AlfalfaGEDB | Msa1209080

M. sativa cultivar zhongmu-4 / Msa1209080

KEGG: K13464
GO: GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141
PFAM: PF06200.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1209080	XP_003609915.1	96.629	178	6	0	1	178	1	178	3.85e-122	352

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1209080	sp\|Q9C5K8\|TIF3B_ARATH	40.000	120	66	4	45	162	57	172	3.24e-17	78.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa1209080	TF	Tify

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1209080	MtrunA17_Chr4g0069721	96.629	178	6	0	1	178	1	178	3.54e-126	352
Msa1209080	MtrunA17_Chr2g0302041	56.463	147	59	3	25	168	38	182	5.96e-47	152
Msa1209080	MtrunA17_Chr5g0399851	34.848	132	69	2	41	168	17	135	8.30e-18	75.9
Msa1209080	MtrunA17_Chr5g0399861	30.328	122	70	2	41	162	40	146	9.07e-13	63.2
Msa1209080	MtrunA17_Chr5g0399881	30.081	123	71	2	41	163	40	147	9.06e-12	60.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1209080	AT5G20900.1	40.000	120	66	4	45	162	57	172	3.29e-18	78.2
Msa1209080	AT3G43440.1	35.833	120	59	3	44	163	130	231	7.98e-16	72.8
Msa1209080	AT3G43440.2	32.824	131	67	4	42	172	42	151	2.84e-15	69.7
Msa1209080	AT1G19180.2	34.234	111	65	1	43	153	58	160	7.40e-12	61.2
Msa1209080	AT1G19180.1	34.234	111	65	1	43	153	124	226	2.42e-11	60.8
Msa1209080	AT1G19180.3	34.234	111	65	1	43	153	124	226	2.42e-11	60.8

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Find 70 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGCAAATGGTTTGTA+TGG	0.336684	8_1:+67494360	None:intergenic
AAATTGTCAGAGTTTCCTTG+TGG	0.648404	8_1:+67492610	None:intergenic
AAGTCTTCTGAAATGAAGAG+TGG	0.618241	8_1:-67492676	Msa1209080:CDS
AATAAATGTCTCAGTTGCAG+AGG	0.606207	8_1:-67494475	Msa1209080:five_prime_UTR
AATTAAATTAAACAAGCAAA+TGG	0.445337	8_1:+67494351	None:intergenic
ACATTAACAGTTACACATTA+AGG	0.272159	8_1:+67491480	None:intergenic
ACCACCCCTTCTTCTCCACA+AGG	0.677252	8_1:-67492625	Msa1209080:CDS
ACTCTTCATTTCAGAAGACT+TGG	0.497623	8_1:+67492678	None:intergenic
ACTGGAAAAGAGTGAATTGA+AGG	0.506999	8_1:+67492648	None:intergenic
AGCACCTTGCATCCTGCAAA+TGG	0.473835	8_1:+67492543	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATACTATTAGAAGTAGTCA+TGG	+	chr8_1:67491443-67491462	None:intergenic	30.0%
AAAAAAAAAACATAGGGCTG+TGG	+	chr8_1:67491706-67491725	None:intergenic	30.0%
GAATGATCTTGAAATTGAAC+AGG	-	chr8_1:67491839-67491858	Msa1209080:intron	30.0%
ACTAAACATAATCCCAAAGA+TGG	+	chr8_1:67491924-67491943	None:intergenic	30.0%
TGTTTAGTATGAACTTGAGA+TGG	-	chr8_1:67491936-67491955	Msa1209080:intron	30.0%
AATAACTATAGATACTTCGG+TGG	-	chr8_1:67492086-67492105	Msa1209080:intron	30.0%
ATTATCCAATCAAGATCAGA+TGG	+	chr8_1:67492653-67492672	None:intergenic	30.0%
TTGATTGGATAATCTAGATG+TGG	-	chr8_1:67492660-67492679	Msa1209080:CDS	30.0%
TTGATGAACAAGTGTATCTT+TGG	+	chr8_1:67493775-67493794	None:intergenic	30.0%
GAGAACATAACATAACATAG+TGG	+	chr8_1:67494201-67494220	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	67491256	67494506	67491256	ID=Msa1209080;Name=Msa1209080
chr8_1	mRNA	67491256	67494506	67491256	ID=Msa1209080-mRNA-1;Parent=Msa1209080;Name=Msa1209080-mRNA-1;_AED=0.02;_eAED=0.02;_QI=186\|1\|1\|1\|1\|1\|5\|380\|178
chr8_1	exon	67491256	67491735	67491256	ID=Msa1209080-mRNA-1:exon:22337;Parent=Msa1209080-mRNA-1
chr8_1	exon	67491840	67491897	67491840	ID=Msa1209080-mRNA-1:exon:22336;Parent=Msa1209080-mRNA-1
chr8_1	exon	67492548	67492734	67492548	ID=Msa1209080-mRNA-1:exon:22335;Parent=Msa1209080-mRNA-1
chr8_1	exon	67492815	67492920	67492815	ID=Msa1209080-mRNA-1:exon:22334;Parent=Msa1209080-mRNA-1
chr8_1	exon	67494235	67494506	67494235	ID=Msa1209080-mRNA-1:exon:22333;Parent=Msa1209080-mRNA-1
chr8_1	five_prime_UTR	67494321	67494506	67494321	ID=Msa1209080-mRNA-1:five_prime_utr;Parent=Msa1209080-mRNA-1
chr8_1	CDS	67494235	67494320	67494235	ID=Msa1209080-mRNA-1:cds;Parent=Msa1209080-mRNA-1
chr8_1	CDS	67492815	67492920	67492815	ID=Msa1209080-mRNA-1:cds;Parent=Msa1209080-mRNA-1
chr8_1	CDS	67492548	67492734	67492548	ID=Msa1209080-mRNA-1:cds;Parent=Msa1209080-mRNA-1
chr8_1	CDS	67491840	67491897	67491840	ID=Msa1209080-mRNA-1:cds;Parent=Msa1209080-mRNA-1
chr8_1	CDS	67491636	67491735	67491636	ID=Msa1209080-mRNA-1:cds;Parent=Msa1209080-mRNA-1
chr8_1	three_prime_UTR	67491256	67491635	67491256	ID=Msa1209080-mRNA-1:three_prime_utr;Parent=Msa1209080-mRNA-1

Gene Sequence

>Msa1209080

ATGACTACTTCTAATAGTATCAATAATGTTGACATTAACAGCATCAGTGATCAAGAGTCAGTGAAGCATTTCTCTGCTGCTAACTGGCCATTGTCAACATCTGGACTAAATGCAATGACCCCTGGTACAACTCAGTTTGCCATCCTCTACAATGGAAGCATGTGTGTATATGATGGAATTCCTGCAGAAAAGGTGCATGAGATAATGATGATGGCTTCTGCCAATGCCAAGTCTTCTGAAATGAAGAGTGGAATTCCCTTCAATTCACTCTTTTCCAGTACCACCCCTTCTTCTCCACAAGGAAACTCTGACAATTTGCCTTCTCCCCCATCAGTTGGTTTTCCTGCTGCTGAGAAGAGTTCCATTTGCAGGATGCAAGAATTCCCATTAGCACGCAGACAGTCACTTCAAAGGTTTCTTGAGAAGAGGAGAATCAGGGTACGTAGCAAAGCACCTTATACCTCTTCATCATCAAAAGCAGCTAACAACATTGATAACGATTTCAGCCCAGTAATGATGCCACTTGAGGGCAAATAG

Protein sequence

>Msa1209080

MTTSNSINNVDINSISDQESVKHFSAANWPLSTSGLNAMTPGTTQFAILYNGSMCVYDGIPAEKVHEIMMMASANAKSSEMKSGIPFNSLFSSTTPSSPQGNSDNLPSPPSVGFPAAEKSSICRMQEFPLARRQSLQRFLEKRRIRVRSKAPYTSSSSKAANNIDNDFSPVMMPLEGK*