Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1217880 | sp|Q9XIB4|Y1475_ARATH | 37.931 | 116 | 70 | 2 | 15 | 130 | 34 | 147 | 4.32e-16 | 78.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1217880 | A0A396IHE6 | 92.901 | 324 | 23 | 0 | 1 | 324 | 1 | 324 | 0.0 | 627 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1217880 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1217880 | MtrunA17_Chr4g0067431 | 92.901 | 324 | 23 | 0 | 1 | 324 | 1 | 324 | 0.0 | 627 |
| Msa1217880 | MtrunA17_Chr1g0163221 | 63.720 | 328 | 90 | 7 | 1 | 324 | 1 | 303 | 8.42e-128 | 369 |
| Msa1217880 | MtrunA17_Chr6g0467351 | 64.103 | 234 | 72 | 2 | 1 | 231 | 1 | 225 | 6.54e-104 | 304 |
| Msa1217880 | MtrunA17_Chr1g0163061 | 63.019 | 265 | 52 | 3 | 1 | 219 | 1 | 265 | 3.03e-95 | 283 |
| Msa1217880 | MtrunA17_Chr6g0467361 | 67.816 | 87 | 28 | 0 | 233 | 319 | 8 | 94 | 9.54e-39 | 132 |
| Msa1217880 | MtrunA17_Chr1g0163071 | 29.808 | 312 | 187 | 11 | 31 | 324 | 2 | 299 | 7.72e-35 | 129 |
| Msa1217880 | MtrunA17_Chr3g0131891 | 32.039 | 309 | 185 | 11 | 9 | 311 | 13 | 302 | 1.67e-32 | 123 |
| Msa1217880 | MtrunA17_Chr1g0163131 | 31.746 | 315 | 183 | 13 | 10 | 310 | 13 | 309 | 2.80e-32 | 122 |
| Msa1217880 | MtrunA17_Chr7g0233561 | 29.452 | 292 | 190 | 7 | 13 | 297 | 16 | 298 | 4.12e-32 | 122 |
| Msa1217880 | MtrunA17_Chr8g0390841 | 28.165 | 316 | 206 | 9 | 13 | 320 | 37 | 339 | 1.32e-30 | 121 |
| Msa1217880 | MtrunA17_Chr1g0163251 | 29.618 | 314 | 189 | 11 | 15 | 325 | 9 | 293 | 7.08e-30 | 117 |
| Msa1217880 | MtrunA17_Chr3g0103181 | 31.373 | 306 | 167 | 11 | 13 | 311 | 10 | 279 | 1.01e-29 | 114 |
| Msa1217880 | MtrunA17_Chr1g0208771 | 26.198 | 313 | 202 | 11 | 20 | 319 | 1 | 297 | 4.64e-29 | 116 |
| Msa1217880 | MtrunA17_Chr1g0163261 | 28.920 | 287 | 178 | 9 | 15 | 299 | 9 | 271 | 2.42e-27 | 108 |
| Msa1217880 | MtrunA17_Chr1g0163181 | 28.797 | 316 | 196 | 12 | 17 | 324 | 11 | 305 | 5.54e-27 | 110 |
| Msa1217880 | MtrunA17_Chr3g0103151 | 38.411 | 151 | 85 | 5 | 13 | 158 | 10 | 157 | 4.32e-26 | 101 |
| Msa1217880 | MtrunA17_Chr1g0163231 | 27.393 | 303 | 179 | 10 | 15 | 310 | 9 | 277 | 4.83e-25 | 102 |
| Msa1217880 | MtrunA17_Chr1g0163201 | 28.519 | 270 | 175 | 8 | 30 | 297 | 18 | 271 | 1.20e-24 | 103 |
| Msa1217880 | MtrunA17_Chr3g0103191 | 28.740 | 254 | 152 | 9 | 13 | 264 | 10 | 236 | 3.63e-24 | 99.0 |
| Msa1217880 | MtrunA17_Chr1g0163101 | 33.133 | 166 | 95 | 5 | 10 | 167 | 12 | 169 | 1.36e-23 | 95.9 |
| Msa1217880 | MtrunA17_Chr7g0233571 | 43.925 | 107 | 59 | 1 | 13 | 119 | 8 | 113 | 2.94e-22 | 93.2 |
| Msa1217880 | MtrunA17_Chr3g0103171 | 27.972 | 286 | 177 | 8 | 30 | 311 | 5 | 265 | 1.13e-21 | 92.8 |
| Msa1217880 | MtrunA17_Chr7g0233541 | 27.458 | 295 | 199 | 8 | 31 | 319 | 2 | 287 | 3.11e-21 | 92.0 |
| Msa1217880 | MtrunA17_Chr7g0233521 | 25.850 | 294 | 188 | 7 | 31 | 319 | 2 | 270 | 2.42e-20 | 89.4 |
| Msa1217880 | MtrunA17_Chr1g0163081 | 36.290 | 124 | 68 | 4 | 31 | 147 | 6 | 125 | 4.26e-20 | 85.1 |
| Msa1217880 | MtrunA17_Chr6g0476181 | 33.333 | 162 | 97 | 6 | 31 | 191 | 2 | 153 | 4.16e-19 | 83.2 |
| Msa1217880 | MtrunA17_Chr1g0162161 | 34.722 | 144 | 82 | 5 | 31 | 167 | 4 | 142 | 4.50e-19 | 82.8 |
| Msa1217880 | MtrunA17_Chr1g0171611 | 25.083 | 303 | 174 | 9 | 15 | 310 | 9 | 265 | 7.64e-19 | 85.1 |
| Msa1217880 | MtrunA17_Chr7g0233531 | 27.551 | 294 | 183 | 10 | 31 | 319 | 2 | 270 | 1.48e-18 | 84.3 |
| Msa1217880 | MtrunA17_Chr1g0154131 | 26.606 | 327 | 181 | 14 | 13 | 316 | 182 | 472 | 2.66e-18 | 85.5 |
| Msa1217880 | MtrunA17_Chr1g0163121 | 33.333 | 129 | 75 | 4 | 29 | 150 | 9 | 133 | 4.58e-18 | 79.7 |
| Msa1217880 | MtrunA17_Chr5g0419201 | 30.519 | 154 | 97 | 3 | 15 | 160 | 16 | 167 | 8.40e-18 | 80.1 |
| Msa1217880 | MtrunA17_Chr1g0163191 | 37.815 | 119 | 66 | 4 | 15 | 132 | 9 | 120 | 3.33e-16 | 75.1 |
| Msa1217880 | MtrunA17_Chr1g0163241 | 35.099 | 151 | 75 | 5 | 15 | 153 | 15 | 154 | 6.08e-16 | 74.3 |
| Msa1217880 | MtrunA17_Chr1g0154151 | 27.097 | 310 | 177 | 12 | 16 | 297 | 13 | 301 | 7.58e-16 | 77.4 |
| Msa1217880 | MtrunA17_Chr1g0163141 | 31.056 | 161 | 96 | 5 | 29 | 183 | 9 | 160 | 4.70e-15 | 72.4 |
| Msa1217880 | MtrunA17_Chr5g0429931 | 27.273 | 275 | 151 | 11 | 30 | 304 | 10 | 235 | 6.19e-15 | 73.6 |
| Msa1217880 | MtrunA17_Chr3g0103201 | 27.572 | 243 | 145 | 9 | 74 | 311 | 4 | 220 | 7.09e-14 | 70.1 |
| Msa1217880 | MtrunA17_Chr3g0077461 | 31.977 | 172 | 103 | 6 | 14 | 174 | 236 | 404 | 1.18e-13 | 71.6 |
| Msa1217880 | MtrunA17_Chr1g0154191 | 26.190 | 336 | 179 | 14 | 16 | 297 | 22 | 342 | 3.63e-13 | 69.7 |
| Msa1217880 | MtrunA17_Chr1g0154171 | 25.076 | 327 | 193 | 11 | 28 | 316 | 35 | 347 | 6.58e-13 | 68.9 |
| Msa1217880 | MtrunA17_Chr3g0077411 | 25.329 | 304 | 169 | 12 | 1 | 297 | 251 | 503 | 1.16e-12 | 68.6 |
| Msa1217880 | MtrunA17_Chr3g0077411 | 23.373 | 338 | 210 | 10 | 14 | 311 | 24 | 352 | 1.19e-11 | 65.5 |
| Msa1217880 | MtrunA17_Chr3g0077451 | 24.354 | 271 | 147 | 10 | 29 | 299 | 10 | 222 | 1.29e-12 | 66.6 |
| Msa1217880 | MtrunA17_Chr1g0163161 | 40.426 | 94 | 46 | 4 | 43 | 130 | 1 | 90 | 1.36e-12 | 64.3 |
| Msa1217880 | MtrunA17_Chr1g0154111 | 23.864 | 352 | 202 | 17 | 16 | 316 | 26 | 362 | 1.46e-12 | 68.6 |
| Msa1217880 | MtrunA17_Chr4g0033961 | 31.343 | 134 | 79 | 4 | 15 | 137 | 6 | 137 | 8.10e-12 | 65.9 |
| Msa1217880 | MtrunA17_Chr1g0154161 | 24.830 | 294 | 186 | 12 | 13 | 297 | 28 | 295 | 1.86e-11 | 64.3 |
| Msa1217880 | MtrunA17_Chr4g0009491 | 25.197 | 254 | 137 | 8 | 14 | 266 | 224 | 425 | 1.95e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1217880 | AT1G49475.1 | 37.931 | 116 | 70 | 2 | 15 | 130 | 34 | 147 | 4.39e-17 | 78.6 |
| Msa1217880 | AT3G18990.1 | 25.225 | 333 | 197 | 11 | 15 | 304 | 6 | 329 | 3.75e-15 | 75.9 |
| Msa1217880 | AT3G18990.2 | 25.225 | 333 | 197 | 11 | 15 | 304 | 6 | 329 | 6.09e-15 | 75.5 |
| Msa1217880 | AT3G18960.1 | 33.333 | 102 | 67 | 1 | 15 | 116 | 30 | 130 | 6.46e-15 | 73.2 |
| Msa1217880 | AT3G18960.2 | 33.333 | 102 | 67 | 1 | 15 | 116 | 30 | 130 | 7.35e-15 | 72.4 |
| Msa1217880 | AT4G01580.1 | 30.392 | 102 | 70 | 1 | 15 | 116 | 30 | 130 | 1.33e-13 | 68.9 |
| Msa1217880 | AT3G18960.3 | 34.409 | 93 | 60 | 1 | 24 | 116 | 2 | 93 | 4.00e-12 | 64.3 |
Find 43 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGAAACCTTCCATGTTCT+TGG | 0.201035 | 8_1:-80411454 | None:intergenic |
| ATCTGTCTTGATCAACAAAA+AGG | 0.205245 | 8_1:-80412297 | None:intergenic |
| CTTTCTTAATGTATGTCTTT+TGG | 0.214595 | 8_1:-80411716 | None:intergenic |
| ATTTGCAAAATATTTGTCTT+TGG | 0.222298 | 8_1:+80411163 | Msa1217880:CDS |
| TTTGGAAGTCTTAGAGTAAC+TGG | 0.261520 | 8_1:-80411068 | None:intergenic |
| GTTTCATAACTTCAAGGATT+TGG | 0.272565 | 8_1:+80411469 | Msa1217880:CDS |
| GCTCACAATAATTTGAAGTT+TGG | 0.297385 | 8_1:+80412391 | Msa1217880:CDS |
| CTTCATCATCGAAGGGTAAA+AGG | 0.299202 | 8_1:+80411348 | Msa1217880:CDS |
| AATAAGTCACCTTCAAAATA+AGG | 0.303259 | 8_1:-80412502 | None:intergenic |
| TTTGCAAAATATTTGTCTTT+GGG | 0.324072 | 8_1:+80411164 | Msa1217880:CDS |
| AAACTAGTGATTATAATGTT+TGG | 0.368567 | 8_1:+80411120 | Msa1217880:CDS |
| GAACCTTAATGAAGGAAAAC+TGG | 0.378032 | 8_1:+80410708 | Msa1217880:CDS |
| TTGTTGATCAAGACAGATCA+TGG | 0.419506 | 8_1:+80412302 | Msa1217880:CDS |
| AAGTGGTTGTGATGATCTTA+AGG | 0.427796 | 8_1:+80411620 | Msa1217880:CDS |
| CCAGAGAGAAAATCTTAACT+TGG | 0.431915 | 8_1:-80412462 | None:intergenic |
| TCCAAATATGACCGAAAAGA+AGG | 0.438663 | 8_1:+80411085 | Msa1217880:CDS |
| AATGCCTTCTCACAAAACTT+AGG | 0.445086 | 8_1:-80411028 | None:intergenic |
| ATACATTAAGAAAGATATCT+TGG | 0.449671 | 8_1:+80411725 | Msa1217880:CDS |
| TGTTTCTTAGCAAATTCAAT+TGG | 0.465793 | 8_1:-80412244 | None:intergenic |
| ATGCCTTCTCACAAAACTTA+GGG | 0.471997 | 8_1:-80411027 | None:intergenic |
| CTTCAAAGGAACCTTAATGA+AGG | 0.492605 | 8_1:+80410700 | Msa1217880:CDS |
| TGGAAGGTTTCATAACTTCA+AGG | 0.502505 | 8_1:+80411463 | Msa1217880:CDS |
| AACTTCAAGGATTTGGACAA+TGG | 0.526857 | 8_1:+80411476 | Msa1217880:CDS |
| TGAAGATCCTTCATCATCGA+AGG | 0.533226 | 8_1:+80411340 | Msa1217880:CDS |
| AAGAGAAAAGTCCAAGAACA+TGG | 0.537786 | 8_1:+80411443 | Msa1217880:CDS |
| AATATACACTAAGTGGTGGT+TGG | 0.538952 | 8_1:+80412356 | Msa1217880:CDS |
| TTCATCTTCTTAAAATAAGG+TGG | 0.542267 | 8_1:-80411383 | None:intergenic |
| GAACTTGATCATCGGAGTAA+TGG | 0.546118 | 8_1:+80410655 | Msa1217880:CDS |
| TTGCTAAGAAACATCTGCAC+AGG | 0.549108 | 8_1:+80412254 | Msa1217880:CDS |
| AATAATCAATATACACTAAG+TGG | 0.551699 | 8_1:+80412349 | Msa1217880:CDS |
| AAACATCTGCACAGGATGGA+AGG | 0.560035 | 8_1:+80412262 | Msa1217880:CDS |
| CTCTTCAATGTGATTGTATG+CGG | 0.570958 | 8_1:+80411227 | Msa1217880:CDS |
| TTTATGCTGAACAAATGCAA+AGG | 0.583910 | 8_1:+80412427 | Msa1217880:CDS |
| GAAAAGTCCAAGAACATGGA+AGG | 0.592531 | 8_1:+80411447 | Msa1217880:CDS |
| CTTCTAAAGAACTTGATCAT+CGG | 0.594078 | 8_1:+80410647 | Msa1217880:CDS |
| GAAGATCCTTCATCATCGAA+GGG | 0.615664 | 8_1:+80411341 | Msa1217880:CDS |
| AACTAACGAAGAATATGAAG+AGG | 0.623129 | 8_1:+80411286 | Msa1217880:CDS |
| TTTGTGAGAAGGCATTGGCA+AGG | 0.630866 | 8_1:+80411035 | Msa1217880:CDS |
| CGAAGAAATCCTTATCAGAG+TGG | 0.639902 | 8_1:-80411683 | None:intergenic |
| TAAGAAACATCTGCACAGGA+TGG | 0.647638 | 8_1:+80412258 | Msa1217880:CDS |
| AATCAATATACACTAAGTGG+TGG | 0.647702 | 8_1:+80412352 | Msa1217880:CDS |
| TGCCTTCTCACAAAACTTAG+GGG | 0.659933 | 8_1:-80411026 | None:intergenic |
| GTGATTGTATGCGGTAAATG+CGG | 0.696593 | 8_1:+80411236 | Msa1217880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATTAATATATTTTTTT+TGG | + | chr8_1:80411577-80411596 | Msa1217880:intron | 0.0% |
| !!! | AATAATTAATATATTTTTTT+TGG | + | chr8_1:80411577-80411596 | Msa1217880:intron | 0.0% |
| !! | TAAATATTAATTGCAAAATT+AGG | + | chr8_1:80410765-80410784 | Msa1217880:intron | 10.0% |
| !! | AAATATTAATTGCAAAATTA+GGG | + | chr8_1:80410766-80410785 | Msa1217880:intron | 10.0% |
| !!! | ATTTTTTCATCTTATTTTTT+AGG | + | chr8_1:80411543-80411562 | Msa1217880:intron | 10.0% |
| !! | TAAGAAATAATATAACAAAA+TGG | - | chr8_1:80412029-80412048 | None:intergenic | 10.0% |
| !! | TAAATATTAATTGCAAAATT+AGG | + | chr8_1:80410765-80410784 | Msa1217880:intron | 10.0% |
| !! | AAATATTAATTGCAAAATTA+GGG | + | chr8_1:80410766-80410785 | Msa1217880:intron | 10.0% |
| !!! | ATTTTTTCATCTTATTTTTT+AGG | + | chr8_1:80411543-80411562 | Msa1217880:intron | 10.0% |
| !! | TAAGAAATAATATAACAAAA+TGG | - | chr8_1:80412029-80412048 | None:intergenic | 10.0% |
| !!! | ATTTTCATCTTCTTAAAATA+AGG | - | chr8_1:80411389-80411408 | None:intergenic | 15.0% |
| !! | TATGAATGTTAAAAAAACAA+TGG | + | chr8_1:80411803-80411822 | Msa1217880:intron | 15.0% |
| !!! | GTTATATTATTTCTTAGAAT+TGG | + | chr8_1:80412033-80412052 | Msa1217880:intron | 15.0% |
| !!! | TAAAAACAATGATCTAAAAT+AGG | + | chr8_1:80412216-80412235 | Msa1217880:intron | 15.0% |
| !!! | AAAAACAATGATCTAAAATA+GGG | + | chr8_1:80412217-80412236 | Msa1217880:intron | 15.0% |
| !! | AGATGATAATAGAAAAATAA+CGG | - | chr8_1:80412534-80412553 | None:intergenic | 15.0% |
| !! | CATTAATGAATTAATTATGT+TGG | + | chr8_1:80412805-80412824 | Msa1217880:intron | 15.0% |
| !!! | ATTTTCATCTTCTTAAAATA+AGG | - | chr8_1:80411389-80411408 | None:intergenic | 15.0% |
| !! | TATGAATGTTAAAAAAACAA+TGG | + | chr8_1:80411803-80411822 | Msa1217880:intron | 15.0% |
| !!! | GTTATATTATTTCTTAGAAT+TGG | + | chr8_1:80412033-80412052 | Msa1217880:intron | 15.0% |
| !!! | TAAAAACAATGATCTAAAAT+AGG | + | chr8_1:80412216-80412235 | Msa1217880:intron | 15.0% |
| !!! | AAAAACAATGATCTAAAATA+GGG | + | chr8_1:80412217-80412236 | Msa1217880:intron | 15.0% |
| !! | AGATGATAATAGAAAAATAA+CGG | - | chr8_1:80412534-80412553 | None:intergenic | 15.0% |
| !! | CATTAATGAATTAATTATGT+TGG | + | chr8_1:80412805-80412824 | Msa1217880:intron | 15.0% |
| !!! | TTTTCAAGATTATTCTTCAA+AGG | + | chr8_1:80410686-80410705 | Msa1217880:CDS | 20.0% |
| !! | AATTAGGGCTATAAATTAAT+CGG | + | chr8_1:80410781-80410800 | Msa1217880:intron | 20.0% |
| !! | AAACTAGTGATTATAATGTT+TGG | + | chr8_1:80411120-80411139 | Msa1217880:CDS | 20.0% |
| !! | ATTTGCAAAATATTTGTCTT+TGG | + | chr8_1:80411163-80411182 | Msa1217880:CDS | 20.0% |
| !! | TTTGCAAAATATTTGTCTTT+GGG | + | chr8_1:80411164-80411183 | Msa1217880:CDS | 20.0% |
| !!! | TCTTCGTTAGTTTTTTTTAA+AGG | - | chr8_1:80411278-80411297 | None:intergenic | 20.0% |
| !! | ATACATTAAGAAAGATATCT+TGG | + | chr8_1:80411725-80411744 | Msa1217880:CDS | 20.0% |
| !! | ACATTATAGCATAACTTTAT+TGG | - | chr8_1:80411919-80411938 | None:intergenic | 20.0% |
| !!! | TCATTTTGTATACTATTTCT+TGG | + | chr8_1:80411938-80411957 | Msa1217880:intron | 20.0% |
| !! | AATAATCAATATACACTAAG+TGG | + | chr8_1:80412349-80412368 | Msa1217880:CDS | 20.0% |
| !!! | CTGCAACATTTTTTTTTTAA+TGG | + | chr8_1:80412707-80412726 | Msa1217880:intron | 20.0% |
| !!! | TTTTCAAGATTATTCTTCAA+AGG | + | chr8_1:80410686-80410705 | Msa1217880:CDS | 20.0% |
| !! | AATTAGGGCTATAAATTAAT+CGG | + | chr8_1:80410781-80410800 | Msa1217880:intron | 20.0% |
| !! | AAACTAGTGATTATAATGTT+TGG | + | chr8_1:80411120-80411139 | Msa1217880:CDS | 20.0% |
| !! | ATTTGCAAAATATTTGTCTT+TGG | + | chr8_1:80411163-80411182 | Msa1217880:CDS | 20.0% |
| !! | TTTGCAAAATATTTGTCTTT+GGG | + | chr8_1:80411164-80411183 | Msa1217880:CDS | 20.0% |
| !!! | TCTTCGTTAGTTTTTTTTAA+AGG | - | chr8_1:80411278-80411297 | None:intergenic | 20.0% |
| !! | ATACATTAAGAAAGATATCT+TGG | + | chr8_1:80411725-80411744 | Msa1217880:CDS | 20.0% |
| !! | ACATTATAGCATAACTTTAT+TGG | - | chr8_1:80411919-80411938 | None:intergenic | 20.0% |
| !!! | TCATTTTGTATACTATTTCT+TGG | + | chr8_1:80411938-80411957 | Msa1217880:intron | 20.0% |
| !! | AATAATCAATATACACTAAG+TGG | + | chr8_1:80412349-80412368 | Msa1217880:CDS | 20.0% |
| !!! | CTGCAACATTTTTTTTTTAA+TGG | + | chr8_1:80412707-80412726 | Msa1217880:intron | 20.0% |
| ! | GAAGAATAATCTTGAAAAAG+TGG | - | chr8_1:80410684-80410703 | None:intergenic | 25.0% |
| !!! | TATAATGTTTGGTTTTGCAA+TGG | + | chr8_1:80411131-80411150 | Msa1217880:CDS | 25.0% |
| ! | TTCATCTTCTTAAAATAAGG+TGG | - | chr8_1:80411386-80411405 | None:intergenic | 25.0% |
| !! | CTTTCTTAATGTATGTCTTT+TGG | - | chr8_1:80411719-80411738 | None:intergenic | 25.0% |
| ! | GCATTATAGTATAACTTTAG+TGG | - | chr8_1:80412007-80412026 | None:intergenic | 25.0% |
| ! | ACAAATACAAAAAGGCTAAA+TGG | - | chr8_1:80412165-80412184 | None:intergenic | 25.0% |
| ! | ACTCAGAAACAAATACAAAA+AGG | - | chr8_1:80412173-80412192 | None:intergenic | 25.0% |
| ! | TGTTTCTTAGCAAATTCAAT+TGG | - | chr8_1:80412247-80412266 | None:intergenic | 25.0% |
| ! | AATAAGTCACCTTCAAAATA+AGG | - | chr8_1:80412505-80412524 | None:intergenic | 25.0% |
| ! | AAGAGTTAAAAATAGTGTTG+AGG | - | chr8_1:80412613-80412632 | None:intergenic | 25.0% |
| ! | GTAAACCAATAAACTTCATA+AGG | + | chr8_1:80412834-80412853 | Msa1217880:intron | 25.0% |
| ! | AGTTTCCTTATGAAGTTTAT+TGG | - | chr8_1:80412842-80412861 | None:intergenic | 25.0% |
| !! | TTTGAGGTTACAATTTCAAA+AGG | + | chr8_1:80412953-80412972 | Msa1217880:intron | 25.0% |
| ! | GAAGAATAATCTTGAAAAAG+TGG | - | chr8_1:80410684-80410703 | None:intergenic | 25.0% |
| !!! | TATAATGTTTGGTTTTGCAA+TGG | + | chr8_1:80411131-80411150 | Msa1217880:CDS | 25.0% |
| ! | TTCATCTTCTTAAAATAAGG+TGG | - | chr8_1:80411386-80411405 | None:intergenic | 25.0% |
| !! | CTTTCTTAATGTATGTCTTT+TGG | - | chr8_1:80411719-80411738 | None:intergenic | 25.0% |
| ! | GCATTATAGTATAACTTTAG+TGG | - | chr8_1:80412007-80412026 | None:intergenic | 25.0% |
| ! | ACAAATACAAAAAGGCTAAA+TGG | - | chr8_1:80412165-80412184 | None:intergenic | 25.0% |
| ! | ACTCAGAAACAAATACAAAA+AGG | - | chr8_1:80412173-80412192 | None:intergenic | 25.0% |
| ! | TGTTTCTTAGCAAATTCAAT+TGG | - | chr8_1:80412247-80412266 | None:intergenic | 25.0% |
| ! | AATAAGTCACCTTCAAAATA+AGG | - | chr8_1:80412505-80412524 | None:intergenic | 25.0% |
| ! | AAGAGTTAAAAATAGTGTTG+AGG | - | chr8_1:80412613-80412632 | None:intergenic | 25.0% |
| ! | GTAAACCAATAAACTTCATA+AGG | + | chr8_1:80412834-80412853 | Msa1217880:intron | 25.0% |
| ! | AGTTTCCTTATGAAGTTTAT+TGG | - | chr8_1:80412842-80412861 | None:intergenic | 25.0% |
| !! | TTTGAGGTTACAATTTCAAA+AGG | + | chr8_1:80412953-80412972 | Msa1217880:intron | 25.0% |
| ! | CTTCTAAAGAACTTGATCAT+CGG | + | chr8_1:80410647-80410666 | Msa1217880:CDS | 30.0% |
| ! | TTACCAGTTTTCCTTCATTA+AGG | - | chr8_1:80410714-80410733 | None:intergenic | 30.0% |
| AACTAACGAAGAATATGAAG+AGG | + | chr8_1:80411286-80411305 | Msa1217880:CDS | 30.0% | |
| GTTTCATAACTTCAAGGATT+TGG | + | chr8_1:80411469-80411488 | Msa1217880:CDS | 30.0% | |
| ATTCTCAAATTCTCAGTAAG+TGG | + | chr8_1:80411603-80411622 | Msa1217880:intron | 30.0% | |
| !!! | GAATTTTTTCCACTCTGATA+AGG | + | chr8_1:80411674-80411693 | Msa1217880:CDS | 30.0% |
| TCTGTCTTGATCAACAAAAA+GGG | - | chr8_1:80412299-80412318 | None:intergenic | 30.0% | |
| ATCTGTCTTGATCAACAAAA+AGG | - | chr8_1:80412300-80412319 | None:intergenic | 30.0% | |
| AATCAATATACACTAAGTGG+TGG | + | chr8_1:80412352-80412371 | Msa1217880:CDS | 30.0% | |
| ! | GCTCACAATAATTTGAAGTT+TGG | + | chr8_1:80412391-80412410 | Msa1217880:CDS | 30.0% |
| TTTATGCTGAACAAATGCAA+AGG | + | chr8_1:80412427-80412446 | Msa1217880:CDS | 30.0% | |
| !!! | ATGAACACTCCTTATTTTGA+AGG | + | chr8_1:80412493-80412512 | Msa1217880:CDS | 30.0% |
| TACTAAGTGGTAAATACAAG+AGG | - | chr8_1:80412687-80412706 | None:intergenic | 30.0% | |
| AAAAATGTTGCAGTACTAAG+TGG | - | chr8_1:80412700-80412719 | None:intergenic | 30.0% | |
| TGAATTAATTATGTTGGTGC+AGG | + | chr8_1:80412811-80412830 | Msa1217880:intron | 30.0% | |
| GAATTAATTATGTTGGTGCA+GGG | + | chr8_1:80412812-80412831 | Msa1217880:intron | 30.0% | |
| !!! | TGTTGTTTCATGTTTTGAAC+AGG | + | chr8_1:80413011-80413030 | Msa1217880:intron | 30.0% |
| ! | CTTCTAAAGAACTTGATCAT+CGG | + | chr8_1:80410647-80410666 | Msa1217880:CDS | 30.0% |
| ! | TTACCAGTTTTCCTTCATTA+AGG | - | chr8_1:80410714-80410733 | None:intergenic | 30.0% |
| AACTAACGAAGAATATGAAG+AGG | + | chr8_1:80411286-80411305 | Msa1217880:CDS | 30.0% | |
| GTTTCATAACTTCAAGGATT+TGG | + | chr8_1:80411469-80411488 | Msa1217880:CDS | 30.0% | |
| ATTCTCAAATTCTCAGTAAG+TGG | + | chr8_1:80411603-80411622 | Msa1217880:intron | 30.0% | |
| !!! | GAATTTTTTCCACTCTGATA+AGG | + | chr8_1:80411674-80411693 | Msa1217880:CDS | 30.0% |
| TCTGTCTTGATCAACAAAAA+GGG | - | chr8_1:80412299-80412318 | None:intergenic | 30.0% | |
| ATCTGTCTTGATCAACAAAA+AGG | - | chr8_1:80412300-80412319 | None:intergenic | 30.0% | |
| AATCAATATACACTAAGTGG+TGG | + | chr8_1:80412352-80412371 | Msa1217880:CDS | 30.0% | |
| ! | GCTCACAATAATTTGAAGTT+TGG | + | chr8_1:80412391-80412410 | Msa1217880:CDS | 30.0% |
| TTTATGCTGAACAAATGCAA+AGG | + | chr8_1:80412427-80412446 | Msa1217880:CDS | 30.0% | |
| !!! | ATGAACACTCCTTATTTTGA+AGG | + | chr8_1:80412493-80412512 | Msa1217880:CDS | 30.0% |
| TACTAAGTGGTAAATACAAG+AGG | - | chr8_1:80412687-80412706 | None:intergenic | 30.0% | |
| AAAAATGTTGCAGTACTAAG+TGG | - | chr8_1:80412700-80412719 | None:intergenic | 30.0% | |
| TGAATTAATTATGTTGGTGC+AGG | + | chr8_1:80412811-80412830 | Msa1217880:intron | 30.0% | |
| GAATTAATTATGTTGGTGCA+GGG | + | chr8_1:80412812-80412831 | Msa1217880:intron | 30.0% | |
| !!! | TGTTGTTTCATGTTTTGAAC+AGG | + | chr8_1:80413011-80413030 | Msa1217880:intron | 30.0% |
| CTTCAAAGGAACCTTAATGA+AGG | + | chr8_1:80410700-80410719 | Msa1217880:CDS | 35.0% | |
| GAACCTTAATGAAGGAAAAC+TGG | + | chr8_1:80410708-80410727 | Msa1217880:CDS | 35.0% | |
| ! | GAAATCTAGTTTACGACCTT+TGG | + | chr8_1:80410805-80410824 | Msa1217880:intron | 35.0% |
| ATGCCTTCTCACAAAACTTA+GGG | - | chr8_1:80411030-80411049 | None:intergenic | 35.0% | |
| AATGCCTTCTCACAAAACTT+AGG | - | chr8_1:80411031-80411050 | None:intergenic | 35.0% | |
| !! | TAAGTTTTGTGAGAAGGCAT+TGG | + | chr8_1:80411030-80411049 | Msa1217880:CDS | 35.0% |
| TTTGGAAGTCTTAGAGTAAC+TGG | - | chr8_1:80411071-80411090 | None:intergenic | 35.0% | |
| TCCAAATATGACCGAAAAGA+AGG | + | chr8_1:80411085-80411104 | Msa1217880:CDS | 35.0% | |
| ! | ACCTTCTTTTCGGTCATATT+TGG | - | chr8_1:80411089-80411108 | None:intergenic | 35.0% |
| !!! | TGACCGAAAAGAAGGTTTTT+TGG | + | chr8_1:80411093-80411112 | Msa1217880:CDS | 35.0% |
| !!! | GACCGAAAAGAAGGTTTTTT+GGG | + | chr8_1:80411094-80411113 | Msa1217880:CDS | 35.0% |
| ! | CTCCCAAAAAACCTTCTTTT+CGG | - | chr8_1:80411099-80411118 | None:intergenic | 35.0% |
| !!! | ATGTTTGGTTTTGCAATGGT+TGG | + | chr8_1:80411135-80411154 | Msa1217880:CDS | 35.0% |
| CTCTTCAATGTGATTGTATG+CGG | + | chr8_1:80411227-80411246 | Msa1217880:CDS | 35.0% | |
| AAGAGAAAAGTCCAAGAACA+TGG | + | chr8_1:80411443-80411462 | Msa1217880:CDS | 35.0% | |
| TATGAAACCTTCCATGTTCT+TGG | - | chr8_1:80411457-80411476 | None:intergenic | 35.0% | |
| TGGAAGGTTTCATAACTTCA+AGG | + | chr8_1:80411463-80411482 | Msa1217880:CDS | 35.0% | |
| AACTTCAAGGATTTGGACAA+TGG | + | chr8_1:80411476-80411495 | Msa1217880:CDS | 35.0% | |
| AAGTGGTTGTGATGATCTTA+AGG | + | chr8_1:80411620-80411639 | Msa1217880:CDS | 35.0% | |
| TTGTTGATCAAGACAGATCA+TGG | + | chr8_1:80412302-80412321 | Msa1217880:CDS | 35.0% | |
| AATATACACTAAGTGGTGGT+TGG | + | chr8_1:80412356-80412375 | Msa1217880:CDS | 35.0% | |
| CCAGAGAGAAAATCTTAACT+TGG | - | chr8_1:80412465-80412484 | None:intergenic | 35.0% | |
| ! | CCAAGTTAAGATTTTCTCTC+TGG | + | chr8_1:80412462-80412481 | Msa1217880:CDS | 35.0% |
| TGGCGATACTTGTTTATTGA+AGG | + | chr8_1:80412907-80412926 | Msa1217880:intron | 35.0% | |
| CGATACTTGTTTATTGAAGG+TGG | + | chr8_1:80412910-80412929 | Msa1217880:intron | 35.0% | |
| ! | CAAATACCAGTGTTTTCTCA+TGG | - | chr8_1:80412937-80412956 | None:intergenic | 35.0% |
| TGAGAAAACACTGGTATTTG+AGG | + | chr8_1:80412937-80412956 | Msa1217880:intron | 35.0% | |
| CTTCAAAGGAACCTTAATGA+AGG | + | chr8_1:80410700-80410719 | Msa1217880:CDS | 35.0% | |
| GAACCTTAATGAAGGAAAAC+TGG | + | chr8_1:80410708-80410727 | Msa1217880:CDS | 35.0% | |
| ! | GAAATCTAGTTTACGACCTT+TGG | + | chr8_1:80410805-80410824 | Msa1217880:intron | 35.0% |
| ATGCCTTCTCACAAAACTTA+GGG | - | chr8_1:80411030-80411049 | None:intergenic | 35.0% | |
| AATGCCTTCTCACAAAACTT+AGG | - | chr8_1:80411031-80411050 | None:intergenic | 35.0% | |
| !! | TAAGTTTTGTGAGAAGGCAT+TGG | + | chr8_1:80411030-80411049 | Msa1217880:CDS | 35.0% |
| TTTGGAAGTCTTAGAGTAAC+TGG | - | chr8_1:80411071-80411090 | None:intergenic | 35.0% | |
| TCCAAATATGACCGAAAAGA+AGG | + | chr8_1:80411085-80411104 | Msa1217880:CDS | 35.0% | |
| ! | ACCTTCTTTTCGGTCATATT+TGG | - | chr8_1:80411089-80411108 | None:intergenic | 35.0% |
| !!! | TGACCGAAAAGAAGGTTTTT+TGG | + | chr8_1:80411093-80411112 | Msa1217880:CDS | 35.0% |
| !!! | GACCGAAAAGAAGGTTTTTT+GGG | + | chr8_1:80411094-80411113 | Msa1217880:CDS | 35.0% |
| ! | CTCCCAAAAAACCTTCTTTT+CGG | - | chr8_1:80411099-80411118 | None:intergenic | 35.0% |
| !!! | ATGTTTGGTTTTGCAATGGT+TGG | + | chr8_1:80411135-80411154 | Msa1217880:CDS | 35.0% |
| CTCTTCAATGTGATTGTATG+CGG | + | chr8_1:80411227-80411246 | Msa1217880:CDS | 35.0% | |
| AAGAGAAAAGTCCAAGAACA+TGG | + | chr8_1:80411443-80411462 | Msa1217880:CDS | 35.0% | |
| TATGAAACCTTCCATGTTCT+TGG | - | chr8_1:80411457-80411476 | None:intergenic | 35.0% | |
| TGGAAGGTTTCATAACTTCA+AGG | + | chr8_1:80411463-80411482 | Msa1217880:CDS | 35.0% | |
| AACTTCAAGGATTTGGACAA+TGG | + | chr8_1:80411476-80411495 | Msa1217880:CDS | 35.0% | |
| AAGTGGTTGTGATGATCTTA+AGG | + | chr8_1:80411620-80411639 | Msa1217880:CDS | 35.0% | |
| TTGTTGATCAAGACAGATCA+TGG | + | chr8_1:80412302-80412321 | Msa1217880:CDS | 35.0% | |
| AATATACACTAAGTGGTGGT+TGG | + | chr8_1:80412356-80412375 | Msa1217880:CDS | 35.0% | |
| CCAGAGAGAAAATCTTAACT+TGG | - | chr8_1:80412465-80412484 | None:intergenic | 35.0% | |
| ! | CCAAGTTAAGATTTTCTCTC+TGG | + | chr8_1:80412462-80412481 | Msa1217880:CDS | 35.0% |
| TGGCGATACTTGTTTATTGA+AGG | + | chr8_1:80412907-80412926 | Msa1217880:intron | 35.0% | |
| CGATACTTGTTTATTGAAGG+TGG | + | chr8_1:80412910-80412929 | Msa1217880:intron | 35.0% | |
| ! | CAAATACCAGTGTTTTCTCA+TGG | - | chr8_1:80412937-80412956 | None:intergenic | 35.0% |
| TGAGAAAACACTGGTATTTG+AGG | + | chr8_1:80412937-80412956 | Msa1217880:intron | 35.0% | |
| GAACTTGATCATCGGAGTAA+TGG | + | chr8_1:80410655-80410674 | Msa1217880:CDS | 40.0% | |
| TGCCTTCTCACAAAACTTAG+GGG | - | chr8_1:80411029-80411048 | None:intergenic | 40.0% | |
| GTGATTGTATGCGGTAAATG+CGG | + | chr8_1:80411236-80411255 | Msa1217880:CDS | 40.0% | |
| TGAAGATCCTTCATCATCGA+AGG | + | chr8_1:80411340-80411359 | Msa1217880:CDS | 40.0% | |
| GAAGATCCTTCATCATCGAA+GGG | + | chr8_1:80411341-80411360 | Msa1217880:CDS | 40.0% | |
| ! | CTTTTACCCTTCGATGATGA+AGG | - | chr8_1:80411350-80411369 | None:intergenic | 40.0% |
| CTTCATCATCGAAGGGTAAA+AGG | + | chr8_1:80411348-80411367 | Msa1217880:CDS | 40.0% | |
| GAAAAGTCCAAGAACATGGA+AGG | + | chr8_1:80411447-80411466 | Msa1217880:CDS | 40.0% | |
| TCAAGGATTTGGACAATGGT+TGG | + | chr8_1:80411480-80411499 | Msa1217880:intron | 40.0% | |
| CGAAGAAATCCTTATCAGAG+TGG | - | chr8_1:80411686-80411705 | None:intergenic | 40.0% | |
| TTGCTAAGAAACATCTGCAC+AGG | + | chr8_1:80412254-80412273 | Msa1217880:CDS | 40.0% | |
| TAAGAAACATCTGCACAGGA+TGG | + | chr8_1:80412258-80412277 | Msa1217880:CDS | 40.0% | |
| GAACTTGATCATCGGAGTAA+TGG | + | chr8_1:80410655-80410674 | Msa1217880:CDS | 40.0% | |
| TGCCTTCTCACAAAACTTAG+GGG | - | chr8_1:80411029-80411048 | None:intergenic | 40.0% | |
| GTGATTGTATGCGGTAAATG+CGG | + | chr8_1:80411236-80411255 | Msa1217880:CDS | 40.0% | |
| TGAAGATCCTTCATCATCGA+AGG | + | chr8_1:80411340-80411359 | Msa1217880:CDS | 40.0% | |
| GAAGATCCTTCATCATCGAA+GGG | + | chr8_1:80411341-80411360 | Msa1217880:CDS | 40.0% | |
| ! | CTTTTACCCTTCGATGATGA+AGG | - | chr8_1:80411350-80411369 | None:intergenic | 40.0% |
| CTTCATCATCGAAGGGTAAA+AGG | + | chr8_1:80411348-80411367 | Msa1217880:CDS | 40.0% | |
| GAAAAGTCCAAGAACATGGA+AGG | + | chr8_1:80411447-80411466 | Msa1217880:CDS | 40.0% | |
| TCAAGGATTTGGACAATGGT+TGG | + | chr8_1:80411480-80411499 | Msa1217880:intron | 40.0% | |
| CGAAGAAATCCTTATCAGAG+TGG | - | chr8_1:80411686-80411705 | None:intergenic | 40.0% | |
| TTGCTAAGAAACATCTGCAC+AGG | + | chr8_1:80412254-80412273 | Msa1217880:CDS | 40.0% | |
| TAAGAAACATCTGCACAGGA+TGG | + | chr8_1:80412258-80412277 | Msa1217880:CDS | 40.0% | |
| !! | GTTTACGACCTTTGGAGTGT+AGG | + | chr8_1:80410813-80410832 | Msa1217880:intron | 45.0% |
| CTCATTCACCTACACTCCAA+AGG | - | chr8_1:80410824-80410843 | None:intergenic | 45.0% | |
| GGAGTGTAGGTGAATGAGTA+AGG | + | chr8_1:80410826-80410845 | Msa1217880:intron | 45.0% | |
| !! | TGCCCCTAAGTTTTGTGAGA+AGG | + | chr8_1:80411024-80411043 | Msa1217880:CDS | 45.0% |
| !! | TTTGTGAGAAGGCATTGGCA+AGG | + | chr8_1:80411035-80411054 | Msa1217880:CDS | 45.0% |
| AAACATCTGCACAGGATGGA+AGG | + | chr8_1:80412262-80412281 | Msa1217880:CDS | 45.0% | |
| !! | GTTTACGACCTTTGGAGTGT+AGG | + | chr8_1:80410813-80410832 | Msa1217880:intron | 45.0% |
| CTCATTCACCTACACTCCAA+AGG | - | chr8_1:80410824-80410843 | None:intergenic | 45.0% | |
| GGAGTGTAGGTGAATGAGTA+AGG | + | chr8_1:80410826-80410845 | Msa1217880:intron | 45.0% | |
| !! | TGCCCCTAAGTTTTGTGAGA+AGG | + | chr8_1:80411024-80411043 | Msa1217880:CDS | 45.0% |
| !! | TTTGTGAGAAGGCATTGGCA+AGG | + | chr8_1:80411035-80411054 | Msa1217880:CDS | 45.0% |
| AAACATCTGCACAGGATGGA+AGG | + | chr8_1:80412262-80412281 | Msa1217880:CDS | 45.0% | |
| !!! | TTTTTAAAATATATTTTGAA+TGG | + | chr8_1:80412640-80412659 | Msa1217880:intron | 5.0% |
| !!! | TTTTTAAAATATATTTTGAA+TGG | + | chr8_1:80412640-80412659 | Msa1217880:intron | 5.0% |
| GCTTGCGATTTGCGAGAAGT+TGG | + | chr8_1:80412887-80412906 | Msa1217880:intron | 50.0% | |
| GGTGGTCCATGAGAAAACAC+TGG | + | chr8_1:80412928-80412947 | Msa1217880:intron | 50.0% | |
| GCTTGCGATTTGCGAGAAGT+TGG | + | chr8_1:80412887-80412906 | Msa1217880:intron | 50.0% | |
| GGTGGTCCATGAGAAAACAC+TGG | + | chr8_1:80412928-80412947 | Msa1217880:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 80410643 | 80413058 | 80410643 | ID=Msa1217880;Name=Msa1217880 |
| chr8_1 | mRNA | 80410643 | 80413058 | 80410643 | ID=Msa1217880-mRNA-1;Parent=Msa1217880;Name=Msa1217880-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|0.8|1|1|5|0|331 |
| chr8_1 | exon | 80410643 | 80410729 | 80410643 | ID=Msa1217880-mRNA-1:exon:28160;Parent=Msa1217880-mRNA-1 |
| chr8_1 | exon | 80411020 | 80411497 | 80411020 | ID=Msa1217880-mRNA-1:exon:28161;Parent=Msa1217880-mRNA-1 |
| chr8_1 | exon | 80411619 | 80411746 | 80411619 | ID=Msa1217880-mRNA-1:exon:28162;Parent=Msa1217880-mRNA-1 |
| chr8_1 | exon | 80412238 | 80412514 | 80412238 | ID=Msa1217880-mRNA-1:exon:28163;Parent=Msa1217880-mRNA-1 |
| chr8_1 | exon | 80413033 | 80413058 | 80413033 | ID=Msa1217880-mRNA-1:exon:28164;Parent=Msa1217880-mRNA-1 |
| chr8_1 | CDS | 80410643 | 80410729 | 80410643 | ID=Msa1217880-mRNA-1:cds;Parent=Msa1217880-mRNA-1 |
| chr8_1 | CDS | 80411020 | 80411497 | 80411020 | ID=Msa1217880-mRNA-1:cds;Parent=Msa1217880-mRNA-1 |
| chr8_1 | CDS | 80411619 | 80411746 | 80411619 | ID=Msa1217880-mRNA-1:cds;Parent=Msa1217880-mRNA-1 |
| chr8_1 | CDS | 80412238 | 80412514 | 80412238 | ID=Msa1217880-mRNA-1:cds;Parent=Msa1217880-mRNA-1 |
| chr8_1 | CDS | 80413033 | 80413058 | 80413033 | ID=Msa1217880-mRNA-1:cds;Parent=Msa1217880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
