Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1206870 | sp|F4IXE7|IDM1_ARATH | 32.458 | 419 | 245 | 14 | 143 | 537 | 619 | 1023 | 6.26e-57 | 209 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1206870 | A0A072UPL4 | 82.983 | 523 | 46 | 3 | 65 | 554 | 3 | 515 | 0.0 | 890 |
Gene ID | Type | Classification |
---|---|---|
Msa1206870 | TR | PHD |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1206870 | MtrunA17_Chr4g0055731 | 77.438 | 523 | 46 | 4 | 65 | 554 | 3 | 486 | 0.0 | 816 |
Msa1206870 | MtrunA17_Chr1g0205451 | 33.705 | 448 | 250 | 14 | 142 | 554 | 603 | 1038 | 8.61e-66 | 232 |
Msa1206870 | MtrunA17_Chr1g0185491 | 32.783 | 424 | 245 | 11 | 142 | 537 | 809 | 1220 | 4.36e-62 | 221 |
Msa1206870 | MtrunA17_Chr2g0316251 | 30.353 | 425 | 258 | 14 | 139 | 537 | 754 | 1166 | 7.86e-53 | 194 |
Msa1206870 | MtrunA17_Chr5g0430361 | 28.289 | 456 | 281 | 17 | 111 | 537 | 619 | 1057 | 1.20e-47 | 178 |
Msa1206870 | MtrunA17_Chr3g0105291 | 26.667 | 450 | 283 | 15 | 122 | 544 | 585 | 1014 | 1.86e-45 | 172 |
Msa1206870 | MtrunA17_Chr7g0270101 | 28.894 | 398 | 233 | 11 | 144 | 510 | 383 | 761 | 8.12e-42 | 160 |
Msa1206870 | MtrunA17_Chr5g0407251 | 26.932 | 427 | 268 | 11 | 145 | 537 | 3 | 419 | 5.53e-40 | 150 |
Msa1206870 | MtrunA17_Chr5g0407211 | 26.698 | 427 | 269 | 11 | 145 | 537 | 3 | 419 | 3.56e-39 | 148 |
Msa1206870 | MtrunA17_Chr3g0134821 | 23.368 | 475 | 298 | 14 | 105 | 537 | 382 | 832 | 6.16e-32 | 131 |
Msa1206870 | MtrunA17_Chr3g0134811 | 28.076 | 317 | 196 | 9 | 239 | 537 | 489 | 791 | 9.43e-32 | 130 |
Msa1206870 | MtrunA17_Chr7g0259981 | 28.431 | 306 | 198 | 8 | 250 | 551 | 17 | 305 | 1.07e-30 | 122 |
Msa1206870 | MtrunA17_Chr1g0182481 | 24.263 | 441 | 237 | 15 | 155 | 527 | 472 | 883 | 3.34e-28 | 119 |
Msa1206870 | MtrunA17_Chr1g0179841 | 23.913 | 460 | 254 | 13 | 155 | 537 | 362 | 802 | 2.44e-27 | 117 |
Msa1206870 | MtrunA17_Chr3g0134851 | 27.877 | 391 | 215 | 11 | 172 | 537 | 116 | 464 | 2.41e-26 | 112 |
Msa1206870 | MtrunA17_Chr7g0265211 | 22.727 | 440 | 239 | 15 | 155 | 515 | 507 | 924 | 3.50e-26 | 113 |
Msa1206870 | MtrunA17_Chr2g0320451 | 25.714 | 175 | 125 | 2 | 364 | 535 | 849 | 1021 | 2.08e-17 | 86.3 |
Msa1206870 | MtrunA17_Chr4g0025251 | 25.385 | 260 | 161 | 8 | 307 | 538 | 448 | 702 | 6.11e-17 | 84.3 |
Msa1206870 | MtrunA17_Chr4g0028111 | 21.376 | 407 | 215 | 13 | 185 | 511 | 181 | 562 | 2.20e-15 | 79.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1206870 | AT4G14920.3 | 35.154 | 421 | 236 | 11 | 142 | 538 | 577 | 984 | 3.88e-69 | 242 |
Msa1206870 | AT4G14920.2 | 35.154 | 421 | 236 | 11 | 142 | 538 | 577 | 984 | 4.26e-69 | 241 |
Msa1206870 | AT4G14920.1 | 35.154 | 421 | 236 | 11 | 142 | 538 | 577 | 984 | 4.26e-69 | 241 |
Msa1206870 | AT5G36740.5 | 34.014 | 441 | 256 | 11 | 124 | 538 | 519 | 950 | 1.32e-68 | 240 |
Msa1206870 | AT5G36740.1 | 34.014 | 441 | 256 | 11 | 124 | 538 | 519 | 950 | 1.32e-68 | 240 |
Msa1206870 | AT5G36740.4 | 34.112 | 428 | 242 | 11 | 142 | 538 | 389 | 807 | 7.51e-68 | 237 |
Msa1206870 | AT1G05380.3 | 33.721 | 430 | 240 | 13 | 142 | 542 | 517 | 930 | 8.07e-67 | 235 |
Msa1206870 | AT1G05380.1 | 33.721 | 430 | 240 | 13 | 142 | 542 | 517 | 930 | 8.07e-67 | 235 |
Msa1206870 | AT1G05380.2 | 33.721 | 430 | 240 | 13 | 142 | 542 | 517 | 930 | 8.07e-67 | 235 |
Msa1206870 | AT5G36670.4 | 31.729 | 457 | 259 | 13 | 124 | 538 | 519 | 964 | 3.14e-58 | 210 |
Msa1206870 | AT5G36670.5 | 31.729 | 457 | 259 | 13 | 124 | 538 | 519 | 964 | 3.14e-58 | 210 |
Msa1206870 | AT3G14980.5 | 32.458 | 419 | 245 | 14 | 143 | 537 | 574 | 978 | 5.46e-58 | 209 |
Msa1206870 | AT3G14980.6 | 32.458 | 419 | 245 | 14 | 143 | 537 | 619 | 1023 | 6.36e-58 | 209 |
Msa1206870 | AT3G14980.1 | 32.458 | 419 | 245 | 14 | 143 | 537 | 619 | 1023 | 6.36e-58 | 209 |
Msa1206870 | AT3G14980.2 | 32.458 | 419 | 245 | 14 | 143 | 537 | 619 | 1023 | 6.36e-58 | 209 |
Msa1206870 | AT3G14980.3 | 32.458 | 419 | 245 | 14 | 143 | 537 | 619 | 1023 | 1.21e-57 | 208 |
Msa1206870 | AT5G36670.3 | 31.757 | 444 | 245 | 13 | 142 | 538 | 389 | 821 | 2.23e-57 | 207 |
Msa1206870 | AT5G36670.1 | 31.263 | 467 | 258 | 14 | 124 | 538 | 519 | 974 | 5.94e-57 | 206 |
Msa1206870 | AT5G36670.2 | 32.984 | 382 | 222 | 10 | 124 | 479 | 519 | 892 | 2.78e-52 | 192 |
Msa1206870 | AT5G36740.2 | 32.984 | 382 | 222 | 10 | 124 | 479 | 519 | 892 | 2.78e-52 | 192 |
Msa1206870 | AT5G36740.3 | 32.984 | 382 | 222 | 10 | 124 | 479 | 519 | 892 | 2.78e-52 | 192 |
Msa1206870 | AT5G58610.4 | 27.778 | 432 | 265 | 14 | 139 | 538 | 362 | 778 | 5.64e-41 | 159 |
Msa1206870 | AT5G58610.7 | 27.778 | 432 | 265 | 14 | 139 | 538 | 584 | 1000 | 8.09e-41 | 159 |
Msa1206870 | AT5G58610.3 | 27.778 | 432 | 265 | 14 | 139 | 538 | 593 | 1009 | 8.73e-41 | 158 |
Msa1206870 | AT5G58610.8 | 27.778 | 432 | 265 | 14 | 139 | 538 | 593 | 1009 | 9.40e-41 | 158 |
Msa1206870 | AT5G58610.2 | 27.778 | 432 | 265 | 14 | 139 | 538 | 593 | 1009 | 9.40e-41 | 158 |
Msa1206870 | AT5G58610.5 | 27.778 | 432 | 265 | 14 | 139 | 538 | 584 | 1000 | 1.16e-40 | 158 |
Msa1206870 | AT5G58610.1 | 26.303 | 422 | 258 | 13 | 139 | 538 | 584 | 974 | 6.79e-38 | 150 |
Msa1206870 | AT5G58610.6 | 26.303 | 422 | 258 | 13 | 139 | 538 | 584 | 974 | 1.15e-37 | 149 |
Msa1206870 | AT3G14980.4 | 31.003 | 329 | 190 | 13 | 143 | 447 | 619 | 934 | 1.40e-34 | 139 |
Msa1206870 | AT5G58610.10 | 27.513 | 378 | 228 | 13 | 139 | 484 | 593 | 956 | 2.31e-32 | 133 |
Msa1206870 | AT5G58610.9 | 27.513 | 378 | 228 | 13 | 139 | 484 | 584 | 947 | 4.25e-32 | 132 |
Msa1206870 | AT2G37520.1 | 23.736 | 455 | 250 | 15 | 155 | 537 | 386 | 815 | 7.41e-32 | 131 |
Msa1206870 | AT3G53680.2 | 24.390 | 451 | 251 | 16 | 155 | 537 | 405 | 833 | 2.69e-31 | 129 |
Msa1206870 | AT3G53680.1 | 24.390 | 451 | 251 | 16 | 155 | 537 | 403 | 831 | 2.78e-31 | 129 |
Msa1206870 | AT2G27980.1 | 24.731 | 465 | 248 | 16 | 155 | 537 | 613 | 1057 | 5.64e-30 | 125 |
Msa1206870 | AT2G36720.1 | 24.078 | 461 | 248 | 16 | 155 | 535 | 533 | 971 | 7.04e-29 | 122 |
Msa1206870 | AT2G36720.2 | 24.078 | 461 | 248 | 16 | 155 | 535 | 533 | 971 | 7.04e-29 | 122 |
Msa1206870 | AT5G58610.11 | 26.765 | 340 | 203 | 13 | 139 | 446 | 584 | 909 | 7.45e-24 | 106 |
Msa1206870 | AT5G63900.1 | 25.763 | 295 | 204 | 8 | 246 | 537 | 258 | 540 | 7.50e-22 | 99.8 |
Find 119 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATTCCCATTGATATTATTT+TGG | 0.141230 | 8_1:-64041864 | None:intergenic |
ACGAATTTGCCATTTGTTAA+TGG | 0.158481 | 8_1:+64042734 | Msa1206870:CDS |
TCACTTATTTCCACATAATT+TGG | 0.186213 | 8_1:-64040524 | None:intergenic |
TCCCAGAAATTACCTATTTC+AGG | 0.195115 | 8_1:-64040644 | None:intergenic |
GACCTGAAATAGGTAATTTC+TGG | 0.234540 | 8_1:+64040642 | Msa1206870:CDS |
CTTTCAACCATTTACTAATC+AGG | 0.274878 | 8_1:-64041153 | None:intergenic |
ATTTACTAATCAGGATGTTT+TGG | 0.283205 | 8_1:-64041144 | None:intergenic |
AAACTGTGAAAGATTTATTA+AGG | 0.284878 | 8_1:+64041690 | Msa1206870:CDS |
TTGAAAATTCGACCGGTTAT+CGG | 0.303297 | 8_1:-64040998 | None:intergenic |
AAAACATCCTGATTAGTAAA+TGG | 0.312020 | 8_1:+64041146 | Msa1206870:CDS |
TCCGGATTAATACTCGTTTC+CGG | 0.320410 | 8_1:-64040740 | None:intergenic |
TCAACAGTTTGTGGATTAGA+TGG | 0.321798 | 8_1:-64043126 | None:intergenic |
TGCTTCTAATTGACAGTATT+AGG | 0.322640 | 8_1:-64043300 | None:intergenic |
CCTTGACTCTACAGATTTCA+TGG | 0.325979 | 8_1:+64042657 | Msa1206870:intron |
TGGACTTGAATGAGCCATTC+GGG | 0.345809 | 8_1:+64043268 | Msa1206870:CDS |
TCCATTGGCAAACTTTGTTC+CGG | 0.346997 | 8_1:-64040758 | None:intergenic |
TTGAAGGGTTAGAAGCAAAC+TGG | 0.364828 | 8_1:+64040573 | Msa1206870:CDS |
CTTGTTTCGTTCATTGATGA+TGG | 0.366832 | 8_1:-64040788 | None:intergenic |
AAATTACCTATTTCAGGTCT+TGG | 0.368746 | 8_1:-64040638 | None:intergenic |
CGTAGACCAAGACCTGAAAT+AGG | 0.369525 | 8_1:+64040632 | Msa1206870:CDS |
TAAACAAACAATGTCATGTA+TGG | 0.389738 | 8_1:-64041215 | None:intergenic |
GCATACCTCTTTACAACTTA+CGG | 0.394078 | 8_1:-64041723 | None:intergenic |
TGCAGCTGCTTGCATGTTGA+TGG | 0.397741 | 8_1:+64041963 | Msa1206870:CDS |
GCAACCATACAAACGCATTT+CGG | 0.399165 | 8_1:+64041099 | Msa1206870:CDS |
GTTTGTTTAGTTTGTGGAAA+AGG | 0.400119 | 8_1:+64041229 | Msa1206870:CDS |
TGAAATAGCTACCATTGTTC+CGG | 0.403012 | 8_1:+64040721 | Msa1206870:CDS |
GCTATTTCATTCACCGATGA+TGG | 0.410514 | 8_1:-64040707 | None:intergenic |
TCAACAAACAAGTCATAATC+TGG | 0.410645 | 8_1:+64040817 | Msa1206870:CDS |
ATGGGAATGAGAGGTATTCT+TGG | 0.411367 | 8_1:+64041878 | Msa1206870:CDS |
TACACTGCTTGTTGCATTGG+CGG | 0.412327 | 8_1:-64041529 | None:intergenic |
ACTTACACTGCTTGTTGCAT+TGG | 0.420126 | 8_1:-64041532 | None:intergenic |
GACATTGTTTGTTTAGTTTG+TGG | 0.426333 | 8_1:+64041223 | Msa1206870:CDS |
CTGCAAGTGCAAATACTGTA+AGG | 0.426643 | 8_1:+64041469 | Msa1206870:CDS |
GGAATCCAAAATAATATCAA+TGG | 0.427814 | 8_1:+64041859 | Msa1206870:CDS |
ATTAAGCAAAAGACTTCTAC+TGG | 0.430490 | 8_1:+64043248 | Msa1206870:CDS |
CTGGACTTGAATGAGCCATT+CGG | 0.434486 | 8_1:+64043267 | Msa1206870:CDS |
GAAGTCCCCGCTGTTGCGCT+TGG | 0.436355 | 8_1:-64040866 | None:intergenic |
AAAGATTGATGAGAAATTGA+AGG | 0.437819 | 8_1:+64041828 | Msa1206870:intron |
GAGAAATTGAAGGGATCAAT+CGG | 0.439072 | 8_1:+64041838 | Msa1206870:CDS |
ACCTGAAATAGGTAATTTCT+GGG | 0.445985 | 8_1:+64040643 | Msa1206870:CDS |
CAATTATCTCCATTAACAAA+TGG | 0.453252 | 8_1:-64042743 | None:intergenic |
ATGTTGATGGAAGAAGCTTT+TGG | 0.456514 | 8_1:+64041976 | Msa1206870:CDS |
GTTAATGGAGATAATTGAAT+CGG | 0.460264 | 8_1:+64042749 | Msa1206870:CDS |
TTGCTTAATCGTATAGCTCC+GGG | 0.462605 | 8_1:-64043234 | None:intergenic |
CTCAGGAAAACGACAACCAT+TGG | 0.462642 | 8_1:+64041435 | Msa1206870:CDS |
GAAACTCCAAGCGCAACAGC+GGG | 0.464068 | 8_1:+64040860 | Msa1206870:CDS |
TTGGAGAGTCCTCCAACAAA+TGG | 0.464964 | 8_1:+64041897 | Msa1206870:CDS |
TTTGCTTAATCGTATAGCTC+CGG | 0.467808 | 8_1:-64043235 | None:intergenic |
GCCACCGAAATGCGTTTGTA+TGG | 0.477551 | 8_1:-64041103 | None:intergenic |
TTCCACATTTCAACAGTTTG+TGG | 0.481433 | 8_1:-64043135 | None:intergenic |
TTCGAAGTCTTGAAGTTGAA+AGG | 0.481443 | 8_1:+64043094 | Msa1206870:CDS |
TGAAGATGGCATATACTTTG+AGG | 0.486004 | 8_1:+64040489 | None:intergenic |
AGAAACTCCAAGCGCAACAG+CGG | 0.487445 | 8_1:+64040859 | Msa1206870:CDS |
CCGAGGTGCGTTACCATGAT+GGG | 0.489289 | 8_1:+64040969 | Msa1206870:CDS |
GAATCCAAAATAATATCAAT+GGG | 0.493433 | 8_1:+64041860 | Msa1206870:CDS |
ACCGAGGTGCGTTACCATGA+TGG | 0.496123 | 8_1:+64040968 | Msa1206870:CDS |
TAGCTCCGGGGAACATCAAA+AGG | 0.501144 | 8_1:-64043221 | None:intergenic |
ATGATAACAGACACACATAC+TGG | 0.502452 | 8_1:+64042000 | Msa1206870:CDS |
TGGAAAAGGAGAAGATGAAG+GGG | 0.508556 | 8_1:+64041243 | Msa1206870:CDS |
TCCGGAAACGAGTATTAATC+CGG | 0.511461 | 8_1:+64040739 | Msa1206870:CDS |
GAAGATGGCATATACTTTGA+GGG | 0.519625 | 8_1:+64040490 | None:intergenic |
CTGTTCCGTAAGTTGTAAAG+AGG | 0.526026 | 8_1:+64041718 | Msa1206870:CDS |
TGTGGAAAAGGAGAAGATGA+AGG | 0.530192 | 8_1:+64041241 | Msa1206870:CDS |
TCCGGAACAAAGTTTGCCAA+TGG | 0.531404 | 8_1:+64040757 | Msa1206870:CDS |
AAGATTGATGAGAAATTGAA+GGG | 0.532048 | 8_1:+64041829 | Msa1206870:intron |
AGCACAAGAACGGTGATAAG+TGG | 0.533107 | 8_1:-64041293 | None:intergenic |
GAAAGTGAGTCAAATATTGA+AGG | 0.536289 | 8_1:+64040557 | Msa1206870:CDS |
GTCGCAACAGCTACATAAGA+TGG | 0.537125 | 8_1:-64041026 | None:intergenic |
GGCTCCATTGAAAATTCGAC+CGG | 0.537301 | 8_1:-64041005 | None:intergenic |
GATGATGGAACTGTTTCCAT+TGG | 0.538815 | 8_1:-64040773 | None:intergenic |
AACTGAAACACCTCCATCAT+CGG | 0.540100 | 8_1:+64040694 | Msa1206870:CDS |
AGTTGTCAACCATGCTAGGA+TGG | 0.543516 | 8_1:-64040924 | None:intergenic |
CTTGACTCTACAGATTTCAT+GGG | 0.545472 | 8_1:+64042658 | Msa1206870:intron |
GACCGTCGACCTCGTCGACC+TGG | 0.547724 | 8_1:-64040602 | None:intergenic |
CTGTAAGGGTGATGATGAAG+AGG | 0.550087 | 8_1:+64041484 | Msa1206870:CDS |
ACTTGCAAGGAAATTGATGA+AGG | 0.553512 | 8_1:+64040944 | Msa1206870:CDS |
GCCTCATCTGTGGCAATGAA+AGG | 0.555749 | 8_1:-64042699 | None:intergenic |
TGCAAGTTGTCAACCATGCT+AGG | 0.558541 | 8_1:-64040928 | None:intergenic |
GCCTTTCATTGCCACAGATG+AGG | 0.563244 | 8_1:+64042698 | Msa1206870:CDS |
CCCATCATGGTAACGCACCT+CGG | 0.563559 | 8_1:-64040969 | None:intergenic |
GATTAGTAAATGGTTGAAAG+AGG | 0.563585 | 8_1:+64041156 | Msa1206870:CDS |
AAACAAACAATGTCATGTAT+GGG | 0.563802 | 8_1:-64041214 | None:intergenic |
TTATGTAATAAGCAATTCAA+AGG | 0.566767 | 8_1:+64041939 | Msa1206870:CDS |
ACGCACAAGACCAAATTATG+TGG | 0.574274 | 8_1:+64040514 | Msa1206870:CDS |
ATAATATCAATGGGAATGAG+AGG | 0.575607 | 8_1:+64041869 | Msa1206870:CDS |
AGTTTGTGGATTAGATGGAA+TGG | 0.581324 | 8_1:-64043121 | None:intergenic |
GCCTCTGTATGCCTCATCTG+TGG | 0.584277 | 8_1:-64042709 | None:intergenic |
ATCCACAAACTGTTGAAATG+TGG | 0.588515 | 8_1:+64043133 | Msa1206870:CDS |
GCGACGAGGAAATCTCTGTA+TGG | 0.591878 | 8_1:+64041044 | Msa1206870:CDS |
GTGGAAAAGGAGAAGATGAA+GGG | 0.593089 | 8_1:+64041242 | Msa1206870:CDS |
TGAAGGGTTAGAAGCAAACT+GGG | 0.594789 | 8_1:+64040574 | Msa1206870:CDS |
AAAGTGAGTCAAATATTGAA+GGG | 0.601009 | 8_1:+64040558 | Msa1206870:CDS |
ACCATACAAACGCATTTCGG+TGG | 0.602664 | 8_1:+64041102 | Msa1206870:CDS |
AATACTCGTTTCCGGAACAA+TGG | 0.603556 | 8_1:-64040732 | None:intergenic |
TAATTGCTGCAGCTACCGTA+AGG | 0.611328 | 8_1:+64042486 | Msa1206870:CDS |
TGCTTAGATCAAATCTGAGG+AGG | 0.617602 | 8_1:+64042414 | Msa1206870:intron |
CCTGTATAAAAGCACAAGAA+CGG | 0.617850 | 8_1:-64041303 | None:intergenic |
ACAAGAACGGTGATAAGTGG+AGG | 0.625049 | 8_1:-64041290 | None:intergenic |
AGCATGGTTGACAACTTGCA+AGG | 0.627667 | 8_1:+64040931 | Msa1206870:CDS |
TGCAAGTGCAAATACTGTAA+GGG | 0.630487 | 8_1:+64041470 | Msa1206870:CDS |
ATTTCATTCACCGATGATGG+AGG | 0.630618 | 8_1:-64040704 | None:intergenic |
AACCAGGTCGACGAGGTCGA+CGG | 0.633162 | 8_1:+64040600 | Msa1206870:CDS |
TGCAGTAAGAACATAACCAA+TGG | 0.637831 | 8_1:-64041451 | None:intergenic |
AATTGCTTAGATCAAATCTG+AGG | 0.638264 | 8_1:+64042411 | Msa1206870:intron |
AACGCATTTCGGTGGCAAAG+CGG | 0.641653 | 8_1:+64041110 | Msa1206870:CDS |
CGAGGTGCGTTACCATGATG+GGG | 0.652213 | 8_1:+64040970 | Msa1206870:CDS |
CTTGCAAGGAAATTGATGAA+GGG | 0.653849 | 8_1:+64040945 | Msa1206870:CDS |
ACAAATGGATACGAAAAGTG+AGG | 0.660093 | 8_1:+64041912 | Msa1206870:CDS |
TTAGGCTCAACATCCCCGAA+TGG | 0.660828 | 8_1:-64043282 | None:intergenic |
CACACATACTGGCGTCAATG+TGG | 0.663750 | 8_1:+64042011 | Msa1206870:CDS |
CTTATGTAGCTGTTGCGACG+AGG | 0.663870 | 8_1:+64041030 | Msa1206870:CDS |
GGAAAAGGAGAAGATGAAGG+GGG | 0.669030 | 8_1:+64041244 | Msa1206870:CDS |
CAAGAACGGTGATAAGTGGA+GGG | 0.669312 | 8_1:-64041289 | None:intergenic |
GCCACAGATGAGGCATACAG+AGG | 0.671197 | 8_1:+64042708 | Msa1206870:CDS |
AGAGTGTTCTATACAACCGC+AGG | 0.671533 | 8_1:+64042037 | Msa1206870:CDS |
TGCTTAATCGTATAGCTCCG+GGG | 0.678737 | 8_1:-64043233 | None:intergenic |
GGAAATTGATGAAGGGACCG+AGG | 0.685280 | 8_1:+64040952 | Msa1206870:CDS |
GGACTTGAATGAGCCATTCG+GGG | 0.695242 | 8_1:+64043269 | Msa1206870:CDS |
AAACTCCAAGCGCAACAGCG+GGG | 0.743032 | 8_1:+64040861 | Msa1206870:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTATAATGTTTTATTTC+TGG | - | chr8_1:64040902-64040921 | None:intergenic | 10.0% |
!!! | CTTGAAATTTTATTTTTTTT+GGG | - | chr8_1:64042373-64042392 | None:intergenic | 10.0% |
!!! | AAGATTTGAATTTGAAATAT+CGG | - | chr8_1:64041574-64041593 | None:intergenic | 15.0% |
!!! | GCTTGAAATTTTATTTTTTT+TGG | - | chr8_1:64042374-64042393 | None:intergenic | 15.0% |
!!! | AATAATTTGTTATTTCTTCA+CGG | + | chr8_1:64042575-64042594 | Msa1206870:intron | 15.0% |
!!! | AATTTAATTCACTTGTTTTA+AGG | + | chr8_1:64043007-64043026 | Msa1206870:intron | 15.0% |
!!! | AGTTTACAAAATGATTTTGT+AGG | + | chr8_1:64041647-64041666 | Msa1206870:intron | 20.0% |
!!! | AATCTTTCACAGTTTTTTTT+AGG | - | chr8_1:64041685-64041704 | None:intergenic | 20.0% |
!! | AAACTGTGAAAGATTTATTA+AGG | + | chr8_1:64041690-64041709 | Msa1206870:CDS | 20.0% |
!! | AATCAAATACATGATATTTG+TGG | + | chr8_1:64041790-64041809 | Msa1206870:intron | 20.0% |
!! | ATCAAATACATGATATTTGT+GGG | + | chr8_1:64041791-64041810 | Msa1206870:intron | 20.0% |
!! | GAATCCAAAATAATATCAAT+GGG | + | chr8_1:64041860-64041879 | Msa1206870:CDS | 20.0% |
!! | TTATGTAATAAGCAATTCAA+AGG | + | chr8_1:64041939-64041958 | Msa1206870:CDS | 20.0% |
!! | TGGTAAAAAATATATTTGGT+TGG | - | chr8_1:64042122-64042141 | None:intergenic | 20.0% |
!!! | ACTTTAGATTAAAAGAGTAT+CGG | + | chr8_1:64042177-64042196 | Msa1206870:intron | 20.0% |
!!! | CTTTTTCAACTATTTTGTTT+TGG | + | chr8_1:64042534-64042553 | Msa1206870:intron | 20.0% |
!!! | ATAATTTGTTATTTCTTCAC+GGG | + | chr8_1:64042576-64042595 | Msa1206870:intron | 20.0% |
! | TCACTTATTTCCACATAATT+TGG | - | chr8_1:64040527-64040546 | None:intergenic | 25.0% |
! | AAAGTGAGTCAAATATTGAA+GGG | + | chr8_1:64040558-64040577 | Msa1206870:CDS | 25.0% |
!! | ATTTACTAATCAGGATGTTT+TGG | - | chr8_1:64041147-64041166 | None:intergenic | 25.0% |
! | AAAACATCCTGATTAGTAAA+TGG | + | chr8_1:64041146-64041165 | Msa1206870:CDS | 25.0% |
! | AAACAAACAATGTCATGTAT+GGG | - | chr8_1:64041217-64041236 | None:intergenic | 25.0% |
! | TAAACAAACAATGTCATGTA+TGG | - | chr8_1:64041218-64041237 | None:intergenic | 25.0% |
!! | TTTTTCTTTTGCTTACATGA+AGG | + | chr8_1:64041346-64041365 | Msa1206870:intron | 25.0% |
!! | TTTTCTTTTGCTTACATGAA+GGG | + | chr8_1:64041347-64041366 | Msa1206870:intron | 25.0% |
!!! | TCTTTTCATTTTTATACTGC+AGG | + | chr8_1:64041406-64041425 | Msa1206870:intron | 25.0% |
!!! | CTTTTCATTTTTATACTGCA+GGG | + | chr8_1:64041407-64041426 | Msa1206870:intron | 25.0% |
!! | AAAATGATTTTGTAGGTCAT+TGG | + | chr8_1:64041654-64041673 | Msa1206870:intron | 25.0% |
!!! | TATGCATTCATTTTTTTCTG+TGG | + | chr8_1:64041741-64041760 | Msa1206870:intron | 25.0% |
! | AAAGATTGATGAGAAATTGA+AGG | + | chr8_1:64041828-64041847 | Msa1206870:intron | 25.0% |
! | AAGATTGATGAGAAATTGAA+GGG | + | chr8_1:64041829-64041848 | Msa1206870:intron | 25.0% |
! | GGAATCCAAAATAATATCAA+TGG | + | chr8_1:64041859-64041878 | Msa1206870:CDS | 25.0% |
!! | CATTCCCATTGATATTATTT+TGG | - | chr8_1:64041867-64041886 | None:intergenic | 25.0% |
!! | AAAAATATATTTGGTTGGTG+CGG | - | chr8_1:64042117-64042136 | None:intergenic | 25.0% |
! | GCAGTGGTAAAAAATATATT+TGG | - | chr8_1:64042126-64042145 | None:intergenic | 25.0% |
!! | TAATCTAAAGTGTCATTACA+TGG | - | chr8_1:64042168-64042187 | None:intergenic | 25.0% |
!!! | CTTTAGATTAAAAGAGTATC+GGG | + | chr8_1:64042178-64042197 | Msa1206870:intron | 25.0% |
! | AGATTTGATCTAAGCAATTA+AGG | - | chr8_1:64042410-64042429 | None:intergenic | 25.0% |
!!! | GTTGAAAAAGTATCAACAAT+TGG | - | chr8_1:64042524-64042543 | None:intergenic | 25.0% |
!!! | CAACTATTTTGTTTTGGTTA+TGG | + | chr8_1:64042540-64042559 | Msa1206870:intron | 25.0% |
! | CAATTATCTCCATTAACAAA+TGG | - | chr8_1:64042746-64042765 | None:intergenic | 25.0% |
! | GTTAATGGAGATAATTGAAT+CGG | + | chr8_1:64042749-64042768 | Msa1206870:CDS | 25.0% |
!!! | TGCATATCACATTTTGAAAA+TGG | - | chr8_1:64042843-64042862 | None:intergenic | 25.0% |
! | AATTAAGTTCAATGGAAAAG+TGG | - | chr8_1:64042958-64042977 | None:intergenic | 25.0% |
! | ATGAATGCAATTAAGTTCAA+TGG | - | chr8_1:64042966-64042985 | None:intergenic | 25.0% |
! | CAAAAAGTTGAAGAAAGATA+TGG | + | chr8_1:64043188-64043207 | Msa1206870:CDS | 25.0% |
GAAAGTGAGTCAAATATTGA+AGG | + | chr8_1:64040557-64040576 | Msa1206870:CDS | 30.0% | |
! | AAATTACCTATTTCAGGTCT+TGG | - | chr8_1:64040641-64040660 | None:intergenic | 30.0% |
ACCTGAAATAGGTAATTTCT+GGG | + | chr8_1:64040643-64040662 | Msa1206870:CDS | 30.0% | |
TCAACAAACAAGTCATAATC+TGG | + | chr8_1:64040817-64040836 | Msa1206870:CDS | 30.0% | |
ATAAAAAAACCATCCTAGCA+TGG | + | chr8_1:64040915-64040934 | Msa1206870:CDS | 30.0% | |
CTTTCAACCATTTACTAATC+AGG | - | chr8_1:64041156-64041175 | None:intergenic | 30.0% | |
GATTAGTAAATGGTTGAAAG+AGG | + | chr8_1:64041156-64041175 | Msa1206870:CDS | 30.0% | |
!! | GACATTGTTTGTTTAGTTTG+TGG | + | chr8_1:64041223-64041242 | Msa1206870:CDS | 30.0% |
!! | GTTTGTTTAGTTTGTGGAAA+AGG | + | chr8_1:64041229-64041248 | Msa1206870:CDS | 30.0% |
AGTTATGGTCATGAAAACAA+AGG | - | chr8_1:64041618-64041637 | None:intergenic | 30.0% | |
TAAACTACTTCAGAGAGTTA+TGG | - | chr8_1:64041633-64041652 | None:intergenic | 30.0% | |
ATAATATCAATGGGAATGAG+AGG | + | chr8_1:64041869-64041888 | Msa1206870:CDS | 30.0% | |
AATTGCTTAGATCAAATCTG+AGG | + | chr8_1:64042411-64042430 | Msa1206870:intron | 30.0% | |
AAGTATCAACAATTGGAAAG+AGG | - | chr8_1:64042517-64042536 | None:intergenic | 30.0% | |
! | ACGAATTTGCCATTTGTTAA+TGG | + | chr8_1:64042734-64042753 | Msa1206870:CDS | 30.0% |
ATACAACATGCATGAGATAT+AGG | - | chr8_1:64042792-64042811 | None:intergenic | 30.0% | |
GCAAAAATATAACTTCAGTG+AGG | + | chr8_1:64043158-64043177 | Msa1206870:CDS | 30.0% | |
ATTAAGCAAAAGACTTCTAC+TGG | + | chr8_1:64043248-64043267 | Msa1206870:CDS | 30.0% | |
GACCTGAAATAGGTAATTTC+TGG | + | chr8_1:64040642-64040661 | Msa1206870:CDS | 35.0% | |
TCCCAGAAATTACCTATTTC+AGG | - | chr8_1:64040647-64040666 | None:intergenic | 35.0% | |
TGAAATAGCTACCATTGTTC+CGG | + | chr8_1:64040721-64040740 | Msa1206870:CDS | 35.0% | |
CTTGTTTCGTTCATTGATGA+TGG | - | chr8_1:64040791-64040810 | None:intergenic | 35.0% | |
ACTTGCAAGGAAATTGATGA+AGG | + | chr8_1:64040944-64040963 | Msa1206870:CDS | 35.0% | |
CTTGCAAGGAAATTGATGAA+GGG | + | chr8_1:64040945-64040964 | Msa1206870:CDS | 35.0% | |
TTGAAAATTCGACCGGTTAT+CGG | - | chr8_1:64041001-64041020 | None:intergenic | 35.0% | |
! | ATAACCGGTCGAATTTTCAA+TGG | + | chr8_1:64041001-64041020 | Msa1206870:CDS | 35.0% |
!! | TACTAATCAGGATGTTTTGG+AGG | - | chr8_1:64041144-64041163 | None:intergenic | 35.0% |
AAGAGGATGAACAAAAACGT+CGG | + | chr8_1:64041173-64041192 | Msa1206870:CDS | 35.0% | |
! | CCTGTATAAAAGCACAAGAA+CGG | - | chr8_1:64041306-64041325 | None:intergenic | 35.0% |
TGCAGTAAGAACATAACCAA+TGG | - | chr8_1:64041454-64041473 | None:intergenic | 35.0% | |
TGCAAGTGCAAATACTGTAA+GGG | + | chr8_1:64041470-64041489 | Msa1206870:CDS | 35.0% | |
TTGAAATATCGGATGATGAC+CGG | - | chr8_1:64041563-64041582 | None:intergenic | 35.0% | |
TATGGTCATGAAAACAAAGG+AGG | - | chr8_1:64041615-64041634 | None:intergenic | 35.0% | |
GCATACCTCTTTACAACTTA+CGG | - | chr8_1:64041726-64041745 | None:intergenic | 35.0% | |
GAGAAATTGAAGGGATCAAT+CGG | + | chr8_1:64041838-64041857 | Msa1206870:CDS | 35.0% | |
!! | TTTTCGTATCCATTTGTTGG+AGG | - | chr8_1:64041909-64041928 | None:intergenic | 35.0% |
! | CACTTTTCGTATCCATTTGT+TGG | - | chr8_1:64041912-64041931 | None:intergenic | 35.0% |
ACAAATGGATACGAAAAGTG+AGG | + | chr8_1:64041912-64041931 | Msa1206870:CDS | 35.0% | |
!! | ATGTTGATGGAAGAAGCTTT+TGG | + | chr8_1:64041976-64041995 | Msa1206870:CDS | 35.0% |
!! | TGTTGATGGAAGAAGCTTTT+GGG | + | chr8_1:64041977-64041996 | Msa1206870:CDS | 35.0% |
ATGATAACAGACACACATAC+TGG | + | chr8_1:64042000-64042019 | Msa1206870:CDS | 35.0% | |
!! | AATTAAGAAGTGCTTACCTG+CGG | - | chr8_1:64042056-64042075 | None:intergenic | 35.0% |
ATAGTGAGTGATAAATGCAG+TGG | - | chr8_1:64042142-64042161 | None:intergenic | 35.0% | |
CTTGACTCTACAGATTTCAT+GGG | + | chr8_1:64042658-64042677 | Msa1206870:intron | 35.0% | |
ACATATCTCTCTCTTCTACA+AGG | - | chr8_1:64042921-64042940 | None:intergenic | 35.0% | |
AAGTTCAATGGAAAAGTGGA+AGG | - | chr8_1:64042954-64042973 | None:intergenic | 35.0% | |
TTCGAAGTCTTGAAGTTGAA+AGG | + | chr8_1:64043094-64043113 | Msa1206870:CDS | 35.0% | |
!! | AGTTTGTGGATTAGATGGAA+TGG | - | chr8_1:64043124-64043143 | None:intergenic | 35.0% |
!! | TCAACAGTTTGTGGATTAGA+TGG | - | chr8_1:64043129-64043148 | None:intergenic | 35.0% |
ATCCACAAACTGTTGAAATG+TGG | + | chr8_1:64043133-64043152 | Msa1206870:CDS | 35.0% | |
TTCCACATTTCAACAGTTTG+TGG | - | chr8_1:64043138-64043157 | None:intergenic | 35.0% | |
! | TATAACCTTTTGATGTTCCC+CGG | + | chr8_1:64043216-64043235 | Msa1206870:CDS | 35.0% |
TTTGCTTAATCGTATAGCTC+CGG | - | chr8_1:64043238-64043257 | None:intergenic | 35.0% | |
ACGCACAAGACCAAATTATG+TGG | + | chr8_1:64040514-64040533 | Msa1206870:CDS | 40.0% | |
TTGAAGGGTTAGAAGCAAAC+TGG | + | chr8_1:64040573-64040592 | Msa1206870:CDS | 40.0% | |
TGAAGGGTTAGAAGCAAACT+GGG | + | chr8_1:64040574-64040593 | Msa1206870:CDS | 40.0% | |
AACTGAAACACCTCCATCAT+CGG | + | chr8_1:64040694-64040713 | Msa1206870:CDS | 40.0% | |
! | ATTTCATTCACCGATGATGG+AGG | - | chr8_1:64040707-64040726 | None:intergenic | 40.0% |
! | GCTATTTCATTCACCGATGA+TGG | - | chr8_1:64040710-64040729 | None:intergenic | 40.0% |
AATACTCGTTTCCGGAACAA+TGG | - | chr8_1:64040735-64040754 | None:intergenic | 40.0% | |
TCCGGAAACGAGTATTAATC+CGG | + | chr8_1:64040739-64040758 | Msa1206870:CDS | 40.0% | |
TCCGGATTAATACTCGTTTC+CGG | - | chr8_1:64040743-64040762 | None:intergenic | 40.0% | |
TCCATTGGCAAACTTTGTTC+CGG | - | chr8_1:64040761-64040780 | None:intergenic | 40.0% | |
!! | GATGATGGAACTGTTTCCAT+TGG | - | chr8_1:64040776-64040795 | None:intergenic | 40.0% |
!!! | TTATCGGTTTTTCCCCATCA+TGG | - | chr8_1:64040985-64041004 | None:intergenic | 40.0% |
GCAACCATACAAACGCATTT+CGG | + | chr8_1:64041099-64041118 | Msa1206870:CDS | 40.0% | |
!!! | AATCAGGATGTTTTGGAGGA+AGG | - | chr8_1:64041140-64041159 | None:intergenic | 40.0% |
AGAGGATGAACAAAAACGTC+GGG | + | chr8_1:64041174-64041193 | Msa1206870:CDS | 40.0% | |
TGTGGAAAAGGAGAAGATGA+AGG | + | chr8_1:64041241-64041260 | Msa1206870:CDS | 40.0% | |
GTGGAAAAGGAGAAGATGAA+GGG | + | chr8_1:64041242-64041261 | Msa1206870:CDS | 40.0% | |
TGGAAAAGGAGAAGATGAAG+GGG | + | chr8_1:64041243-64041262 | Msa1206870:CDS | 40.0% | |
! | CCGTTCTTGTGCTTTTATAC+AGG | + | chr8_1:64041303-64041322 | Msa1206870:CDS | 40.0% |
! | TATACTGCAGGGTTTTTCTC+AGG | + | chr8_1:64041418-64041437 | Msa1206870:intron | 40.0% |
CTGCAAGTGCAAATACTGTA+AGG | + | chr8_1:64041469-64041488 | Msa1206870:CDS | 40.0% | |
! | ACTTACACTGCTTGTTGCAT+TGG | - | chr8_1:64041535-64041554 | None:intergenic | 40.0% |
! | CAAGCAGTGTAAGTTTTCTC+CGG | + | chr8_1:64041541-64041560 | Msa1206870:intron | 40.0% |
TCATGAAAACAAAGGAGGTG+AGG | - | chr8_1:64041610-64041629 | None:intergenic | 40.0% | |
CTGTTCCGTAAGTTGTAAAG+AGG | + | chr8_1:64041718-64041737 | Msa1206870:CDS | 40.0% | |
!! | ATGGGAATGAGAGGTATTCT+TGG | + | chr8_1:64041878-64041897 | Msa1206870:CDS | 40.0% |
GTTGTATTGTACCTCCACTT+TGG | - | chr8_1:64042210-64042229 | None:intergenic | 40.0% | |
TGCTTAGATCAAATCTGAGG+AGG | + | chr8_1:64042414-64042433 | Msa1206870:intron | 40.0% | |
TGGAAAGAGGACATACCTTA+CGG | - | chr8_1:64042504-64042523 | None:intergenic | 40.0% | |
CCATGAAATCTGTAGAGTCA+AGG | - | chr8_1:64042660-64042679 | None:intergenic | 40.0% | |
CCTTGACTCTACAGATTTCA+TGG | + | chr8_1:64042657-64042676 | Msa1206870:intron | 40.0% | |
!! | CTCTTCTACAAGGAGTGTTA+TGG | - | chr8_1:64042911-64042930 | None:intergenic | 40.0% |
TTGCTTAATCGTATAGCTCC+GGG | - | chr8_1:64043237-64043256 | None:intergenic | 40.0% | |
GAAGCAAACTGGGAAAAACC+AGG | + | chr8_1:64040584-64040603 | Msa1206870:CDS | 45.0% | |
CGTAGACCAAGACCTGAAAT+AGG | + | chr8_1:64040632-64040651 | Msa1206870:CDS | 45.0% | |
TCCGGAACAAAGTTTGCCAA+TGG | + | chr8_1:64040757-64040776 | Msa1206870:CDS | 45.0% | |
AGTTGTCAACCATGCTAGGA+TGG | - | chr8_1:64040927-64040946 | None:intergenic | 45.0% | |
TGCAAGTTGTCAACCATGCT+AGG | - | chr8_1:64040931-64040950 | None:intergenic | 45.0% | |
AGCATGGTTGACAACTTGCA+AGG | + | chr8_1:64040931-64040950 | Msa1206870:CDS | 45.0% | |
GATGGGGAAAAACCGATAAC+CGG | + | chr8_1:64040986-64041005 | Msa1206870:CDS | 45.0% | |
GGCTCCATTGAAAATTCGAC+CGG | - | chr8_1:64041008-64041027 | None:intergenic | 45.0% | |
GTCGCAACAGCTACATAAGA+TGG | - | chr8_1:64041029-64041048 | None:intergenic | 45.0% | |
ACCATACAAACGCATTTCGG+TGG | + | chr8_1:64041102-64041121 | Msa1206870:CDS | 45.0% | |
GGAAAAGGAGAAGATGAAGG+GGG | + | chr8_1:64041244-64041263 | Msa1206870:CDS | 45.0% | |
CAAGAACGGTGATAAGTGGA+GGG | - | chr8_1:64041292-64041311 | None:intergenic | 45.0% | |
ACAAGAACGGTGATAAGTGG+AGG | - | chr8_1:64041293-64041312 | None:intergenic | 45.0% | |
AGCACAAGAACGGTGATAAG+TGG | - | chr8_1:64041296-64041315 | None:intergenic | 45.0% | |
CTCAGGAAAACGACAACCAT+TGG | + | chr8_1:64041435-64041454 | Msa1206870:CDS | 45.0% | |
! | CTGTAAGGGTGATGATGAAG+AGG | + | chr8_1:64041484-64041503 | Msa1206870:CDS | 45.0% |
! | TACACTGCTTGTTGCATTGG+CGG | - | chr8_1:64041532-64041551 | None:intergenic | 45.0% |
TGAAAACAAAGGAGGTGAGG+TGG | - | chr8_1:64041607-64041626 | None:intergenic | 45.0% | |
TTGGAGAGTCCTCCAACAAA+TGG | + | chr8_1:64041897-64041916 | Msa1206870:CDS | 45.0% | |
! | AGAGTGTTCTATACAACCGC+AGG | + | chr8_1:64042037-64042056 | Msa1206870:CDS | 45.0% |
! | TATATTTGGTTGGTGCGGTG+CGG | - | chr8_1:64042112-64042131 | None:intergenic | 45.0% |
TAATTGCTGCAGCTACCGTA+AGG | + | chr8_1:64042486-64042505 | Msa1206870:CDS | 45.0% | |
TGCTTAATCGTATAGCTCCG+GGG | - | chr8_1:64043236-64043255 | None:intergenic | 45.0% | |
CTGGACTTGAATGAGCCATT+CGG | + | chr8_1:64043267-64043286 | Msa1206870:CDS | 45.0% | |
TGGACTTGAATGAGCCATTC+GGG | + | chr8_1:64043268-64043287 | Msa1206870:CDS | 45.0% | |
AGAAACTCCAAGCGCAACAG+CGG | + | chr8_1:64040859-64040878 | Msa1206870:CDS | 50.0% | |
GGAAATTGATGAAGGGACCG+AGG | + | chr8_1:64040952-64040971 | Msa1206870:CDS | 50.0% | |
CTTATGTAGCTGTTGCGACG+AGG | + | chr8_1:64041030-64041049 | Msa1206870:CDS | 50.0% | |
GCGACGAGGAAATCTCTGTA+TGG | + | chr8_1:64041044-64041063 | Msa1206870:CDS | 50.0% | |
GCCACCGAAATGCGTTTGTA+TGG | - | chr8_1:64041106-64041125 | None:intergenic | 50.0% | |
AACGCATTTCGGTGGCAAAG+CGG | + | chr8_1:64041110-64041129 | Msa1206870:CDS | 50.0% | |
TGGCGGCACATGATGTCTAA+AGG | - | chr8_1:64041515-64041534 | None:intergenic | 50.0% | |
TGCAGCTGCTTGCATGTTGA+TGG | + | chr8_1:64041963-64041982 | Msa1206870:CDS | 50.0% | |
CACACATACTGGCGTCAATG+TGG | + | chr8_1:64042011-64042030 | Msa1206870:CDS | 50.0% | |
GTATCGGGTGTCTACCAAAG+TGG | + | chr8_1:64042193-64042212 | Msa1206870:intron | 50.0% | |
GCCTTTCATTGCCACAGATG+AGG | + | chr8_1:64042698-64042717 | Msa1206870:CDS | 50.0% | |
GCCTCATCTGTGGCAATGAA+AGG | - | chr8_1:64042702-64042721 | None:intergenic | 50.0% | |
TAGCTCCGGGGAACATCAAA+AGG | - | chr8_1:64043224-64043243 | None:intergenic | 50.0% | |
GGACTTGAATGAGCCATTCG+GGG | + | chr8_1:64043269-64043288 | Msa1206870:CDS | 50.0% | |
TTAGGCTCAACATCCCCGAA+TGG | - | chr8_1:64043285-64043304 | None:intergenic | 50.0% | |
TGGGAAAAACCAGGTCGACG+AGG | + | chr8_1:64040593-64040612 | Msa1206870:CDS | 55.0% | |
GAAACTCCAAGCGCAACAGC+GGG | + | chr8_1:64040860-64040879 | Msa1206870:CDS | 55.0% | |
AAACTCCAAGCGCAACAGCG+GGG | + | chr8_1:64040861-64040880 | Msa1206870:CDS | 55.0% | |
ACCGAGGTGCGTTACCATGA+TGG | + | chr8_1:64040968-64040987 | Msa1206870:CDS | 55.0% | |
! | CCCATCATGGTAACGCACCT+CGG | - | chr8_1:64040972-64040991 | None:intergenic | 55.0% |
CCGAGGTGCGTTACCATGAT+GGG | + | chr8_1:64040969-64040988 | Msa1206870:CDS | 55.0% | |
CGAGGTGCGTTACCATGATG+GGG | + | chr8_1:64040970-64040989 | Msa1206870:CDS | 55.0% | |
GGAGGTGAGGTGGATGAGTA+GGG | - | chr8_1:64041597-64041616 | None:intergenic | 55.0% | |
AGGAGGTGAGGTGGATGAGT+AGG | - | chr8_1:64041598-64041617 | None:intergenic | 55.0% | |
TCGGGTGTCTACCAAAGTGG+AGG | + | chr8_1:64042196-64042215 | Msa1206870:intron | 55.0% | |
GCCACAGATGAGGCATACAG+AGG | + | chr8_1:64042708-64042727 | Msa1206870:CDS | 55.0% | |
GCCTCTGTATGCCTCATCTG+TGG | - | chr8_1:64042712-64042731 | None:intergenic | 55.0% | |
AACCAGGTCGACGAGGTCGA+CGG | + | chr8_1:64040600-64040619 | Msa1206870:CDS | 60.0% | |
GAAGTCCCCGCTGTTGCGCT+TGG | - | chr8_1:64040869-64040888 | None:intergenic | 65.0% | |
GACCGTCGACCTCGTCGACC+TGG | - | chr8_1:64040605-64040624 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_1 | gene | 64040494 | 64043317 | 64040494 | ID=Msa1206870;Name=Msa1206870 |
chr8_1 | mRNA | 64040494 | 64043317 | 64040494 | ID=Msa1206870-mRNA-1;Parent=Msa1206870;Name=Msa1206870-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|1|1|7|0|554 |
chr8_1 | exon | 64040494 | 64041324 | 64040494 | ID=Msa1206870-mRNA-1:exon:20887;Parent=Msa1206870-mRNA-1 |
chr8_1 | exon | 64041428 | 64041548 | 64041428 | ID=Msa1206870-mRNA-1:exon:20888;Parent=Msa1206870-mRNA-1 |
chr8_1 | exon | 64041669 | 64041739 | 64041669 | ID=Msa1206870-mRNA-1:exon:20889;Parent=Msa1206870-mRNA-1 |
chr8_1 | exon | 64041832 | 64042058 | 64041832 | ID=Msa1206870-mRNA-1:exon:20890;Parent=Msa1206870-mRNA-1 |
chr8_1 | exon | 64042421 | 64042507 | 64042421 | ID=Msa1206870-mRNA-1:exon:20891;Parent=Msa1206870-mRNA-1 |
chr8_1 | exon | 64042671 | 64042770 | 64042671 | ID=Msa1206870-mRNA-1:exon:20892;Parent=Msa1206870-mRNA-1 |
chr8_1 | exon | 64043090 | 64043317 | 64043090 | ID=Msa1206870-mRNA-1:exon:20893;Parent=Msa1206870-mRNA-1 |
chr8_1 | CDS | 64040494 | 64041324 | 64040494 | ID=Msa1206870-mRNA-1:cds;Parent=Msa1206870-mRNA-1 |
chr8_1 | CDS | 64041428 | 64041548 | 64041428 | ID=Msa1206870-mRNA-1:cds;Parent=Msa1206870-mRNA-1 |
chr8_1 | CDS | 64041669 | 64041739 | 64041669 | ID=Msa1206870-mRNA-1:cds;Parent=Msa1206870-mRNA-1 |
chr8_1 | CDS | 64041832 | 64042058 | 64041832 | ID=Msa1206870-mRNA-1:cds;Parent=Msa1206870-mRNA-1 |
chr8_1 | CDS | 64042421 | 64042507 | 64042421 | ID=Msa1206870-mRNA-1:cds;Parent=Msa1206870-mRNA-1 |
chr8_1 | CDS | 64042671 | 64042770 | 64042671 | ID=Msa1206870-mRNA-1:cds;Parent=Msa1206870-mRNA-1 |
chr8_1 | CDS | 64043090 | 64043317 | 64043090 | ID=Msa1206870-mRNA-1:cds;Parent=Msa1206870-mRNA-1 |
Gene Sequence |
Protein sequence |