AlfalfaGEDB | Msa1204230

M. sativa cultivar zhongmu-4 / Msa1204230

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141
PFAM: PF18345.4

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1204230	XP_003609277.1	65.986	147	20	1	1	117	118	264	7.76e-57	187

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1204230	sp\|Q9LT81\|C3H39_ARATH	29.508	183	62	4	1	117	186	367	8.94e-17	77.4

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa1204230	TF	C3H

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1204230	MtrunA17_Chr4g0063371	82.051	117	14	1	1	117	116	225	1.52e-56	175
Msa1204230	MtrunA17_Chr4g0063391	52.688	93	14	1	1	63	118	210	7.39e-26	96.7
Msa1204230	MtrunA17_Chr4g0063401	41.748	103	18	2	1	62	147	248	1.17e-16	72.8

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1204230	AT3G19360.1	29.508	183	62	4	1	117	186	367	9.09e-18	77.4
Msa1204230	AT3G19360.2	29.508	183	62	4	1	117	186	367	9.09e-18	77.4

Showing 1 to 2 of 2 entries

Previous1Next

Find 36 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTGACAGTTCTTTCCAA+AGG	0.613225	8_1:-59743130	None:intergenic
AAATCAGAGTTACAAGTTCC+TGG	0.400098	8_1:+59743929	Msa1204230:intron
AAGAACTGTCACTTTGCTCA+TGG	0.585017	8_1:+59743138	Msa1204230:CDS
AAGTTGACTTGCAGGGGAGG+TGG	0.548779	8_1:-59744005	None:intergenic
AATTGCAGCTTCAGCTTCAA+TGG	0.390999	8_1:-59743957	None:intergenic
AATTTACACTTATCTGCATA+GGG	0.538027	8_1:-59743024	None:intergenic
AGACTAAGCTGTGTCTCAAG+TGG	0.589149	8_1:+59743088	Msa1204230:CDS
AGTCAGATCAATCGTATTTA+CGG	0.310380	8_1:+59744082	Msa1204230:CDS
ATGAAGATCCTGCACAATTT+AGG	0.163729	8_1:+59743052	Msa1204230:CDS
ATTGTGCAGGATCTTCATGA+AGG	0.599081	8_1:-59743047	None:intergenic

Showing 1 to 10 of 36 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GAATTTACACTTATCTGCAT+AGG	-	chr8_1:59743028-59743047	None:intergenic	30.0%
TGATTCCATCCTTATTCTAA+TGG	+	chr8_1:59743407-59743426	Msa1204230:intron	30.0%
ATCATCCATTAGAATAAGGA+TGG	-	chr8_1:59743415-59743434	None:intergenic	30.0%
GATGAACATAATACAATAGC+TGG	-	chr8_1:59743536-59743555	None:intergenic	30.0%
CCTCAAAATTATTGATGAGT+CGG	-	chr8_1:59743617-59743636	None:intergenic	30.0%
AAGAGTCAGAACAATATACA+TGG	-	chr8_1:59743890-59743909	None:intergenic	30.0%
CTAAGAAGAAACGTATACTT+GGG	+	chr8_1:59744050-59744069	Msa1204230:CDS	30.0%
GAATTTACACTTATCTGCAT+AGG	-	chr8_1:59743028-59743047	None:intergenic	30.0%
TGATTCCATCCTTATTCTAA+TGG	+	chr8_1:59743407-59743426	Msa1204230:intron	30.0%
ATCATCCATTAGAATAAGGA+TGG	-	chr8_1:59743415-59743434	None:intergenic	30.0%

Showing 1 to 10 of 136 entries

Previous1 2 3 4 5…14Next

Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	59742985	59744102	59742985	ID=Msa1204230;Name=Msa1204230
chr8_1	mRNA	59742985	59744102	59742985	ID=Msa1204230-mRNA-1;Parent=Msa1204230;Name=Msa1204230-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0\|0\|0\|1\|1\|0\|2\|0\|117
chr8_1	exon	59742985	59743168	59742985	ID=Msa1204230-mRNA-1:exon:19301;Parent=Msa1204230-mRNA-1
chr8_1	exon	59743936	59744102	59743936	ID=Msa1204230-mRNA-1:exon:19302;Parent=Msa1204230-mRNA-1
chr8_1	CDS	59742985	59743168	59742985	ID=Msa1204230-mRNA-1:cds;Parent=Msa1204230-mRNA-1
chr8_1	CDS	59743936	59744102	59743936	ID=Msa1204230-mRNA-1:cds;Parent=Msa1204230-mRNA-1

Gene Sequence	>Msa1204230 ATGAAACTGTCCAAGAAGTATAGCAATGGGGAGGAATGTCCCTATGCAGATAAGTGTAAATTCCTTCATGAAGATCCTGCACAATTTAGGGGCACTTATCGGAAGACTAAGCTGTGTCTCAAGTGGAAGGATACAGGATATTGTTCCTTTGGAAAGAACTGTCACTTTGCTCATGGTGAAGAAGAGTTACAAGTTCCTGGTGGAGCCATTGAAGCTGAAGCTGCAATTACCATAGAAAATTCAACAAACCCTACCACCTCCCCTGCAAGTCAACTTGTGGAAAAGGAAGAAGAGCAGCCTAAGAAGAAACGTATACTTGGGTTGAAATTCAGTCAGATCAATCGTATTTAC
Protein sequence	>Msa1204230 MKLSKKYSNGEECPYADKCKFLHEDPAQFRGTYRKTKLCLKWKDTGYCSFGKNCHFAHGEEELQVPGGAIEAEAAITIENSTNPTTSPASQLVEKEEEQPKKKRILGLKFSQINRIY