Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1209080 | XP_003609915.1 | 96.629 | 178 | 6 | 0 | 1 | 178 | 1 | 178 | 3.85e-122 | 352 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1209080 | sp|Q9C5K8|TIF3B_ARATH | 40.000 | 120 | 66 | 4 | 45 | 162 | 57 | 172 | 3.24e-17 | 78.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa1209080 | TF | Tify |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1209080 | MtrunA17_Chr4g0069721 | 96.629 | 178 | 6 | 0 | 1 | 178 | 1 | 178 | 3.54e-126 | 352 |
| Msa1209080 | MtrunA17_Chr2g0302041 | 56.463 | 147 | 59 | 3 | 25 | 168 | 38 | 182 | 5.96e-47 | 152 |
| Msa1209080 | MtrunA17_Chr5g0399851 | 34.848 | 132 | 69 | 2 | 41 | 168 | 17 | 135 | 8.30e-18 | 75.9 |
| Msa1209080 | MtrunA17_Chr5g0399861 | 30.328 | 122 | 70 | 2 | 41 | 162 | 40 | 146 | 9.07e-13 | 63.2 |
| Msa1209080 | MtrunA17_Chr5g0399881 | 30.081 | 123 | 71 | 2 | 41 | 163 | 40 | 147 | 9.06e-12 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1209080 | AT5G20900.1 | 40.000 | 120 | 66 | 4 | 45 | 162 | 57 | 172 | 3.29e-18 | 78.2 |
| Msa1209080 | AT3G43440.1 | 35.833 | 120 | 59 | 3 | 44 | 163 | 130 | 231 | 7.98e-16 | 72.8 |
| Msa1209080 | AT3G43440.2 | 32.824 | 131 | 67 | 4 | 42 | 172 | 42 | 151 | 2.84e-15 | 69.7 |
| Msa1209080 | AT1G19180.2 | 34.234 | 111 | 65 | 1 | 43 | 153 | 58 | 160 | 7.40e-12 | 61.2 |
| Msa1209080 | AT1G19180.1 | 34.234 | 111 | 65 | 1 | 43 | 153 | 124 | 226 | 2.42e-11 | 60.8 |
| Msa1209080 | AT1G19180.3 | 34.234 | 111 | 65 | 1 | 43 | 153 | 124 | 226 | 2.42e-11 | 60.8 |
Find 70 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTCAAGTGGCATCATTAC+TGG | 0.158225 | 8_1:+67491643 | None:intergenic |
| CACATTAATAACAATTTAAA+AGG | 0.199162 | 8_1:+67491415 | None:intergenic |
| CAATTGCTTCCTTTGTATTT+TGG | 0.201489 | 8_1:-67491363 | Msa1209080:three_prime_UTR |
| TTCAATAATCATTATTAATT+AGG | 0.206912 | 8_1:+67491503 | None:intergenic |
| CTCTCTCATTGGTTGTGTTC+TGG | 0.246248 | 8_1:+67494441 | None:intergenic |
| ACATTAACAGTTACACATTA+AGG | 0.272159 | 8_1:+67491480 | None:intergenic |
| AAACAAGCAAATGGTTTGTA+TGG | 0.336684 | 8_1:+67494360 | None:intergenic |
| CTGAGAAGAGTTCCATTTGC+AGG | 0.345657 | 8_1:-67492555 | Msa1209080:CDS |
| TTCTTGAGAAGAGGAGAATC+AGG | 0.349802 | 8_1:-67491839 | Msa1209080:intron |
| AGTGACTGTCTGCGTGCTAA+TGG | 0.352670 | 8_1:+67491870 | None:intergenic |
| GCAAATGGTTTGTATGGTTA+AGG | 0.359684 | 8_1:+67494366 | None:intergenic |
| TTTGATGATGAAGAGGTATA+AGG | 0.389455 | 8_1:+67491697 | None:intergenic |
| TACATGAATGCACATGCTAT+TGG | 0.398988 | 8_1:+67491587 | None:intergenic |
| TTCAGGCCATTGTCAACATC+TGG | 0.403016 | 8_1:-67492903 | Msa1209080:intron |
| TGTACTTGCAACTCTCTCAT+TGG | 0.407683 | 8_1:+67494430 | None:intergenic |
| AGCATTTCTCTGCTGCTAAC+TGG | 0.409603 | 8_1:-67494234 | Msa1209080:intron |
| TGGAGAAGAAGGGGTGGTAC+TGG | 0.425231 | 8_1:+67492630 | None:intergenic |
| TGGTTAATTACTATGCACTA+TGG | 0.436166 | 8_1:-67491339 | Msa1209080:three_prime_UTR |
| AATTAAATTAAACAAGCAAA+TGG | 0.445337 | 8_1:+67494351 | None:intergenic |
| CCTCAAGTGGCATCATTACT+GGG | 0.449490 | 8_1:+67491644 | None:intergenic |
| GAGTTTCCTTGTGGAGAAGA+AGG | 0.454205 | 8_1:+67492619 | None:intergenic |
| CAAAATACAAAGGAAGCAAT+TGG | 0.456838 | 8_1:+67491364 | None:intergenic |
| GTGACTGTCTGCGTGCTAAT+GGG | 0.472966 | 8_1:+67491871 | None:intergenic |
| TGATGGAATTCCTGCAGAAA+AGG | 0.473301 | 8_1:-67492814 | Msa1209080:intron |
| AGCACCTTGCATCCTGCAAA+TGG | 0.473835 | 8_1:+67492543 | None:intergenic |
| ATGGAACTCTTCTCAGCAGC+AGG | 0.483824 | 8_1:+67492562 | None:intergenic |
| TCTCATTGGTTGTGTTCTGG+TGG | 0.486999 | 8_1:+67494444 | None:intergenic |
| CTCATTGGTTGTGTTCTGGT+GGG | 0.492540 | 8_1:+67494445 | None:intergenic |
| CCAGTAATGATGCCACTTGA+GGG | 0.495749 | 8_1:-67491643 | Msa1209080:CDS |
| ACTCTTCATTTCAGAAGACT+TGG | 0.497623 | 8_1:+67492678 | None:intergenic |
| ACTGGAAAAGAGTGAATTGA+AGG | 0.506999 | 8_1:+67492648 | None:intergenic |
| ATGGCAAACTGAGTTGTACC+AGG | 0.519158 | 8_1:+67492864 | None:intergenic |
| TTCAAAGGTTTCTTGAGAAG+AGG | 0.521134 | 8_1:-67491848 | Msa1209080:CDS |
| AGTTTCCTTGTGGAGAAGAA+GGG | 0.523527 | 8_1:+67492620 | None:intergenic |
| TGTCTCAGTTGCAGAGGAGA+GGG | 0.525526 | 8_1:-67494469 | Msa1209080:five_prime_UTR |
| CATTTCAGAAGACTTGGCAT+TGG | 0.534645 | 8_1:+67492684 | None:intergenic |
| CACGCAGACAGTCACTTCAA+AGG | 0.541667 | 8_1:-67491863 | Msa1209080:CDS |
| CCCAGTAATGATGCCACTTG+AGG | 0.545434 | 8_1:-67491644 | Msa1209080:CDS |
| CAGTACTATTTGCCCTCAAG+TGG | 0.554249 | 8_1:+67491631 | None:intergenic |
| CAGCAGGAAAACCAACTGAT+GGG | 0.556381 | 8_1:+67492578 | None:intergenic |
| AGTTCCATTTGCAGGATGCA+AGG | 0.556537 | 8_1:-67492547 | Msa1209080:intron |
| GCAGCAGGAAAACCAACTGA+TGG | 0.557635 | 8_1:+67492577 | None:intergenic |
| GGTGCATGAGATAATGATGA+TGG | 0.567231 | 8_1:-67492713 | Msa1209080:CDS |
| GGAAGCATGTGTGTATATGA+TGG | 0.578130 | 8_1:-67492831 | Msa1209080:CDS |
| GGACTAAATGCAATGACCCC+TGG | 0.578930 | 8_1:-67492882 | Msa1209080:CDS |
| CATGCTTCCATTGTAGAGGA+TGG | 0.585189 | 8_1:+67492845 | None:intergenic |
| GATACTATTAGAAGTAGTCA+TGG | 0.588033 | 8_1:+67494300 | None:intergenic |
| TTGAGGGCAAATAGTACTGT+TGG | 0.591678 | 8_1:-67491627 | Msa1209080:exon |
| CTGACTTCTAAGCATAACAA+TGG | 0.591924 | 8_1:+67491258 | None:intergenic |
| ATTAGGCATATAACATGGTG+TGG | 0.595601 | 8_1:+67491520 | None:intergenic |
| CAGTTTGCCATCCTCTACAA+TGG | 0.597338 | 8_1:-67492852 | Msa1209080:CDS |
| CACACATGCTTCCATTGTAG+AGG | 0.599209 | 8_1:+67492841 | None:intergenic |
| ATGTCTCAGTTGCAGAGGAG+AGG | 0.599523 | 8_1:-67494470 | Msa1209080:five_prime_UTR |
| GTTTCCTTGTGGAGAAGAAG+GGG | 0.603228 | 8_1:+67492621 | None:intergenic |
| AATAAATGTCTCAGTTGCAG+AGG | 0.606207 | 8_1:-67494475 | Msa1209080:five_prime_UTR |
| AGCAGGAAAACCAACTGATG+GGG | 0.615564 | 8_1:+67492579 | None:intergenic |
| AAGTCTTCTGAAATGAAGAG+TGG | 0.618241 | 8_1:-67492676 | Msa1209080:CDS |
| TTTAGTCCAGATGTTGACAA+TGG | 0.630788 | 8_1:+67492897 | None:intergenic |
| GAGAACATAACATAACATAG+TGG | 0.633436 | 8_1:+67491542 | None:intergenic |
| ATTAACCATCCAAAATACAA+AGG | 0.637507 | 8_1:+67491354 | None:intergenic |
| GCAGGAAAACCAACTGATGG+GGG | 0.646756 | 8_1:+67492580 | None:intergenic |
| AAATTGTCAGAGTTTCCTTG+TGG | 0.648404 | 8_1:+67492610 | None:intergenic |
| CTGGAAAAGAGTGAATTGAA+GGG | 0.649560 | 8_1:+67492649 | None:intergenic |
| ATAGTACTGTTGGTGTGAAG+TGG | 0.650382 | 8_1:-67491617 | Msa1209080:exon |
| TATTAATTAGGCATATAACA+TGG | 0.660883 | 8_1:+67491515 | None:intergenic |
| TCCTTGTGGAGAAGAAGGGG+TGG | 0.661903 | 8_1:+67492624 | None:intergenic |
| TGGCAAACTGAGTTGTACCA+GGG | 0.668253 | 8_1:+67492865 | None:intergenic |
| ACCACCCCTTCTTCTCCACA+AGG | 0.677252 | 8_1:-67492625 | Msa1209080:CDS |
| GGCAAACTGAGTTGTACCAG+GGG | 0.692504 | 8_1:+67492866 | None:intergenic |
| CTGACTTCTAAGCATAACAG+TGG | 0.723681 | 8_1:+67491446 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGCTAATATATTTTTTTTA+GGG | - | chr8_1:67493440-67493459 | Msa1209080:intron | 10.0% |
| !!! | AATTCATTCAAAATAATTTT+TGG | - | chr8_1:67493739-67493758 | Msa1209080:intron | 10.0% |
| !!! | ATTTTTGTTTCTTTAATAAA+GGG | - | chr8_1:67494006-67494025 | Msa1209080:intron | 10.0% |
| !! | TTCAATAATCATTATTAATT+AGG | + | chr8_1:67494240-67494259 | None:intergenic | 10.0% |
| !!! | GTTTACATTATTTTTTTTAA+AGG | + | chr8_1:67494447-67494466 | None:intergenic | 10.0% |
| !! | AATTAAATTAAACAAGCAAA+TGG | + | chr8_1:67491392-67491411 | None:intergenic | 15.0% |
| !! | AAAGGAAAAAAAAAAACATA+GGG | + | chr8_1:67491712-67491731 | None:intergenic | 15.0% |
| !! | ATGTATTAGAAAAAATTGAA+AGG | - | chr8_1:67491817-67491836 | Msa1209080:intron | 15.0% |
| !! | AAAAATAACTATAGATACTT+CGG | - | chr8_1:67492083-67492102 | Msa1209080:intron | 15.0% |
| !!! | TTAGATCTTGATATTTATTT+TGG | - | chr8_1:67492190-67492209 | Msa1209080:intron | 15.0% |
| !! | TGCTTATATAAAAAAAAAGT+AGG | + | chr8_1:67492242-67492261 | None:intergenic | 15.0% |
| !!! | GTTGCTAATATATTTTTTTT+AGG | - | chr8_1:67493439-67493458 | Msa1209080:intron | 15.0% |
| !! | ATACTAATTTAAATCTTCTA+TGG | - | chr8_1:67493817-67493836 | Msa1209080:intron | 15.0% |
| !! | CTTTATTAAAGAAACAAAAA+TGG | + | chr8_1:67494007-67494026 | None:intergenic | 15.0% |
| !!! | CATTTTTGTTTCTTTAATAA+AGG | - | chr8_1:67494005-67494024 | Msa1209080:intron | 15.0% |
| !! | CACATTAATAACAATTTAAA+AGG | + | chr8_1:67494328-67494347 | None:intergenic | 15.0% |
| !!! | CATATCAATATATGTACTTT+TGG | - | chr8_1:67491545-67491564 | Msa1209080:three_prime_UTR | 20.0% |
| !! | ATTCTAGATTACTAAAGTAT+AGG | + | chr8_1:67491578-67491597 | None:intergenic | 20.0% |
| !!! | TACTTTAGTAATCTAGAATT+CGG | - | chr8_1:67491579-67491598 | Msa1209080:three_prime_UTR | 20.0% |
| !! | AAATATGACGAGAATTATTT+CGG | - | chr8_1:67491616-67491635 | Msa1209080:three_prime_UTR | 20.0% |
| !! | GAAAGGAAAAAAAAAAACAT+AGG | + | chr8_1:67491713-67491732 | None:intergenic | 20.0% |
| !! | ACAAAAAACACAATCAAATA+TGG | + | chr8_1:67491735-67491754 | None:intergenic | 20.0% |
| !! | ACATGATTATTATGTTTAGT+TGG | + | chr8_1:67492041-67492060 | None:intergenic | 20.0% |
| !! | TTTCACTAAATCAAGATTAT+GGG | + | chr8_1:67492065-67492084 | None:intergenic | 20.0% |
| !!! | TTTTCACTAAATCAAGATTA+TGG | + | chr8_1:67492066-67492085 | None:intergenic | 20.0% |
| !!! | TAGTGATTATGTTAGTTTTT+AGG | - | chr8_1:67492282-67492301 | Msa1209080:intron | 20.0% |
| !!! | AGTGATTATGTTAGTTTTTA+GGG | - | chr8_1:67492283-67492302 | Msa1209080:intron | 20.0% |
| !! | TTAAACTCAAAATGAGTTAA+GGG | + | chr8_1:67492348-67492367 | None:intergenic | 20.0% |
| !!! | TAAGAATCCACTTTTTTTAT+AGG | - | chr8_1:67492365-67492384 | Msa1209080:intron | 20.0% |
| !!! | TATTTTGCCTATAAAAAAAG+TGG | + | chr8_1:67492375-67492394 | None:intergenic | 20.0% |
| !! | TCAAAATTTGCATTGAAATA+TGG | + | chr8_1:67492589-67492608 | None:intergenic | 20.0% |
| !!! | AAGTTTAAGTTTGTTTTTGT+GGG | + | chr8_1:67492733-67492752 | None:intergenic | 20.0% |
| !!! | TAAGTTTAAGTTTGTTTTTG+TGG | + | chr8_1:67492734-67492753 | None:intergenic | 20.0% |
| !! | TGAGAAATGTATATATTGTT+TGG | + | chr8_1:67492772-67492791 | None:intergenic | 20.0% |
| !! | TAGTAGTAATATAATGAAAG+AGG | + | chr8_1:67493224-67493243 | None:intergenic | 20.0% |
| !! | TTATATTACTACTACTAAAG+AGG | - | chr8_1:67493230-67493249 | Msa1209080:intron | 20.0% |
| !!! | CATTTTTCGGTTTTTAATTT+CGG | + | chr8_1:67493324-67493343 | None:intergenic | 20.0% |
| !!! | ACTAATTTGATCTTTTTAGA+CGG | - | chr8_1:67493376-67493395 | Msa1209080:intron | 20.0% |
| !!! | TTTTTTGGTTACATTCAAAA+TGG | + | chr8_1:67493508-67493527 | None:intergenic | 20.0% |
| !! | ACCAAAAAAAAGTTTCAATT+TGG | - | chr8_1:67493519-67493538 | Msa1209080:intron | 20.0% |
| !!! | TCCAAATTGAAACTTTTTTT+TGG | + | chr8_1:67493523-67493542 | None:intergenic | 20.0% |
| !! | GTTGCAAAAAATAAATTTGA+GGG | + | chr8_1:67493640-67493659 | None:intergenic | 20.0% |
| !! | AGTTGCAAAAAATAAATTTG+AGG | + | chr8_1:67493641-67493660 | None:intergenic | 20.0% |
| !! | GATAAATGTAAAGTAATTCA+AGG | + | chr8_1:67493687-67493706 | None:intergenic | 20.0% |
| !!! | TTTACATTTATCTCACTTTT+AGG | - | chr8_1:67493695-67493714 | Msa1209080:intron | 20.0% |
| !!! | TCATTCAAAATAATTTTTGG+CGG | - | chr8_1:67493742-67493761 | Msa1209080:intron | 20.0% |
| !! | ATAACAATCAATTACAACAA+TGG | + | chr8_1:67493962-67493981 | None:intergenic | 20.0% |
| !! | TATTAATTAGGCATATAACA+TGG | + | chr8_1:67494228-67494247 | None:intergenic | 20.0% |
| ! | AAACACAATCAAATATGGAA+AGG | + | chr8_1:67491730-67491749 | None:intergenic | 25.0% |
| ! | GTAGGTATTCATGATAATAA+TGG | + | chr8_1:67491758-67491777 | None:intergenic | 25.0% |
| ! | CCTATAACAAGAATTGAAAT+TGG | + | chr8_1:67492142-67492161 | None:intergenic | 25.0% |
| !! | CCAATTTCAATTCTTGTTAT+AGG | - | chr8_1:67492139-67492158 | Msa1209080:intron | 25.0% |
| !! | AATTCTTGTTATAGGATTGT+TGG | - | chr8_1:67492147-67492166 | Msa1209080:intron | 25.0% |
| ! | CTTAAACTCAAAATGAGTTA+AGG | + | chr8_1:67492349-67492368 | None:intergenic | 25.0% |
| ! | TAGGCAAAATATTAGTAAGT+TGG | - | chr8_1:67492384-67492403 | Msa1209080:intron | 25.0% |
| !!! | AAATCAAAAGTGCTTAAAGT+AGG | + | chr8_1:67492448-67492467 | None:intergenic | 25.0% |
| !! | TCTTTGCTTGTTAACAATTT+AGG | - | chr8_1:67493006-67493025 | Msa1209080:intron | 25.0% |
| !!! | TAGTGAGAAAGTTCATTTTT+CGG | + | chr8_1:67493337-67493356 | None:intergenic | 25.0% |
| !! | AAAAGTTTCAATTTGGAATG+TGG | - | chr8_1:67493526-67493545 | Msa1209080:intron | 25.0% |
| !! | TTTAAATCTTCTATGGCTTT+TGG | - | chr8_1:67493824-67493843 | Msa1209080:intron | 25.0% |
| ! | ACATTAACAGTTACACATTA+AGG | + | chr8_1:67494263-67494282 | None:intergenic | 25.0% |
| ! | ATTAACCATCCAAAATACAA+AGG | + | chr8_1:67494389-67494408 | None:intergenic | 25.0% |
| ! | AAACAAGCAAATGGTTTGTA+TGG | + | chr8_1:67491383-67491402 | None:intergenic | 30.0% |
| GATACTATTAGAAGTAGTCA+TGG | + | chr8_1:67491443-67491462 | None:intergenic | 30.0% | |
| AAAAAAAAAACATAGGGCTG+TGG | + | chr8_1:67491706-67491725 | None:intergenic | 30.0% | |
| ! | CTTAATAAAAACCCCTTTTG+AGG | + | chr8_1:67491780-67491799 | None:intergenic | 30.0% |
| ! | AAGGGGTTTTTATTAAGCAT+AGG | - | chr8_1:67491783-67491802 | Msa1209080:intron | 30.0% |
| GAATGATCTTGAAATTGAAC+AGG | - | chr8_1:67491839-67491858 | Msa1209080:intron | 30.0% | |
| !! | TTGAACTTTGAAACCATCTT+TGG | - | chr8_1:67491908-67491927 | Msa1209080:intron | 30.0% |
| !! | TGAACTTTGAAACCATCTTT+GGG | - | chr8_1:67491909-67491928 | Msa1209080:intron | 30.0% |
| ACTAAACATAATCCCAAAGA+TGG | + | chr8_1:67491924-67491943 | None:intergenic | 30.0% | |
| TGTTTAGTATGAACTTGAGA+TGG | - | chr8_1:67491936-67491955 | Msa1209080:intron | 30.0% | |
| AATAACTATAGATACTTCGG+TGG | - | chr8_1:67492086-67492105 | Msa1209080:intron | 30.0% | |
| ! | TTGTTATAGGATTGTTGGTT+GGG | - | chr8_1:67492152-67492171 | Msa1209080:intron | 30.0% |
| ATTATCCAATCAAGATCAGA+TGG | + | chr8_1:67492653-67492672 | None:intergenic | 30.0% | |
| TTGATTGGATAATCTAGATG+TGG | - | chr8_1:67492660-67492679 | Msa1209080:CDS | 30.0% | |
| !!! | AAGTTTGTTTTTGTGGGATT+TGG | + | chr8_1:67492727-67492746 | None:intergenic | 30.0% |
| TTGATGAACAAGTGTATCTT+TGG | + | chr8_1:67493775-67493794 | None:intergenic | 30.0% | |
| !! | TTTGATGATGAAGAGGTATA+AGG | + | chr8_1:67494046-67494065 | None:intergenic | 30.0% |
| GAGAACATAACATAACATAG+TGG | + | chr8_1:67494201-67494220 | None:intergenic | 30.0% | |
| CAAAATACAAAGGAAGCAAT+TGG | + | chr8_1:67494379-67494398 | None:intergenic | 30.0% | |
| ! | CAATTGCTTCCTTTGTATTT+TGG | - | chr8_1:67494377-67494396 | Msa1209080:five_prime_UTR | 30.0% |
| TGGTTAATTACTATGCACTA+TGG | - | chr8_1:67494401-67494420 | Msa1209080:five_prime_UTR | 30.0% | |
| AATAAATGTCTCAGTTGCAG+AGG | - | chr8_1:67491265-67491284 | Msa1209080:three_prime_UTR | 35.0% | |
| ! | GCAAATGGTTTGTATGGTTA+AGG | + | chr8_1:67491377-67491396 | None:intergenic | 35.0% |
| TGACGAGAATTATTTCGGTT+AGG | - | chr8_1:67491621-67491640 | Msa1209080:exon | 35.0% | |
| TCATGAATACCTACCTCAAA+AGG | - | chr8_1:67491764-67491783 | Msa1209080:intron | 35.0% | |
| CATGAATACCTACCTCAAAA+GGG | - | chr8_1:67491765-67491784 | Msa1209080:intron | 35.0% | |
| ATGAATACCTACCTCAAAAG+GGG | - | chr8_1:67491766-67491785 | Msa1209080:intron | 35.0% | |
| !!! | ATAAAAACCCCTTTTGAGGT+AGG | + | chr8_1:67491776-67491795 | None:intergenic | 35.0% |
| ! | CTTGTTATAGGATTGTTGGT+TGG | - | chr8_1:67492151-67492170 | Msa1209080:intron | 35.0% |
| !! | AAACCGAAAGTGCTTTAAGT+AGG | + | chr8_1:67492325-67492344 | None:intergenic | 35.0% |
| !! | TCAAAAGTGCTTAAAGTAGG+AGG | + | chr8_1:67492445-67492464 | None:intergenic | 35.0% |
| ! | TCTGAAGTATGTAGTTCGAA+TGG | + | chr8_1:67492483-67492502 | None:intergenic | 35.0% |
| TTGGATAATCTAGATGTGGT+TGG | - | chr8_1:67492664-67492683 | Msa1209080:CDS | 35.0% | |
| TTTAGTCCAGATGTTGACAA+TGG | + | chr8_1:67492846-67492865 | None:intergenic | 35.0% | |
| AAAGTAAACTAGTGAAGTGC+TGG | + | chr8_1:67492980-67492999 | None:intergenic | 35.0% | |
| ACTCTTCATTTCAGAAGACT+TGG | + | chr8_1:67493065-67493084 | None:intergenic | 35.0% | |
| !! | AAGTCTTCTGAAATGAAGAG+TGG | - | chr8_1:67493064-67493083 | Msa1209080:intron | 35.0% |
| CTGGAAAAGAGTGAATTGAA+GGG | + | chr8_1:67493094-67493113 | None:intergenic | 35.0% | |
| ACTGGAAAAGAGTGAATTGA+AGG | + | chr8_1:67493095-67493114 | None:intergenic | 35.0% | |
| AAATTGTCAGAGTTTCCTTG+TGG | + | chr8_1:67493133-67493152 | None:intergenic | 35.0% | |
| AGGGTTGAGATCAATAATAG+AGG | + | chr8_1:67493621-67493640 | None:intergenic | 35.0% | |
| !!! | CAAAATAATTTTTGGCGGTG+CGG | - | chr8_1:67493747-67493766 | Msa1209080:intron | 35.0% |
| TTCAAAGGTTTCTTGAGAAG+AGG | - | chr8_1:67493892-67493911 | Msa1209080:intron | 35.0% | |
| TCTAAACATGACATGTTGCT+AGG | + | chr8_1:67493935-67493954 | None:intergenic | 35.0% | |
| TACATGAATGCACATGCTAT+TGG | + | chr8_1:67494156-67494175 | None:intergenic | 35.0% | |
| ATTAGGCATATAACATGGTG+TGG | + | chr8_1:67494223-67494242 | None:intergenic | 35.0% | |
| !! | TGCTTCCTTTGTATTTTGGA+TGG | - | chr8_1:67494381-67494400 | Msa1209080:five_prime_UTR | 35.0% |
| CTGACTTCTAAGCATAACAA+TGG | + | chr8_1:67494485-67494504 | None:intergenic | 35.0% | |
| TGTACTTGCAACTCTCTCAT+TGG | + | chr8_1:67491313-67491332 | None:intergenic | 40.0% | |
| GGTAAGCACAACAAGTTTCT+TGG | - | chr8_1:67491860-67491879 | Msa1209080:CDS | 40.0% | |
| ! | TTGTTGTCATGTTGGTTGAG+AGG | + | chr8_1:67492216-67492235 | None:intergenic | 40.0% |
| ! | GTAGGTTCTTGTTGTCATGT+TGG | + | chr8_1:67492224-67492243 | None:intergenic | 40.0% |
| ! | CCTCCTACTTAAAGCACTTT+CGG | - | chr8_1:67492319-67492338 | Msa1209080:intron | 40.0% |
| ! | GGAAGCATGTGTGTATATGA+TGG | - | chr8_1:67492909-67492928 | Msa1209080:intron | 40.0% |
| TGATGGAATTCCTGCAGAAA+AGG | - | chr8_1:67492926-67492945 | Msa1209080:intron | 40.0% | |
| GGTGCATGAGATAATGATGA+TGG | - | chr8_1:67493027-67493046 | Msa1209080:intron | 40.0% | |
| CATTTCAGAAGACTTGGCAT+TGG | + | chr8_1:67493059-67493078 | None:intergenic | 40.0% | |
| AGTTTCCTTGTGGAGAAGAA+GGG | + | chr8_1:67493123-67493142 | None:intergenic | 40.0% | |
| TTCTTGAGAAGAGGAGAATC+AGG | - | chr8_1:67493901-67493920 | Msa1209080:intron | 40.0% | |
| !!! | AGCTGCTTTTGATGATGAAG+AGG | + | chr8_1:67494053-67494072 | None:intergenic | 40.0% |
| TTGAGGGCAAATAGTACTGT+TGG | - | chr8_1:67494113-67494132 | Msa1209080:intron | 40.0% | |
| ATAGTACTGTTGGTGTGAAG+TGG | - | chr8_1:67494123-67494142 | Msa1209080:intron | 40.0% | |
| CTGACTTCTAAGCATAACAG+TGG | + | chr8_1:67494297-67494316 | None:intergenic | 40.0% | |
| ! | CTCATTGGTTGTGTTCTGGT+GGG | + | chr8_1:67491298-67491317 | None:intergenic | 45.0% |
| ! | TCTCATTGGTTGTGTTCTGG+TGG | + | chr8_1:67491299-67491318 | None:intergenic | 45.0% |
| ! | CTCTCTCATTGGTTGTGTTC+TGG | + | chr8_1:67491302-67491321 | None:intergenic | 45.0% |
| AGCATTTCTCTGCTGCTAAC+TGG | - | chr8_1:67491506-67491525 | Msa1209080:three_prime_UTR | 45.0% | |
| ! | GTGCTTTAAGTAGGAGGTCT+AGG | + | chr8_1:67492316-67492335 | None:intergenic | 45.0% |
| !! | CCGAAAGTGCTTTAAGTAGG+AGG | + | chr8_1:67492322-67492341 | None:intergenic | 45.0% |
| GTGCTTAAAGTAGGAGGTCT+GGG | + | chr8_1:67492439-67492458 | None:intergenic | 45.0% | |
| AGTGCTTAAAGTAGGAGGTC+TGG | + | chr8_1:67492440-67492459 | None:intergenic | 45.0% | |
| TAGACACAGTCAACCACATC+CGG | - | chr8_1:67492539-67492558 | Msa1209080:intron | 45.0% | |
| CTTATCGTGATCAGACAGTC+CGG | + | chr8_1:67492561-67492580 | None:intergenic | 45.0% | |
| CCAATCAAGATCAGATGGTC+TGG | + | chr8_1:67492648-67492667 | None:intergenic | 45.0% | |
| CCAGACCATCTGATCTTGAT+TGG | - | chr8_1:67492645-67492664 | Msa1209080:CDS | 45.0% | |
| ! | GCAGTCACAAGGTTTGTTTG+TGG | - | chr8_1:67492690-67492709 | Msa1209080:CDS | 45.0% |
| ATGTTGACAATGGCCTGAAG+GGG | + | chr8_1:67492836-67492855 | None:intergenic | 45.0% | |
| GATGTTGACAATGGCCTGAA+GGG | + | chr8_1:67492837-67492856 | None:intergenic | 45.0% | |
| AGATGTTGACAATGGCCTGA+AGG | + | chr8_1:67492838-67492857 | None:intergenic | 45.0% | |
| TTCAGGCCATTGTCAACATC+TGG | - | chr8_1:67492837-67492856 | Msa1209080:CDS | 45.0% | |
| TGGCAAACTGAGTTGTACCA+GGG | + | chr8_1:67492878-67492897 | None:intergenic | 45.0% | |
| ATGGCAAACTGAGTTGTACC+AGG | + | chr8_1:67492879-67492898 | None:intergenic | 45.0% | |
| CAGTTTGCCATCCTCTACAA+TGG | - | chr8_1:67492888-67492907 | Msa1209080:CDS | 45.0% | |
| CATGCTTCCATTGTAGAGGA+TGG | + | chr8_1:67492898-67492917 | None:intergenic | 45.0% | |
| CACACATGCTTCCATTGTAG+AGG | + | chr8_1:67492902-67492921 | None:intergenic | 45.0% | |
| ! | GCAGTGTTTACCTTTTCTGC+AGG | + | chr8_1:67492939-67492958 | None:intergenic | 45.0% |
| GTTTCCTTGTGGAGAAGAAG+GGG | + | chr8_1:67493122-67493141 | None:intergenic | 45.0% | |
| GAGTTTCCTTGTGGAGAAGA+AGG | + | chr8_1:67493124-67493143 | None:intergenic | 45.0% | |
| AGCAGGAAAACCAACTGATG+GGG | + | chr8_1:67493164-67493183 | None:intergenic | 45.0% | |
| CAGCAGGAAAACCAACTGAT+GGG | + | chr8_1:67493165-67493184 | None:intergenic | 45.0% | |
| CTGAGAAGAGTTCCATTTGC+AGG | - | chr8_1:67493185-67493204 | Msa1209080:intron | 45.0% | |
| AGTTCCATTTGCAGGATGCA+AGG | - | chr8_1:67493193-67493212 | Msa1209080:intron | 45.0% | |
| CCTCAAGTGGCATCATTACT+GGG | + | chr8_1:67494099-67494118 | None:intergenic | 45.0% | |
| ! | CCAGTAATGATGCCACTTGA+GGG | - | chr8_1:67494097-67494116 | Msa1209080:intron | 45.0% |
| CAGTACTATTTGCCCTCAAG+TGG | + | chr8_1:67494112-67494131 | None:intergenic | 45.0% | |
| ATGTCTCAGTTGCAGAGGAG+AGG | - | chr8_1:67491270-67491289 | Msa1209080:three_prime_UTR | 50.0% | |
| TGTCTCAGTTGCAGAGGAGA+GGG | - | chr8_1:67491271-67491290 | Msa1209080:three_prime_UTR | 50.0% | |
| TCTGCTAGCAACAGCAGTCT+TGG | + | chr8_1:67491999-67492018 | None:intergenic | 50.0% | |
| ! | TAGGAGGTCTGGGATTCGAA+TGG | + | chr8_1:67492429-67492448 | None:intergenic | 50.0% |
| GGACTAAATGCAATGACCCC+TGG | - | chr8_1:67492858-67492877 | Msa1209080:CDS | 50.0% | |
| GGCAAACTGAGTTGTACCAG+GGG | + | chr8_1:67492877-67492896 | None:intergenic | 50.0% | |
| AAACCAACTGATGGGGGAGA+AGG | + | chr8_1:67493157-67493176 | None:intergenic | 50.0% | |
| GCAGGAAAACCAACTGATGG+GGG | + | chr8_1:67493163-67493182 | None:intergenic | 50.0% | |
| GCAGCAGGAAAACCAACTGA+TGG | + | chr8_1:67493166-67493185 | None:intergenic | 50.0% | |
| ATGGAACTCTTCTCAGCAGC+AGG | + | chr8_1:67493181-67493200 | None:intergenic | 50.0% | |
| AGCACCTTGCATCCTGCAAA+TGG | + | chr8_1:67493200-67493219 | None:intergenic | 50.0% | |
| GTGACTGTCTGCGTGCTAAT+GGG | + | chr8_1:67493872-67493891 | None:intergenic | 50.0% | |
| AGTGACTGTCTGCGTGCTAA+TGG | + | chr8_1:67493873-67493892 | None:intergenic | 50.0% | |
| CACGCAGACAGTCACTTCAA+AGG | - | chr8_1:67493877-67493896 | Msa1209080:intron | 50.0% | |
| ! | CCCAGTAATGATGCCACTTG+AGG | - | chr8_1:67494096-67494115 | Msa1209080:intron | 50.0% |
| CCCTCAAGTGGCATCATTAC+TGG | + | chr8_1:67494100-67494119 | None:intergenic | 50.0% | |
| GTGATCAGACAGTCCGGATG+TGG | + | chr8_1:67492555-67492574 | None:intergenic | 55.0% | |
| CAATGGCCTGAAGGGGAAAG+AGG | + | chr8_1:67492829-67492848 | None:intergenic | 55.0% | |
| TGGAGAAGAAGGGGTGGTAC+TGG | + | chr8_1:67493113-67493132 | None:intergenic | 55.0% | |
| ACCACCCCTTCTTCTCCACA+AGG | - | chr8_1:67493115-67493134 | Msa1209080:intron | 55.0% | |
| TCCTTGTGGAGAAGAAGGGG+TGG | + | chr8_1:67493119-67493138 | None:intergenic | 55.0% | |
| TTGCCTTCTCCCCCATCAGT+TGG | - | chr8_1:67493151-67493170 | Msa1209080:intron | 55.0% | |
| GTGGTTGGCACGCAGTCACA+AGG | - | chr8_1:67492679-67492698 | Msa1209080:CDS | 60.0% | |
| GCCTTGCCTCTTTCCCCTTC+AGG | - | chr8_1:67492820-67492839 | Msa1209080:CDS | 60.0% | |
| GCCTGAAGGGGAAAGAGGCA+AGG | + | chr8_1:67492824-67492843 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 67491256 | 67494506 | 67491256 | ID=Msa1209080;Name=Msa1209080 |
| chr8_1 | mRNA | 67491256 | 67494506 | 67491256 | ID=Msa1209080-mRNA-1;Parent=Msa1209080;Name=Msa1209080-mRNA-1;_AED=0.02;_eAED=0.02;_QI=186|1|1|1|1|1|5|380|178 |
| chr8_1 | exon | 67491256 | 67491735 | 67491256 | ID=Msa1209080-mRNA-1:exon:22337;Parent=Msa1209080-mRNA-1 |
| chr8_1 | exon | 67491840 | 67491897 | 67491840 | ID=Msa1209080-mRNA-1:exon:22336;Parent=Msa1209080-mRNA-1 |
| chr8_1 | exon | 67492548 | 67492734 | 67492548 | ID=Msa1209080-mRNA-1:exon:22335;Parent=Msa1209080-mRNA-1 |
| chr8_1 | exon | 67492815 | 67492920 | 67492815 | ID=Msa1209080-mRNA-1:exon:22334;Parent=Msa1209080-mRNA-1 |
| chr8_1 | exon | 67494235 | 67494506 | 67494235 | ID=Msa1209080-mRNA-1:exon:22333;Parent=Msa1209080-mRNA-1 |
| chr8_1 | five_prime_UTR | 67494321 | 67494506 | 67494321 | ID=Msa1209080-mRNA-1:five_prime_utr;Parent=Msa1209080-mRNA-1 |
| chr8_1 | CDS | 67494235 | 67494320 | 67494235 | ID=Msa1209080-mRNA-1:cds;Parent=Msa1209080-mRNA-1 |
| chr8_1 | CDS | 67492815 | 67492920 | 67492815 | ID=Msa1209080-mRNA-1:cds;Parent=Msa1209080-mRNA-1 |
| chr8_1 | CDS | 67492548 | 67492734 | 67492548 | ID=Msa1209080-mRNA-1:cds;Parent=Msa1209080-mRNA-1 |
| chr8_1 | CDS | 67491840 | 67491897 | 67491840 | ID=Msa1209080-mRNA-1:cds;Parent=Msa1209080-mRNA-1 |
| chr8_1 | CDS | 67491636 | 67491735 | 67491636 | ID=Msa1209080-mRNA-1:cds;Parent=Msa1209080-mRNA-1 |
| chr8_1 | three_prime_UTR | 67491256 | 67491635 | 67491256 | ID=Msa1209080-mRNA-1:three_prime_utr;Parent=Msa1209080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
