AlfalfaGEDB | Msa1203080

M. sativa cultivar zhongmu-4 / Msa1203080

KEGG: -
GO: GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009937 GO:0009966 GO:0010029 GO:0010154 GO:0010431 GO:0010468 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0023051 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048316 GO:0048580 GO:0048583 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0097159 GO:0140110 GO:1900140 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2001141
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1203080	sp\|Q9SCQ6\|IDD2_ARATH	82.558	86	13	2	2	86	3	87	7.94e-39	146
Msa1203080	sp\|Q9SCQ6\|IDD2_ARATH	42.751	269	88	10	89	355	245	449	1.82e-36	140

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1203080	A0A396GNR0	100.000	86	0	0	1	86	1	86	8.01e-51	187
Msa1203080	A0A396GNR0	97.080	274	8	0	84	357	246	519	0.0	522

TFs/TRs:

Gene ID	Type	Classification
Msa1203080	TF	C2H2

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1203080	MtrunA17_Chr8g0373541	97.080	274	8	0	84	357	246	519	0.0	522
Msa1203080	MtrunA17_Chr8g0373541	100.000	86	0	0	1	86	1	86	1.54e-54	187
Msa1203080	MtrunA17_Chr2g0330171	60.606	99	23	1	4	86	1	99	1.15e-31	124
Msa1203080	MtrunA17_Chr8g0342421	60.606	99	24	2	3	86	17	115	3.54e-31	123
Msa1203080	MtrunA17_Chr1g0185121	65.909	88	25	1	4	86	6	93	1.15e-30	121
Msa1203080	MtrunA17_Chr7g0263941	87.931	58	7	0	29	86	30	87	3.87e-30	119
Msa1203080	MtrunA17_Chr4g0029521	66.250	80	23	1	11	86	12	91	4.07e-30	120
Msa1203080	MtrunA17_Chr3g0141431	86.207	58	8	0	29	86	18	75	8.72e-30	118
Msa1203080	MtrunA17_Chr3g0141431	42.149	121	57	4	211	331	300	407	3.72e-14	73.2
Msa1203080	MtrunA17_Chr1g0181381	80.303	66	8	1	26	86	26	91	1.10e-29	119
Msa1203080	MtrunA17_Chr1g0191991	92.857	56	4	0	31	86	61	116	1.51e-29	119
Msa1203080	MtrunA17_Chr1g0151351	87.273	55	7	0	32	86	40	94	3.02e-28	114
Msa1203080	MtrunA17_Chr1g0199101	80.357	56	11	0	31	86	45	100	9.05e-27	111
Msa1203080	MtrunA17_Chr4g0040571	82.759	58	10	0	29	86	35	92	9.18e-27	110
Msa1203080	MtrunA17_Chr1g0163001	80.357	56	11	0	31	86	41	96	2.16e-25	107
Msa1203080	MtrunA17_Chr1g0162971	79.630	54	11	0	33	86	41	94	9.44e-25	104
Msa1203080	MtrunA17_Chr2g0326381	74.545	55	14	0	32	86	31	85	1.18e-24	103
Msa1203080	MtrunA17_Chr1g0210821	82.353	51	9	0	36	86	47	97	3.04e-24	103
Msa1203080	MtrunA17_Chr2g0324991	90.698	43	4	0	44	86	3	45	3.11e-22	91.7
Msa1203080	MtrunA17_Chr7g0268961	93.182	44	3	0	43	86	32	75	3.55e-22	97.4
Msa1203080	MtrunA17_Chr8g0375521	50.575	87	31	2	4	86	2	80	1.08e-20	92.8
Msa1203080	MtrunA17_Chr6g0479921	66.667	54	18	0	33	86	29	82	3.20e-20	91.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1203080	AT3G50700.1	82.558	86	13	2	2	86	3	87	8.08e-40	146
Msa1203080	AT3G50700.1	42.751	269	88	10	89	355	245	449	1.85e-37	140
Msa1203080	AT5G66730.1	46.570	277	101	10	90	357	262	500	1.41e-39	147
Msa1203080	AT5G66730.1	80.233	86	13	2	2	86	3	85	8.03e-39	144
Msa1203080	AT4G02670.2	57.944	107	34	3	8	103	21	127	3.03e-29	117
Msa1203080	AT4G02670.1	57.944	107	34	3	8	103	19	125	3.26e-29	117
Msa1203080	AT5G44160.1	70.588	85	23	2	4	86	6	90	1.79e-28	115
Msa1203080	AT3G13810.5	46.970	132	47	2	3	111	14	145	1.86e-28	116
Msa1203080	AT3G13810.4	46.970	132	47	2	3	111	19	150	1.99e-28	115
Msa1203080	AT3G13810.1	46.970	132	47	2	3	111	19	150	1.99e-28	115
Msa1203080	AT3G13810.6	47.328	131	46	2	4	111	1	131	2.42e-28	115
Msa1203080	AT1G55110.3	58.763	97	27	3	3	86	20	116	3.16e-28	114
Msa1203080	AT1G55110.1	58.763	97	27	3	3	86	20	116	3.16e-28	114
Msa1203080	AT1G55110.2	58.763	97	27	3	3	86	20	116	3.16e-28	114
Msa1203080	AT5G03150.1	62.353	85	30	1	33	115	53	137	3.44e-28	115
Msa1203080	AT1G03840.1	86.207	58	8	0	29	86	37	94	6.24e-28	114
Msa1203080	AT3G45260.2	69.565	69	19	1	33	101	39	105	3.96e-26	108
Msa1203080	AT3G45260.1	69.565	69	19	1	33	101	39	105	3.96e-26	108
Msa1203080	AT5G60470.2	80.702	57	11	0	30	86	41	97	1.30e-25	107
Msa1203080	AT5G60470.3	80.702	57	11	0	30	86	37	93	1.33e-25	107
Msa1203080	AT1G14580.1	73.770	61	16	0	26	86	46	106	1.40e-25	107
Msa1203080	AT1G14580.2	73.770	61	16	0	26	86	46	106	1.40e-25	107
Msa1203080	AT1G14580.3	73.770	61	16	0	26	86	60	120	1.62e-25	107
Msa1203080	AT2G02080.1	76.786	56	13	0	31	86	52	107	1.96e-25	107
Msa1203080	AT2G02080.4	76.786	56	13	0	31	86	52	107	1.96e-25	107
Msa1203080	AT2G02080.5	76.786	56	13	0	31	86	52	107	1.96e-25	107
Msa1203080	AT2G02080.3	76.786	56	13	0	31	86	52	107	1.96e-25	107
Msa1203080	AT1G03840.2	82.759	58	8	1	29	86	37	92	8.26e-25	105
Msa1203080	AT2G02070.2	79.630	54	11	0	33	86	52	105	7.50e-24	103
Msa1203080	AT2G02070.1	79.630	54	11	0	33	86	52	105	7.50e-24	103
Msa1203080	AT3G13810.3	64.286	70	23	1	44	111	68	137	5.22e-22	97.4
Msa1203080	AT3G13810.2	64.286	70	23	1	44	111	82	151	5.77e-22	97.4
Msa1203080	AT5G44160.2	90.909	44	4	0	43	86	8	51	2.68e-21	94.7
Msa1203080	AT1G68130.1	68.519	54	17	0	33	86	41	94	1.18e-20	92.8
Msa1203080	AT1G25250.3	66.667	54	18	0	33	86	33	86	3.25e-20	91.3
Msa1203080	AT2G01940.1	64.815	54	19	0	33	86	44	97	4.29e-20	91.7
Msa1203080	AT2G01940.3	64.815	54	19	0	33	86	44	97	4.43e-20	91.3
Msa1203080	AT5G60470.1	61.905	63	24	0	24	86	26	88	6.79e-20	90.9
Msa1203080	AT1G25250.1	67.391	46	15	0	41	86	18	63	3.52e-17	82.4
Msa1203080	AT2G02080.6	83.333	30	5	0	57	86	1	30	2.75e-12	68.2
Msa1203080	AT2G02080.2	83.333	30	5	0	57	86	1	30	2.75e-12	68.2

Find 142 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TAATTATTCTATATTCTTTC+AGG	0.141832	8_1:+56864350	Msa1203080:three_prime_UTR
ATATGGTTGTCTTAAGATTT+AGG	0.166620	8_1:+56864075	Msa1203080:three_prime_UTR
CTTCCTTGTGACGGTGATTC+TGG	0.189616	8_1:+56863505	Msa1203080:CDS
GGAAGAAGTTCATGATATTT+TGG	0.210666	8_1:+56863733	Msa1203080:exon
TTGTGGTTCCTCTATGATTT+GGG	0.227141	8_1:-56862951	None:intergenic
ACACAGGCTGTGAGAAATTA+AGG	0.244185	8_1:+56864044	Msa1203080:three_prime_UTR
GCCTCTCTGCTTCGCGGGCT+TGG	0.251735	8_1:+56863367	Msa1203080:CDS
GAAGAAAGACTATATATTAA+AGG	0.258233	8_1:+56863974	Msa1203080:three_prime_UTR
TCTCAACCTATTCCCTCTTT+AGG	0.265115	8_1:+56864382	Msa1203080:three_prime_UTR
GTCTTTCTTCTGGCATTATA+AGG	0.270969	8_1:-56863961	None:intergenic
CTTGTGGTTCCTCTATGATT+TGG	0.282265	8_1:-56862952	None:intergenic
CAACTACTAGTGTTATTATC+AGG	0.290858	8_1:+56863765	Msa1203080:three_prime_UTR
GACAATGTTTCCACAGCTTC+AGG	0.299307	8_1:+56861975	Msa1203080:CDS
TATGGTTGTCTTAAGATTTA+GGG	0.302414	8_1:+56864076	Msa1203080:three_prime_UTR
CGTAGCTGTAGGTATAAATT+AGG	0.307449	8_1:+56864188	Msa1203080:three_prime_UTR
CTAGGATTGGGGATGGCTGC+TGG	0.321231	8_1:+56863592	Msa1203080:CDS
TACATCCCATGGACCTAATT+AGG	0.335283	8_1:-56863144	None:intergenic
TATTCCTCAGATGGATGATT+TGG	0.337901	8_1:+56864163	Msa1203080:three_prime_UTR
TTAATATATAGTCTTTCTTC+TGG	0.340090	8_1:-56863971	None:intergenic
CTAAATAAAGCTACCTAAAG+AGG	0.342916	8_1:-56864395	None:intergenic
ACGCTTGATTTCCTAGGATT+GGG	0.343047	8_1:+56863580	Msa1203080:CDS
ATGGCTGCTGGTGGCAGTGC+CGG	0.355268	8_1:+56863604	Msa1203080:CDS
AAGGTACAATGTGCTTGTTT+TGG	0.357051	8_1:+56864018	Msa1203080:three_prime_UTR
CTTTGCCTTTCGACCAATCA+TGG	0.360767	8_1:+56863220	Msa1203080:CDS
CAATATGCAATATGCAACTA+TGG	0.365464	8_1:+56863888	Msa1203080:three_prime_UTR
AGAGCAATCACCTCTGCTTC+TGG	0.372321	8_1:-56862178	None:intergenic
CATAGTTGCATATTGCATAT+TGG	0.373692	8_1:-56863887	None:intergenic
GAGTTCTCTGGCAAAGATAT+TGG	0.378609	8_1:+56863712	Msa1203080:CDS
TGCAACAGGTAATGTGCAAA+TGG	0.385687	8_1:+56863916	Msa1203080:three_prime_UTR
AACGCTTGATTTCCTAGGAT+TGG	0.393689	8_1:+56863579	Msa1203080:CDS
TTGGGGACTCCGTCAATGTT+TGG	0.394894	8_1:+56863544	Msa1203080:CDS
TTCCACGTTTGTCCATTGTT+TGG	0.395965	8_1:+56864266	Msa1203080:three_prime_UTR
ATAGCTATAGTTTATAGCTT+AGG	0.399501	8_1:+56861909	Msa1203080:five_prime_UTR
TCTTCTGCTTCCACTTCATC+TGG	0.399761	8_1:+56863400	Msa1203080:CDS
AGTTTAGTTTCAGCAGGACT+TGG	0.406784	8_1:+56863475	Msa1203080:CDS
AAATTAAGGGTATGTGAATA+TGG	0.414970	8_1:+56864058	Msa1203080:three_prime_UTR
GGACTAAAGGAATTGATGTT+GGG	0.416175	8_1:+56863526	Msa1203080:CDS
CAGACAACGCTTGATTTCCT+AGG	0.417637	8_1:+56863574	Msa1203080:CDS
GATAGCCTGCATTGGGGTCT+CGG	0.418830	8_1:+56863430	Msa1203080:CDS
TGGAATTATTGTCACATTTG+TGG	0.424814	8_1:+56864241	Msa1203080:three_prime_UTR
AGCTGAGAAATTTGTAGGAC+GGG	0.433442	8_1:-56863173	None:intergenic
GAAAATTGATGATCCATGAT+TGG	0.434295	8_1:-56863233	None:intergenic
ACCGCAGCAGCCGCATCCTT+CGG	0.436819	8_1:+56863682	Msa1203080:CDS
TTTGTAGCTAACAACGTTGT+TGG	0.437085	8_1:-56862205	None:intergenic
AAGCACATTGTACCTTGTTA+AGG	0.439079	8_1:-56864011	None:intergenic
CAAACGCCTCTCTGCTTCGC+GGG	0.440537	8_1:+56863362	Msa1203080:CDS
GCAACAGGTAATGTGCAAAT+GGG	0.445106	8_1:+56863917	Msa1203080:three_prime_UTR
CCCAATGCAGGCTATCTTGT+TGG	0.446194	8_1:-56863423	None:intergenic
AAGCTACCTAAAGAGGGAAT+AGG	0.450917	8_1:-56864388	None:intergenic
GCATTGGGGTCTCGGACAAA+TGG	0.454354	8_1:+56863438	Msa1203080:CDS
GGTTCTAGTTTAGTTTCAGC+AGG	0.456585	8_1:+56863469	Msa1203080:CDS
CCAACAAGATAGCCTGCATT+GGG	0.458036	8_1:+56863423	Msa1203080:CDS
AAATCAAGCGTTGTCTGCTT+AGG	0.462981	8_1:-56863568	None:intergenic
CAACTATGGATCAATGCAAC+AGG	0.464041	8_1:+56863902	Msa1203080:three_prime_UTR
GCTGGTGGCAGTGCCGGTGG+AGG	0.466700	8_1:+56863610	Msa1203080:CDS
AATTGGCGGAGGCAGTGGTT+TGG	0.468893	8_1:+56863654	Msa1203080:CDS
CATAGAAGAGGACATAATCT+AGG	0.470729	8_1:+56862286	Msa1203080:CDS
TGGACTAAAGGAATTGATGT+TGG	0.472296	8_1:+56863525	Msa1203080:CDS
GCTGATGTGTTGGCACGTAT+TGG	0.475745	8_1:-56863279	None:intergenic
GTTTCAGCAGGACTTGGACT+AGG	0.476162	8_1:+56863481	Msa1203080:CDS
GGAGGAGCTGAGAAATTTGT+AGG	0.477793	8_1:-56863178	None:intergenic
ACATCAATTGGCGGAGGCAG+TGG	0.478880	8_1:+56863649	Msa1203080:CDS
GCAGCCGCATCCTTCGGTAA+TGG	0.482125	8_1:+56863688	Msa1203080:CDS
ACAAACGCCTCTCTGCTTCG+CGG	0.487979	8_1:+56863361	Msa1203080:CDS
TGAACGCCGGTGCCTGAGGT+TGG	0.492139	8_1:-56863117	None:intergenic
TTCGGTAATGGAGAGTTCTC+TGG	0.494928	8_1:+56863700	Msa1203080:CDS
TCTGCACTTATCACATCAAT+TGG	0.498574	8_1:+56863637	Msa1203080:CDS
CAGTGACCTAATTAGGTCCA+TGG	0.499064	8_1:+56863138	Msa1203080:CDS
AGAAATCTCCCAGGAATGCC+AGG	0.500143	8_1:+56862068	Msa1203080:CDS
TTCTGCGAGTCTCCAACCTC+AGG	0.501471	8_1:+56863105	Msa1203080:CDS
GCTGCTGGTGGCAGTGCCGG+TGG	0.503660	8_1:+56863607	Msa1203080:CDS
CAAATCATGTATTCCTCAGA+TGG	0.506633	8_1:+56864154	Msa1203080:three_prime_UTR
CAGCAGCCATCCCCAATCCT+AGG	0.507214	8_1:-56863591	None:intergenic
AATGCAGTAGCAGACATTGC+GGG	0.510173	8_1:-56863304	None:intergenic
CATTGTCTAAATCAACCATT+GGG	0.515965	8_1:-56861959	None:intergenic
CACAGGCTGTGAGAAATTAA+GGG	0.516414	8_1:+56864045	Msa1203080:three_prime_UTR
ACATTGTCTAAATCAACCAT+TGG	0.516475	8_1:-56861960	None:intergenic
GCCAACAAGATAGCCTGCAT+TGG	0.521817	8_1:+56863422	Msa1203080:CDS
GCTCGCAAACACACCAGTGC+TGG	0.521876	8_1:-56863056	None:intergenic
GAAGCTAGCATCTCTTCCTC+TGG	0.524982	8_1:+56861999	Msa1203080:CDS
GGCTGTGCTACTACCAGCAC+TGG	0.526425	8_1:+56863043	Msa1203080:CDS
AGAGAGATCGCCTCGGACGA+TGG	0.526923	8_1:-56863199	None:intergenic
CGCTTGATTTCCTAGGATTG+GGG	0.528014	8_1:+56863581	Msa1203080:CDS
GTTGGGTTGCTAATGCAACT+TGG	0.541619	8_1:-56864421	None:intergenic
AGTGGAGCATTTGAAGATCA+TGG	0.543917	8_1:+56864101	Msa1203080:three_prime_UTR
ATTGCGGGCGGCTGATGTGT+TGG	0.544981	8_1:-56863289	None:intergenic
CTAATTTATACCTACAGCTA+CGG	0.546589	8_1:-56864187	None:intergenic
TCACTGAACGCCGGTGCCTG+AGG	0.547816	8_1:-56863121	None:intergenic
ATCTTGTTGGCCAGATGAAG+TGG	0.548411	8_1:-56863410	None:intergenic
TGCTTAGGACCAAACATTGA+CGG	0.548417	8_1:-56863553	None:intergenic
TGACGGTGATTCTGGACTAA+AGG	0.548568	8_1:+56863513	Msa1203080:CDS
TGATTTCCTAGGATTGGGGA+TGG	0.555167	8_1:+56863585	Msa1203080:CDS
ACCGAAGGATGCGGCTGCTG+CGG	0.555962	8_1:-56863683	None:intergenic
ATGATCCATGATTGGTCGAA+AGG	0.558830	8_1:-56863225	None:intergenic
GTCTTAAGATTTAGGGACAG+TGG	0.559908	8_1:+56864083	Msa1203080:three_prime_UTR
TTTGTCCGAGACCCCAATGC+AGG	0.560302	8_1:-56863435	None:intergenic
GGATTGGGGATGGCTGCTGG+TGG	0.560903	8_1:+56863595	Msa1203080:CDS
AACTACTAGTGTTATTATCA+GGG	0.565154	8_1:+56863766	Msa1203080:three_prime_UTR
TGTGGTTCCTCTATGATTTG+GGG	0.567711	8_1:-56862950	None:intergenic
GTGTGTGAAATATGTAACAA+AGG	0.568738	8_1:+56862235	Msa1203080:CDS
CTCTCCATTACCGAAGGATG+CGG	0.569694	8_1:-56863692	None:intergenic
GAAACTAAACTAGAACCCTC+TGG	0.570954	8_1:-56863463	None:intergenic
AAGTGCAGACAGGCCTCCAC+CGG	0.571447	8_1:-56863623	None:intergenic
GAGCTGAGAAATTTGTAGGA+CGG	0.573665	8_1:-56863174	None:intergenic
GCTAGCTTCACCTGAAGCTG+TGG	0.576380	8_1:-56861985	None:intergenic
GGTTCCTCTATGATTTGGGG+TGG	0.577325	8_1:-56862947	None:intergenic
TAAATAAAGCTACCTAAAGA+GGG	0.577435	8_1:-56864394	None:intergenic
TTGAATATTGTTATTACCAG+AGG	0.581923	8_1:-56862015	None:intergenic
GCACTTATCACATCAATTGG+CGG	0.584895	8_1:+56863640	Msa1203080:CDS
TTTGAAGTTGCAATTGACAT+GGG	0.586590	8_1:+56863838	Msa1203080:three_prime_UTR
AATCTTCAACTACATAGAAG+AGG	0.593928	8_1:+56862274	Msa1203080:CDS
TCATATCAAATATTTCCCAA+TGG	0.594960	8_1:+56861944	Msa1203080:exon
TTGATGTGATAAGTGCAGAC+AGG	0.595535	8_1:-56863633	None:intergenic
ACGGGGATCTGTACATCCCA+TGG	0.596187	8_1:-56863155	None:intergenic
AGTGACCTAATTAGGTCCAT+GGG	0.596857	8_1:+56863139	Msa1203080:CDS
CTCAGCTCCTCCATCGTCCG+AGG	0.601921	8_1:+56863189	Msa1203080:CDS
AAATCCACCCCAAATCATAG+AGG	0.606558	8_1:+56862943	Msa1203080:CDS
GACTAAAGGAATTGATGTTG+GGG	0.606985	8_1:+56863527	Msa1203080:CDS
CAACAGGTAATGTGCAAATG+GGG	0.617469	8_1:+56863918	Msa1203080:three_prime_UTR
GGACTAGGTCTTCCTTGTGA+CGG	0.618221	8_1:+56863496	Msa1203080:CDS
ACGCATTAAGTGCCAAACAA+TGG	0.618876	8_1:-56864278	None:intergenic
CTTATCACATCAATTGGCGG+AGG	0.628299	8_1:+56863643	Msa1203080:CDS
ATGATTTGGTCCGTAGCTGT+AGG	0.628316	8_1:+56864177	Msa1203080:three_prime_UTR
GAGTCTCCAACCTCAGGCAC+CGG	0.629519	8_1:+56863111	Msa1203080:CDS
AGTACTAGCTCAACAAGCAA+CGG	0.630248	8_1:+56863022	Msa1203080:CDS
GCTGAGAAATTTGTAGGACG+GGG	0.631204	8_1:-56863172	None:intergenic
AAGAAAATGTGACCTTAACA+AGG	0.633723	8_1:+56863999	Msa1203080:three_prime_UTR
GAGATCGCCTCGGACGATGG+AGG	0.640921	8_1:-56863196	None:intergenic
TCTCGGACAAATGGAACCAG+AGG	0.640999	8_1:+56863447	Msa1203080:CDS
TAACAATCTTTGTACAAACA+AGG	0.644695	8_1:-56861876	None:intergenic
AGAGAACTCTCCATTACCGA+AGG	0.648524	8_1:-56863698	None:intergenic
TAATGCAGTAGCAGACATTG+CGG	0.648583	8_1:-56863305	None:intergenic
CGGACCAAATCATCCATCTG+AGG	0.650001	8_1:-56864167	None:intergenic
AGTCCAGAATCACCGTCACA+AGG	0.655397	8_1:-56863508	None:intergenic
TCCAAGCCCGCGAAGCAGAG+AGG	0.660190	8_1:-56863368	None:intergenic
CTAATTAGGTCACTGAACGC+CGG	0.668870	8_1:-56863130	None:intergenic
GCAGTAGCAGACATTGCGGG+CGG	0.680254	8_1:-56863301	None:intergenic
CTCGGACAAATGGAACCAGA+GGG	0.680399	8_1:+56863448	Msa1203080:CDS
CAACAAGATAGCCTGCATTG+GGG	0.703664	8_1:+56863424	Msa1203080:CDS
AAGGCAAAGAGAGATCGCCT+CGG	0.703738	8_1:-56863206	None:intergenic
TGCCAAACAATGGACAAACG+TGG	0.705749	8_1:-56864268	None:intergenic
GTAGTAGTAACAACAACTTG+TGG	0.766984	8_1:-56862968	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTTTTTTTTTTGTTTGCTA+GGG	-	chr8_1:56861804-56861823	None:intergenic	15.0%
!!!	TATTTATTAATTTTTGTACC+TGG	-	chr8_1:56862089-56862108	None:intergenic	15.0%
!!!	CAAATTCAAAATTTTGTTTT+TGG	+	chr8_1:56862461-56862480	Msa1203080:intron	15.0%
!!	TTTAATGTAACATAAAAGAA+AGG	+	chr8_1:56862760-56862779	Msa1203080:intron	15.0%
!!	ATTATAATCATCAACTAATA+GGG	-	chr8_1:56862839-56862858	None:intergenic	15.0%
!!	AATTATAATCATCAACTAAT+AGG	-	chr8_1:56862840-56862859	None:intergenic	15.0%
!!	TAATTATTCTATATTCTTTC+AGG	+	chr8_1:56864350-56864369	Msa1203080:three_prime_UTR	15.0%
!!	TTACTACTTATCAAAAAAAT+GGG	-	chr8_1:56864446-56864465	None:intergenic	15.0%
!!	TTTACTACTTATCAAAAAAA+TGG	-	chr8_1:56864447-56864466	None:intergenic	15.0%
!!!	GTTTTTTTTTTTTGTTTGCT+AGG	-	chr8_1:56861805-56861824	None:intergenic	20.0%
!!!	AAATCAGTAAGAAACTTTTT+TGG	-	chr8_1:56861835-56861854	None:intergenic	20.0%
!!	TGAAAATAAATCCCTTAAAA+AGG	+	chr8_1:56862611-56862630	Msa1203080:intron	20.0%
!!!	TACAAAAAACACCTTTTTAA+GGG	-	chr8_1:56862625-56862644	None:intergenic	20.0%
!!!	TTACAAAAAACACCTTTTTA+AGG	-	chr8_1:56862626-56862645	None:intergenic	20.0%
!!	TTAATATATAGTCTTTCTTC+TGG	-	chr8_1:56863974-56863993	None:intergenic	20.0%
!!	GAAGAAAGACTATATATTAA+AGG	+	chr8_1:56863974-56863993	Msa1203080:three_prime_UTR	20.0%
!	TAACAATCTTTGTACAAACA+AGG	-	chr8_1:56861879-56861898	None:intergenic	25.0%
!	ATAGCTATAGTTTATAGCTT+AGG	+	chr8_1:56861909-56861928	Msa1203080:five_prime_UTR	25.0%
!	TCATATCAAATATTTCCCAA+TGG	+	chr8_1:56861944-56861963	Msa1203080:exon	25.0%
!!	TTGAATATTGTTATTACCAG+AGG	-	chr8_1:56862018-56862037	None:intergenic	25.0%
!!!	AGATTTCTTTTTTTCTTGGT+GGG	-	chr8_1:56862056-56862075	None:intergenic	25.0%
!!!	AAAGTGCAATTTTTGTTTAC+TGG	+	chr8_1:56862384-56862403	Msa1203080:intron	25.0%
!!!	AAGTGCAATTTTTGTTTACT+GGG	+	chr8_1:56862385-56862404	Msa1203080:intron	25.0%
!!!	TTTTTTTGTCATGTTTGATG+TGG	+	chr8_1:56862421-56862440	Msa1203080:intron	25.0%
!!!	GTGTTTAGTATTTTTTTGTC+TGG	+	chr8_1:56862510-56862529	Msa1203080:intron	25.0%
!	GTTTGATCTAAATTATGCAT+TGG	+	chr8_1:56862648-56862667	Msa1203080:intron	25.0%
!!!	AGAAGATTTGTTTTTAAGAG+TGG	+	chr8_1:56862699-56862718	Msa1203080:intron	25.0%
!!	AATCATGGATCATCAATTTT+CGG	+	chr8_1:56863235-56863254	Msa1203080:CDS	25.0%
!!	AACTACTAGTGTTATTATCA+GGG	+	chr8_1:56863766-56863785	Msa1203080:three_prime_UTR	25.0%
!!	AAATTAAGGGTATGTGAATA+TGG	+	chr8_1:56864058-56864077	Msa1203080:three_prime_UTR	25.0%
!	ATATGGTTGTCTTAAGATTT+AGG	+	chr8_1:56864075-56864094	Msa1203080:three_prime_UTR	25.0%
!	TATGGTTGTCTTAAGATTTA+GGG	+	chr8_1:56864076-56864095	Msa1203080:three_prime_UTR	25.0%
!!!	CTAGTAGTAGTAGTTTTATT+TGG	+	chr8_1:56864214-56864233	Msa1203080:three_prime_UTR	25.0%
!!!	TAGTAGTTTTATTTGGTTGT+TGG	+	chr8_1:56864221-56864240	Msa1203080:three_prime_UTR	25.0%
!	TAAATAAAGCTACCTAAAGA+GGG	-	chr8_1:56864397-56864416	None:intergenic	25.0%
!!	ACTTATCAAAAAAATGGGTT+GGG	-	chr8_1:56864441-56864460	None:intergenic	25.0%
!	TACTTATCAAAAAAATGGGT+TGG	-	chr8_1:56864442-56864461	None:intergenic	25.0%
!!!	AAGCTCTTTCTTGTTTTGTT+TGG	-	chr8_1:56861759-56861778	None:intergenic	30.0%
!!!	CTAGGGTTTGTGTATTTTTT+TGG	-	chr8_1:56861787-56861806	None:intergenic	30.0%
	CATTGTCTAAATCAACCATT+GGG	-	chr8_1:56861962-56861981	None:intergenic	30.0%
	ACATTGTCTAAATCAACCAT+TGG	-	chr8_1:56861963-56861982	None:intergenic	30.0%
!!!	GAGATTTCTTTTTTTCTTGG+TGG	-	chr8_1:56862057-56862076	None:intergenic	30.0%
!!!	TGGGAGATTTCTTTTTTTCT+TGG	-	chr8_1:56862060-56862079	None:intergenic	30.0%
	AAGAAAAAAAGAAATCTCCC+AGG	+	chr8_1:56862059-56862078	Msa1203080:CDS	30.0%
	GTGTGTGAAATATGTAACAA+AGG	+	chr8_1:56862235-56862254	Msa1203080:CDS	30.0%
	AATCTTCAACTACATAGAAG+AGG	+	chr8_1:56862274-56862293	Msa1203080:CDS	30.0%
!!	GGTGTTATTGTTTGTTTATG+TGG	+	chr8_1:56862482-56862501	Msa1203080:intron	30.0%
	ATTGTTTGTTTATGTGGTCT+TGG	+	chr8_1:56862488-56862507	Msa1203080:intron	30.0%
!!	AAATTATGCATTGGTTGTCA+AGG	+	chr8_1:56862657-56862676	Msa1203080:intron	30.0%
	AACACATAGACAAGTAAAGT+TGG	-	chr8_1:56862788-56862807	None:intergenic	30.0%
!	GAAAATTGATGATCCATGAT+TGG	-	chr8_1:56863236-56863255	None:intergenic	30.0%
!	GGAAGAAGTTCATGATATTT+TGG	+	chr8_1:56863733-56863752	Msa1203080:exon	30.0%
!	CAACTACTAGTGTTATTATC+AGG	+	chr8_1:56863765-56863784	Msa1203080:three_prime_UTR	30.0%
!!!	TATTATCAGGGCAACTTTTT+TGG	+	chr8_1:56863778-56863797	Msa1203080:three_prime_UTR	30.0%
!!!	TTTTGAAGTTGCAATTGACA+TGG	+	chr8_1:56863837-56863856	Msa1203080:three_prime_UTR	30.0%
!	TTTGAAGTTGCAATTGACAT+GGG	+	chr8_1:56863838-56863857	Msa1203080:three_prime_UTR	30.0%
	CATAGTTGCATATTGCATAT+TGG	-	chr8_1:56863890-56863909	None:intergenic	30.0%
	CAATATGCAATATGCAACTA+TGG	+	chr8_1:56863888-56863907	Msa1203080:three_prime_UTR	30.0%
	AAGAAAATGTGACCTTAACA+AGG	+	chr8_1:56863999-56864018	Msa1203080:three_prime_UTR	30.0%
!!!	ATGGTCTTGTTTTTGGTTTA+TGG	+	chr8_1:56864120-56864139	Msa1203080:three_prime_UTR	30.0%
	CTAATTTATACCTACAGCTA+CGG	-	chr8_1:56864190-56864209	None:intergenic	30.0%
	TGGAATTATTGTCACATTTG+TGG	+	chr8_1:56864241-56864260	Msa1203080:three_prime_UTR	30.0%
	CTAAATAAAGCTACCTAAAG+AGG	-	chr8_1:56864398-56864417	None:intergenic	30.0%
!!!	CTTTTTTTCTTGGTGGGTTT+TGG	-	chr8_1:56862050-56862069	None:intergenic	35.0%
	TTTGTAGCTAACAACGTTGT+TGG	-	chr8_1:56862208-56862227	None:intergenic	35.0%
	CATAGAAGAGGACATAATCT+AGG	+	chr8_1:56862286-56862305	Msa1203080:CDS	35.0%
	GACATAATCTAGGTAGATAG+TGG	+	chr8_1:56862296-56862315	Msa1203080:intron	35.0%
!!!	GACTTGTTTTTGTGAGAAAC+AGG	+	chr8_1:56862549-56862568	Msa1203080:intron	35.0%
	ACTTGTCTATGTGTTATGAG+TGG	+	chr8_1:56862793-56862812	Msa1203080:intron	35.0%
	AAGAAAAAGCAAAGCAAAGC+AGG	-	chr8_1:56862890-56862909	None:intergenic	35.0%
	TTGTGGTTCCTCTATGATTT+GGG	-	chr8_1:56862954-56862973	None:intergenic	35.0%
	GTAGTAGTAACAACAACTTG+TGG	-	chr8_1:56862971-56862990	None:intergenic	35.0%
	ACTTCAAAAAGCAGCTCAAA+TGG	+	chr8_1:56863327-56863346	Msa1203080:CDS	35.0%
	CTTCAAAAAGCAGCTCAAAT+GGG	+	chr8_1:56863328-56863347	Msa1203080:CDS	35.0%
	TGGACTAAAGGAATTGATGT+TGG	+	chr8_1:56863525-56863544	Msa1203080:CDS	35.0%
	GGACTAAAGGAATTGATGTT+GGG	+	chr8_1:56863526-56863545	Msa1203080:CDS	35.0%
	GACTAAAGGAATTGATGTTG+GGG	+	chr8_1:56863527-56863546	Msa1203080:CDS	35.0%
	TCTGCACTTATCACATCAAT+TGG	+	chr8_1:56863637-56863656	Msa1203080:CDS	35.0%
	GTCTTTCTTCTGGCATTATA+AGG	-	chr8_1:56863964-56863983	None:intergenic	35.0%
	AAGCACATTGTACCTTGTTA+AGG	-	chr8_1:56864014-56864033	None:intergenic	35.0%
!	AAGGTACAATGTGCTTGTTT+TGG	+	chr8_1:56864018-56864037	Msa1203080:three_prime_UTR	35.0%
!!!	GAAGATCATGGTCTTGTTTT+TGG	+	chr8_1:56864113-56864132	Msa1203080:three_prime_UTR	35.0%
	CAAATCATGTATTCCTCAGA+TGG	+	chr8_1:56864154-56864173	Msa1203080:three_prime_UTR	35.0%
	TATTCCTCAGATGGATGATT+TGG	+	chr8_1:56864163-56864182	Msa1203080:three_prime_UTR	35.0%
	CGTAGCTGTAGGTATAAATT+AGG	+	chr8_1:56864188-56864207	Msa1203080:three_prime_UTR	35.0%
!!!	TTCTTGGTGGGTTTTGGAAT+TGG	-	chr8_1:56862044-56862063	None:intergenic	40.0%
!	TTTTTGTACCTGGCATTCCT+GGG	-	chr8_1:56862079-56862098	None:intergenic	40.0%
!	ATTTTTGTACCTGGCATTCC+TGG	-	chr8_1:56862080-56862099	None:intergenic	40.0%
!!	TTTTGAAGATCCAGAAGCAG+AGG	+	chr8_1:56862168-56862187	Msa1203080:intron	40.0%
!	GGATCAAGTGATCTGAGATT+CGG	+	chr8_1:56862570-56862589	Msa1203080:intron	40.0%
!	GATCAAGTGATCTGAGATTC+GGG	+	chr8_1:56862571-56862590	Msa1203080:intron	40.0%
!	ATCAAGTGATCTGAGATTCG+GGG	+	chr8_1:56862572-56862591	Msa1203080:intron	40.0%
!!	ATGATTTGGGGTGGATTTTC+TGG	-	chr8_1:56862941-56862960	None:intergenic	40.0%
	AAATCCACCCCAAATCATAG+AGG	+	chr8_1:56862943-56862962	Msa1203080:CDS	40.0%
	TGTGGTTCCTCTATGATTTG+GGG	-	chr8_1:56862953-56862972	None:intergenic	40.0%
	CTTGTGGTTCCTCTATGATT+TGG	-	chr8_1:56862955-56862974	None:intergenic	40.0%
	AGTACTAGCTCAACAAGCAA+CGG	+	chr8_1:56863022-56863041	Msa1203080:CDS	40.0%
	AGTGACCTAATTAGGTCCAT+GGG	+	chr8_1:56863139-56863158	Msa1203080:CDS	40.0%
	TACATCCCATGGACCTAATT+AGG	-	chr8_1:56863147-56863166	None:intergenic	40.0%
	AGCTGAGAAATTTGTAGGAC+GGG	-	chr8_1:56863176-56863195	None:intergenic	40.0%
	GAGCTGAGAAATTTGTAGGA+CGG	-	chr8_1:56863177-56863196	None:intergenic	40.0%
!	ATGATCCATGATTGGTCGAA+AGG	-	chr8_1:56863228-56863247	None:intergenic	40.0%
!	GGATCATCAATTTTCGGAAC+AGG	+	chr8_1:56863241-56863260	Msa1203080:CDS	40.0%
!	TCATCAATTTTCGGAACAGG+AGG	+	chr8_1:56863244-56863263	Msa1203080:CDS	40.0%
!	CATCAATTTTCGGAACAGGA+GGG	+	chr8_1:56863245-56863264	Msa1203080:CDS	40.0%
	TAATGCAGTAGCAGACATTG+CGG	-	chr8_1:56863308-56863327	None:intergenic	40.0%
	GAAACTAAACTAGAACCCTC+TGG	-	chr8_1:56863466-56863485	None:intergenic	40.0%
!!	GGTTCTAGTTTAGTTTCAGC+AGG	+	chr8_1:56863469-56863488	Msa1203080:CDS	40.0%
!	AGTTTAGTTTCAGCAGGACT+TGG	+	chr8_1:56863475-56863494	Msa1203080:CDS	40.0%
	TGCTTAGGACCAAACATTGA+CGG	-	chr8_1:56863556-56863575	None:intergenic	40.0%
!	AAATCAAGCGTTGTCTGCTT+AGG	-	chr8_1:56863571-56863590	None:intergenic	40.0%
	AACGCTTGATTTCCTAGGAT+TGG	+	chr8_1:56863579-56863598	Msa1203080:CDS	40.0%
	ACGCTTGATTTCCTAGGATT+GGG	+	chr8_1:56863580-56863599	Msa1203080:CDS	40.0%
	TTGATGTGATAAGTGCAGAC+AGG	-	chr8_1:56863636-56863655	None:intergenic	40.0%
	GCACTTATCACATCAATTGG+CGG	+	chr8_1:56863640-56863659	Msa1203080:CDS	40.0%
	GAGTTCTCTGGCAAAGATAT+TGG	+	chr8_1:56863712-56863731	Msa1203080:CDS	40.0%
	CAACTATGGATCAATGCAAC+AGG	+	chr8_1:56863902-56863921	Msa1203080:three_prime_UTR	40.0%
	TGCAACAGGTAATGTGCAAA+TGG	+	chr8_1:56863916-56863935	Msa1203080:three_prime_UTR	40.0%
	GCAACAGGTAATGTGCAAAT+GGG	+	chr8_1:56863917-56863936	Msa1203080:three_prime_UTR	40.0%
	CAACAGGTAATGTGCAAATG+GGG	+	chr8_1:56863918-56863937	Msa1203080:three_prime_UTR	40.0%
	ACACAGGCTGTGAGAAATTA+AGG	+	chr8_1:56864044-56864063	Msa1203080:three_prime_UTR	40.0%
	CACAGGCTGTGAGAAATTAA+GGG	+	chr8_1:56864045-56864064	Msa1203080:three_prime_UTR	40.0%
	GTCTTAAGATTTAGGGACAG+TGG	+	chr8_1:56864083-56864102	Msa1203080:three_prime_UTR	40.0%
!	AGTGGAGCATTTGAAGATCA+TGG	+	chr8_1:56864101-56864120	Msa1203080:three_prime_UTR	40.0%
	TTCCACGTTTGTCCATTGTT+TGG	+	chr8_1:56864266-56864285	Msa1203080:three_prime_UTR	40.0%
	ACGCATTAAGTGCCAAACAA+TGG	-	chr8_1:56864281-56864300	None:intergenic	40.0%
	TCTCAACCTATTCCCTCTTT+AGG	+	chr8_1:56864382-56864401	Msa1203080:three_prime_UTR	40.0%
	AAGCTACCTAAAGAGGGAAT+AGG	-	chr8_1:56864391-56864410	None:intergenic	40.0%
	GACAATGTTTCCACAGCTTC+AGG	+	chr8_1:56861975-56861994	Msa1203080:CDS	45.0%
	CTAATTAGGTCACTGAACGC+CGG	-	chr8_1:56863133-56863152	None:intergenic	45.0%
	CAGTGACCTAATTAGGTCCA+TGG	+	chr8_1:56863138-56863157	Msa1203080:CDS	45.0%
	GCTGAGAAATTTGTAGGACG+GGG	-	chr8_1:56863175-56863194	None:intergenic	45.0%
	GGAGGAGCTGAGAAATTTGT+AGG	-	chr8_1:56863181-56863200	None:intergenic	45.0%
	CTTTGCCTTTCGACCAATCA+TGG	+	chr8_1:56863220-56863239	Msa1203080:CDS	45.0%
	AATGCAGTAGCAGACATTGC+GGG	-	chr8_1:56863307-56863326	None:intergenic	45.0%
	TCTTCTGCTTCCACTTCATC+TGG	+	chr8_1:56863400-56863419	Msa1203080:CDS	45.0%
	ATCTTGTTGGCCAGATGAAG+TGG	-	chr8_1:56863413-56863432	None:intergenic	45.0%
	CCAACAAGATAGCCTGCATT+GGG	+	chr8_1:56863423-56863442	Msa1203080:CDS	45.0%
	CAACAAGATAGCCTGCATTG+GGG	+	chr8_1:56863424-56863443	Msa1203080:CDS	45.0%
	TGACGGTGATTCTGGACTAA+AGG	+	chr8_1:56863513-56863532	Msa1203080:CDS	45.0%
	CAGACAACGCTTGATTTCCT+AGG	+	chr8_1:56863574-56863593	Msa1203080:CDS	45.0%
	CGCTTGATTTCCTAGGATTG+GGG	+	chr8_1:56863581-56863600	Msa1203080:CDS	45.0%
	TGATTTCCTAGGATTGGGGA+TGG	+	chr8_1:56863585-56863604	Msa1203080:CDS	45.0%
	CTTATCACATCAATTGGCGG+AGG	+	chr8_1:56863643-56863662	Msa1203080:CDS	45.0%
	AGAGAACTCTCCATTACCGA+AGG	-	chr8_1:56863701-56863720	None:intergenic	45.0%
!!	TTCGGTAATGGAGAGTTCTC+TGG	+	chr8_1:56863700-56863719	Msa1203080:CDS	45.0%
!!!	GTGCTTGTTTTGGACAACAC+AGG	+	chr8_1:56864028-56864047	Msa1203080:three_prime_UTR	45.0%
!!	ATGATTTGGTCCGTAGCTGT+AGG	+	chr8_1:56864177-56864196	Msa1203080:three_prime_UTR	45.0%
	TGCCAAACAATGGACAAACG+TGG	-	chr8_1:56864271-56864290	None:intergenic	45.0%
!	GTTGGGTTGCTAATGCAACT+TGG	-	chr8_1:56864424-56864443	None:intergenic	45.0%
	GAAGCTAGCATCTCTTCCTC+TGG	+	chr8_1:56861999-56862018	Msa1203080:CDS	50.0%
	AGAAATCTCCCAGGAATGCC+AGG	+	chr8_1:56862068-56862087	Msa1203080:CDS	50.0%
	AGAGCAATCACCTCTGCTTC+TGG	-	chr8_1:56862181-56862200	None:intergenic	50.0%
	TAGTGGTGTGTCCTCTGCTT+TGG	+	chr8_1:56862313-56862332	Msa1203080:intron	50.0%
	CTTCTGAGTCTCCAAAGCAG+AGG	-	chr8_1:56862327-56862346	None:intergenic	50.0%
!!	GCTTTGGAGACTCAGAAGCT+AGG	+	chr8_1:56862329-56862348	Msa1203080:intron	50.0%
!	GGTTCCTCTATGATTTGGGG+TGG	-	chr8_1:56862950-56862969	None:intergenic	50.0%
	CGGCGTTCAGTGACCTAATT+AGG	+	chr8_1:56863131-56863150	Msa1203080:CDS	50.0%
	AAGGCAAAGAGAGATCGCCT+CGG	-	chr8_1:56863209-56863228	None:intergenic	50.0%
!	AATTTTCGGAACAGGAGGGC+AGG	+	chr8_1:56863249-56863268	Msa1203080:CDS	50.0%
!	GCTGATGTGTTGGCACGTAT+TGG	-	chr8_1:56863282-56863301	None:intergenic	50.0%
	GCCAACAAGATAGCCTGCAT+TGG	+	chr8_1:56863422-56863441	Msa1203080:CDS	50.0%
	CCCAATGCAGGCTATCTTGT+TGG	-	chr8_1:56863426-56863445	None:intergenic	50.0%
	TCTCGGACAAATGGAACCAG+AGG	+	chr8_1:56863447-56863466	Msa1203080:CDS	50.0%
	CTCGGACAAATGGAACCAGA+GGG	+	chr8_1:56863448-56863467	Msa1203080:CDS	50.0%
	GTTTCAGCAGGACTTGGACT+AGG	+	chr8_1:56863481-56863500	Msa1203080:CDS	50.0%
	GGACTAGGTCTTCCTTGTGA+CGG	+	chr8_1:56863496-56863515	Msa1203080:CDS	50.0%
	CTTCCTTGTGACGGTGATTC+TGG	+	chr8_1:56863505-56863524	Msa1203080:CDS	50.0%
	AGTCCAGAATCACCGTCACA+AGG	-	chr8_1:56863511-56863530	None:intergenic	50.0%
	TTGGGGACTCCGTCAATGTT+TGG	+	chr8_1:56863544-56863563	Msa1203080:CDS	50.0%
	CTCTCCATTACCGAAGGATG+CGG	-	chr8_1:56863695-56863714	None:intergenic	50.0%
	CGGACCAAATCATCCATCTG+AGG	-	chr8_1:56864170-56864189	None:intergenic	50.0%
!	GCTAGCTTCACCTGAAGCTG+TGG	-	chr8_1:56861988-56862007	None:intergenic	55.0%
	TTCTGCGAGTCTCCAACCTC+AGG	+	chr8_1:56863105-56863124	Msa1203080:CDS	55.0%
	ACGGGGATCTGTACATCCCA+TGG	-	chr8_1:56863158-56863177	None:intergenic	55.0%
	ACAAACGCCTCTCTGCTTCG+CGG	+	chr8_1:56863361-56863380	Msa1203080:CDS	55.0%
	GATAGCCTGCATTGGGGTCT+CGG	+	chr8_1:56863430-56863449	Msa1203080:CDS	55.0%
	TTTGTCCGAGACCCCAATGC+AGG	-	chr8_1:56863438-56863457	None:intergenic	55.0%
	GCATTGGGGTCTCGGACAAA+TGG	+	chr8_1:56863438-56863457	Msa1203080:CDS	55.0%
	ACATCAATTGGCGGAGGCAG+TGG	+	chr8_1:56863649-56863668	Msa1203080:CDS	55.0%
	AATTGGCGGAGGCAGTGGTT+TGG	+	chr8_1:56863654-56863673	Msa1203080:CDS	55.0%
!	GGCTGTGCTACTACCAGCAC+TGG	+	chr8_1:56863043-56863062	Msa1203080:CDS	60.0%
	GCTCGCAAACACACCAGTGC+TGG	-	chr8_1:56863059-56863078	None:intergenic	60.0%
	GAGTCTCCAACCTCAGGCAC+CGG	+	chr8_1:56863111-56863130	Msa1203080:CDS	60.0%
	AGAGAGATCGCCTCGGACGA+TGG	-	chr8_1:56863202-56863221	None:intergenic	60.0%
	ATTGCGGGCGGCTGATGTGT+TGG	-	chr8_1:56863292-56863311	None:intergenic	60.0%
	GCAGTAGCAGACATTGCGGG+CGG	-	chr8_1:56863304-56863323	None:intergenic	60.0%
	CAAACGCCTCTCTGCTTCGC+GGG	+	chr8_1:56863362-56863381	Msa1203080:CDS	60.0%
	CAGCAGCCATCCCCAATCCT+AGG	-	chr8_1:56863594-56863613	None:intergenic	60.0%
	CTAGGATTGGGGATGGCTGC+TGG	+	chr8_1:56863592-56863611	Msa1203080:CDS	60.0%
	AAGTGCAGACAGGCCTCCAC+CGG	-	chr8_1:56863626-56863645	None:intergenic	60.0%
	GCAGCCGCATCCTTCGGTAA+TGG	+	chr8_1:56863688-56863707	Msa1203080:CDS	60.0%
	TGAACGCCGGTGCCTGAGGT+TGG	-	chr8_1:56863120-56863139	None:intergenic	65.0%
	TCACTGAACGCCGGTGCCTG+AGG	-	chr8_1:56863124-56863143	None:intergenic	65.0%
	CTCAGCTCCTCCATCGTCCG+AGG	+	chr8_1:56863189-56863208	Msa1203080:CDS	65.0%
	GAGATCGCCTCGGACGATGG+AGG	-	chr8_1:56863199-56863218	None:intergenic	65.0%
	TCCAAGCCCGCGAAGCAGAG+AGG	-	chr8_1:56863371-56863390	None:intergenic	65.0%
	GGATTGGGGATGGCTGCTGG+TGG	+	chr8_1:56863595-56863614	Msa1203080:CDS	65.0%
	ATGGCTGCTGGTGGCAGTGC+CGG	+	chr8_1:56863604-56863623	Msa1203080:CDS	65.0%
	ACCGCAGCAGCCGCATCCTT+CGG	+	chr8_1:56863682-56863701	Msa1203080:CDS	65.0%
	ACCGAAGGATGCGGCTGCTG+CGG	-	chr8_1:56863686-56863705	None:intergenic	65.0%
	GCCTCTCTGCTTCGCGGGCT+TGG	+	chr8_1:56863367-56863386	Msa1203080:CDS	70.0%
!	GCTGCTGGTGGCAGTGCCGG+TGG	+	chr8_1:56863607-56863626	Msa1203080:CDS	75.0%
!!	GCTGGTGGCAGTGCCGGTGG+AGG	+	chr8_1:56863610-56863629	Msa1203080:CDS	75.0%

Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	56861749	56864472	56861749	ID=Msa1203080;Name=Msa1203080
chr8_1	mRNA	56861749	56864472	56861749	ID=Msa1203080-mRNA-1;Parent=Msa1203080;Name=Msa1203080-mRNA-1;_AED=0.01;_eAED=0.01;_QI=214\|0.5\|0.66\|1\|1\|1\|3\|725\|357
chr8_1	exon	56861749	56862089	56861749	ID=Msa1203080-mRNA-1:exon:18552;Parent=Msa1203080-mRNA-1
chr8_1	exon	56862176	56862307	56862176	ID=Msa1203080-mRNA-1:exon:18553;Parent=Msa1203080-mRNA-1
chr8_1	exon	56862933	56864472	56862933	ID=Msa1203080-mRNA-1:exon:18554;Parent=Msa1203080-mRNA-1
chr8_1	five_prime_UTR	56861749	56861962	56861749	ID=Msa1203080-mRNA-1:five_prime_utr;Parent=Msa1203080-mRNA-1
chr8_1	CDS	56861963	56862089	56861963	ID=Msa1203080-mRNA-1:cds;Parent=Msa1203080-mRNA-1
chr8_1	CDS	56862176	56862307	56862176	ID=Msa1203080-mRNA-1:cds;Parent=Msa1203080-mRNA-1
chr8_1	CDS	56862933	56863747	56862933	ID=Msa1203080-mRNA-1:cds;Parent=Msa1203080-mRNA-1
chr8_1	three_prime_UTR	56863748	56864472	56863748	ID=Msa1203080-mRNA-1:three_prime_utr;Parent=Msa1203080-mRNA-1

Gene Sequence

>Msa1203080

ATGGTTGATTTAGACAATGTTTCCACAGCTTCAGGTGAAGCTAGCATCTCTTCCTCTGGTAATAACAATATTCAATCACCAATTCCAAAACCCACCAAGAAAAAAAGAAATCTCCCAGGAATGCCAGATCCAGAAGCAGAGGTGATTGCTCTGTCACCAACAACGTTGTTAGCTACAAACAGATTTGTGTGTGAAATATGTAACAAAGGTTTTCAAAGAGATCAGAATCTTCAACTACATAGAAGAGGACATAATCTAGATTTGCCAGAAAATCCACCCCAAATCATAGAGGAACCACAAGTTGTTGTTACTACTACTGCTAGTGCTTTAAATGCAAGTTGTAGCAGCAGTACTAGCTCAACAAGCAACGGCTGTGCTACTACCAGCACTGGTGTGTTTGCGAGCTTGTTTGCTTCATCAACAGCTTCAGCTTCTGCGAGTCTCCAACCTCAGGCACCGGCGTTCAGTGACCTAATTAGGTCCATGGGATGTACAGATCCCCGTCCTACAAATTTCTCAGCTCCTCCATCGTCCGAGGCGATCTCTCTTTGCCTTTCGACCAATCATGGATCATCAATTTTCGGAACAGGAGGGCAGGAGTGTCGCCAATACGTGCCAACACATCAGCCGCCCGCAATGTCTGCTACTGCATTACTTCAAAAAGCAGCTCAAATGGGCGCTGCTGCAACAAACGCCTCTCTGCTTCGCGGGCTTGGAATTGTGTCGTCTTCTGCTTCCACTTCATCTGGCCAACAAGATAGCCTGCATTGGGGTCTCGGACAAATGGAACCAGAGGGTTCTAGTTTAGTTTCAGCAGGACTTGGACTAGGTCTTCCTTGTGACGGTGATTCTGGACTAAAGGAATTGATGTTGGGGACTCCGTCAATGTTTGGTCCTAAGCAGACAACGCTTGATTTCCTAGGATTGGGGATGGCTGCTGGTGGCAGTGCCGGTGGAGGCCTGTCTGCACTTATCACATCAATTGGCGGAGGCAGTGGTTTGGATGTTACCGCAGCAGCCGCATCCTTCGGTAATGGAGAGTTCTCTGGCAAAGATATTGGAAGAAGTTCATGA

Protein sequence

>Msa1203080

MVDLDNVSTASGEASISSSGNNNIQSPIPKPTKKKRNLPGMPDPEAEVIALSPTTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLDLPENPPQIIEEPQVVVTTTASALNASCSSSTSSTSNGCATTSTGVFASLFASSTASASASLQPQAPAFSDLIRSMGCTDPRPTNFSAPPSSEAISLCLSTNHGSSIFGTGGQECRQYVPTHQPPAMSATALLQKAAQMGAAATNASLLRGLGIVSSSASTSSGQQDSLHWGLGQMEPEGSSLVSAGLGLGLPCDGDSGLKELMLGTPSMFGPKQTTLDFLGLGMAAGGSAGGGLSALITSIGGGSGLDVTAAAASFGNGEFSGKDIGRSS*