AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1209080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1209080 MtrunA17_Chr4g0069721 96.629 178 6 0 1 178 1 178 3.54e-126 352
Msa1209080 MtrunA17_Chr2g0302041 56.463 147 59 3 25 168 38 182 5.96e-47 152
Msa1209080 MtrunA17_Chr5g0399851 34.848 132 69 2 41 168 17 135 8.30e-18 75.9
Msa1209080 MtrunA17_Chr5g0399861 30.328 122 70 2 41 162 40 146 9.07e-13 63.2
Msa1209080 MtrunA17_Chr5g0399881 30.081 123 71 2 41 163 40 147 9.06e-12 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1209080 AT5G20900.1 40.000 120 66 4 45 162 57 172 3.29e-18 78.2
Msa1209080 AT3G43440.1 35.833 120 59 3 44 163 130 231 7.98e-16 72.8
Msa1209080 AT3G43440.2 32.824 131 67 4 42 172 42 151 2.84e-15 69.7
Msa1209080 AT1G19180.2 34.234 111 65 1 43 153 58 160 7.40e-12 61.2
Msa1209080 AT1G19180.1 34.234 111 65 1 43 153 124 226 2.42e-11 60.8
Msa1209080 AT1G19180.3 34.234 111 65 1 43 153 124 226 2.42e-11 60.8

Find 70 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTCAAGTGGCATCATTAC+TGG 0.158225 8_1:+67491643 None:intergenic
CACATTAATAACAATTTAAA+AGG 0.199162 8_1:+67491415 None:intergenic
CAATTGCTTCCTTTGTATTT+TGG 0.201489 8_1:-67491363 Msa1209080:three_prime_UTR
TTCAATAATCATTATTAATT+AGG 0.206912 8_1:+67491503 None:intergenic
CTCTCTCATTGGTTGTGTTC+TGG 0.246248 8_1:+67494441 None:intergenic
ACATTAACAGTTACACATTA+AGG 0.272159 8_1:+67491480 None:intergenic
AAACAAGCAAATGGTTTGTA+TGG 0.336684 8_1:+67494360 None:intergenic
CTGAGAAGAGTTCCATTTGC+AGG 0.345657 8_1:-67492555 Msa1209080:CDS
TTCTTGAGAAGAGGAGAATC+AGG 0.349802 8_1:-67491839 Msa1209080:intron
AGTGACTGTCTGCGTGCTAA+TGG 0.352670 8_1:+67491870 None:intergenic
GCAAATGGTTTGTATGGTTA+AGG 0.359684 8_1:+67494366 None:intergenic
TTTGATGATGAAGAGGTATA+AGG 0.389455 8_1:+67491697 None:intergenic
TACATGAATGCACATGCTAT+TGG 0.398988 8_1:+67491587 None:intergenic
TTCAGGCCATTGTCAACATC+TGG 0.403016 8_1:-67492903 Msa1209080:intron
TGTACTTGCAACTCTCTCAT+TGG 0.407683 8_1:+67494430 None:intergenic
AGCATTTCTCTGCTGCTAAC+TGG 0.409603 8_1:-67494234 Msa1209080:intron
TGGAGAAGAAGGGGTGGTAC+TGG 0.425231 8_1:+67492630 None:intergenic
TGGTTAATTACTATGCACTA+TGG 0.436166 8_1:-67491339 Msa1209080:three_prime_UTR
AATTAAATTAAACAAGCAAA+TGG 0.445337 8_1:+67494351 None:intergenic
CCTCAAGTGGCATCATTACT+GGG 0.449490 8_1:+67491644 None:intergenic
GAGTTTCCTTGTGGAGAAGA+AGG 0.454205 8_1:+67492619 None:intergenic
CAAAATACAAAGGAAGCAAT+TGG 0.456838 8_1:+67491364 None:intergenic
GTGACTGTCTGCGTGCTAAT+GGG 0.472966 8_1:+67491871 None:intergenic
TGATGGAATTCCTGCAGAAA+AGG 0.473301 8_1:-67492814 Msa1209080:intron
AGCACCTTGCATCCTGCAAA+TGG 0.473835 8_1:+67492543 None:intergenic
ATGGAACTCTTCTCAGCAGC+AGG 0.483824 8_1:+67492562 None:intergenic
TCTCATTGGTTGTGTTCTGG+TGG 0.486999 8_1:+67494444 None:intergenic
CTCATTGGTTGTGTTCTGGT+GGG 0.492540 8_1:+67494445 None:intergenic
CCAGTAATGATGCCACTTGA+GGG 0.495749 8_1:-67491643 Msa1209080:CDS
ACTCTTCATTTCAGAAGACT+TGG 0.497623 8_1:+67492678 None:intergenic
ACTGGAAAAGAGTGAATTGA+AGG 0.506999 8_1:+67492648 None:intergenic
ATGGCAAACTGAGTTGTACC+AGG 0.519158 8_1:+67492864 None:intergenic
TTCAAAGGTTTCTTGAGAAG+AGG 0.521134 8_1:-67491848 Msa1209080:CDS
AGTTTCCTTGTGGAGAAGAA+GGG 0.523527 8_1:+67492620 None:intergenic
TGTCTCAGTTGCAGAGGAGA+GGG 0.525526 8_1:-67494469 Msa1209080:five_prime_UTR
CATTTCAGAAGACTTGGCAT+TGG 0.534645 8_1:+67492684 None:intergenic
CACGCAGACAGTCACTTCAA+AGG 0.541667 8_1:-67491863 Msa1209080:CDS
CCCAGTAATGATGCCACTTG+AGG 0.545434 8_1:-67491644 Msa1209080:CDS
CAGTACTATTTGCCCTCAAG+TGG 0.554249 8_1:+67491631 None:intergenic
CAGCAGGAAAACCAACTGAT+GGG 0.556381 8_1:+67492578 None:intergenic
AGTTCCATTTGCAGGATGCA+AGG 0.556537 8_1:-67492547 Msa1209080:intron
GCAGCAGGAAAACCAACTGA+TGG 0.557635 8_1:+67492577 None:intergenic
GGTGCATGAGATAATGATGA+TGG 0.567231 8_1:-67492713 Msa1209080:CDS
GGAAGCATGTGTGTATATGA+TGG 0.578130 8_1:-67492831 Msa1209080:CDS
GGACTAAATGCAATGACCCC+TGG 0.578930 8_1:-67492882 Msa1209080:CDS
CATGCTTCCATTGTAGAGGA+TGG 0.585189 8_1:+67492845 None:intergenic
GATACTATTAGAAGTAGTCA+TGG 0.588033 8_1:+67494300 None:intergenic
TTGAGGGCAAATAGTACTGT+TGG 0.591678 8_1:-67491627 Msa1209080:exon
CTGACTTCTAAGCATAACAA+TGG 0.591924 8_1:+67491258 None:intergenic
ATTAGGCATATAACATGGTG+TGG 0.595601 8_1:+67491520 None:intergenic
CAGTTTGCCATCCTCTACAA+TGG 0.597338 8_1:-67492852 Msa1209080:CDS
CACACATGCTTCCATTGTAG+AGG 0.599209 8_1:+67492841 None:intergenic
ATGTCTCAGTTGCAGAGGAG+AGG 0.599523 8_1:-67494470 Msa1209080:five_prime_UTR
GTTTCCTTGTGGAGAAGAAG+GGG 0.603228 8_1:+67492621 None:intergenic
AATAAATGTCTCAGTTGCAG+AGG 0.606207 8_1:-67494475 Msa1209080:five_prime_UTR
AGCAGGAAAACCAACTGATG+GGG 0.615564 8_1:+67492579 None:intergenic
AAGTCTTCTGAAATGAAGAG+TGG 0.618241 8_1:-67492676 Msa1209080:CDS
TTTAGTCCAGATGTTGACAA+TGG 0.630788 8_1:+67492897 None:intergenic
GAGAACATAACATAACATAG+TGG 0.633436 8_1:+67491542 None:intergenic
ATTAACCATCCAAAATACAA+AGG 0.637507 8_1:+67491354 None:intergenic
GCAGGAAAACCAACTGATGG+GGG 0.646756 8_1:+67492580 None:intergenic
AAATTGTCAGAGTTTCCTTG+TGG 0.648404 8_1:+67492610 None:intergenic
CTGGAAAAGAGTGAATTGAA+GGG 0.649560 8_1:+67492649 None:intergenic
ATAGTACTGTTGGTGTGAAG+TGG 0.650382 8_1:-67491617 Msa1209080:exon
TATTAATTAGGCATATAACA+TGG 0.660883 8_1:+67491515 None:intergenic
TCCTTGTGGAGAAGAAGGGG+TGG 0.661903 8_1:+67492624 None:intergenic
TGGCAAACTGAGTTGTACCA+GGG 0.668253 8_1:+67492865 None:intergenic
ACCACCCCTTCTTCTCCACA+AGG 0.677252 8_1:-67492625 Msa1209080:CDS
GGCAAACTGAGTTGTACCAG+GGG 0.692504 8_1:+67492866 None:intergenic
CTGACTTCTAAGCATAACAG+TGG 0.723681 8_1:+67491446 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGCTAATATATTTTTTTTA+GGG - chr8_1:67493440-67493459 Msa1209080:intron 10.0%
!!! AATTCATTCAAAATAATTTT+TGG - chr8_1:67493739-67493758 Msa1209080:intron 10.0%
!!! ATTTTTGTTTCTTTAATAAA+GGG - chr8_1:67494006-67494025 Msa1209080:intron 10.0%
!! TTCAATAATCATTATTAATT+AGG + chr8_1:67494240-67494259 None:intergenic 10.0%
!!! GTTTACATTATTTTTTTTAA+AGG + chr8_1:67494447-67494466 None:intergenic 10.0%
!! AATTAAATTAAACAAGCAAA+TGG + chr8_1:67491392-67491411 None:intergenic 15.0%
!! AAAGGAAAAAAAAAAACATA+GGG + chr8_1:67491712-67491731 None:intergenic 15.0%
!! ATGTATTAGAAAAAATTGAA+AGG - chr8_1:67491817-67491836 Msa1209080:intron 15.0%
!! AAAAATAACTATAGATACTT+CGG - chr8_1:67492083-67492102 Msa1209080:intron 15.0%
!!! TTAGATCTTGATATTTATTT+TGG - chr8_1:67492190-67492209 Msa1209080:intron 15.0%
!! TGCTTATATAAAAAAAAAGT+AGG + chr8_1:67492242-67492261 None:intergenic 15.0%
!!! GTTGCTAATATATTTTTTTT+AGG - chr8_1:67493439-67493458 Msa1209080:intron 15.0%
!! ATACTAATTTAAATCTTCTA+TGG - chr8_1:67493817-67493836 Msa1209080:intron 15.0%
!! CTTTATTAAAGAAACAAAAA+TGG + chr8_1:67494007-67494026 None:intergenic 15.0%
!!! CATTTTTGTTTCTTTAATAA+AGG - chr8_1:67494005-67494024 Msa1209080:intron 15.0%
!! CACATTAATAACAATTTAAA+AGG + chr8_1:67494328-67494347 None:intergenic 15.0%
!!! CATATCAATATATGTACTTT+TGG - chr8_1:67491545-67491564 Msa1209080:three_prime_UTR 20.0%
!! ATTCTAGATTACTAAAGTAT+AGG + chr8_1:67491578-67491597 None:intergenic 20.0%
!!! TACTTTAGTAATCTAGAATT+CGG - chr8_1:67491579-67491598 Msa1209080:three_prime_UTR 20.0%
!! AAATATGACGAGAATTATTT+CGG - chr8_1:67491616-67491635 Msa1209080:three_prime_UTR 20.0%
!! GAAAGGAAAAAAAAAAACAT+AGG + chr8_1:67491713-67491732 None:intergenic 20.0%
!! ACAAAAAACACAATCAAATA+TGG + chr8_1:67491735-67491754 None:intergenic 20.0%
!! ACATGATTATTATGTTTAGT+TGG + chr8_1:67492041-67492060 None:intergenic 20.0%
!! TTTCACTAAATCAAGATTAT+GGG + chr8_1:67492065-67492084 None:intergenic 20.0%
!!! TTTTCACTAAATCAAGATTA+TGG + chr8_1:67492066-67492085 None:intergenic 20.0%
!!! TAGTGATTATGTTAGTTTTT+AGG - chr8_1:67492282-67492301 Msa1209080:intron 20.0%
!!! AGTGATTATGTTAGTTTTTA+GGG - chr8_1:67492283-67492302 Msa1209080:intron 20.0%
!! TTAAACTCAAAATGAGTTAA+GGG + chr8_1:67492348-67492367 None:intergenic 20.0%
!!! TAAGAATCCACTTTTTTTAT+AGG - chr8_1:67492365-67492384 Msa1209080:intron 20.0%
!!! TATTTTGCCTATAAAAAAAG+TGG + chr8_1:67492375-67492394 None:intergenic 20.0%
!! TCAAAATTTGCATTGAAATA+TGG + chr8_1:67492589-67492608 None:intergenic 20.0%
!!! AAGTTTAAGTTTGTTTTTGT+GGG + chr8_1:67492733-67492752 None:intergenic 20.0%
!!! TAAGTTTAAGTTTGTTTTTG+TGG + chr8_1:67492734-67492753 None:intergenic 20.0%
!! TGAGAAATGTATATATTGTT+TGG + chr8_1:67492772-67492791 None:intergenic 20.0%
!! TAGTAGTAATATAATGAAAG+AGG + chr8_1:67493224-67493243 None:intergenic 20.0%
!! TTATATTACTACTACTAAAG+AGG - chr8_1:67493230-67493249 Msa1209080:intron 20.0%
!!! CATTTTTCGGTTTTTAATTT+CGG + chr8_1:67493324-67493343 None:intergenic 20.0%
!!! ACTAATTTGATCTTTTTAGA+CGG - chr8_1:67493376-67493395 Msa1209080:intron 20.0%
!!! TTTTTTGGTTACATTCAAAA+TGG + chr8_1:67493508-67493527 None:intergenic 20.0%
!! ACCAAAAAAAAGTTTCAATT+TGG - chr8_1:67493519-67493538 Msa1209080:intron 20.0%
!!! TCCAAATTGAAACTTTTTTT+TGG + chr8_1:67493523-67493542 None:intergenic 20.0%
!! GTTGCAAAAAATAAATTTGA+GGG + chr8_1:67493640-67493659 None:intergenic 20.0%
!! AGTTGCAAAAAATAAATTTG+AGG + chr8_1:67493641-67493660 None:intergenic 20.0%
!! GATAAATGTAAAGTAATTCA+AGG + chr8_1:67493687-67493706 None:intergenic 20.0%
!!! TTTACATTTATCTCACTTTT+AGG - chr8_1:67493695-67493714 Msa1209080:intron 20.0%
!!! TCATTCAAAATAATTTTTGG+CGG - chr8_1:67493742-67493761 Msa1209080:intron 20.0%
!! ATAACAATCAATTACAACAA+TGG + chr8_1:67493962-67493981 None:intergenic 20.0%
!! TATTAATTAGGCATATAACA+TGG + chr8_1:67494228-67494247 None:intergenic 20.0%
! AAACACAATCAAATATGGAA+AGG + chr8_1:67491730-67491749 None:intergenic 25.0%
! GTAGGTATTCATGATAATAA+TGG + chr8_1:67491758-67491777 None:intergenic 25.0%
! CCTATAACAAGAATTGAAAT+TGG + chr8_1:67492142-67492161 None:intergenic 25.0%
!! CCAATTTCAATTCTTGTTAT+AGG - chr8_1:67492139-67492158 Msa1209080:intron 25.0%
!! AATTCTTGTTATAGGATTGT+TGG - chr8_1:67492147-67492166 Msa1209080:intron 25.0%
! CTTAAACTCAAAATGAGTTA+AGG + chr8_1:67492349-67492368 None:intergenic 25.0%
! TAGGCAAAATATTAGTAAGT+TGG - chr8_1:67492384-67492403 Msa1209080:intron 25.0%
!!! AAATCAAAAGTGCTTAAAGT+AGG + chr8_1:67492448-67492467 None:intergenic 25.0%
!! TCTTTGCTTGTTAACAATTT+AGG - chr8_1:67493006-67493025 Msa1209080:intron 25.0%
!!! TAGTGAGAAAGTTCATTTTT+CGG + chr8_1:67493337-67493356 None:intergenic 25.0%
!! AAAAGTTTCAATTTGGAATG+TGG - chr8_1:67493526-67493545 Msa1209080:intron 25.0%
!! TTTAAATCTTCTATGGCTTT+TGG - chr8_1:67493824-67493843 Msa1209080:intron 25.0%
! ACATTAACAGTTACACATTA+AGG + chr8_1:67494263-67494282 None:intergenic 25.0%
! ATTAACCATCCAAAATACAA+AGG + chr8_1:67494389-67494408 None:intergenic 25.0%
! AAACAAGCAAATGGTTTGTA+TGG + chr8_1:67491383-67491402 None:intergenic 30.0%
GATACTATTAGAAGTAGTCA+TGG + chr8_1:67491443-67491462 None:intergenic 30.0%
AAAAAAAAAACATAGGGCTG+TGG + chr8_1:67491706-67491725 None:intergenic 30.0%
! CTTAATAAAAACCCCTTTTG+AGG + chr8_1:67491780-67491799 None:intergenic 30.0%
! AAGGGGTTTTTATTAAGCAT+AGG - chr8_1:67491783-67491802 Msa1209080:intron 30.0%
GAATGATCTTGAAATTGAAC+AGG - chr8_1:67491839-67491858 Msa1209080:intron 30.0%
!! TTGAACTTTGAAACCATCTT+TGG - chr8_1:67491908-67491927 Msa1209080:intron 30.0%
!! TGAACTTTGAAACCATCTTT+GGG - chr8_1:67491909-67491928 Msa1209080:intron 30.0%
ACTAAACATAATCCCAAAGA+TGG + chr8_1:67491924-67491943 None:intergenic 30.0%
TGTTTAGTATGAACTTGAGA+TGG - chr8_1:67491936-67491955 Msa1209080:intron 30.0%
AATAACTATAGATACTTCGG+TGG - chr8_1:67492086-67492105 Msa1209080:intron 30.0%
! TTGTTATAGGATTGTTGGTT+GGG - chr8_1:67492152-67492171 Msa1209080:intron 30.0%
ATTATCCAATCAAGATCAGA+TGG + chr8_1:67492653-67492672 None:intergenic 30.0%
TTGATTGGATAATCTAGATG+TGG - chr8_1:67492660-67492679 Msa1209080:CDS 30.0%
!!! AAGTTTGTTTTTGTGGGATT+TGG + chr8_1:67492727-67492746 None:intergenic 30.0%
TTGATGAACAAGTGTATCTT+TGG + chr8_1:67493775-67493794 None:intergenic 30.0%
!! TTTGATGATGAAGAGGTATA+AGG + chr8_1:67494046-67494065 None:intergenic 30.0%
GAGAACATAACATAACATAG+TGG + chr8_1:67494201-67494220 None:intergenic 30.0%
CAAAATACAAAGGAAGCAAT+TGG + chr8_1:67494379-67494398 None:intergenic 30.0%
! CAATTGCTTCCTTTGTATTT+TGG - chr8_1:67494377-67494396 Msa1209080:five_prime_UTR 30.0%
TGGTTAATTACTATGCACTA+TGG - chr8_1:67494401-67494420 Msa1209080:five_prime_UTR 30.0%
AATAAATGTCTCAGTTGCAG+AGG - chr8_1:67491265-67491284 Msa1209080:three_prime_UTR 35.0%
! GCAAATGGTTTGTATGGTTA+AGG + chr8_1:67491377-67491396 None:intergenic 35.0%
TGACGAGAATTATTTCGGTT+AGG - chr8_1:67491621-67491640 Msa1209080:exon 35.0%
TCATGAATACCTACCTCAAA+AGG - chr8_1:67491764-67491783 Msa1209080:intron 35.0%
CATGAATACCTACCTCAAAA+GGG - chr8_1:67491765-67491784 Msa1209080:intron 35.0%
ATGAATACCTACCTCAAAAG+GGG - chr8_1:67491766-67491785 Msa1209080:intron 35.0%
!!! ATAAAAACCCCTTTTGAGGT+AGG + chr8_1:67491776-67491795 None:intergenic 35.0%
! CTTGTTATAGGATTGTTGGT+TGG - chr8_1:67492151-67492170 Msa1209080:intron 35.0%
!! AAACCGAAAGTGCTTTAAGT+AGG + chr8_1:67492325-67492344 None:intergenic 35.0%
!! TCAAAAGTGCTTAAAGTAGG+AGG + chr8_1:67492445-67492464 None:intergenic 35.0%
! TCTGAAGTATGTAGTTCGAA+TGG + chr8_1:67492483-67492502 None:intergenic 35.0%
TTGGATAATCTAGATGTGGT+TGG - chr8_1:67492664-67492683 Msa1209080:CDS 35.0%
TTTAGTCCAGATGTTGACAA+TGG + chr8_1:67492846-67492865 None:intergenic 35.0%
AAAGTAAACTAGTGAAGTGC+TGG + chr8_1:67492980-67492999 None:intergenic 35.0%
ACTCTTCATTTCAGAAGACT+TGG + chr8_1:67493065-67493084 None:intergenic 35.0%
!! AAGTCTTCTGAAATGAAGAG+TGG - chr8_1:67493064-67493083 Msa1209080:intron 35.0%
CTGGAAAAGAGTGAATTGAA+GGG + chr8_1:67493094-67493113 None:intergenic 35.0%
ACTGGAAAAGAGTGAATTGA+AGG + chr8_1:67493095-67493114 None:intergenic 35.0%
AAATTGTCAGAGTTTCCTTG+TGG + chr8_1:67493133-67493152 None:intergenic 35.0%
AGGGTTGAGATCAATAATAG+AGG + chr8_1:67493621-67493640 None:intergenic 35.0%
!!! CAAAATAATTTTTGGCGGTG+CGG - chr8_1:67493747-67493766 Msa1209080:intron 35.0%
TTCAAAGGTTTCTTGAGAAG+AGG - chr8_1:67493892-67493911 Msa1209080:intron 35.0%
TCTAAACATGACATGTTGCT+AGG + chr8_1:67493935-67493954 None:intergenic 35.0%
TACATGAATGCACATGCTAT+TGG + chr8_1:67494156-67494175 None:intergenic 35.0%
ATTAGGCATATAACATGGTG+TGG + chr8_1:67494223-67494242 None:intergenic 35.0%
!! TGCTTCCTTTGTATTTTGGA+TGG - chr8_1:67494381-67494400 Msa1209080:five_prime_UTR 35.0%
CTGACTTCTAAGCATAACAA+TGG + chr8_1:67494485-67494504 None:intergenic 35.0%
TGTACTTGCAACTCTCTCAT+TGG + chr8_1:67491313-67491332 None:intergenic 40.0%
GGTAAGCACAACAAGTTTCT+TGG - chr8_1:67491860-67491879 Msa1209080:CDS 40.0%
! TTGTTGTCATGTTGGTTGAG+AGG + chr8_1:67492216-67492235 None:intergenic 40.0%
! GTAGGTTCTTGTTGTCATGT+TGG + chr8_1:67492224-67492243 None:intergenic 40.0%
! CCTCCTACTTAAAGCACTTT+CGG - chr8_1:67492319-67492338 Msa1209080:intron 40.0%
! GGAAGCATGTGTGTATATGA+TGG - chr8_1:67492909-67492928 Msa1209080:intron 40.0%
TGATGGAATTCCTGCAGAAA+AGG - chr8_1:67492926-67492945 Msa1209080:intron 40.0%
GGTGCATGAGATAATGATGA+TGG - chr8_1:67493027-67493046 Msa1209080:intron 40.0%
CATTTCAGAAGACTTGGCAT+TGG + chr8_1:67493059-67493078 None:intergenic 40.0%
AGTTTCCTTGTGGAGAAGAA+GGG + chr8_1:67493123-67493142 None:intergenic 40.0%
TTCTTGAGAAGAGGAGAATC+AGG - chr8_1:67493901-67493920 Msa1209080:intron 40.0%
!!! AGCTGCTTTTGATGATGAAG+AGG + chr8_1:67494053-67494072 None:intergenic 40.0%
TTGAGGGCAAATAGTACTGT+TGG - chr8_1:67494113-67494132 Msa1209080:intron 40.0%
ATAGTACTGTTGGTGTGAAG+TGG - chr8_1:67494123-67494142 Msa1209080:intron 40.0%
CTGACTTCTAAGCATAACAG+TGG + chr8_1:67494297-67494316 None:intergenic 40.0%
! CTCATTGGTTGTGTTCTGGT+GGG + chr8_1:67491298-67491317 None:intergenic 45.0%
! TCTCATTGGTTGTGTTCTGG+TGG + chr8_1:67491299-67491318 None:intergenic 45.0%
! CTCTCTCATTGGTTGTGTTC+TGG + chr8_1:67491302-67491321 None:intergenic 45.0%
AGCATTTCTCTGCTGCTAAC+TGG - chr8_1:67491506-67491525 Msa1209080:three_prime_UTR 45.0%
! GTGCTTTAAGTAGGAGGTCT+AGG + chr8_1:67492316-67492335 None:intergenic 45.0%
!! CCGAAAGTGCTTTAAGTAGG+AGG + chr8_1:67492322-67492341 None:intergenic 45.0%
GTGCTTAAAGTAGGAGGTCT+GGG + chr8_1:67492439-67492458 None:intergenic 45.0%
AGTGCTTAAAGTAGGAGGTC+TGG + chr8_1:67492440-67492459 None:intergenic 45.0%
TAGACACAGTCAACCACATC+CGG - chr8_1:67492539-67492558 Msa1209080:intron 45.0%
CTTATCGTGATCAGACAGTC+CGG + chr8_1:67492561-67492580 None:intergenic 45.0%
CCAATCAAGATCAGATGGTC+TGG + chr8_1:67492648-67492667 None:intergenic 45.0%
CCAGACCATCTGATCTTGAT+TGG - chr8_1:67492645-67492664 Msa1209080:CDS 45.0%
! GCAGTCACAAGGTTTGTTTG+TGG - chr8_1:67492690-67492709 Msa1209080:CDS 45.0%
ATGTTGACAATGGCCTGAAG+GGG + chr8_1:67492836-67492855 None:intergenic 45.0%
GATGTTGACAATGGCCTGAA+GGG + chr8_1:67492837-67492856 None:intergenic 45.0%
AGATGTTGACAATGGCCTGA+AGG + chr8_1:67492838-67492857 None:intergenic 45.0%
TTCAGGCCATTGTCAACATC+TGG - chr8_1:67492837-67492856 Msa1209080:CDS 45.0%
TGGCAAACTGAGTTGTACCA+GGG + chr8_1:67492878-67492897 None:intergenic 45.0%
ATGGCAAACTGAGTTGTACC+AGG + chr8_1:67492879-67492898 None:intergenic 45.0%
CAGTTTGCCATCCTCTACAA+TGG - chr8_1:67492888-67492907 Msa1209080:CDS 45.0%
CATGCTTCCATTGTAGAGGA+TGG + chr8_1:67492898-67492917 None:intergenic 45.0%
CACACATGCTTCCATTGTAG+AGG + chr8_1:67492902-67492921 None:intergenic 45.0%
! GCAGTGTTTACCTTTTCTGC+AGG + chr8_1:67492939-67492958 None:intergenic 45.0%
GTTTCCTTGTGGAGAAGAAG+GGG + chr8_1:67493122-67493141 None:intergenic 45.0%
GAGTTTCCTTGTGGAGAAGA+AGG + chr8_1:67493124-67493143 None:intergenic 45.0%
AGCAGGAAAACCAACTGATG+GGG + chr8_1:67493164-67493183 None:intergenic 45.0%
CAGCAGGAAAACCAACTGAT+GGG + chr8_1:67493165-67493184 None:intergenic 45.0%
CTGAGAAGAGTTCCATTTGC+AGG - chr8_1:67493185-67493204 Msa1209080:intron 45.0%
AGTTCCATTTGCAGGATGCA+AGG - chr8_1:67493193-67493212 Msa1209080:intron 45.0%
CCTCAAGTGGCATCATTACT+GGG + chr8_1:67494099-67494118 None:intergenic 45.0%
! CCAGTAATGATGCCACTTGA+GGG - chr8_1:67494097-67494116 Msa1209080:intron 45.0%
CAGTACTATTTGCCCTCAAG+TGG + chr8_1:67494112-67494131 None:intergenic 45.0%
ATGTCTCAGTTGCAGAGGAG+AGG - chr8_1:67491270-67491289 Msa1209080:three_prime_UTR 50.0%
TGTCTCAGTTGCAGAGGAGA+GGG - chr8_1:67491271-67491290 Msa1209080:three_prime_UTR 50.0%
TCTGCTAGCAACAGCAGTCT+TGG + chr8_1:67491999-67492018 None:intergenic 50.0%
! TAGGAGGTCTGGGATTCGAA+TGG + chr8_1:67492429-67492448 None:intergenic 50.0%
GGACTAAATGCAATGACCCC+TGG - chr8_1:67492858-67492877 Msa1209080:CDS 50.0%
GGCAAACTGAGTTGTACCAG+GGG + chr8_1:67492877-67492896 None:intergenic 50.0%
AAACCAACTGATGGGGGAGA+AGG + chr8_1:67493157-67493176 None:intergenic 50.0%
GCAGGAAAACCAACTGATGG+GGG + chr8_1:67493163-67493182 None:intergenic 50.0%
GCAGCAGGAAAACCAACTGA+TGG + chr8_1:67493166-67493185 None:intergenic 50.0%
ATGGAACTCTTCTCAGCAGC+AGG + chr8_1:67493181-67493200 None:intergenic 50.0%
AGCACCTTGCATCCTGCAAA+TGG + chr8_1:67493200-67493219 None:intergenic 50.0%
GTGACTGTCTGCGTGCTAAT+GGG + chr8_1:67493872-67493891 None:intergenic 50.0%
AGTGACTGTCTGCGTGCTAA+TGG + chr8_1:67493873-67493892 None:intergenic 50.0%
CACGCAGACAGTCACTTCAA+AGG - chr8_1:67493877-67493896 Msa1209080:intron 50.0%
! CCCAGTAATGATGCCACTTG+AGG - chr8_1:67494096-67494115 Msa1209080:intron 50.0%
CCCTCAAGTGGCATCATTAC+TGG + chr8_1:67494100-67494119 None:intergenic 50.0%
GTGATCAGACAGTCCGGATG+TGG + chr8_1:67492555-67492574 None:intergenic 55.0%
CAATGGCCTGAAGGGGAAAG+AGG + chr8_1:67492829-67492848 None:intergenic 55.0%
TGGAGAAGAAGGGGTGGTAC+TGG + chr8_1:67493113-67493132 None:intergenic 55.0%
ACCACCCCTTCTTCTCCACA+AGG - chr8_1:67493115-67493134 Msa1209080:intron 55.0%
TCCTTGTGGAGAAGAAGGGG+TGG + chr8_1:67493119-67493138 None:intergenic 55.0%
TTGCCTTCTCCCCCATCAGT+TGG - chr8_1:67493151-67493170 Msa1209080:intron 55.0%
GTGGTTGGCACGCAGTCACA+AGG - chr8_1:67492679-67492698 Msa1209080:CDS 60.0%
GCCTTGCCTCTTTCCCCTTC+AGG - chr8_1:67492820-67492839 Msa1209080:CDS 60.0%
GCCTGAAGGGGAAAGAGGCA+AGG + chr8_1:67492824-67492843 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 67491256 67494506 67491256 ID=Msa1209080;Name=Msa1209080
chr8_1 mRNA 67491256 67494506 67491256 ID=Msa1209080-mRNA-1;Parent=Msa1209080;Name=Msa1209080-mRNA-1;_AED=0.02;_eAED=0.02;_QI=186|1|1|1|1|1|5|380|178
chr8_1 exon 67491256 67491735 67491256 ID=Msa1209080-mRNA-1:exon:22337;Parent=Msa1209080-mRNA-1
chr8_1 exon 67491840 67491897 67491840 ID=Msa1209080-mRNA-1:exon:22336;Parent=Msa1209080-mRNA-1
chr8_1 exon 67492548 67492734 67492548 ID=Msa1209080-mRNA-1:exon:22335;Parent=Msa1209080-mRNA-1
chr8_1 exon 67492815 67492920 67492815 ID=Msa1209080-mRNA-1:exon:22334;Parent=Msa1209080-mRNA-1
chr8_1 exon 67494235 67494506 67494235 ID=Msa1209080-mRNA-1:exon:22333;Parent=Msa1209080-mRNA-1
chr8_1 five_prime_UTR 67494321 67494506 67494321 ID=Msa1209080-mRNA-1:five_prime_utr;Parent=Msa1209080-mRNA-1
chr8_1 CDS 67494235 67494320 67494235 ID=Msa1209080-mRNA-1:cds;Parent=Msa1209080-mRNA-1
chr8_1 CDS 67492815 67492920 67492815 ID=Msa1209080-mRNA-1:cds;Parent=Msa1209080-mRNA-1
chr8_1 CDS 67492548 67492734 67492548 ID=Msa1209080-mRNA-1:cds;Parent=Msa1209080-mRNA-1
chr8_1 CDS 67491840 67491897 67491840 ID=Msa1209080-mRNA-1:cds;Parent=Msa1209080-mRNA-1
chr8_1 CDS 67491636 67491735 67491636 ID=Msa1209080-mRNA-1:cds;Parent=Msa1209080-mRNA-1
chr8_1 three_prime_UTR 67491256 67491635 67491256 ID=Msa1209080-mRNA-1:three_prime_utr;Parent=Msa1209080-mRNA-1
Gene Sequence

>Msa1209080

ATGACTACTTCTAATAGTATCAATAATGTTGACATTAACAGCATCAGTGATCAAGAGTCAGTGAAGCATTTCTCTGCTGCTAACTGGCCATTGTCAACATCTGGACTAAATGCAATGACCCCTGGTACAACTCAGTTTGCCATCCTCTACAATGGAAGCATGTGTGTATATGATGGAATTCCTGCAGAAAAGGTGCATGAGATAATGATGATGGCTTCTGCCAATGCCAAGTCTTCTGAAATGAAGAGTGGAATTCCCTTCAATTCACTCTTTTCCAGTACCACCCCTTCTTCTCCACAAGGAAACTCTGACAATTTGCCTTCTCCCCCATCAGTTGGTTTTCCTGCTGCTGAGAAGAGTTCCATTTGCAGGATGCAAGAATTCCCATTAGCACGCAGACAGTCACTTCAAAGGTTTCTTGAGAAGAGGAGAATCAGGGTACGTAGCAAAGCACCTTATACCTCTTCATCATCAAAAGCAGCTAACAACATTGATAACGATTTCAGCCCAGTAATGATGCCACTTGAGGGCAAATAG

Protein sequence

>Msa1209080

MTTSNSINNVDINSISDQESVKHFSAANWPLSTSGLNAMTPGTTQFAILYNGSMCVYDGIPAEKVHEIMMMASANAKSSEMKSGIPFNSLFSSTTPSSPQGNSDNLPSPPSVGFPAAEKSSICRMQEFPLARRQSLQRFLEKRRIRVRSKAPYTSSSSKAANNIDNDFSPVMMPLEGK*