AlfalfaGEDB | Msa1212110

M. sativa cultivar zhongmu-4 / Msa1212110

KEGG: K04454|K09260
GO: GO:0001558 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009889 GO:0010152 GO:0010468 GO:0010556 GO:0010769 GO:0019219 GO:0019222 GO:0021700 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044464 GO:0045595 GO:0048229 GO:0048638 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051252 GO:0051510 GO:0060255 GO:0060284 GO:0065007 GO:0080090 GO:0080092 GO:0140110 GO:1903506 GO:2000112 GO:2000241 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1212110	XP_024637092.1	90.986	355	7	1	1	330	1	355	0.0	655

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1212110	sp\|Q7X9I0\|AGL65_ARATH	48.173	301	111	7	1	270	1	287	1.95e-81	255

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa1212110	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1212110	MtrunA17_Chr4g0060841	90.730	356	7	1	1	330	1	356	0.0	655
Msa1212110	MtrunA17_Chr3g0134451	35.211	213	106	8	1	191	1	203	2.56e-26	106
Msa1212110	MtrunA17_Chr5g0417661	70.149	67	20	0	1	67	56	122	2.80e-25	98.6
Msa1212110	MtrunA17_Chr5g0417671	81.132	53	10	0	59	111	26	78	4.06e-23	91.7
Msa1212110	MtrunA17_Chr5g0425191	62.295	61	23	0	1	61	1	61	2.33e-21	87.4
Msa1212110	MtrunA17_Chr4g0044071	63.934	61	22	0	1	61	1	61	1.23e-20	85.9
Msa1212110	MtrunA17_Chr5g0427401	39.456	147	79	4	1	143	1	141	2.68e-18	82.4
Msa1212110	MtrunA17_Chr1g0159661	39.423	104	63	0	1	104	1	104	4.57e-17	77.8
Msa1212110	MtrunA17_Chr3g0125241	62.264	53	20	0	1	53	26	78	4.32e-16	75.9
Msa1212110	MtrunA17_Chr1g0173161	58.491	53	22	0	1	53	1	53	7.86e-16	71.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1212110	AT1G18750.4	48.173	301	111	7	1	270	1	287	1.17e-82	255
Msa1212110	AT1G18750.1	48.173	301	111	7	1	270	1	287	1.98e-82	255
Msa1212110	AT2G03060.3	45.614	285	105	6	1	250	1	270	4.25e-71	226
Msa1212110	AT2G03060.7	45.614	285	105	6	1	250	1	270	4.25e-71	226
Msa1212110	AT2G03060.1	45.614	285	105	6	1	250	1	270	4.25e-71	226
Msa1212110	AT2G03060.2	45.614	285	105	6	1	250	1	270	5.20e-71	226
Msa1212110	AT1G18750.3	42.216	334	115	11	1	270	1	320	6.12e-68	219
Msa1212110	AT1G69540.1	39.088	307	131	8	1	266	1	292	1.17e-57	190
Msa1212110	AT1G69540.2	35.526	380	173	13	1	329	1	359	1.21e-57	191
Msa1212110	AT1G18750.2	40.784	255	106	7	47	270	1	241	1.80e-51	174

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Find 77 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTACATGCTTACCCTA+TGG	0.529353	8_1:-71951836	None:intergenic
AACCAAAGTTTATGTCATTC+AGG	0.285801	8_1:+71951209	Msa1212110:CDS
AAGAATCTCAACCTTTGTCT+TGG	0.471192	8_1:+71951146	Msa1212110:CDS
AAGGGCAAAGTCATCCCTTC+TGG	0.405073	8_1:-71951106	None:intergenic
AATAACGTAGGCTTTCCTGT+TGG	0.623309	8_1:-71949248	None:intergenic
AATTCTACAAATGGCTCTTG+TGG	0.581991	8_1:+71951786	Msa1212110:CDS
ACAAATGGAAGACTCACTCA+GGG	0.670210	8_1:+71950791	Msa1212110:CDS
ACTTATTCGAAGCGGAAAAG+TGG	0.527998	8_1:+71949158	Msa1212110:CDS
ACTTCCTCAAGATCTTGTGG+AGG	0.620137	8_1:-71951657	None:intergenic
ACTTTGCCCTTAATGATGTC+TGG	0.425266	8_1:+71951118	Msa1212110:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTAAAGTGTGTAAAAGTCGA+AGG	+	chr8_1:71949571-71949590	Msa1212110:intron	30.0%
ATCATGATCCAATTTCTTGA+AGG	-	chr8_1:71949949-71949968	None:intergenic	30.0%
TGTAAAGATACAAGATTTCC+TGG	+	chr8_1:71949968-71949987	Msa1212110:CDS	30.0%
GTAAAGATACAAGATTTCCT+GGG	+	chr8_1:71949969-71949988	Msa1212110:CDS	30.0%
AGAATCTTAAGCTGGTAATT+AGG	+	chr8_1:71950144-71950163	Msa1212110:intron	30.0%
CAATTGAACTCATAACACTT+TGG	-	chr8_1:71950173-71950192	None:intergenic	30.0%
ATACAAAATTGGTAAGGTAG+AGG	-	chr8_1:71950358-71950377	None:intergenic	30.0%
AAGCACATACAAAATTGGTA+AGG	-	chr8_1:71950364-71950383	None:intergenic	30.0%
TTGCAAAGCACATACAAAAT+TGG	-	chr8_1:71950369-71950388	None:intergenic	30.0%
CAATCGATTGTCTATACAAA+AGG	+	chr8_1:71950821-71950840	Msa1212110:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	71949101	71951854	71949101	ID=Msa1212110;Name=Msa1212110
chr8_1	mRNA	71949101	71951854	71949101	ID=Msa1212110-mRNA-1;Parent=Msa1212110;Name=Msa1212110-mRNA-1;_AED=0.08;_eAED=0.09;_QI=0\|0\|0\|1\|1\|1\|8\|0\|333
chr8_1	exon	71949101	71949285	71949101	ID=Msa1212110-mRNA-1:exon:24233;Parent=Msa1212110-mRNA-1
chr8_1	exon	71949652	71949711	71949652	ID=Msa1212110-mRNA-1:exon:24234;Parent=Msa1212110-mRNA-1
chr8_1	exon	71949796	71949814	71949796	ID=Msa1212110-mRNA-1:exon:24235;Parent=Msa1212110-mRNA-1
chr8_1	exon	71949933	71949997	71949933	ID=Msa1212110-mRNA-1:exon:24236;Parent=Msa1212110-mRNA-1
chr8_1	exon	71950746	71950842	71950746	ID=Msa1212110-mRNA-1:exon:24237;Parent=Msa1212110-mRNA-1
chr8_1	exon	71950971	71951018	71950971	ID=Msa1212110-mRNA-1:exon:24238;Parent=Msa1212110-mRNA-1
chr8_1	exon	71951103	71951230	71951103	ID=Msa1212110-mRNA-1:exon:24239;Parent=Msa1212110-mRNA-1
chr8_1	exon	71951455	71951854	71951455	ID=Msa1212110-mRNA-1:exon:24240;Parent=Msa1212110-mRNA-1
chr8_1	CDS	71949101	71949285	71949101	ID=Msa1212110-mRNA-1:cds;Parent=Msa1212110-mRNA-1
chr8_1	CDS	71949652	71949711	71949652	ID=Msa1212110-mRNA-1:cds;Parent=Msa1212110-mRNA-1
chr8_1	CDS	71949796	71949814	71949796	ID=Msa1212110-mRNA-1:cds;Parent=Msa1212110-mRNA-1
chr8_1	CDS	71949933	71949997	71949933	ID=Msa1212110-mRNA-1:cds;Parent=Msa1212110-mRNA-1
chr8_1	CDS	71950746	71950842	71950746	ID=Msa1212110-mRNA-1:cds;Parent=Msa1212110-mRNA-1
chr8_1	CDS	71950971	71951018	71950971	ID=Msa1212110-mRNA-1:cds;Parent=Msa1212110-mRNA-1
chr8_1	CDS	71951103	71951230	71951103	ID=Msa1212110-mRNA-1:cds;Parent=Msa1212110-mRNA-1
chr8_1	CDS	71951455	71951854	71951455	ID=Msa1212110-mRNA-1:cds;Parent=Msa1212110-mRNA-1

Gene Sequence

>Msa1212110

ATGGGGAGAGTTAAATTGAAGATAAAGAAATTGGAGAGCACAAGCAACCGACATGTGACTTATTCGAAGCGGAAAAGTGGGATCTTGAAGAAAGCAAAAGAGTTATCAATTCTATGTGATATAGATATTCTCCTTCTCATGTTTTCTCCAACAGGAAAGCCTACGTTATTACAGGGAGAACGAAGCAATATGGAGGAGATCATTGCAAAATTTGCCCAACTTAGCCCACAAGAAAGGGCTAAAAGGAAAATGGAAAGTCTTGAAGCACTGAAAAAAACCTTCAAGAAATTGGATCATGATGTAAAGATACAAGATTTCCTGGGTTCAAGTTATTGGAGTAATCTGGAGAAGATCAGTAACTTGGAACATCTTAGACAAATGGAAGACTCACTCAGGGAATCAATCAATCGATTGTCTATACAAAAGGAAAATCTCGAAAAGCACCAACTAATGTCACTTGAATGCGTTAACCAGTTACCAGAAGGGATGACTTTGCCCTTAATGATGTCTGGTCTACAAGAATCTCAACCTTTGTCTTGGCTTCTAAGTGGTGATAATCACCAGTTGATGTTACCTAGTGAACCAAAGTTTATGTCATTCAGTGACAATGTCAATAGAGATGTTGAGTGCTCAACCGACATTTCACTCCCAAGCTATTCTGGTTATACTGGGAACTGCAAACTGGAGGTGGGAAGCTCTCCACATGTCACTATTTTGGGTCAGGGAGGTGGTACCTTGAATGAGTTAAATGGAAATCCAAATCCTTACTTAAATGTGCAACAGTGTCAGCAGTTTGCATACCCTCCTCCACAAGATCTTGAGGAAGTGAAACATCACCAACCAATCAATAGCAAATCAAATAACGTGGACTACCAAGTTAATAACAATTATGATCTGCCAAAATCACTATTTGAAAATGGACACCAGTTCTGGAATTCTACAAATGGCTCTTGTGGTATTGCTATGTATAACGAGAATGGTTACCATAGGGTAAGCATGTAG

Protein sequence

>Msa1212110

MGRVKLKIKKLESTSNRHVTYSKRKSGILKKAKELSILCDIDILLLMFSPTGKPTLLQGERSNMEEIIAKFAQLSPQERAKRKMESLEALKKTFKKLDHDVKIQDFLGSSYWSNLEKISNLEHLRQMEDSLRESINRLSIQKENLEKHQLMSLECVNQLPEGMTLPLMMSGLQESQPLSWLLSGDNHQLMLPSEPKFMSFSDNVNRDVECSTDISLPSYSGYTGNCKLEVGSSPHVTILGQGGGTLNELNGNPNPYLNVQQCQQFAYPPPQDLEEVKHHQPINSKSNNVDYQVNNNYDLPKSLFENGHQFWNSTNGSCGIAMYNENGYHRVSM*