa1202790:three_prime_UTR	35.0%
	TCTCAACAAGGTCACATAAT+GGG	+	chr8_1:56471489-56471508	Msa1202790:CDS	35.0%
!!	GAGTAGTTAGAATTGGTTTG+AGG	-	chr8_1:56471543-56471562	None:intergenic	35.0%
	AAGCAACGAGTAGTTAGAAT+TGG	-	chr8_1:56471550-56471569	None:intergenic	35.0%
	GAGTAGTAGTGTAAGAGTAA+GGG	-	chr8_1:56471611-56471630	None:intergenic	35.0%
	TTCAGATAAACGTGTTGAAG+GGG	-	chr8_1:56471670-56471689	None:intergenic	35.0%
	CTTCAGATAAACGTGTTGAA+GGG	-	chr8_1:56471671-56471690	None:intergenic	35.0%
	TCTTCAGATAAACGTGTTGA+AGG	-	chr8_1:56471672-56471691	None:intergenic	35.0%
	TCTCAATCTAAGTCAAGCAA+AGG	+	chr8_1:56471771-56471790	Msa1202790:CDS	35.0%
!	AGAGTTTGACTTTGTTAGGT+AGG	+	chr8_1:56472024-56472043	Msa1202790:intron	35.0%
	TCAGATGCAGAATCAGAAAA+TGG	+	chr8_1:56472367-56472386	Msa1202790:CDS	35.0%
	GCATTCCAAATTTCCTTTCT+TGG	+	chr8_1:56472389-56472408	Msa1202790:CDS	35.0%
	AGTCTCCAAGAAAGGAAATT+TGG	-	chr8_1:56472397-56472416	None:intergenic	35.0%
	CTCTGTCTTGCTTAAGAATA+TGG	+	chr8_1:56472671-56472690	Msa1202790:three_prime_UTR	35.0%
	TGTTGTAGTAGCTCTCAACA+AGG	+	chr8_1:56471477-56471496	Msa1202790:CDS	40.0%
	CTCTCAACAAGGTCACATAA+TGG	+	chr8_1:56471488-56471507	Msa1202790:CDS	40.0%
	GGAGTAGTAGTGTAAGAGTA+AGG	-	chr8_1:56471612-56471631	None:intergenic	40.0%
	GTGCAATCAACAGAAGAAGA+TGG	-	chr8_1:56471633-56471652	None:intergenic	40.0%
	TTGCGGGATTAGATACAAGA+AGG	+	chr8_1:56472195-56472214	Msa1202790:CDS	40.0%
	CAACCACAGAGTCAAATGTA+TGG	+	chr8_1:56472319-56472338	Msa1202790:CDS	40.0%
	TTGCCATACATTTGACTCTG+TGG	-	chr8_1:56472325-56472344	None:intergenic	40.0%
	TGGCAATGAGCTAAGTTTCA+TGG	+	chr8_1:56472339-56472358	Msa1202790:CDS	40.0%
	TTGTGTTGAGTCTCCAAGAA+AGG	-	chr8_1:56472405-56472424	None:intergenic	40.0%
	TGTTGTAGTAGCTCTCAACA+AGG	+	chr8_1:56471477-56471496	Msa1202790:CDS	40.0%
	CTCTCAACAAGGTCACATAA+TGG	+	chr8_1:56471488-56471507	Msa1202790:CDS	40.0%
	GGAGTAGTAGTGTAAGAGTA+AGG	-	chr8_1:56471612-56471631	None:intergenic	40.0%
	GTGCAATCAACAGAAGAAGA+TGG	-	chr8_1:56471633-56471652	None:intergenic	40.0%
	TTGCGGGATTAGATACAAGA+AGG	+	chr8_1:56472195-56472214	Msa1202790:CDS	40.0%
	CAACCACAGAGTCAAATGTA+TGG	+	chr8_1:56472319-56472338	Msa1202790:CDS	40.0%
	TTGCCATACATTTGACTCTG+TGG	-	chr8_1:56472325-56472344	None:intergenic	40.0%
	TGGCAATGAGCTAAGTTTCA+TGG	+	chr8_1:56472339-56472358	Msa1202790:CDS	40.0%
	TTGTGTTGAGTCTCCAAGAA+AGG	-	chr8_1:56472405-56472424	None:intergenic	40.0%
!	CAACAAGGTCACATAATGGG+AGG	+	chr8_1:56471492-56471511	Msa1202790:CDS	45.0%
	AGCGACGGTTTCGTTTATCT+TGG	-	chr8_1:56471695-56471714	None:intergenic	45.0%
	AATTAGCAAGAGAGGAGCGA+CGG	-	chr8_1:56471710-56471729	None:intergenic	45.0%
!	ATTTTTACCTTTGGGCCACG+AGG	-	chr8_1:56471891-56471910	None:intergenic	45.0%
	GTCAGTCTACTACAAGGTCT+CGG	-	chr8_1:56471952-56471971	None:intergenic	45.0%
	CAGTCACTATGCAATGCTTG+CGG	+	chr8_1:56472178-56472197	Msa1202790:intron	45.0%
	AGTCACTATGCAATGCTTGC+GGG	+	chr8_1:56472179-56472198	Msa1202790:intron	45.0%
	GATGGTTATGGTCTCGTCAA+CGG	+	chr8_1:56472594-56472613	Msa1202790:three_prime_UTR	45.0%
!	CAACAAGGTCACATAATGGG+AGG	+	chr8_1:56471492-56471511	Msa1202790:CDS	45.0%
	AGCGACGGTTTCGTTTATCT+TGG	-	chr8_1:56471695-56471714	None:intergenic	45.0%
	AATTAGCAAGAGAGGAGCGA+CGG	-	chr8_1:56471710-56471729	None:intergenic	45.0%
!	ATTTTTACCTTTGGGCCACG+AGG	-	chr8_1:56471891-56471910	None:intergenic	45.0%
	GTCAGTCTACTACAAGGTCT+CGG	-	chr8_1:56471952-56471971	None:intergenic	45.0%
	CAGTCACTATGCAATGCTTG+CGG	+	chr8_1:56472178-56472197	Msa1202790:intron	45.0%
	AGTCACTATGCAATGCTTGC+GGG	+	chr8_1:56472179-56472198	Msa1202790:intron	45.0%
	GATGGTTATGGTCTCGTCAA+CGG	+	chr8_1:56472594-56472613	Msa1202790:three_prime_UTR	45.0%
	ATGGGAGGAACATGCACATG+TGG	+	chr8_1:56471507-56471526	Msa1202790:CDS	50.0%
	ACACCACTTCTACACCCCTT+TGG	+	chr8_1:56471856-56471875	Msa1202790:CDS	50.0%
!	TCTACACCCCTTTGGAGGAA+TGG	+	chr8_1:56471864-56471883	Msa1202790:CDS	50.0%
	ACGAGGACCATTCCTCCAAA+GGG	-	chr8_1:56471874-56471893	None:intergenic	50.0%
	CATTATGCCGCTGTTAGTCG+CGG	-	chr8_1:56472257-56472276	None:intergenic	50.0%
!	AACAGCGGCATAATGGAGTC+AGG	+	chr8_1:56472262-56472281	Msa1202790:CDS	50.0%
	ATGGGAGGAACATGCACATG+TGG	+	chr8_1:56471507-56471526	Msa1202790:CDS	50.0%
	ACACCACTTCTACACCCCTT+TGG	+	chr8_1:56471856-56471875	Msa1202790:CDS	50.0%
!	TCTACACCCCTTTGGAGGAA+TGG	+	chr8_1:56471864-56471883	Msa1202790:CDS	50.0%
	ACGAGGACCATTCCTCCAAA+GGG	-	chr8_1:56471874-56471893	None:intergenic	50.0%
	CATTATGCCGCTGTTAGTCG+CGG	-	chr8_1:56472257-56472276	None:intergenic	50.0%
!	AACAGCGGCATAATGGAGTC+AGG	+	chr8_1:56472262-56472281	Msa1202790:CDS	50.0%
!	CCTCCAAAGGGGTGTAGAAG+TGG	-	chr8_1:56471862-56471881	None:intergenic	55.0%
	CCACTTCTACACCCCTTTGG+AGG	+	chr8_1:56471859-56471878	Msa1202790:CDS	55.0%
	CGAGGACCATTCCTCCAAAG+GGG	-	chr8_1:56471873-56471892	None:intergenic	55.0%
	CACGAGGACCATTCCTCCAA+AGG	-	chr8_1:56471875-56471894	None:intergenic	55.0%
!	CTTTGGAGGAATGGTCCTCG+TGG	+	chr8_1:56471873-56471892	Msa1202790:CDS	55.0%
	ACTACAGCCGCGACTAACAG+CGG	+	chr8_1:56472247-56472266	Msa1202790:CDS	55.0%
	CGCGACTAACAGCGGCATAA+TGG	+	chr8_1:56472255-56472274	Msa1202790:CDS	55.0%
!	CCTCCAAAGGGGTGTAGAAG+TGG	-	chr8_1:56471862-56471881	None:intergenic	55.0%
	CCACTTCTACACCCCTTTGG+AGG	+	chr8_1:56471859-56471878	Msa1202790:CDS	55.0%
	CGAGGACCATTCCTCCAAAG+GGG	-	chr8_1:56471873-56471892	None:intergenic	55.0%
	CACGAGGACCATTCCTCCAA+AGG	-	chr8_1:56471875-56471894	None:intergenic	55.0%
!	CTTTGGAGGAATGGTCCTCG+TGG	+	chr8_1:56471873-56471892	Msa1202790:CDS	55.0%
	ACTACAGCCGCGACTAACAG+CGG	+	chr8_1:56472247-56472266	Msa1202790:CDS	55.0%
	CGCGACTAACAGCGGCATAA+TGG	+	chr8_1:56472255-56472274	Msa1202790:CDS	55.0%
	GAATGGTCCTCGTGGCCCAA+AGG	+	chr8_1:56471881-56471900	Msa1202790:CDS	60.0%
	AGAGAGAAGAGCGAACGCCG+CGG	+	chr8_1:56472219-56472238	Msa1202790:CDS	60.0%
	GCTGTTAGTCGCGGCTGTAG+TGG	-	chr8_1:56472248-56472267	None:intergenic	60.0%
	GAATGGTCCTCGTGGCCCAA+AGG	+	chr8_1:56471881-56471900	Msa1202790:CDS	60.0%
	AGAGAGAAGAGCGAACGCCG+CGG	+	chr8_1:56472219-56472238	Msa1202790:CDS	60.0%
	GCTGTTAGTCGCGGCTGTAG+TGG	-	chr8_1:56472248-56472267	None:intergenic	60.0%
	CGCGGCTGTAGTGGCAACCG+CGG	-	chr8_1:56472239-56472258	None:intergenic	70.0%
	CGCGGCTGTAGTGGCAACCG+CGG	-	chr8_1:56472239-56472258	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	56471393	56472826	56471393	ID=Msa1202790;Name=Msa1202790
chr8_1	mRNA	56471393	56472826	56471393	ID=Msa1202790-mRNA-1;Parent=Msa1202790;Name=Msa1202790-mRNA-1;_AED=0.00;_eAED=0.00;_QI=72\|1\|1\|1\|1\|1\|2\|376\|235
chr8_1	exon	56471393	56471902	56471393	ID=Msa1202790-mRNA-1:exon:18336;Parent=Msa1202790-mRNA-1
chr8_1	exon	56472181	56472826	56472181	ID=Msa1202790-mRNA-1:exon:18337;Parent=Msa1202790-mRNA-1
chr8_1	five_prime_UTR	56471393	56471464	56471393	ID=Msa1202790-mRNA-1:five_prime_utr;Parent=Msa1202790-mRNA-1
chr8_1	CDS	56471465	56471902	56471465	ID=Msa1202790-mRNA-1:cds;Parent=Msa1202790-mRNA-1
chr8_1	CDS	56472181	56472450	56472181	ID=Msa1202790-mRNA-1:cds;Parent=Msa1202790-mRNA-1
chr8_1	three_prime_UTR	56472451	56472826	56472451	ID=Msa1202790-mRNA-1:three_prime_utr;Parent=Msa1202790-mRNA-1

Gene Sequence

>Msa1202790

ATGATGCATCATTGTTGTAGTAGCTCTCAACAAGGTCACATAATGGGAGGAACATGCACATGTGGTATGTTTCATCCTCAAACCAATTCTAACTACTCGTTGCTTTACTCTAACTACCAACAAAATGATCATTATGATTTTGACCCTTACTCTTACACTACTACTCCATCTTCTTCTGTTGATTGCACACTCTCGCTTGCTACCCCTTCAACACGTTTATCTGAAGACCAAGATAAACGAAACCGTCGCTCCTCTCTTGCTAATTTTTTTTGTAGCAAATCTTCAAACACAAAACATAATTCTCAATCTCAATCTAAGTCAAGCAAAGGAAACAATATTGGTAGTAACTCTAACAATGATTCTCTTCTTTCTCGTCGATGTGCTAGCTGTGACACCACTTCTACACCCCTTTGGAGGAATGGTCCTCGTGGCCCAAAGTCACTATGCAATGCTTGCGGGATTAGATACAAGAAGGAAGAGAGAAGAGCGAACGCCGCGGTTGCCACTACAGCCGCGACTAACAGCGGCATAATGGAGTCAGGAAACTTCTACAACAACAACAATTCATGGTACTCACAACCACAGAGTCAAATGTATGGCAATGAGCTAAGTTTCATGGATGATTCAGATGCAGAATCAGAAAATGGCATTCCAAATTTCCTTTCTTGGAGACTCAACACAAGTCTTGTTCACGATTACACAAGATGA

Protein sequence

>Msa1202790

MMHHCCSSSQQGHIMGGTCTCGMFHPQTNSNYSLLYSNYQQNDHYDFDPYSYTTTPSSSVDCTLSLATPSTRLSEDQDKRNRRSSLANFFCSKSSNTKHNSQSQSKSSKGNNIGSNSNNDSLLSRRCASCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERRANAAVATTAATNSGIMESGNFYNNNNSWYSQPQSQMYGNELSFMDDSDAESENGIPNFLSWRLNTSLVHDYTR*