Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1205310 | A0A2K3MEL2 | 69.231 | 117 | 30 | 2 | 55 | 166 | 3 | 118 | 1.26e-47 | 164 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1205310 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1205310 | MtrunA17_Chr1g0203051 | 34.320 | 169 | 100 | 4 | 3 | 166 | 6 | 168 | 2.17e-21 | 90.1 |
| Msa1205310 | MtrunA17_Chr1g0171741 | 32.984 | 191 | 98 | 5 | 4 | 166 | 33 | 221 | 6.65e-21 | 86.3 |
| Msa1205310 | MtrunA17_Chr8g0389811 | 38.938 | 113 | 63 | 2 | 59 | 166 | 62 | 173 | 4.38e-20 | 82.8 |
| Msa1205310 | MtrunA17_Chr6g0473421 | 45.882 | 85 | 37 | 2 | 68 | 152 | 55 | 130 | 6.64e-19 | 78.6 |
| Msa1205310 | MtrunA17_Chr2g0331371 | 46.809 | 94 | 41 | 2 | 68 | 161 | 55 | 139 | 2.17e-18 | 78.6 |
| Msa1205310 | MtrunA17_Chr1g0172931 | 39.316 | 117 | 61 | 4 | 49 | 159 | 46 | 158 | 7.13e-16 | 70.9 |
| Msa1205310 | MtrunA17_Chr2g0287651 | 41.772 | 79 | 45 | 1 | 81 | 159 | 80 | 157 | 1.81e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 41 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGGTTTGCTAGAATGTC+TGG | 0.244371 | 8_1:+61484347 | Msa1205310:CDS |
| AGCAATTGTGTTCAACGATA+TGG | 0.256143 | 8_1:+61484232 | Msa1205310:CDS |
| TATGTTCATGTGAAGGGTTT+AGG | 0.273663 | 8_1:+61484438 | Msa1205310:CDS |
| CTCTTCAGATTCGTCAGTTT+CGG | 0.286047 | 8_1:-61484165 | None:intergenic |
| ATGTTCATGTGAAGGGTTTA+GGG | 0.296316 | 8_1:+61484439 | Msa1205310:CDS |
| TGATATAATGAAGTTTAATA+TGG | 0.312879 | 8_1:+61484256 | Msa1205310:CDS |
| CATTACGTGGCTCACGCTTT+CGG | 0.334984 | 8_1:-61484487 | None:intergenic |
| TACGTAAGGGTCAAATGATT+AGG | 0.360442 | 8_1:+61484378 | Msa1205310:CDS |
| TTGCCTACATGTTCTATTGT+TGG | 0.362832 | 8_1:+61484330 | Msa1205310:CDS |
| TGAAGGGTTTAGGGAGAATA+GGG | 0.387710 | 8_1:+61484448 | Msa1205310:CDS |
| GTCTGGGTTCTCTGTACGTA+AGG | 0.426798 | 8_1:+61484364 | Msa1205310:CDS |
| GTGAAGGGTTTAGGGAGAAT+AGG | 0.437613 | 8_1:+61484447 | Msa1205310:CDS |
| ACGTAAGGGTCAAATGATTA+GGG | 0.438100 | 8_1:+61484379 | Msa1205310:CDS |
| CTCACGCTTTCGGTTCTCCC+TGG | 0.457913 | 8_1:-61484477 | None:intergenic |
| GCAATTGTGTTCAACGATAT+GGG | 0.462867 | 8_1:+61484233 | Msa1205310:CDS |
| TCTAGTAATGCAATCGTCTC+TGG | 0.474124 | 8_1:+61484113 | Msa1205310:CDS |
| TGAAACAAGATGTGGATGTA+AGG | 0.482330 | 8_1:+61484508 | Msa1205310:CDS |
| ATTCGTCAGTTTCGGCAGGC+AGG | 0.483967 | 8_1:-61484157 | None:intergenic |
| CGTTTGTATGTTCATGTGAA+GGG | 0.506489 | 8_1:+61484432 | Msa1205310:CDS |
| GTTGGTTTGCTAGAATGTCT+GGG | 0.525952 | 8_1:+61484348 | Msa1205310:CDS |
| ACGTTTGTATGTTCATGTGA+AGG | 0.528222 | 8_1:+61484431 | Msa1205310:CDS |
| TTCGTCAGTTTCGGCAGGCA+GGG | 0.535861 | 8_1:-61484156 | None:intergenic |
| CCACATCTTGTTTCATTACG+TGG | 0.542170 | 8_1:-61484500 | None:intergenic |
| TAGACATTGTTTCGAAGCGT+TGG | 0.543316 | 8_1:+61484549 | Msa1205310:CDS |
| TCAGATTCGTCAGTTTCGGC+AGG | 0.552694 | 8_1:-61484161 | None:intergenic |
| CGAAACTGACGAATCTGAAG+AGG | 0.574252 | 8_1:+61484166 | Msa1205310:CDS |
| GAAGGAGAAGATGGTTCAGA+AGG | 0.581835 | 8_1:+61484206 | Msa1205310:CDS |
| TGATTAGGGATCGTCAAGGA+GGG | 0.590586 | 8_1:+61484393 | Msa1205310:CDS |
| AACTGACGAATCTGAAGAGG+AGG | 0.591955 | 8_1:+61484169 | Msa1205310:CDS |
| AAACCAACAATAGAACATGT+AGG | 0.609954 | 8_1:-61484333 | None:intergenic |
| GATGGTAGTAATATATCAAG+TGG | 0.615902 | 8_1:+61484086 | Msa1205310:CDS |
| GGTAGTAATATATCAAGTGG+TGG | 0.633806 | 8_1:+61484089 | Msa1205310:CDS |
| TCTGGGTTCTCTGTACGTAA+GGG | 0.633998 | 8_1:+61484365 | Msa1205310:CDS |
| ATGATTAGGGATCGTCAAGG+AGG | 0.634745 | 8_1:+61484392 | Msa1205310:CDS |
| TTTGTGTGGATGATGTTGGA+AGG | 0.640334 | 8_1:+61484285 | Msa1205310:CDS |
| GAAGGGTTTAGGGAGAATAG+GGG | 0.644291 | 8_1:+61484449 | Msa1205310:CDS |
| GATTAGGGATCGTCAAGGAG+GGG | 0.648921 | 8_1:+61484394 | Msa1205310:CDS |
| AAGGGTTTAGGGAGAATAGG+GGG | 0.661605 | 8_1:+61484450 | Msa1205310:CDS |
| AACACGATAGAAGAAAGTGA+TGG | 0.695154 | 8_1:+61484068 | Msa1205310:CDS |
| CCACGTAATGAAACAAGATG+TGG | 0.700849 | 8_1:+61484500 | Msa1205310:CDS |
| CAAATGATTAGGGATCGTCA+AGG | 0.748193 | 8_1:+61484389 | Msa1205310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTATATTATTATTAGAAC+CGG | - | chr8_1:61483370-61483389 | None:intergenic | 10.0% |
| !! | TATTATATTATTATTAGAAC+CGG | - | chr8_1:61483370-61483389 | None:intergenic | 10.0% |
| !!! | TAAAAACAAAATGTTTTGAT+TGG | - | chr8_1:61483204-61483223 | None:intergenic | 15.0% |
| !! | ATTATATTATTATTAGAACC+GGG | - | chr8_1:61483369-61483388 | None:intergenic | 15.0% |
| !! | ATTATTATAAAAAACTGATG+CGG | - | chr8_1:61483417-61483436 | None:intergenic | 15.0% |
| !! | AAAAATGTTTAAAAAACTAG+TGG | - | chr8_1:61483471-61483490 | None:intergenic | 15.0% |
| !!! | GTTTAGATTAATCATTTTAA+TGG | + | chr8_1:61483710-61483729 | Msa1205310:intron | 15.0% |
| !! | AACAATAAATAAATAAGCTT+CGG | - | chr8_1:61483782-61483801 | None:intergenic | 15.0% |
| !! | TGATATAATGAAGTTTAATA+TGG | + | chr8_1:61484256-61484275 | Msa1205310:CDS | 15.0% |
| !!! | TAAAAACAAAATGTTTTGAT+TGG | - | chr8_1:61483204-61483223 | None:intergenic | 15.0% |
| !! | ATTATATTATTATTAGAACC+GGG | - | chr8_1:61483369-61483388 | None:intergenic | 15.0% |
| !! | ATTATTATAAAAAACTGATG+CGG | - | chr8_1:61483417-61483436 | None:intergenic | 15.0% |
| !! | AAAAATGTTTAAAAAACTAG+TGG | - | chr8_1:61483471-61483490 | None:intergenic | 15.0% |
| !!! | GTTTAGATTAATCATTTTAA+TGG | + | chr8_1:61483710-61483729 | Msa1205310:intron | 15.0% |
| !! | AACAATAAATAAATAAGCTT+CGG | - | chr8_1:61483782-61483801 | None:intergenic | 15.0% |
| !! | TGATATAATGAAGTTTAATA+TGG | + | chr8_1:61484256-61484275 | Msa1205310:CDS | 15.0% |
| !! | TTATTATAAAAAACTGATGC+GGG | - | chr8_1:61483416-61483435 | None:intergenic | 20.0% |
| !! | TATAAATAAGACAAATCATG+TGG | - | chr8_1:61483441-61483460 | None:intergenic | 20.0% |
| !! | AATGATTAATCTAAACAGAT+CGG | - | chr8_1:61483706-61483725 | None:intergenic | 20.0% |
| !!! | TGATTTAATTTGTATGTACA+AGG | + | chr8_1:61484014-61484033 | Msa1205310:intron | 20.0% |
| !!! | GATTTAATTTGTATGTACAA+GGG | + | chr8_1:61484015-61484034 | Msa1205310:intron | 20.0% |
| !! | TTATTATAAAAAACTGATGC+GGG | - | chr8_1:61483416-61483435 | None:intergenic | 20.0% |
| !! | TATAAATAAGACAAATCATG+TGG | - | chr8_1:61483441-61483460 | None:intergenic | 20.0% |
| !! | AATGATTAATCTAAACAGAT+CGG | - | chr8_1:61483706-61483725 | None:intergenic | 20.0% |
| !!! | TGATTTAATTTGTATGTACA+AGG | + | chr8_1:61484014-61484033 | Msa1205310:intron | 20.0% |
| !!! | GATTTAATTTGTATGTACAA+GGG | + | chr8_1:61484015-61484034 | Msa1205310:intron | 20.0% |
| !!! | CATTTTGTTTTTACCACTTA+TGG | + | chr8_1:61483211-61483230 | Msa1205310:intron | 25.0% |
| !!! | CAAAGTTAGGATTAGTTTAT+GGG | + | chr8_1:61483270-61483289 | Msa1205310:intron | 25.0% |
| !!! | AAAGTTAGGATTAGTTTATG+GGG | + | chr8_1:61483271-61483290 | Msa1205310:intron | 25.0% |
| ! | TATTATAAAAAACTGATGCG+GGG | - | chr8_1:61483415-61483434 | None:intergenic | 25.0% |
| ! | TAGACGACAAAGATAATTAT+TGG | + | chr8_1:61483518-61483537 | Msa1205310:intron | 25.0% |
| ! | AGACGACAAAGATAATTATT+GGG | + | chr8_1:61483519-61483538 | Msa1205310:intron | 25.0% |
| !!! | ATAATTATTGGGTTTTGTCA+AGG | + | chr8_1:61483530-61483549 | Msa1205310:intron | 25.0% |
| ! | ATGATTAATCTAAACAGATC+GGG | - | chr8_1:61483705-61483724 | None:intergenic | 25.0% |
| ! | AGTAGTTGGCAAATTAAAAT+GGG | - | chr8_1:61483738-61483757 | None:intergenic | 25.0% |
| ! | ATCATGTCAAATTGAAAAAC+TGG | - | chr8_1:61483988-61484007 | None:intergenic | 25.0% |
| !! | TAATATGGAAAACTTTTGTG+TGG | + | chr8_1:61484271-61484290 | Msa1205310:CDS | 25.0% |
| !! | AAGGTATGATTTTGTTAGTT+TGG | + | chr8_1:61484304-61484323 | Msa1205310:intron | 25.0% |
| !!! | CATTTTGTTTTTACCACTTA+TGG | + | chr8_1:61483211-61483230 | Msa1205310:intron | 25.0% |
| !!! | CAAAGTTAGGATTAGTTTAT+GGG | + | chr8_1:61483270-61483289 | Msa1205310:intron | 25.0% |
| !!! | AAAGTTAGGATTAGTTTATG+GGG | + | chr8_1:61483271-61483290 | Msa1205310:intron | 25.0% |
| ! | TATTATAAAAAACTGATGCG+GGG | - | chr8_1:61483415-61483434 | None:intergenic | 25.0% |
| ! | TAGACGACAAAGATAATTAT+TGG | + | chr8_1:61483518-61483537 | Msa1205310:intron | 25.0% |
| ! | AGACGACAAAGATAATTATT+GGG | + | chr8_1:61483519-61483538 | Msa1205310:intron | 25.0% |
| !!! | ATAATTATTGGGTTTTGTCA+AGG | + | chr8_1:61483530-61483549 | Msa1205310:intron | 25.0% |
| ! | ATGATTAATCTAAACAGATC+GGG | - | chr8_1:61483705-61483724 | None:intergenic | 25.0% |
| ! | AGTAGTTGGCAAATTAAAAT+GGG | - | chr8_1:61483738-61483757 | None:intergenic | 25.0% |
| ! | ATCATGTCAAATTGAAAAAC+TGG | - | chr8_1:61483988-61484007 | None:intergenic | 25.0% |
| !! | TAATATGGAAAACTTTTGTG+TGG | + | chr8_1:61484271-61484290 | Msa1205310:CDS | 25.0% |
| !! | AAGGTATGATTTTGTTAGTT+TGG | + | chr8_1:61484304-61484323 | Msa1205310:intron | 25.0% |
| ! | TTTTAATGCTTGTCCATAAG+TGG | - | chr8_1:61483227-61483246 | None:intergenic | 30.0% |
| CTAAAAGAATAGGCAAAGTT+AGG | + | chr8_1:61483257-61483276 | Msa1205310:intron | 30.0% | |
| !! | GCAAAGTTAGGATTAGTTTA+TGG | + | chr8_1:61483269-61483288 | Msa1205310:intron | 30.0% |
| AGGAAGAATAACATGCAATA+TGG | - | chr8_1:61483670-61483689 | None:intergenic | 30.0% | |
| !! | AGATCGGGTTGATTTATTAT+AGG | - | chr8_1:61483690-61483709 | None:intergenic | 30.0% |
| GAGTAGTTGGCAAATTAAAA+TGG | - | chr8_1:61483739-61483758 | None:intergenic | 30.0% | |
| GATGGTAGTAATATATCAAG+TGG | + | chr8_1:61484086-61484105 | Msa1205310:CDS | 30.0% | |
| AAACCAACAATAGAACATGT+AGG | - | chr8_1:61484336-61484355 | None:intergenic | 30.0% | |
| ! | TTTTAATGCTTGTCCATAAG+TGG | - | chr8_1:61483227-61483246 | None:intergenic | 30.0% |
| CTAAAAGAATAGGCAAAGTT+AGG | + | chr8_1:61483257-61483276 | Msa1205310:intron | 30.0% | |
| !! | GCAAAGTTAGGATTAGTTTA+TGG | + | chr8_1:61483269-61483288 | Msa1205310:intron | 30.0% |
| AGGAAGAATAACATGCAATA+TGG | - | chr8_1:61483670-61483689 | None:intergenic | 30.0% | |
| !! | AGATCGGGTTGATTTATTAT+AGG | - | chr8_1:61483690-61483709 | None:intergenic | 30.0% |
| GAGTAGTTGGCAAATTAAAA+TGG | - | chr8_1:61483739-61483758 | None:intergenic | 30.0% | |
| GATGGTAGTAATATATCAAG+TGG | + | chr8_1:61484086-61484105 | Msa1205310:CDS | 30.0% | |
| AAACCAACAATAGAACATGT+AGG | - | chr8_1:61484336-61484355 | None:intergenic | 30.0% | |
| ! | TGTCTGCTTGCTAAAAGAAT+AGG | + | chr8_1:61483247-61483266 | Msa1205310:intron | 35.0% |
| TTATCTTTGTCGTCTACAGT+TGG | - | chr8_1:61483514-61483533 | None:intergenic | 35.0% | |
| ! | ACATGCAATATGGATTACCT+TGG | - | chr8_1:61483660-61483679 | None:intergenic | 35.0% |
| GATGAAATCTGATGTTCGTT+AGG | + | chr8_1:61483867-61483886 | Msa1205310:intron | 35.0% | |
| !!! | GTTCGTTAGGTTTTGAGTTA+TGG | + | chr8_1:61483880-61483899 | Msa1205310:intron | 35.0% |
| !!! | AATCAGTTGTTTTTGGATGC+AGG | + | chr8_1:61483923-61483942 | Msa1205310:intron | 35.0% |
| AACACGATAGAAGAAAGTGA+TGG | + | chr8_1:61484068-61484087 | Msa1205310:CDS | 35.0% | |
| GGTAGTAATATATCAAGTGG+TGG | + | chr8_1:61484089-61484108 | Msa1205310:CDS | 35.0% | |
| AGCAATTGTGTTCAACGATA+TGG | + | chr8_1:61484232-61484251 | Msa1205310:CDS | 35.0% | |
| GCAATTGTGTTCAACGATAT+GGG | + | chr8_1:61484233-61484252 | Msa1205310:CDS | 35.0% | |
| ! | AACTTTTGTGTGGATGATGT+TGG | + | chr8_1:61484281-61484300 | Msa1205310:CDS | 35.0% |
| TTGCCTACATGTTCTATTGT+TGG | + | chr8_1:61484330-61484349 | Msa1205310:CDS | 35.0% | |
| TACGTAAGGGTCAAATGATT+AGG | + | chr8_1:61484378-61484397 | Msa1205310:CDS | 35.0% | |
| ACGTAAGGGTCAAATGATTA+GGG | + | chr8_1:61484379-61484398 | Msa1205310:CDS | 35.0% | |
| ACGTTTGTATGTTCATGTGA+AGG | + | chr8_1:61484431-61484450 | Msa1205310:CDS | 35.0% | |
| CGTTTGTATGTTCATGTGAA+GGG | + | chr8_1:61484432-61484451 | Msa1205310:CDS | 35.0% | |
| TATGTTCATGTGAAGGGTTT+AGG | + | chr8_1:61484438-61484457 | Msa1205310:CDS | 35.0% | |
| ATGTTCATGTGAAGGGTTTA+GGG | + | chr8_1:61484439-61484458 | Msa1205310:CDS | 35.0% | |
| TGAAACAAGATGTGGATGTA+AGG | + | chr8_1:61484508-61484527 | Msa1205310:CDS | 35.0% | |
| ! | TGTCTGCTTGCTAAAAGAAT+AGG | + | chr8_1:61483247-61483266 | Msa1205310:intron | 35.0% |
| TTATCTTTGTCGTCTACAGT+TGG | - | chr8_1:61483514-61483533 | None:intergenic | 35.0% | |
| ! | ACATGCAATATGGATTACCT+TGG | - | chr8_1:61483660-61483679 | None:intergenic | 35.0% |
| GATGAAATCTGATGTTCGTT+AGG | + | chr8_1:61483867-61483886 | Msa1205310:intron | 35.0% | |
| !!! | GTTCGTTAGGTTTTGAGTTA+TGG | + | chr8_1:61483880-61483899 | Msa1205310:intron | 35.0% |
| !!! | AATCAGTTGTTTTTGGATGC+AGG | + | chr8_1:61483923-61483942 | Msa1205310:intron | 35.0% |
| AACACGATAGAAGAAAGTGA+TGG | + | chr8_1:61484068-61484087 | Msa1205310:CDS | 35.0% | |
| GGTAGTAATATATCAAGTGG+TGG | + | chr8_1:61484089-61484108 | Msa1205310:CDS | 35.0% | |
| AGCAATTGTGTTCAACGATA+TGG | + | chr8_1:61484232-61484251 | Msa1205310:CDS | 35.0% | |
| GCAATTGTGTTCAACGATAT+GGG | + | chr8_1:61484233-61484252 | Msa1205310:CDS | 35.0% | |
| ! | AACTTTTGTGTGGATGATGT+TGG | + | chr8_1:61484281-61484300 | Msa1205310:CDS | 35.0% |
| TTGCCTACATGTTCTATTGT+TGG | + | chr8_1:61484330-61484349 | Msa1205310:CDS | 35.0% | |
| TACGTAAGGGTCAAATGATT+AGG | + | chr8_1:61484378-61484397 | Msa1205310:CDS | 35.0% | |
| ACGTAAGGGTCAAATGATTA+GGG | + | chr8_1:61484379-61484398 | Msa1205310:CDS | 35.0% | |
| ACGTTTGTATGTTCATGTGA+AGG | + | chr8_1:61484431-61484450 | Msa1205310:CDS | 35.0% | |
| CGTTTGTATGTTCATGTGAA+GGG | + | chr8_1:61484432-61484451 | Msa1205310:CDS | 35.0% | |
| TATGTTCATGTGAAGGGTTT+AGG | + | chr8_1:61484438-61484457 | Msa1205310:CDS | 35.0% | |
| ATGTTCATGTGAAGGGTTTA+GGG | + | chr8_1:61484439-61484458 | Msa1205310:CDS | 35.0% | |
| TGAAACAAGATGTGGATGTA+AGG | + | chr8_1:61484508-61484527 | Msa1205310:CDS | 35.0% | |
| !! | CGATATGATTTGGTCTCTCA+CGG | - | chr8_1:61483304-61483323 | None:intergenic | 40.0% |
| TGGGGGAAAAAACTGTGTAT+TGG | + | chr8_1:61483336-61483355 | Msa1205310:intron | 40.0% | |
| GGGAAAAAACTGTGTATTGG+AGG | + | chr8_1:61483339-61483358 | Msa1205310:intron | 40.0% | |
| ! | AACCAGATCTTTTGCTTGAG+AGG | + | chr8_1:61483560-61483579 | Msa1205310:intron | 40.0% |
| ACAAAAACAGTTGCAACCGA+CGG | + | chr8_1:61483610-61483629 | Msa1205310:intron | 40.0% | |
| ATCAAGCGCAAAGATTTCCA+AGG | + | chr8_1:61483640-61483659 | Msa1205310:intron | 40.0% | |
| GCAACAGATTTCAGAGTAGT+TGG | - | chr8_1:61483752-61483771 | None:intergenic | 40.0% | |
| AGTTATGGATCGTAGATCAG+AGG | + | chr8_1:61483895-61483914 | Msa1205310:intron | 40.0% | |
| GTTATGGATCGTAGATCAGA+GGG | + | chr8_1:61483896-61483915 | Msa1205310:intron | 40.0% | |
| !! | GGGTGGAAATCAGTTGTTTT+TGG | + | chr8_1:61483916-61483935 | Msa1205310:intron | 40.0% |
| !!! | TTGTTTTTGGATGCAGGTCT+GGG | + | chr8_1:61483929-61483948 | Msa1205310:intron | 40.0% |
| TCTAGTAATGCAATCGTCTC+TGG | + | chr8_1:61484113-61484132 | Msa1205310:CDS | 40.0% | |
| CTCTTCAGATTCGTCAGTTT+CGG | - | chr8_1:61484168-61484187 | None:intergenic | 40.0% | |
| ! | GAGGCAAATTCTTTTGACGA+AGG | + | chr8_1:61484188-61484207 | Msa1205310:CDS | 40.0% |
| ! | TCTTTTGACGAAGGAGAAGA+TGG | + | chr8_1:61484197-61484216 | Msa1205310:CDS | 40.0% |
| TTTGTGTGGATGATGTTGGA+AGG | + | chr8_1:61484285-61484304 | Msa1205310:CDS | 40.0% | |
| !! | TGTTGGTTTGCTAGAATGTC+TGG | + | chr8_1:61484347-61484366 | Msa1205310:CDS | 40.0% |
| !! | GTTGGTTTGCTAGAATGTCT+GGG | + | chr8_1:61484348-61484367 | Msa1205310:CDS | 40.0% |
| CAAATGATTAGGGATCGTCA+AGG | + | chr8_1:61484389-61484408 | Msa1205310:CDS | 40.0% | |
| TGAAGGGTTTAGGGAGAATA+GGG | + | chr8_1:61484448-61484467 | Msa1205310:CDS | 40.0% | |
| ! | CCACATCTTGTTTCATTACG+TGG | - | chr8_1:61484503-61484522 | None:intergenic | 40.0% |
| CCACGTAATGAAACAAGATG+TGG | + | chr8_1:61484500-61484519 | Msa1205310:CDS | 40.0% | |
| !! | CGATATGATTTGGTCTCTCA+CGG | - | chr8_1:61483304-61483323 | None:intergenic | 40.0% |
| TGGGGGAAAAAACTGTGTAT+TGG | + | chr8_1:61483336-61483355 | Msa1205310:intron | 40.0% | |
| GGGAAAAAACTGTGTATTGG+AGG | + | chr8_1:61483339-61483358 | Msa1205310:intron | 40.0% | |
| ! | AACCAGATCTTTTGCTTGAG+AGG | + | chr8_1:61483560-61483579 | Msa1205310:intron | 40.0% |
| ACAAAAACAGTTGCAACCGA+CGG | + | chr8_1:61483610-61483629 | Msa1205310:intron | 40.0% | |
| ATCAAGCGCAAAGATTTCCA+AGG | + | chr8_1:61483640-61483659 | Msa1205310:intron | 40.0% | |
| GCAACAGATTTCAGAGTAGT+TGG | - | chr8_1:61483752-61483771 | None:intergenic | 40.0% | |
| AGTTATGGATCGTAGATCAG+AGG | + | chr8_1:61483895-61483914 | Msa1205310:intron | 40.0% | |
| GTTATGGATCGTAGATCAGA+GGG | + | chr8_1:61483896-61483915 | Msa1205310:intron | 40.0% | |
| !! | GGGTGGAAATCAGTTGTTTT+TGG | + | chr8_1:61483916-61483935 | Msa1205310:intron | 40.0% |
| !!! | TTGTTTTTGGATGCAGGTCT+GGG | + | chr8_1:61483929-61483948 | Msa1205310:intron | 40.0% |
| TCTAGTAATGCAATCGTCTC+TGG | + | chr8_1:61484113-61484132 | Msa1205310:CDS | 40.0% | |
| CTCTTCAGATTCGTCAGTTT+CGG | - | chr8_1:61484168-61484187 | None:intergenic | 40.0% | |
| ! | GAGGCAAATTCTTTTGACGA+AGG | + | chr8_1:61484188-61484207 | Msa1205310:CDS | 40.0% |
| ! | TCTTTTGACGAAGGAGAAGA+TGG | + | chr8_1:61484197-61484216 | Msa1205310:CDS | 40.0% |
| TTTGTGTGGATGATGTTGGA+AGG | + | chr8_1:61484285-61484304 | Msa1205310:CDS | 40.0% | |
| !! | TGTTGGTTTGCTAGAATGTC+TGG | + | chr8_1:61484347-61484366 | Msa1205310:CDS | 40.0% |
| !! | GTTGGTTTGCTAGAATGTCT+GGG | + | chr8_1:61484348-61484367 | Msa1205310:CDS | 40.0% |
| CAAATGATTAGGGATCGTCA+AGG | + | chr8_1:61484389-61484408 | Msa1205310:CDS | 40.0% | |
| TGAAGGGTTTAGGGAGAATA+GGG | + | chr8_1:61484448-61484467 | Msa1205310:CDS | 40.0% | |
| ! | CCACATCTTGTTTCATTACG+TGG | - | chr8_1:61484503-61484522 | None:intergenic | 40.0% |
| CCACGTAATGAAACAAGATG+TGG | + | chr8_1:61484500-61484519 | Msa1205310:CDS | 40.0% | |
| CCATCGTGAGCGATATGATT+TGG | - | chr8_1:61483314-61483333 | None:intergenic | 45.0% | |
| CCAAATCATATCGCTCACGA+TGG | + | chr8_1:61483311-61483330 | Msa1205310:intron | 45.0% | |
| TCATATCGCTCACGATGGTT+TGG | + | chr8_1:61483316-61483335 | Msa1205310:intron | 45.0% | |
| CATATCGCTCACGATGGTTT+GGG | + | chr8_1:61483317-61483336 | Msa1205310:intron | 45.0% | |
| ATATCGCTCACGATGGTTTG+GGG | + | chr8_1:61483318-61483337 | Msa1205310:intron | 45.0% | |
| CTGTGTATTGGAGGTTTACC+CGG | + | chr8_1:61483348-61483367 | Msa1205310:intron | 45.0% | |
| AGCCTCTCAAGCAAAAGATC+TGG | - | chr8_1:61483565-61483584 | None:intergenic | 45.0% | |
| ! | TTTTGCTTGAGAGGCTCTTG+TGG | + | chr8_1:61483569-61483588 | Msa1205310:intron | 45.0% |
| !!! | GTTGTTTTTGGATGCAGGTC+TGG | + | chr8_1:61483928-61483947 | Msa1205310:intron | 45.0% |
| CGAAACTGACGAATCTGAAG+AGG | + | chr8_1:61484166-61484185 | Msa1205310:CDS | 45.0% | |
| AACTGACGAATCTGAAGAGG+AGG | + | chr8_1:61484169-61484188 | Msa1205310:CDS | 45.0% | |
| GAAGGAGAAGATGGTTCAGA+AGG | + | chr8_1:61484206-61484225 | Msa1205310:CDS | 45.0% | |
| TCTGGGTTCTCTGTACGTAA+GGG | + | chr8_1:61484365-61484384 | Msa1205310:CDS | 45.0% | |
| ATGATTAGGGATCGTCAAGG+AGG | + | chr8_1:61484392-61484411 | Msa1205310:CDS | 45.0% | |
| TGATTAGGGATCGTCAAGGA+GGG | + | chr8_1:61484393-61484412 | Msa1205310:CDS | 45.0% | |
| GTGAAGGGTTTAGGGAGAAT+AGG | + | chr8_1:61484447-61484466 | Msa1205310:CDS | 45.0% | |
| GAAGGGTTTAGGGAGAATAG+GGG | + | chr8_1:61484449-61484468 | Msa1205310:CDS | 45.0% | |
| AAGGGTTTAGGGAGAATAGG+GGG | + | chr8_1:61484450-61484469 | Msa1205310:CDS | 45.0% | |
| CCATCGTGAGCGATATGATT+TGG | - | chr8_1:61483314-61483333 | None:intergenic | 45.0% | |
| CCAAATCATATCGCTCACGA+TGG | + | chr8_1:61483311-61483330 | Msa1205310:intron | 45.0% | |
| TCATATCGCTCACGATGGTT+TGG | + | chr8_1:61483316-61483335 | Msa1205310:intron | 45.0% | |
| CATATCGCTCACGATGGTTT+GGG | + | chr8_1:61483317-61483336 | Msa1205310:intron | 45.0% | |
| ATATCGCTCACGATGGTTTG+GGG | + | chr8_1:61483318-61483337 | Msa1205310:intron | 45.0% | |
| CTGTGTATTGGAGGTTTACC+CGG | + | chr8_1:61483348-61483367 | Msa1205310:intron | 45.0% | |
| AGCCTCTCAAGCAAAAGATC+TGG | - | chr8_1:61483565-61483584 | None:intergenic | 45.0% | |
| ! | TTTTGCTTGAGAGGCTCTTG+TGG | + | chr8_1:61483569-61483588 | Msa1205310:intron | 45.0% |
| !!! | GTTGTTTTTGGATGCAGGTC+TGG | + | chr8_1:61483928-61483947 | Msa1205310:intron | 45.0% |
| CGAAACTGACGAATCTGAAG+AGG | + | chr8_1:61484166-61484185 | Msa1205310:CDS | 45.0% | |
| AACTGACGAATCTGAAGAGG+AGG | + | chr8_1:61484169-61484188 | Msa1205310:CDS | 45.0% | |
| GAAGGAGAAGATGGTTCAGA+AGG | + | chr8_1:61484206-61484225 | Msa1205310:CDS | 45.0% | |
| TCTGGGTTCTCTGTACGTAA+GGG | + | chr8_1:61484365-61484384 | Msa1205310:CDS | 45.0% | |
| ATGATTAGGGATCGTCAAGG+AGG | + | chr8_1:61484392-61484411 | Msa1205310:CDS | 45.0% | |
| TGATTAGGGATCGTCAAGGA+GGG | + | chr8_1:61484393-61484412 | Msa1205310:CDS | 45.0% | |
| GTGAAGGGTTTAGGGAGAAT+AGG | + | chr8_1:61484447-61484466 | Msa1205310:CDS | 45.0% | |
| GAAGGGTTTAGGGAGAATAG+GGG | + | chr8_1:61484449-61484468 | Msa1205310:CDS | 45.0% | |
| AAGGGTTTAGGGAGAATAGG+GGG | + | chr8_1:61484450-61484469 | Msa1205310:CDS | 45.0% | |
| !!! | TATTGTTTTTAAAATAAATA+AGG | + | chr8_1:61483795-61483814 | Msa1205310:intron | 5.0% |
| !!! | TATTGTTTTTAAAATAAATA+AGG | + | chr8_1:61483795-61483814 | Msa1205310:intron | 5.0% |
| ! | TATCGCTCACGATGGTTTGG+GGG | + | chr8_1:61483319-61483338 | Msa1205310:intron | 50.0% |
| GCGCTTGATTTACTCTCCGT+CGG | - | chr8_1:61483629-61483648 | None:intergenic | 50.0% | |
| ATGGATCGTAGATCAGAGGG+TGG | + | chr8_1:61483899-61483918 | Msa1205310:intron | 50.0% | |
| TCAGATTCGTCAGTTTCGGC+AGG | - | chr8_1:61484164-61484183 | None:intergenic | 50.0% | |
| GTCTGGGTTCTCTGTACGTA+AGG | + | chr8_1:61484364-61484383 | Msa1205310:CDS | 50.0% | |
| GATTAGGGATCGTCAAGGAG+GGG | + | chr8_1:61484394-61484413 | Msa1205310:CDS | 50.0% | |
| CATTACGTGGCTCACGCTTT+CGG | - | chr8_1:61484490-61484509 | None:intergenic | 50.0% | |
| ! | TATCGCTCACGATGGTTTGG+GGG | + | chr8_1:61483319-61483338 | Msa1205310:intron | 50.0% |
| GCGCTTGATTTACTCTCCGT+CGG | - | chr8_1:61483629-61483648 | None:intergenic | 50.0% | |
| ATGGATCGTAGATCAGAGGG+TGG | + | chr8_1:61483899-61483918 | Msa1205310:intron | 50.0% | |
| TCAGATTCGTCAGTTTCGGC+AGG | - | chr8_1:61484164-61484183 | None:intergenic | 50.0% | |
| GTCTGGGTTCTCTGTACGTA+AGG | + | chr8_1:61484364-61484383 | Msa1205310:CDS | 50.0% | |
| GATTAGGGATCGTCAAGGAG+GGG | + | chr8_1:61484394-61484413 | Msa1205310:CDS | 50.0% | |
| CATTACGTGGCTCACGCTTT+CGG | - | chr8_1:61484490-61484509 | None:intergenic | 50.0% | |
| TTCGTCAGTTTCGGCAGGCA+GGG | - | chr8_1:61484159-61484178 | None:intergenic | 55.0% | |
| ATTCGTCAGTTTCGGCAGGC+AGG | - | chr8_1:61484160-61484179 | None:intergenic | 55.0% | |
| GGAGAATAGGGGGCTAACCA+GGG | + | chr8_1:61484460-61484479 | Msa1205310:CDS | 55.0% | |
| TTCGTCAGTTTCGGCAGGCA+GGG | - | chr8_1:61484159-61484178 | None:intergenic | 55.0% | |
| ATTCGTCAGTTTCGGCAGGC+AGG | - | chr8_1:61484160-61484179 | None:intergenic | 55.0% | |
| GGAGAATAGGGGGCTAACCA+GGG | + | chr8_1:61484460-61484479 | Msa1205310:CDS | 55.0% | |
| GGGAGAATAGGGGGCTAACC+AGG | + | chr8_1:61484459-61484478 | Msa1205310:CDS | 60.0% | |
| CTCACGCTTTCGGTTCTCCC+TGG | - | chr8_1:61484480-61484499 | None:intergenic | 60.0% | |
| GGGAGAATAGGGGGCTAACC+AGG | + | chr8_1:61484459-61484478 | Msa1205310:CDS | 60.0% | |
| CTCACGCTTTCGGTTCTCCC+TGG | - | chr8_1:61484480-61484499 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 61483184 | 61484568 | 61483184 | ID=Msa1205310;Name=Msa1205310 |
| chr8_1 | mRNA | 61483184 | 61484568 | 61483184 | ID=Msa1205310-mRNA-1;Parent=Msa1205310;Name=Msa1205310-mRNA-1;_AED=0.44;_eAED=0.45;_QI=0|0|0|0.75|0.33|0.5|4|0|166 |
| chr8_1 | exon | 61483184 | 61483189 | 61483184 | ID=Msa1205310-mRNA-1:exon:19965;Parent=Msa1205310-mRNA-1 |
| chr8_1 | exon | 61483945 | 61483950 | 61483945 | ID=Msa1205310-mRNA-1:exon:19966;Parent=Msa1205310-mRNA-1 |
| chr8_1 | exon | 61484068 | 61484306 | 61484068 | ID=Msa1205310-mRNA-1:exon:19967;Parent=Msa1205310-mRNA-1 |
| chr8_1 | exon | 61484322 | 61484568 | 61484322 | ID=Msa1205310-mRNA-1:exon:19968;Parent=Msa1205310-mRNA-1 |
| chr8_1 | CDS | 61483184 | 61483189 | 61483184 | ID=Msa1205310-mRNA-1:cds;Parent=Msa1205310-mRNA-1 |
| chr8_1 | CDS | 61483945 | 61483950 | 61483945 | ID=Msa1205310-mRNA-1:cds;Parent=Msa1205310-mRNA-1 |
| chr8_1 | CDS | 61484068 | 61484306 | 61484068 | ID=Msa1205310-mRNA-1:cds;Parent=Msa1205310-mRNA-1 |
| chr8_1 | CDS | 61484322 | 61484568 | 61484322 | ID=Msa1205310-mRNA-1:cds;Parent=Msa1205310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
