Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1204230 | XP_003609277.1 | 65.986 | 147 | 20 | 1 | 1 | 117 | 118 | 264 | 7.76e-57 | 187 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1204230 | sp|Q9LT81|C3H39_ARATH | 29.508 | 183 | 62 | 4 | 1 | 117 | 186 | 367 | 8.94e-17 | 77.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa1204230 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1204230 | MtrunA17_Chr4g0063371 | 82.051 | 117 | 14 | 1 | 1 | 117 | 116 | 225 | 1.52e-56 | 175 |
| Msa1204230 | MtrunA17_Chr4g0063391 | 52.688 | 93 | 14 | 1 | 1 | 63 | 118 | 210 | 7.39e-26 | 96.7 |
| Msa1204230 | MtrunA17_Chr4g0063401 | 41.748 | 103 | 18 | 2 | 1 | 62 | 147 | 248 | 1.17e-16 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1204230 | AT3G19360.1 | 29.508 | 183 | 62 | 4 | 1 | 117 | 186 | 367 | 9.09e-18 | 77.4 |
| Msa1204230 | AT3G19360.2 | 29.508 | 183 | 62 | 4 | 1 | 117 | 186 | 367 | 9.09e-18 | 77.4 |
Find 36 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGAAGATCCTGCACAATTT+AGG | 0.163729 | 8_1:+59743052 | Msa1204230:CDS |
| CTCCCCATTGCTATACTTCT+TGG | 0.165677 | 8_1:-59742995 | None:intergenic |
| CCAAGTATACGTTTCTTCTT+AGG | 0.214369 | 8_1:-59744049 | None:intergenic |
| TGAAGATCCTGCACAATTTA+GGG | 0.278155 | 8_1:+59743053 | Msa1204230:CDS |
| AGTCAGATCAATCGTATTTA+CGG | 0.310380 | 8_1:+59744082 | Msa1204230:CDS |
| GATACAGGATATTGTTCCTT+TGG | 0.336419 | 8_1:+59743114 | Msa1204230:CDS |
| CACAATTTAGGGGCACTTAT+CGG | 0.370314 | 8_1:+59743064 | Msa1204230:CDS |
| AATTGCAGCTTCAGCTTCAA+TGG | 0.390999 | 8_1:-59743957 | None:intergenic |
| AAATCAGAGTTACAAGTTCC+TGG | 0.400098 | 8_1:+59743929 | Msa1204230:intron |
| GACTTGCAGGGGAGGTGGTA+GGG | 0.419543 | 8_1:-59744000 | None:intergenic |
| TGCAAGTCAACTTGTGGAAA+AGG | 0.437938 | 8_1:+59744015 | Msa1204230:CDS |
| CCTAAGAAGAAACGTATACT+TGG | 0.441257 | 8_1:+59744049 | Msa1204230:CDS |
| TGTCCAAGAAGTATAGCAAT+GGG | 0.457675 | 8_1:+59742992 | Msa1204230:CDS |
| CACTTTGCTCATGGTGAAGA+AGG | 0.463092 | 8_1:+59743147 | Msa1204230:CDS |
| TGTCTCAAGTGGAAGGATAC+AGG | 0.464303 | 8_1:+59743099 | Msa1204230:CDS |
| TGACTTGCAGGGGAGGTGGT+AGG | 0.490726 | 8_1:-59744001 | None:intergenic |
| CACAAGTTGACTTGCAGGGG+AGG | 0.509364 | 8_1:-59744008 | None:intergenic |
| AATTTACACTTATCTGCATA+GGG | 0.538027 | 8_1:-59743024 | None:intergenic |
| CTCCCCTGCAAGTCAACTTG+TGG | 0.543090 | 8_1:+59744009 | Msa1204230:CDS |
| AAGTTGACTTGCAGGGGAGG+TGG | 0.548779 | 8_1:-59744005 | None:intergenic |
| CTGTCCAAGAAGTATAGCAA+TGG | 0.557285 | 8_1:+59742991 | Msa1204230:CDS |
| GAATTTACACTTATCTGCAT+AGG | 0.559420 | 8_1:-59743025 | None:intergenic |
| TTTCCACAAGTTGACTTGCA+GGG | 0.560920 | 8_1:-59744012 | None:intergenic |
| TAAGTGCCCCTAAATTGTGC+AGG | 0.568865 | 8_1:-59743060 | None:intergenic |
| TCAGCTTCAATGGCTCCACC+AGG | 0.575223 | 8_1:-59743947 | None:intergenic |
| CTAAGAAGAAACGTATACTT+GGG | 0.583825 | 8_1:+59744050 | Msa1204230:CDS |
| AAGAACTGTCACTTTGCTCA+TGG | 0.585017 | 8_1:+59743138 | Msa1204230:CDS |
| TTCCACAAGTTGACTTGCAG+GGG | 0.588906 | 8_1:-59744011 | None:intergenic |
| AGACTAAGCTGTGTCTCAAG+TGG | 0.589149 | 8_1:+59743088 | Msa1204230:CDS |
| ATTGTGCAGGATCTTCATGA+AGG | 0.599081 | 8_1:-59743047 | None:intergenic |
| TAAGCTGTGTCTCAAGTGGA+AGG | 0.609632 | 8_1:+59743092 | Msa1204230:CDS |
| AAAGTGACAGTTCTTTCCAA+AGG | 0.613225 | 8_1:-59743130 | None:intergenic |
| GAAGATCCTGCACAATTTAG+GGG | 0.650410 | 8_1:+59743054 | Msa1204230:CDS |
| CAAGAAGTATAGCAATGGGG+AGG | 0.682965 | 8_1:+59742996 | Msa1204230:CDS |
| TCAGAGTTACAAGTTCCTGG+TGG | 0.718686 | 8_1:+59743932 | Msa1204230:intron |
| GTCCAAGAAGTATAGCAATG+GGG | 0.754417 | 8_1:+59742993 | Msa1204230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAAAAGTTTTACATT+TGG | + | chr8_1:59743460-59743479 | Msa1204230:intron | 10.0% |
| !!! | GACAAATTTTTTTAAATATA+AGG | - | chr8_1:59743781-59743800 | None:intergenic | 10.0% |
| !!! | AAAAAAAAAAGTTTTACATT+TGG | + | chr8_1:59743460-59743479 | Msa1204230:intron | 10.0% |
| !!! | GACAAATTTTTTTAAATATA+AGG | - | chr8_1:59743781-59743800 | None:intergenic | 10.0% |
| !!! | TTTTTTTAAATATAAGGTCT+AGG | - | chr8_1:59743775-59743794 | None:intergenic | 15.0% |
| !!! | TTTTTTTAAATATAAGGTCT+AGG | - | chr8_1:59743775-59743794 | None:intergenic | 15.0% |
| !!! | CAATAACTCATTTTGATTAT+TGG | + | chr8_1:59743173-59743192 | Msa1204230:intron | 20.0% |
| !!! | AAGATACTATAATTTCTAGT+AGG | + | chr8_1:59743484-59743503 | Msa1204230:intron | 20.0% |
| !!! | TTATAACAATTGCAACTTTT+TGG | + | chr8_1:59743861-59743880 | Msa1204230:intron | 20.0% |
| !!! | CAATAACTCATTTTGATTAT+TGG | + | chr8_1:59743173-59743192 | Msa1204230:intron | 20.0% |
| !!! | AAGATACTATAATTTCTAGT+AGG | + | chr8_1:59743484-59743503 | Msa1204230:intron | 20.0% |
| !!! | TTATAACAATTGCAACTTTT+TGG | + | chr8_1:59743861-59743880 | Msa1204230:intron | 20.0% |
| ! | AATTTACACTTATCTGCATA+GGG | - | chr8_1:59743027-59743046 | None:intergenic | 25.0% |
| !!! | CTCATTTTGATTATTGGTTT+TGG | + | chr8_1:59743179-59743198 | Msa1204230:intron | 25.0% |
| ! | AGTAATCATCCATTAGAATA+AGG | - | chr8_1:59743419-59743438 | None:intergenic | 25.0% |
| ! | AATGGATGATTACTATTGTA+TGG | + | chr8_1:59743425-59743444 | Msa1204230:intron | 25.0% |
| !!! | TACTATAATTTCTAGTAGGT+TGG | + | chr8_1:59743488-59743507 | Msa1204230:intron | 25.0% |
| !! | ACTTTAAGAAGAAACAAGTT+TGG | - | chr8_1:59743563-59743582 | None:intergenic | 25.0% |
| !! | TTAAAGTTTCTGCTGATTAT+TGG | + | chr8_1:59743576-59743595 | Msa1204230:intron | 25.0% |
| ! | AATTTACACTTATCTGCATA+GGG | - | chr8_1:59743027-59743046 | None:intergenic | 25.0% |
| !!! | CTCATTTTGATTATTGGTTT+TGG | + | chr8_1:59743179-59743198 | Msa1204230:intron | 25.0% |
| ! | AGTAATCATCCATTAGAATA+AGG | - | chr8_1:59743419-59743438 | None:intergenic | 25.0% |
| ! | AATGGATGATTACTATTGTA+TGG | + | chr8_1:59743425-59743444 | Msa1204230:intron | 25.0% |
| !!! | TACTATAATTTCTAGTAGGT+TGG | + | chr8_1:59743488-59743507 | Msa1204230:intron | 25.0% |
| !! | ACTTTAAGAAGAAACAAGTT+TGG | - | chr8_1:59743563-59743582 | None:intergenic | 25.0% |
| !! | TTAAAGTTTCTGCTGATTAT+TGG | + | chr8_1:59743576-59743595 | Msa1204230:intron | 25.0% |
| GAATTTACACTTATCTGCAT+AGG | - | chr8_1:59743028-59743047 | None:intergenic | 30.0% | |
| !!! | TTTGAATGTGTGTCATTTTG+TGG | + | chr8_1:59743327-59743346 | Msa1204230:intron | 30.0% |
| TGATTCCATCCTTATTCTAA+TGG | + | chr8_1:59743407-59743426 | Msa1204230:intron | 30.0% | |
| ATCATCCATTAGAATAAGGA+TGG | - | chr8_1:59743415-59743434 | None:intergenic | 30.0% | |
| GATGAACATAATACAATAGC+TGG | - | chr8_1:59743536-59743555 | None:intergenic | 30.0% | |
| CCTCAAAATTATTGATGAGT+CGG | - | chr8_1:59743617-59743636 | None:intergenic | 30.0% | |
| AAGAGTCAGAACAATATACA+TGG | - | chr8_1:59743890-59743909 | None:intergenic | 30.0% | |
| !!! | AGGGTTTGTTGAATTTTCTA+TGG | - | chr8_1:59743984-59744003 | None:intergenic | 30.0% |
| CTAAGAAGAAACGTATACTT+GGG | + | chr8_1:59744050-59744069 | Msa1204230:CDS | 30.0% | |
| GAATTTACACTTATCTGCAT+AGG | - | chr8_1:59743028-59743047 | None:intergenic | 30.0% | |
| !!! | TTTGAATGTGTGTCATTTTG+TGG | + | chr8_1:59743327-59743346 | Msa1204230:intron | 30.0% |
| TGATTCCATCCTTATTCTAA+TGG | + | chr8_1:59743407-59743426 | Msa1204230:intron | 30.0% | |
| ATCATCCATTAGAATAAGGA+TGG | - | chr8_1:59743415-59743434 | None:intergenic | 30.0% | |
| GATGAACATAATACAATAGC+TGG | - | chr8_1:59743536-59743555 | None:intergenic | 30.0% | |
| CCTCAAAATTATTGATGAGT+CGG | - | chr8_1:59743617-59743636 | None:intergenic | 30.0% | |
| AAGAGTCAGAACAATATACA+TGG | - | chr8_1:59743890-59743909 | None:intergenic | 30.0% | |
| !!! | AGGGTTTGTTGAATTTTCTA+TGG | - | chr8_1:59743984-59744003 | None:intergenic | 30.0% |
| CTAAGAAGAAACGTATACTT+GGG | + | chr8_1:59744050-59744069 | Msa1204230:CDS | 30.0% | |
| ! | TGTCCAAGAAGTATAGCAAT+GGG | + | chr8_1:59742992-59743011 | Msa1204230:CDS | 35.0% |
| ATGAAGATCCTGCACAATTT+AGG | + | chr8_1:59743052-59743071 | Msa1204230:CDS | 35.0% | |
| TGAAGATCCTGCACAATTTA+GGG | + | chr8_1:59743053-59743072 | Msa1204230:CDS | 35.0% | |
| GATACAGGATATTGTTCCTT+TGG | + | chr8_1:59743114-59743133 | Msa1204230:CDS | 35.0% | |
| AAAGTGACAGTTCTTTCCAA+AGG | - | chr8_1:59743133-59743152 | None:intergenic | 35.0% | |
| !! | TTGACAAAGCAAGTTCTGAA+TGG | + | chr8_1:59743380-59743399 | Msa1204230:intron | 35.0% |
| ! | CCGACTCATCAATAATTTTG+AGG | + | chr8_1:59743614-59743633 | Msa1204230:intron | 35.0% |
| TGTCTTCATCATCACAAATG+CGG | - | chr8_1:59743718-59743737 | None:intergenic | 35.0% | |
| ATCATACACTTGCACACAAA+TGG | - | chr8_1:59743803-59743822 | None:intergenic | 35.0% | |
| TGTTCTGACTCTTGAAGTAT+TGG | + | chr8_1:59743897-59743916 | Msa1204230:intron | 35.0% | |
| AAATCAGAGTTACAAGTTCC+TGG | + | chr8_1:59743929-59743948 | Msa1204230:intron | 35.0% | |
| CCAAGTATACGTTTCTTCTT+AGG | - | chr8_1:59744052-59744071 | None:intergenic | 35.0% | |
| CCTAAGAAGAAACGTATACT+TGG | + | chr8_1:59744049-59744068 | Msa1204230:CDS | 35.0% | |
| ! | TGTCCAAGAAGTATAGCAAT+GGG | + | chr8_1:59742992-59743011 | Msa1204230:CDS | 35.0% |
| ATGAAGATCCTGCACAATTT+AGG | + | chr8_1:59743052-59743071 | Msa1204230:CDS | 35.0% | |
| TGAAGATCCTGCACAATTTA+GGG | + | chr8_1:59743053-59743072 | Msa1204230:CDS | 35.0% | |
| GATACAGGATATTGTTCCTT+TGG | + | chr8_1:59743114-59743133 | Msa1204230:CDS | 35.0% | |
| AAAGTGACAGTTCTTTCCAA+AGG | - | chr8_1:59743133-59743152 | None:intergenic | 35.0% | |
| !! | TTGACAAAGCAAGTTCTGAA+TGG | + | chr8_1:59743380-59743399 | Msa1204230:intron | 35.0% |
| ! | CCGACTCATCAATAATTTTG+AGG | + | chr8_1:59743614-59743633 | Msa1204230:intron | 35.0% |
| TGTCTTCATCATCACAAATG+CGG | - | chr8_1:59743718-59743737 | None:intergenic | 35.0% | |
| ATCATACACTTGCACACAAA+TGG | - | chr8_1:59743803-59743822 | None:intergenic | 35.0% | |
| TGTTCTGACTCTTGAAGTAT+TGG | + | chr8_1:59743897-59743916 | Msa1204230:intron | 35.0% | |
| AAATCAGAGTTACAAGTTCC+TGG | + | chr8_1:59743929-59743948 | Msa1204230:intron | 35.0% | |
| CCAAGTATACGTTTCTTCTT+AGG | - | chr8_1:59744052-59744071 | None:intergenic | 35.0% | |
| CCTAAGAAGAAACGTATACT+TGG | + | chr8_1:59744049-59744068 | Msa1204230:CDS | 35.0% | |
| ! | CTGTCCAAGAAGTATAGCAA+TGG | + | chr8_1:59742991-59743010 | Msa1204230:CDS | 40.0% |
| ! | GTCCAAGAAGTATAGCAATG+GGG | + | chr8_1:59742993-59743012 | Msa1204230:CDS | 40.0% |
| ATTGTGCAGGATCTTCATGA+AGG | - | chr8_1:59743050-59743069 | None:intergenic | 40.0% | |
| GAAGATCCTGCACAATTTAG+GGG | + | chr8_1:59743054-59743073 | Msa1204230:CDS | 40.0% | |
| !! | CACAATTTAGGGGCACTTAT+CGG | + | chr8_1:59743064-59743083 | Msa1204230:CDS | 40.0% |
| !! | AAGAACTGTCACTTTGCTCA+TGG | + | chr8_1:59743138-59743157 | Msa1204230:CDS | 40.0% |
| CTTATTTGACCGCGGTATTA+AGG | - | chr8_1:59743685-59743704 | None:intergenic | 40.0% | |
| CTTAATACCGCGGTCAAATA+AGG | + | chr8_1:59743683-59743702 | Msa1204230:intron | 40.0% | |
| ! | GCATTAACCTTATTTGACCG+CGG | - | chr8_1:59743693-59743712 | None:intergenic | 40.0% |
| AATTGCAGCTTCAGCTTCAA+TGG | - | chr8_1:59743960-59743979 | None:intergenic | 40.0% | |
| !! | TTTCCACAAGTTGACTTGCA+GGG | - | chr8_1:59744015-59744034 | None:intergenic | 40.0% |
| !!! | TTTTCCACAAGTTGACTTGC+AGG | - | chr8_1:59744016-59744035 | None:intergenic | 40.0% |
| TGCAAGTCAACTTGTGGAAA+AGG | + | chr8_1:59744015-59744034 | Msa1204230:CDS | 40.0% | |
| ! | CTGTCCAAGAAGTATAGCAA+TGG | + | chr8_1:59742991-59743010 | Msa1204230:CDS | 40.0% |
| ! | GTCCAAGAAGTATAGCAATG+GGG | + | chr8_1:59742993-59743012 | Msa1204230:CDS | 40.0% |
| ATTGTGCAGGATCTTCATGA+AGG | - | chr8_1:59743050-59743069 | None:intergenic | 40.0% | |
| GAAGATCCTGCACAATTTAG+GGG | + | chr8_1:59743054-59743073 | Msa1204230:CDS | 40.0% | |
| !! | CACAATTTAGGGGCACTTAT+CGG | + | chr8_1:59743064-59743083 | Msa1204230:CDS | 40.0% |
| !! | AAGAACTGTCACTTTGCTCA+TGG | + | chr8_1:59743138-59743157 | Msa1204230:CDS | 40.0% |
| CTTATTTGACCGCGGTATTA+AGG | - | chr8_1:59743685-59743704 | None:intergenic | 40.0% | |
| CTTAATACCGCGGTCAAATA+AGG | + | chr8_1:59743683-59743702 | Msa1204230:intron | 40.0% | |
| ! | GCATTAACCTTATTTGACCG+CGG | - | chr8_1:59743693-59743712 | None:intergenic | 40.0% |
| AATTGCAGCTTCAGCTTCAA+TGG | - | chr8_1:59743960-59743979 | None:intergenic | 40.0% | |
| !! | TTTCCACAAGTTGACTTGCA+GGG | - | chr8_1:59744015-59744034 | None:intergenic | 40.0% |
| !!! | TTTTCCACAAGTTGACTTGC+AGG | - | chr8_1:59744016-59744035 | None:intergenic | 40.0% |
| TGCAAGTCAACTTGTGGAAA+AGG | + | chr8_1:59744015-59744034 | Msa1204230:CDS | 40.0% | |
| CTCCCCATTGCTATACTTCT+TGG | - | chr8_1:59742998-59743017 | None:intergenic | 45.0% | |
| ! | CAAGAAGTATAGCAATGGGG+AGG | + | chr8_1:59742996-59743015 | Msa1204230:CDS | 45.0% |
| TAAGTGCCCCTAAATTGTGC+AGG | - | chr8_1:59743063-59743082 | None:intergenic | 45.0% | |
| AGACTAAGCTGTGTCTCAAG+TGG | + | chr8_1:59743088-59743107 | Msa1204230:CDS | 45.0% | |
| TAAGCTGTGTCTCAAGTGGA+AGG | + | chr8_1:59743092-59743111 | Msa1204230:CDS | 45.0% | |
| TGTCTCAAGTGGAAGGATAC+AGG | + | chr8_1:59743099-59743118 | Msa1204230:CDS | 45.0% | |
| CACTTTGCTCATGGTGAAGA+AGG | + | chr8_1:59743147-59743166 | Msa1204230:CDS | 45.0% | |
| TCAGAGTTACAAGTTCCTGG+TGG | + | chr8_1:59743932-59743951 | Msa1204230:intron | 45.0% | |
| !! | TTCCACAAGTTGACTTGCAG+GGG | - | chr8_1:59744014-59744033 | None:intergenic | 45.0% |
| CTCCCCATTGCTATACTTCT+TGG | - | chr8_1:59742998-59743017 | None:intergenic | 45.0% | |
| ! | CAAGAAGTATAGCAATGGGG+AGG | + | chr8_1:59742996-59743015 | Msa1204230:CDS | 45.0% |
| TAAGTGCCCCTAAATTGTGC+AGG | - | chr8_1:59743063-59743082 | None:intergenic | 45.0% | |
| AGACTAAGCTGTGTCTCAAG+TGG | + | chr8_1:59743088-59743107 | Msa1204230:CDS | 45.0% | |
| TAAGCTGTGTCTCAAGTGGA+AGG | + | chr8_1:59743092-59743111 | Msa1204230:CDS | 45.0% | |
| TGTCTCAAGTGGAAGGATAC+AGG | + | chr8_1:59743099-59743118 | Msa1204230:CDS | 45.0% | |
| CACTTTGCTCATGGTGAAGA+AGG | + | chr8_1:59743147-59743166 | Msa1204230:CDS | 45.0% | |
| TCAGAGTTACAAGTTCCTGG+TGG | + | chr8_1:59743932-59743951 | Msa1204230:intron | 45.0% | |
| !! | TTCCACAAGTTGACTTGCAG+GGG | - | chr8_1:59744014-59744033 | None:intergenic | 45.0% |
| CGGTATTAAGGATCGTGGCA+TGG | - | chr8_1:59743673-59743692 | None:intergenic | 50.0% | |
| TGCCACGATCCTTAATACCG+CGG | + | chr8_1:59743673-59743692 | Msa1204230:intron | 50.0% | |
| CGGTATTAAGGATCGTGGCA+TGG | - | chr8_1:59743673-59743692 | None:intergenic | 50.0% | |
| TGCCACGATCCTTAATACCG+CGG | + | chr8_1:59743673-59743692 | Msa1204230:intron | 50.0% | |
| GACCGCGGTATTAAGGATCG+TGG | - | chr8_1:59743678-59743697 | None:intergenic | 55.0% | |
| ! | AAGGTCTAGGACCACGACTG+TGG | - | chr8_1:59743762-59743781 | None:intergenic | 55.0% |
| TCAGCTTCAATGGCTCCACC+AGG | - | chr8_1:59743950-59743969 | None:intergenic | 55.0% | |
| !! | AAGTTGACTTGCAGGGGAGG+TGG | - | chr8_1:59744008-59744027 | None:intergenic | 55.0% |
| !! | CACAAGTTGACTTGCAGGGG+AGG | - | chr8_1:59744011-59744030 | None:intergenic | 55.0% |
| CTCCCCTGCAAGTCAACTTG+TGG | + | chr8_1:59744009-59744028 | Msa1204230:CDS | 55.0% | |
| GACCGCGGTATTAAGGATCG+TGG | - | chr8_1:59743678-59743697 | None:intergenic | 55.0% | |
| ! | AAGGTCTAGGACCACGACTG+TGG | - | chr8_1:59743762-59743781 | None:intergenic | 55.0% |
| TCAGCTTCAATGGCTCCACC+AGG | - | chr8_1:59743950-59743969 | None:intergenic | 55.0% | |
| !! | AAGTTGACTTGCAGGGGAGG+TGG | - | chr8_1:59744008-59744027 | None:intergenic | 55.0% |
| !! | CACAAGTTGACTTGCAGGGG+AGG | - | chr8_1:59744011-59744030 | None:intergenic | 55.0% |
| CTCCCCTGCAAGTCAACTTG+TGG | + | chr8_1:59744009-59744028 | Msa1204230:CDS | 55.0% | |
| GTACGTCTCAGCCACAGTCG+TGG | + | chr8_1:59743748-59743767 | Msa1204230:intron | 60.0% | |
| GACTTGCAGGGGAGGTGGTA+GGG | - | chr8_1:59744003-59744022 | None:intergenic | 60.0% | |
| ! | TGACTTGCAGGGGAGGTGGT+AGG | - | chr8_1:59744004-59744023 | None:intergenic | 60.0% |
| GTACGTCTCAGCCACAGTCG+TGG | + | chr8_1:59743748-59743767 | Msa1204230:intron | 60.0% | |
| GACTTGCAGGGGAGGTGGTA+GGG | - | chr8_1:59744003-59744022 | None:intergenic | 60.0% | |
| ! | TGACTTGCAGGGGAGGTGGT+AGG | - | chr8_1:59744004-59744023 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 59742985 | 59744102 | 59742985 | ID=Msa1204230;Name=Msa1204230 |
| chr8_1 | mRNA | 59742985 | 59744102 | 59742985 | ID=Msa1204230-mRNA-1;Parent=Msa1204230;Name=Msa1204230-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|0|0|1|1|0|2|0|117 |
| chr8_1 | exon | 59742985 | 59743168 | 59742985 | ID=Msa1204230-mRNA-1:exon:19301;Parent=Msa1204230-mRNA-1 |
| chr8_1 | exon | 59743936 | 59744102 | 59743936 | ID=Msa1204230-mRNA-1:exon:19302;Parent=Msa1204230-mRNA-1 |
| chr8_1 | CDS | 59742985 | 59743168 | 59742985 | ID=Msa1204230-mRNA-1:cds;Parent=Msa1204230-mRNA-1 |
| chr8_1 | CDS | 59743936 | 59744102 | 59743936 | ID=Msa1204230-mRNA-1:cds;Parent=Msa1204230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
