Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1202870 | XP_024628855.1 | 48.287 | 321 | 87 | 5 | 1 | 242 | 1 | 321 | 4.34e-88 | 274 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1202870 | sp|Q8GVE5|TLP2_ARATH | 40.278 | 216 | 78 | 6 | 1 | 172 | 1 | 209 | 2.40e-37 | 138 |
| Msa1202870 | sp|Q8GVE5|TLP2_ARATH | 44.737 | 76 | 41 | 1 | 166 | 241 | 309 | 383 | 1.89e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa1202870 | TF | TUB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1202870 | MtrunA17_Chr8g0373341 | 48.287 | 321 | 87 | 5 | 1 | 242 | 1 | 321 | 7.69e-90 | 268 |
| Msa1202870 | MtrunA17_Chr8g0373001 | 54.902 | 204 | 50 | 5 | 1 | 162 | 1 | 204 | 3.96e-62 | 200 |
| Msa1202870 | MtrunA17_Chr8g0373001 | 53.947 | 76 | 34 | 1 | 166 | 241 | 328 | 402 | 1.30e-16 | 78.2 |
| Msa1202870 | MtrunA17_Chr8g0373361 | 54.545 | 198 | 52 | 5 | 1 | 162 | 11 | 206 | 3.71e-59 | 192 |
| Msa1202870 | MtrunA17_Chr5g0404321 | 47.573 | 206 | 64 | 5 | 1 | 162 | 1 | 206 | 8.01e-52 | 173 |
| Msa1202870 | MtrunA17_Chr5g0404321 | 51.316 | 76 | 36 | 1 | 166 | 241 | 332 | 406 | 9.43e-15 | 72.8 |
| Msa1202870 | MtrunA17_Chr1g0155301 | 41.441 | 222 | 70 | 5 | 1 | 162 | 1 | 222 | 2.99e-38 | 138 |
| Msa1202870 | MtrunA17_Chr1g0155301 | 43.750 | 96 | 48 | 2 | 151 | 241 | 318 | 412 | 1.08e-14 | 72.8 |
| Msa1202870 | MtrunA17_Chr2g0286441 | 32.365 | 241 | 105 | 8 | 13 | 214 | 4 | 225 | 1.44e-29 | 114 |
| Msa1202870 | MtrunA17_Chr2g0315641 | 38.728 | 173 | 63 | 4 | 40 | 176 | 35 | 200 | 6.20e-29 | 112 |
| Msa1202870 | MtrunA17_Chr8g0373331 | 37.563 | 197 | 52 | 5 | 1 | 162 | 1 | 161 | 1.10e-28 | 111 |
| Msa1202870 | MtrunA17_Chr2g0278511 | 31.449 | 283 | 136 | 8 | 1 | 236 | 1 | 272 | 1.28e-28 | 112 |
| Msa1202870 | MtrunA17_Chr1g0156151 | 37.864 | 206 | 84 | 5 | 1 | 162 | 1 | 206 | 3.06e-28 | 107 |
| Msa1202870 | MtrunA17_Chr1g0196071 | 30.798 | 263 | 105 | 9 | 1 | 214 | 1 | 235 | 1.39e-27 | 108 |
| Msa1202870 | MtrunA17_Chr1g0201891 | 34.634 | 205 | 91 | 5 | 1 | 162 | 1 | 205 | 5.32e-26 | 105 |
| Msa1202870 | MtrunA17_Chr2g0315651 | 34.731 | 167 | 69 | 4 | 40 | 166 | 30 | 196 | 1.50e-20 | 89.4 |
| Msa1202870 | MtrunA17_Chr8g0373351 | 52.239 | 67 | 31 | 1 | 175 | 241 | 219 | 284 | 4.12e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1202870 | AT2G18280.2 | 40.278 | 216 | 78 | 6 | 1 | 172 | 1 | 209 | 2.44e-38 | 138 |
| Msa1202870 | AT2G18280.2 | 44.737 | 76 | 41 | 1 | 166 | 241 | 309 | 383 | 1.92e-12 | 66.6 |
| Msa1202870 | AT2G18280.1 | 40.278 | 216 | 78 | 6 | 1 | 172 | 1 | 209 | 2.44e-38 | 138 |
| Msa1202870 | AT2G18280.1 | 44.737 | 76 | 41 | 1 | 166 | 241 | 309 | 383 | 1.92e-12 | 66.6 |
| Msa1202870 | AT2G47900.2 | 31.783 | 258 | 113 | 7 | 1 | 214 | 1 | 239 | 1.03e-33 | 125 |
| Msa1202870 | AT2G47900.1 | 31.783 | 258 | 113 | 7 | 1 | 214 | 1 | 239 | 1.03e-33 | 125 |
| Msa1202870 | AT2G47900.3 | 31.660 | 259 | 113 | 7 | 1 | 214 | 1 | 240 | 1.28e-33 | 125 |
| Msa1202870 | AT1G47270.3 | 39.444 | 180 | 62 | 4 | 30 | 162 | 17 | 196 | 4.99e-32 | 121 |
| Msa1202870 | AT1G47270.3 | 44.304 | 79 | 40 | 2 | 166 | 241 | 301 | 378 | 2.64e-11 | 63.2 |
| Msa1202870 | AT1G47270.2 | 39.444 | 180 | 62 | 4 | 30 | 162 | 41 | 220 | 6.37e-32 | 121 |
| Msa1202870 | AT1G47270.2 | 44.304 | 79 | 40 | 2 | 166 | 241 | 325 | 402 | 2.66e-11 | 63.2 |
| Msa1202870 | AT1G47270.1 | 39.444 | 180 | 62 | 4 | 30 | 162 | 42 | 221 | 6.59e-32 | 121 |
| Msa1202870 | AT1G47270.1 | 44.304 | 79 | 40 | 2 | 166 | 241 | 326 | 403 | 2.54e-11 | 63.2 |
| Msa1202870 | AT1G53320.1 | 36.214 | 243 | 90 | 9 | 17 | 214 | 8 | 230 | 7.07e-31 | 117 |
| Msa1202870 | AT1G76900.2 | 37.634 | 186 | 77 | 4 | 15 | 163 | 27 | 210 | 1.35e-29 | 115 |
| Msa1202870 | AT1G76900.1 | 37.634 | 186 | 77 | 4 | 15 | 163 | 27 | 210 | 1.35e-29 | 115 |
| Msa1202870 | AT1G76900.3 | 37.634 | 186 | 77 | 4 | 15 | 163 | 27 | 210 | 1.35e-29 | 115 |
| Msa1202870 | AT1G25280.1 | 34.597 | 211 | 89 | 4 | 1 | 162 | 1 | 211 | 1.98e-26 | 106 |
| Msa1202870 | AT1G43640.1 | 31.731 | 208 | 97 | 6 | 1 | 163 | 1 | 208 | 1.37e-22 | 95.9 |
| Msa1202870 | AT5G18680.1 | 36.196 | 163 | 65 | 5 | 41 | 164 | 33 | 195 | 7.86e-20 | 87.8 |
| Msa1202870 | AT3G06380.1 | 36.000 | 150 | 59 | 4 | 47 | 159 | 33 | 182 | 6.67e-19 | 85.1 |
| Msa1202870 | AT1G43640.2 | 33.099 | 142 | 58 | 3 | 59 | 163 | 1 | 142 | 7.93e-16 | 76.3 |
| Msa1202870 | AT5G18680.2 | 43.299 | 97 | 47 | 3 | 76 | 164 | 7 | 103 | 2.16e-14 | 71.6 |
| Msa1202870 | AT3G06380.2 | 44.048 | 84 | 41 | 2 | 82 | 159 | 7 | 90 | 2.98e-14 | 71.2 |
Find 51 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTACATTCCTGATGTATT+TGG | 0.157633 | 8_1:-56582101 | Msa1202870:CDS |
| TTTCTCCTACGGTGCAAAAT+TGG | 0.271219 | 8_1:-56581361 | Msa1202870:CDS |
| TGGTTGGGGCCCTGACTTCA+TGG | 0.311483 | 8_1:-56581450 | Msa1202870:CDS |
| CATGGCATTGCTTTATTAAG+AGG | 0.337844 | 8_1:-56582135 | Msa1202870:CDS |
| TTGAAGAGAGTGAGAGATAT+TGG | 0.344771 | 8_1:-56582392 | Msa1202870:CDS |
| GGAAATTGAATCTATTCAAC+AGG | 0.354908 | 8_1:-56582466 | Msa1202870:CDS |
| TCTACCACATGAATTGCTTA+TGG | 0.366512 | 8_1:-56582430 | Msa1202870:CDS |
| GTCAAACTCACATCTTGCTT+TGG | 0.379534 | 8_1:-56582487 | Msa1202870:CDS |
| TAGCCGCGAAAATGATAAAA+AGG | 0.383747 | 8_1:-56581793 | Msa1202870:CDS |
| ATTGTATGGCAGTTAATAAT+AGG | 0.397969 | 8_1:-56581829 | Msa1202870:intron |
| GGCTTTCCTACATGCAAGAT+TGG | 0.403448 | 8_1:+56581338 | None:intergenic |
| GCAGATGGCAGAGGCTTGTA+AGG | 0.409746 | 8_1:+56581268 | None:intergenic |
| TGAAAATGGCCCATGAAGTC+AGG | 0.412357 | 8_1:+56581440 | None:intergenic |
| GGAAGAGCATCACAATGGTT+GGG | 0.430305 | 8_1:-56581465 | Msa1202870:CDS |
| ATCTATTCAACAGGGACAAT+GGG | 0.454866 | 8_1:-56582457 | Msa1202870:CDS |
| GGTTGGGGCCCTGACTTCAT+GGG | 0.474980 | 8_1:-56581449 | Msa1202870:CDS |
| GGGAAGAGCATCACAATGGT+TGG | 0.483765 | 8_1:-56581466 | Msa1202870:CDS |
| CATGGATAAGCACGGGGACC+AGG | 0.488976 | 8_1:+56582154 | None:intergenic |
| TCTGCCATCTGCTTGATTCG+TGG | 0.492682 | 8_1:-56581257 | Msa1202870:CDS |
| TACATTGCTCCAAATACATC+AGG | 0.507175 | 8_1:+56582092 | None:intergenic |
| AGTCAAGGATATGACGAAGT+TGG | 0.525647 | 8_1:+56581769 | None:intergenic |
| CTGGTCCCCGTGCTTATCCA+TGG | 0.526433 | 8_1:-56582153 | Msa1202870:CDS |
| GCTTATGGACATTATCCGTA+GGG | 0.534315 | 8_1:-56582415 | Msa1202870:CDS |
| AATCTATTCAACAGGGACAA+TGG | 0.538550 | 8_1:-56582458 | Msa1202870:CDS |
| ATCTCGTAATGTTTCTCCTA+CGG | 0.539696 | 8_1:-56581372 | Msa1202870:CDS |
| AACTTCGTCATATCCTTGAC+TGG | 0.547745 | 8_1:-56581767 | Msa1202870:CDS |
| AAGCATGGTCGGAGAACTCA+AGG | 0.564464 | 8_1:-56582565 | Msa1202870:CDS |
| TGCTTATGGACATTATCCGT+AGG | 0.565916 | 8_1:-56582416 | Msa1202870:CDS |
| GAAGAGCATCACAATGGTTG+GGG | 0.571615 | 8_1:-56581464 | Msa1202870:CDS |
| GCAATGCCATGGATAAGCAC+GGG | 0.572431 | 8_1:+56582147 | None:intergenic |
| ACGAATCAAGCAGATGGCAG+AGG | 0.573193 | 8_1:+56581259 | None:intergenic |
| CTCTTAATAAAGCAATGCCA+TGG | 0.575671 | 8_1:+56582136 | None:intergenic |
| AATCTTGCATGTAGGAAAGC+CGG | 0.578764 | 8_1:-56581336 | Msa1202870:CDS |
| AAGACAACAGCAGAACGCGC+AGG | 0.588296 | 8_1:+56582369 | None:intergenic |
| ATGGCATTGAAAAGCATGGT+CGG | 0.597357 | 8_1:-56582576 | Msa1202870:CDS |
| AATTGGCCAATCTTGCATGT+AGG | 0.601422 | 8_1:-56581344 | Msa1202870:CDS |
| GAAAATGGCCCATGAAGTCA+GGG | 0.604079 | 8_1:+56581441 | None:intergenic |
| GAGTGGATAAGCGTAGTACA+TGG | 0.606543 | 8_1:+56581295 | None:intergenic |
| GAGGCTTGTAAGGCAGAGAG+TGG | 0.606770 | 8_1:+56581278 | None:intergenic |
| AGCAATGCCATGGATAAGCA+CGG | 0.608496 | 8_1:+56582146 | None:intergenic |
| ACAAATATGTTTGTAAACTG+AGG | 0.610066 | 8_1:-56581721 | Msa1202870:intron |
| AAACATGGCATTGAAAAGCA+TGG | 0.625441 | 8_1:-56582580 | None:intergenic |
| TCTCACTCTCTTCAACCCTA+CGG | 0.625842 | 8_1:+56582400 | None:intergenic |
| TATGCCACGAATCAAGCAGA+TGG | 0.633849 | 8_1:+56581253 | None:intergenic |
| ACTGTCGTATAGAGTGAACT+TGG | 0.646011 | 8_1:+56581584 | None:intergenic |
| GCATGGTCGGAGAACTCAAG+GGG | 0.647843 | 8_1:-56582563 | Msa1202870:CDS |
| GAAATTGAATCTATTCAACA+GGG | 0.671920 | 8_1:-56582465 | Msa1202870:CDS |
| CAATGCCATGGATAAGCACG+GGG | 0.702540 | 8_1:+56582148 | None:intergenic |
| AGCATGGTCGGAGAACTCAA+GGG | 0.702833 | 8_1:-56582564 | Msa1202870:CDS |
| AGATGGGAAGAGCATCACAA+TGG | 0.704024 | 8_1:-56581470 | Msa1202870:CDS |
| ATGTCCATAAGCAATTCATG+TGG | 0.710807 | 8_1:+56582426 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAATGGAATATCAAAG+CGG | - | chr8_1:56581287-56581306 | Msa1202870:CDS | 20.0% |
| !! | ACGTATATAAATCAAATTGT+GGG | + | chr8_1:56582198-56582217 | None:intergenic | 20.0% |
| !! | TACGTATATAAATCAAATTG+TGG | + | chr8_1:56582199-56582218 | None:intergenic | 20.0% |
| !!! | CAATTTGATTTATATACGTA+CGG | - | chr8_1:56582199-56582218 | Msa1202870:intron | 20.0% |
| !!! | GTGAATATATTTTTTCTAAC+CGG | + | chr8_1:56582512-56582531 | None:intergenic | 20.0% |
| !! | TTAAAAATGGAATATCAAAG+CGG | - | chr8_1:56581287-56581306 | Msa1202870:CDS | 20.0% |
| !! | ACGTATATAAATCAAATTGT+GGG | + | chr8_1:56582198-56582217 | None:intergenic | 20.0% |
| !! | TACGTATATAAATCAAATTG+TGG | + | chr8_1:56582199-56582218 | None:intergenic | 20.0% |
| !!! | CAATTTGATTTATATACGTA+CGG | - | chr8_1:56582199-56582218 | Msa1202870:intron | 20.0% |
| !!! | GTGAATATATTTTTTCTAAC+CGG | + | chr8_1:56582512-56582531 | None:intergenic | 20.0% |
| ! | TAAAAATGGAATATCAAAGC+GGG | - | chr8_1:56581288-56581307 | Msa1202870:CDS | 25.0% |
| ! | GAAATTGAATCTATTCAACA+GGG | - | chr8_1:56581361-56581380 | Msa1202870:CDS | 25.0% |
| ! | GAGAACAAAAAAAATCATGA+GGG | + | chr8_1:56581630-56581649 | None:intergenic | 25.0% |
| ! | AGAGAACAAAAAAAATCATG+AGG | + | chr8_1:56581631-56581650 | None:intergenic | 25.0% |
| ! | TATTCACTGTGTTTGAAAAA+GGG | + | chr8_1:56581786-56581805 | None:intergenic | 25.0% |
| ! | ATATTCACTGTGTTTGAAAA+AGG | + | chr8_1:56581787-56581806 | None:intergenic | 25.0% |
| ! | ATTGTATGGCAGTTAATAAT+AGG | - | chr8_1:56581997-56582016 | Msa1202870:intron | 25.0% |
| ! | ACAAATATGTTTGTAAACTG+AGG | - | chr8_1:56582105-56582124 | Msa1202870:CDS | 25.0% |
| !!! | ACTTTTTTTTAGCCTTCAAT+AGG | - | chr8_1:56582148-56582167 | Msa1202870:CDS | 25.0% |
| ! | TCAAATTGTGGGTATTATAA+GGG | + | chr8_1:56582187-56582206 | None:intergenic | 25.0% |
| ! | ATCAAATTGTGGGTATTATA+AGG | + | chr8_1:56582188-56582207 | None:intergenic | 25.0% |
| ! | AAAGTTTCATCAAATACAGA+AGG | + | chr8_1:56582271-56582290 | None:intergenic | 25.0% |
| !!! | AGTCTTGTTTTTCAGTATAA+AGG | + | chr8_1:56582333-56582352 | None:intergenic | 25.0% |
| ! | TAAAAATGGAATATCAAAGC+GGG | - | chr8_1:56581288-56581307 | Msa1202870:CDS | 25.0% |
| ! | GAAATTGAATCTATTCAACA+GGG | - | chr8_1:56581361-56581380 | Msa1202870:CDS | 25.0% |
| ! | GAGAACAAAAAAAATCATGA+GGG | + | chr8_1:56581630-56581649 | None:intergenic | 25.0% |
| ! | AGAGAACAAAAAAAATCATG+AGG | + | chr8_1:56581631-56581650 | None:intergenic | 25.0% |
| ! | TATTCACTGTGTTTGAAAAA+GGG | + | chr8_1:56581786-56581805 | None:intergenic | 25.0% |
| ! | ATATTCACTGTGTTTGAAAA+AGG | + | chr8_1:56581787-56581806 | None:intergenic | 25.0% |
| ! | ATTGTATGGCAGTTAATAAT+AGG | - | chr8_1:56581997-56582016 | Msa1202870:intron | 25.0% |
| ! | ACAAATATGTTTGTAAACTG+AGG | - | chr8_1:56582105-56582124 | Msa1202870:CDS | 25.0% |
| !!! | ACTTTTTTTTAGCCTTCAAT+AGG | - | chr8_1:56582148-56582167 | Msa1202870:CDS | 25.0% |
| ! | TCAAATTGTGGGTATTATAA+GGG | + | chr8_1:56582187-56582206 | None:intergenic | 25.0% |
| ! | ATCAAATTGTGGGTATTATA+AGG | + | chr8_1:56582188-56582207 | None:intergenic | 25.0% |
| ! | AAAGTTTCATCAAATACAGA+AGG | + | chr8_1:56582271-56582290 | None:intergenic | 25.0% |
| !!! | AGTCTTGTTTTTCAGTATAA+AGG | + | chr8_1:56582333-56582352 | None:intergenic | 25.0% |
| AAAAATGGAATATCAAAGCG+GGG | - | chr8_1:56581289-56581308 | Msa1202870:CDS | 30.0% | |
| GGAAATTGAATCTATTCAAC+AGG | - | chr8_1:56581360-56581379 | Msa1202870:CDS | 30.0% | |
| TATTACCTGCTTCATGAAAT+AGG | + | chr8_1:56581565-56581584 | None:intergenic | 30.0% | |
| TAAATTATTCTCCCACTTTC+TGG | - | chr8_1:56581583-56581602 | Msa1202870:CDS | 30.0% | |
| TTCTACATTCCTGATGTATT+TGG | - | chr8_1:56581725-56581744 | Msa1202870:CDS | 30.0% | |
| !! | TTGGTTTGGTTGTAATTGTA+TGG | - | chr8_1:56581983-56582002 | Msa1202870:intron | 30.0% |
| AAATTGTGGGTATTATAAGG+GGG | + | chr8_1:56582185-56582204 | None:intergenic | 30.0% | |
| CAAATTGTGGGTATTATAAG+GGG | + | chr8_1:56582186-56582205 | None:intergenic | 30.0% | |
| TGAAAAACAAGACTCTTAGA+TGG | - | chr8_1:56582339-56582358 | Msa1202870:intron | 30.0% | |
| GAAAAACAAGACTCTTAGAT+GGG | - | chr8_1:56582340-56582359 | Msa1202870:intron | 30.0% | |
| ! | TTTGAGCTTGTAACTTTTGT+TGG | - | chr8_1:56582428-56582447 | Msa1202870:CDS | 30.0% |
| AAAAATGGAATATCAAAGCG+GGG | - | chr8_1:56581289-56581308 | Msa1202870:CDS | 30.0% | |
| GGAAATTGAATCTATTCAAC+AGG | - | chr8_1:56581360-56581379 | Msa1202870:CDS | 30.0% | |
| TATTACCTGCTTCATGAAAT+AGG | + | chr8_1:56581565-56581584 | None:intergenic | 30.0% | |
| TAAATTATTCTCCCACTTTC+TGG | - | chr8_1:56581583-56581602 | Msa1202870:CDS | 30.0% | |
| TTCTACATTCCTGATGTATT+TGG | - | chr8_1:56581725-56581744 | Msa1202870:CDS | 30.0% | |
| !! | TTGGTTTGGTTGTAATTGTA+TGG | - | chr8_1:56581983-56582002 | Msa1202870:intron | 30.0% |
| AAATTGTGGGTATTATAAGG+GGG | + | chr8_1:56582185-56582204 | None:intergenic | 30.0% | |
| CAAATTGTGGGTATTATAAG+GGG | + | chr8_1:56582186-56582205 | None:intergenic | 30.0% | |
| TGAAAAACAAGACTCTTAGA+TGG | - | chr8_1:56582339-56582358 | Msa1202870:intron | 30.0% | |
| GAAAAACAAGACTCTTAGAT+GGG | - | chr8_1:56582340-56582359 | Msa1202870:intron | 30.0% | |
| ! | TTTGAGCTTGTAACTTTTGT+TGG | - | chr8_1:56582428-56582447 | Msa1202870:CDS | 30.0% |
| GAACTCAAGGGGATTAAAAA+TGG | - | chr8_1:56581274-56581293 | Msa1202870:CDS | 35.0% | |
| ! | AGAGCGAGAATTTTCTCTAT+CGG | - | chr8_1:56581317-56581336 | Msa1202870:CDS | 35.0% |
| AATCTATTCAACAGGGACAA+TGG | - | chr8_1:56581368-56581387 | Msa1202870:CDS | 35.0% | |
| ATCTATTCAACAGGGACAAT+GGG | - | chr8_1:56581369-56581388 | Msa1202870:CDS | 35.0% | |
| TCTACCACATGAATTGCTTA+TGG | - | chr8_1:56581396-56581415 | Msa1202870:CDS | 35.0% | |
| ATGTCCATAAGCAATTCATG+TGG | + | chr8_1:56581403-56581422 | None:intergenic | 35.0% | |
| TTGAAGAGAGTGAGAGATAT+TGG | - | chr8_1:56581434-56581453 | Msa1202870:CDS | 35.0% | |
| !! | AGTCTTGATGATCTCTTTTG+TGG | + | chr8_1:56581515-56581534 | None:intergenic | 35.0% |
| AATGTGATCATTCCACATTG+CGG | + | chr8_1:56581541-56581560 | None:intergenic | 35.0% | |
| CATTTCCTATTTCATGAAGC+AGG | - | chr8_1:56581557-56581576 | Msa1202870:intron | 35.0% | |
| ! | TTTGGATTAGACCAGAAAGT+GGG | + | chr8_1:56581597-56581616 | None:intergenic | 35.0% |
| ! | ATTTGGATTAGACCAGAAAG+TGG | + | chr8_1:56581598-56581617 | None:intergenic | 35.0% |
| CATGAGGGAAAAGACTAATT+TGG | + | chr8_1:56581615-56581634 | None:intergenic | 35.0% | |
| CTCTTAATAAAGCAATGCCA+TGG | + | chr8_1:56581693-56581712 | None:intergenic | 35.0% | |
| ! | CATGGCATTGCTTTATTAAG+AGG | - | chr8_1:56581691-56581710 | Msa1202870:intron | 35.0% |
| TACATTGCTCCAAATACATC+AGG | + | chr8_1:56581737-56581756 | None:intergenic | 35.0% | |
| ACTTACTTGCTCTACGTTTA+TGG | - | chr8_1:56581877-56581896 | Msa1202870:intron | 35.0% | |
| !! | CGTATTTAAGCAGCTTGTTT+TGG | - | chr8_1:56581964-56581983 | Msa1202870:intron | 35.0% |
| !!! | TTAAGCAGCTTGTTTTGGTT+TGG | - | chr8_1:56581969-56581988 | Msa1202870:intron | 35.0% |
| TAGCCGCGAAAATGATAAAA+AGG | - | chr8_1:56582033-56582052 | Msa1202870:intron | 35.0% | |
| ! | GGACCTTTTTATCATTTTCG+CGG | + | chr8_1:56582039-56582058 | None:intergenic | 35.0% |
| AGAAAAATCATCTCCAGTCA+AGG | + | chr8_1:56582075-56582094 | None:intergenic | 35.0% | |
| TTGATTTATATACGTACGGC+AGG | - | chr8_1:56582203-56582222 | Msa1202870:intron | 35.0% | |
| ! | GCACAGTTTTCACTTGAAAA+TGG | + | chr8_1:56582403-56582422 | None:intergenic | 35.0% |
| ATCTCGTAATGTTTCTCCTA+CGG | - | chr8_1:56582454-56582473 | Msa1202870:CDS | 35.0% | |
| GAACTCAAGGGGATTAAAAA+TGG | - | chr8_1:56581274-56581293 | Msa1202870:CDS | 35.0% | |
| ! | AGAGCGAGAATTTTCTCTAT+CGG | - | chr8_1:56581317-56581336 | Msa1202870:CDS | 35.0% |
| AATCTATTCAACAGGGACAA+TGG | - | chr8_1:56581368-56581387 | Msa1202870:CDS | 35.0% | |
| ATCTATTCAACAGGGACAAT+GGG | - | chr8_1:56581369-56581388 | Msa1202870:CDS | 35.0% | |
| TCTACCACATGAATTGCTTA+TGG | - | chr8_1:56581396-56581415 | Msa1202870:CDS | 35.0% | |
| ATGTCCATAAGCAATTCATG+TGG | + | chr8_1:56581403-56581422 | None:intergenic | 35.0% | |
| TTGAAGAGAGTGAGAGATAT+TGG | - | chr8_1:56581434-56581453 | Msa1202870:CDS | 35.0% | |
| !! | AGTCTTGATGATCTCTTTTG+TGG | + | chr8_1:56581515-56581534 | None:intergenic | 35.0% |
| AATGTGATCATTCCACATTG+CGG | + | chr8_1:56581541-56581560 | None:intergenic | 35.0% | |
| CATTTCCTATTTCATGAAGC+AGG | - | chr8_1:56581557-56581576 | Msa1202870:intron | 35.0% | |
| ! | TTTGGATTAGACCAGAAAGT+GGG | + | chr8_1:56581597-56581616 | None:intergenic | 35.0% |
| ! | ATTTGGATTAGACCAGAAAG+TGG | + | chr8_1:56581598-56581617 | None:intergenic | 35.0% |
| CATGAGGGAAAAGACTAATT+TGG | + | chr8_1:56581615-56581634 | None:intergenic | 35.0% | |
| CTCTTAATAAAGCAATGCCA+TGG | + | chr8_1:56581693-56581712 | None:intergenic | 35.0% | |
| ! | CATGGCATTGCTTTATTAAG+AGG | - | chr8_1:56581691-56581710 | Msa1202870:intron | 35.0% |
| TACATTGCTCCAAATACATC+AGG | + | chr8_1:56581737-56581756 | None:intergenic | 35.0% | |
| ACTTACTTGCTCTACGTTTA+TGG | - | chr8_1:56581877-56581896 | Msa1202870:intron | 35.0% | |
| !! | CGTATTTAAGCAGCTTGTTT+TGG | - | chr8_1:56581964-56581983 | Msa1202870:intron | 35.0% |
| !!! | TTAAGCAGCTTGTTTTGGTT+TGG | - | chr8_1:56581969-56581988 | Msa1202870:intron | 35.0% |
| TAGCCGCGAAAATGATAAAA+AGG | - | chr8_1:56582033-56582052 | Msa1202870:intron | 35.0% | |
| ! | GGACCTTTTTATCATTTTCG+CGG | + | chr8_1:56582039-56582058 | None:intergenic | 35.0% |
| AGAAAAATCATCTCCAGTCA+AGG | + | chr8_1:56582075-56582094 | None:intergenic | 35.0% | |
| TTGATTTATATACGTACGGC+AGG | - | chr8_1:56582203-56582222 | Msa1202870:intron | 35.0% | |
| ! | GCACAGTTTTCACTTGAAAA+TGG | + | chr8_1:56582403-56582422 | None:intergenic | 35.0% |
| ATCTCGTAATGTTTCTCCTA+CGG | - | chr8_1:56582454-56582473 | Msa1202870:CDS | 35.0% | |
| ! | ATGGCATTGAAAAGCATGGT+CGG | - | chr8_1:56581250-56581269 | Msa1202870:CDS | 40.0% |
| GTCAAACTCACATCTTGCTT+TGG | - | chr8_1:56581339-56581358 | Msa1202870:CDS | 40.0% | |
| TGCTTATGGACATTATCCGT+AGG | - | chr8_1:56581410-56581429 | Msa1202870:CDS | 40.0% | |
| GCTTATGGACATTATCCGTA+GGG | - | chr8_1:56581411-56581430 | Msa1202870:CDS | 40.0% | |
| ! | TGCTGTTGTCTTTTGTGCTT+CGG | - | chr8_1:56581468-56581487 | Msa1202870:CDS | 40.0% |
| GTGCTTCGGTATGTAAATCA+TGG | - | chr8_1:56581482-56581501 | Msa1202870:intron | 40.0% | |
| CTTCGGTATGTAAATCATGG+AGG | - | chr8_1:56581485-56581504 | Msa1202870:intron | 40.0% | |
| !! | CTTGATGATCTCTTTTGTGG+CGG | + | chr8_1:56581512-56581531 | None:intergenic | 40.0% |
| CTTCATGTGTATGAATAGCC+TGG | - | chr8_1:56581654-56581673 | Msa1202870:intron | 40.0% | |
| CACTGTGTTTGAAAAAGGGA+TGG | + | chr8_1:56581782-56581801 | None:intergenic | 40.0% | |
| AGTCAAGGATATGACGAAGT+TGG | + | chr8_1:56582060-56582079 | None:intergenic | 40.0% | |
| AACTTCGTCATATCCTTGAC+TGG | - | chr8_1:56582059-56582078 | Msa1202870:intron | 40.0% | |
| GTGGAAGAAAAGCCTATTGA+AGG | + | chr8_1:56582163-56582182 | None:intergenic | 40.0% | |
| ! | GTACGGCAGGTCAAATTTTT+GGG | - | chr8_1:56582216-56582235 | Msa1202870:intron | 40.0% |
| ! | TACGGCAGGTCAAATTTTTG+GGG | - | chr8_1:56582217-56582236 | Msa1202870:intron | 40.0% |
| ACTGTCGTATAGAGTGAACT+TGG | + | chr8_1:56582245-56582264 | None:intergenic | 40.0% | |
| ! | GAGCTTGTAACTTTTGTTGG+TGG | - | chr8_1:56582431-56582450 | Msa1202870:CDS | 40.0% |
| TTTCTCCTACGGTGCAAAAT+TGG | - | chr8_1:56582465-56582484 | Msa1202870:CDS | 40.0% | |
| AATTGGCCAATCTTGCATGT+AGG | - | chr8_1:56582482-56582501 | Msa1202870:CDS | 40.0% | |
| AATCTTGCATGTAGGAAAGC+CGG | - | chr8_1:56582490-56582509 | Msa1202870:CDS | 40.0% | |
| ! | ATGGCATTGAAAAGCATGGT+CGG | - | chr8_1:56581250-56581269 | Msa1202870:CDS | 40.0% |
| GTCAAACTCACATCTTGCTT+TGG | - | chr8_1:56581339-56581358 | Msa1202870:CDS | 40.0% | |
| TGCTTATGGACATTATCCGT+AGG | - | chr8_1:56581410-56581429 | Msa1202870:CDS | 40.0% | |
| GCTTATGGACATTATCCGTA+GGG | - | chr8_1:56581411-56581430 | Msa1202870:CDS | 40.0% | |
| ! | TGCTGTTGTCTTTTGTGCTT+CGG | - | chr8_1:56581468-56581487 | Msa1202870:CDS | 40.0% |
| GTGCTTCGGTATGTAAATCA+TGG | - | chr8_1:56581482-56581501 | Msa1202870:intron | 40.0% | |
| CTTCGGTATGTAAATCATGG+AGG | - | chr8_1:56581485-56581504 | Msa1202870:intron | 40.0% | |
| !! | CTTGATGATCTCTTTTGTGG+CGG | + | chr8_1:56581512-56581531 | None:intergenic | 40.0% |
| CTTCATGTGTATGAATAGCC+TGG | - | chr8_1:56581654-56581673 | Msa1202870:intron | 40.0% | |
| CACTGTGTTTGAAAAAGGGA+TGG | + | chr8_1:56581782-56581801 | None:intergenic | 40.0% | |
| AGTCAAGGATATGACGAAGT+TGG | + | chr8_1:56582060-56582079 | None:intergenic | 40.0% | |
| AACTTCGTCATATCCTTGAC+TGG | - | chr8_1:56582059-56582078 | Msa1202870:intron | 40.0% | |
| GTGGAAGAAAAGCCTATTGA+AGG | + | chr8_1:56582163-56582182 | None:intergenic | 40.0% | |
| ! | GTACGGCAGGTCAAATTTTT+GGG | - | chr8_1:56582216-56582235 | Msa1202870:intron | 40.0% |
| ! | TACGGCAGGTCAAATTTTTG+GGG | - | chr8_1:56582217-56582236 | Msa1202870:intron | 40.0% |
| ACTGTCGTATAGAGTGAACT+TGG | + | chr8_1:56582245-56582264 | None:intergenic | 40.0% | |
| ! | GAGCTTGTAACTTTTGTTGG+TGG | - | chr8_1:56582431-56582450 | Msa1202870:CDS | 40.0% |
| TTTCTCCTACGGTGCAAAAT+TGG | - | chr8_1:56582465-56582484 | Msa1202870:CDS | 40.0% | |
| AATTGGCCAATCTTGCATGT+AGG | - | chr8_1:56582482-56582501 | Msa1202870:CDS | 40.0% | |
| AATCTTGCATGTAGGAAAGC+CGG | - | chr8_1:56582490-56582509 | Msa1202870:CDS | 40.0% | |
| TCTCACTCTCTTCAACCCTA+CGG | + | chr8_1:56581429-56581448 | None:intergenic | 45.0% | |
| ATCAAGACTCTTCCGCAATG+TGG | - | chr8_1:56581526-56581545 | Msa1202870:intron | 45.0% | |
| AGCAATGCCATGGATAAGCA+CGG | + | chr8_1:56581683-56581702 | None:intergenic | 45.0% | |
| TTGTGGGTATTATAAGGGGG+TGG | + | chr8_1:56582182-56582201 | None:intergenic | 45.0% | |
| ! | CGTACGGCAGGTCAAATTTT+TGG | - | chr8_1:56582215-56582234 | Msa1202870:intron | 45.0% |
| AAAGGTCTCAACTGAGCCTT+TGG | + | chr8_1:56582315-56582334 | None:intergenic | 45.0% | |
| !! | AGATGGGAAGAGCATCACAA+TGG | - | chr8_1:56582356-56582375 | Msa1202870:intron | 45.0% |
| !! | GGAAGAGCATCACAATGGTT+GGG | - | chr8_1:56582361-56582380 | Msa1202870:CDS | 45.0% |
| !! | GAAGAGCATCACAATGGTTG+GGG | - | chr8_1:56582362-56582381 | Msa1202870:CDS | 45.0% |
| GAAAATGGCCCATGAAGTCA+GGG | + | chr8_1:56582388-56582407 | None:intergenic | 45.0% | |
| TGAAAATGGCCCATGAAGTC+AGG | + | chr8_1:56582389-56582408 | None:intergenic | 45.0% | |
| ! | ATTGGCCAATTTTGCACCGT+AGG | + | chr8_1:56582473-56582492 | None:intergenic | 45.0% |
| GGCTTTCCTACATGCAAGAT+TGG | + | chr8_1:56582491-56582510 | None:intergenic | 45.0% | |
| GAGTGGATAAGCGTAGTACA+TGG | + | chr8_1:56582534-56582553 | None:intergenic | 45.0% | |
| TATGCCACGAATCAAGCAGA+TGG | + | chr8_1:56582576-56582595 | None:intergenic | 45.0% | |
| TCTCACTCTCTTCAACCCTA+CGG | + | chr8_1:56581429-56581448 | None:intergenic | 45.0% | |
| ATCAAGACTCTTCCGCAATG+TGG | - | chr8_1:56581526-56581545 | Msa1202870:intron | 45.0% | |
| AGCAATGCCATGGATAAGCA+CGG | + | chr8_1:56581683-56581702 | None:intergenic | 45.0% | |
| TTGTGGGTATTATAAGGGGG+TGG | + | chr8_1:56582182-56582201 | None:intergenic | 45.0% | |
| ! | CGTACGGCAGGTCAAATTTT+TGG | - | chr8_1:56582215-56582234 | Msa1202870:intron | 45.0% |
| AAAGGTCTCAACTGAGCCTT+TGG | + | chr8_1:56582315-56582334 | None:intergenic | 45.0% | |
| !! | AGATGGGAAGAGCATCACAA+TGG | - | chr8_1:56582356-56582375 | Msa1202870:intron | 45.0% |
| !! | GGAAGAGCATCACAATGGTT+GGG | - | chr8_1:56582361-56582380 | Msa1202870:CDS | 45.0% |
| !! | GAAGAGCATCACAATGGTTG+GGG | - | chr8_1:56582362-56582381 | Msa1202870:CDS | 45.0% |
| GAAAATGGCCCATGAAGTCA+GGG | + | chr8_1:56582388-56582407 | None:intergenic | 45.0% | |
| TGAAAATGGCCCATGAAGTC+AGG | + | chr8_1:56582389-56582408 | None:intergenic | 45.0% | |
| ! | ATTGGCCAATTTTGCACCGT+AGG | + | chr8_1:56582473-56582492 | None:intergenic | 45.0% |
| GGCTTTCCTACATGCAAGAT+TGG | + | chr8_1:56582491-56582510 | None:intergenic | 45.0% | |
| GAGTGGATAAGCGTAGTACA+TGG | + | chr8_1:56582534-56582553 | None:intergenic | 45.0% | |
| TATGCCACGAATCAAGCAGA+TGG | + | chr8_1:56582576-56582595 | None:intergenic | 45.0% | |
| AAGCATGGTCGGAGAACTCA+AGG | - | chr8_1:56581261-56581280 | Msa1202870:CDS | 50.0% | |
| AGCATGGTCGGAGAACTCAA+GGG | - | chr8_1:56581262-56581281 | Msa1202870:CDS | 50.0% | |
| CAATGCCATGGATAAGCACG+GGG | + | chr8_1:56581681-56581700 | None:intergenic | 50.0% | |
| GCAATGCCATGGATAAGCAC+GGG | + | chr8_1:56581682-56581701 | None:intergenic | 50.0% | |
| !! | GGGAAGAGCATCACAATGGT+TGG | - | chr8_1:56582360-56582379 | Msa1202870:CDS | 50.0% |
| ACGAATCAAGCAGATGGCAG+AGG | + | chr8_1:56582570-56582589 | None:intergenic | 50.0% | |
| ! | TCTGCCATCTGCTTGATTCG+TGG | - | chr8_1:56582569-56582588 | Msa1202870:CDS | 50.0% |
| AAGCATGGTCGGAGAACTCA+AGG | - | chr8_1:56581261-56581280 | Msa1202870:CDS | 50.0% | |
| AGCATGGTCGGAGAACTCAA+GGG | - | chr8_1:56581262-56581281 | Msa1202870:CDS | 50.0% | |
| CAATGCCATGGATAAGCACG+GGG | + | chr8_1:56581681-56581700 | None:intergenic | 50.0% | |
| GCAATGCCATGGATAAGCAC+GGG | + | chr8_1:56581682-56581701 | None:intergenic | 50.0% | |
| !! | GGGAAGAGCATCACAATGGT+TGG | - | chr8_1:56582360-56582379 | Msa1202870:CDS | 50.0% |
| ACGAATCAAGCAGATGGCAG+AGG | + | chr8_1:56582570-56582589 | None:intergenic | 50.0% | |
| ! | TCTGCCATCTGCTTGATTCG+TGG | - | chr8_1:56582569-56582588 | Msa1202870:CDS | 50.0% |
| GCATGGTCGGAGAACTCAAG+GGG | - | chr8_1:56581263-56581282 | Msa1202870:CDS | 55.0% | |
| AAGACAACAGCAGAACGCGC+AGG | + | chr8_1:56581460-56581479 | None:intergenic | 55.0% | |
| !! | CTTTGGCTCAGTGCTGGTGA+AGG | + | chr8_1:56582298-56582317 | None:intergenic | 55.0% |
| ! | CTTCACCAGCACTGAGCCAA+AGG | - | chr8_1:56582296-56582315 | Msa1202870:intron | 55.0% |
| GAGGCTTGTAAGGCAGAGAG+TGG | + | chr8_1:56582551-56582570 | None:intergenic | 55.0% | |
| GCAGATGGCAGAGGCTTGTA+AGG | + | chr8_1:56582561-56582580 | None:intergenic | 55.0% | |
| GCATGGTCGGAGAACTCAAG+GGG | - | chr8_1:56581263-56581282 | Msa1202870:CDS | 55.0% | |
| AAGACAACAGCAGAACGCGC+AGG | + | chr8_1:56581460-56581479 | None:intergenic | 55.0% | |
| !! | CTTTGGCTCAGTGCTGGTGA+AGG | + | chr8_1:56582298-56582317 | None:intergenic | 55.0% |
| ! | CTTCACCAGCACTGAGCCAA+AGG | - | chr8_1:56582296-56582315 | Msa1202870:intron | 55.0% |
| GAGGCTTGTAAGGCAGAGAG+TGG | + | chr8_1:56582551-56582570 | None:intergenic | 55.0% | |
| GCAGATGGCAGAGGCTTGTA+AGG | + | chr8_1:56582561-56582580 | None:intergenic | 55.0% | |
| CATGGATAAGCACGGGGACC+AGG | + | chr8_1:56581675-56581694 | None:intergenic | 60.0% | |
| CTGGTCCCCGTGCTTATCCA+TGG | - | chr8_1:56581673-56581692 | Msa1202870:intron | 60.0% | |
| ! | CTGAGCCTTTGGCTCAGTGC+TGG | + | chr8_1:56582304-56582323 | None:intergenic | 60.0% |
| TGGTTGGGGCCCTGACTTCA+TGG | - | chr8_1:56582376-56582395 | Msa1202870:CDS | 60.0% | |
| GGTTGGGGCCCTGACTTCAT+GGG | - | chr8_1:56582377-56582396 | Msa1202870:CDS | 60.0% | |
| CATGGATAAGCACGGGGACC+AGG | + | chr8_1:56581675-56581694 | None:intergenic | 60.0% | |
| CTGGTCCCCGTGCTTATCCA+TGG | - | chr8_1:56581673-56581692 | Msa1202870:intron | 60.0% | |
| ! | CTGAGCCTTTGGCTCAGTGC+TGG | + | chr8_1:56582304-56582323 | None:intergenic | 60.0% |
| TGGTTGGGGCCCTGACTTCA+TGG | - | chr8_1:56582376-56582395 | Msa1202870:CDS | 60.0% | |
| GGTTGGGGCCCTGACTTCAT+GGG | - | chr8_1:56582377-56582396 | Msa1202870:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 56581250 | 56582598 | 56581250 | ID=Msa1202870;Name=Msa1202870 |
| chr8_1 | mRNA | 56581250 | 56582598 | 56581250 | ID=Msa1202870-mRNA-1;Parent=Msa1202870;Name=Msa1202870-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|0|0|1|1|1|5|0|245 |
| chr8_1 | exon | 56582359 | 56582598 | 56582359 | ID=Msa1202870-mRNA-1:exon:18492;Parent=Msa1202870-mRNA-1 |
| chr8_1 | exon | 56582095 | 56582176 | 56582095 | ID=Msa1202870-mRNA-1:exon:18491;Parent=Msa1202870-mRNA-1 |
| chr8_1 | exon | 56581722 | 56581839 | 56581722 | ID=Msa1202870-mRNA-1:exon:18490;Parent=Msa1202870-mRNA-1 |
| chr8_1 | exon | 56581575 | 56581623 | 56581575 | ID=Msa1202870-mRNA-1:exon:18489;Parent=Msa1202870-mRNA-1 |
| chr8_1 | exon | 56581250 | 56581498 | 56581250 | ID=Msa1202870-mRNA-1:exon:18488;Parent=Msa1202870-mRNA-1 |
| chr8_1 | CDS | 56582359 | 56582598 | 56582359 | ID=Msa1202870-mRNA-1:cds;Parent=Msa1202870-mRNA-1 |
| chr8_1 | CDS | 56582095 | 56582176 | 56582095 | ID=Msa1202870-mRNA-1:cds;Parent=Msa1202870-mRNA-1 |
| chr8_1 | CDS | 56581722 | 56581839 | 56581722 | ID=Msa1202870-mRNA-1:cds;Parent=Msa1202870-mRNA-1 |
| chr8_1 | CDS | 56581575 | 56581623 | 56581575 | ID=Msa1202870-mRNA-1:cds;Parent=Msa1202870-mRNA-1 |
| chr8_1 | CDS | 56581250 | 56581498 | 56581250 | ID=Msa1202870-mRNA-1:cds;Parent=Msa1202870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
