AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1218420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1218420 MtrunA17_Chr4g0029241 68.953 277 14 2 2 238 171 415 7.13e-127 365
Msa1218420 MtrunA17_Chr2g0326531 57.034 263 41 2 2 224 173 403 8.75e-95 283
Msa1218420 MtrunA17_Chr4g0063881 27.189 217 148 3 2 210 59 273 4.85e-24 99.4
Msa1218420 MtrunA17_Chr5g0428031 27.313 227 153 5 2 220 57 279 2.57e-22 94.7
Msa1218420 MtrunA17_Chr2g0304111 25.238 210 145 4 1 200 70 277 6.14e-21 90.9
Msa1218420 MtrunA17_Chr1g0150321 27.979 193 102 5 2 192 61 218 6.71e-20 87.8
Msa1218420 MtrunA17_Chr3g0107011 29.167 192 89 8 2 186 62 213 6.91e-20 87.8
Msa1218420 MtrunA17_Chr8g0379091 26.190 210 141 6 2 200 74 280 1.40e-19 87.0
Msa1218420 MtrunA17_Chr2g0284011 27.143 210 138 6 2 200 60 265 1.52e-19 86.7
Msa1218420 MtrunA17_Chr8g0346081 24.638 207 146 5 2 200 65 269 1.80e-19 86.7
Msa1218420 MtrunA17_Chr4g0013131 24.402 209 145 5 2 200 60 265 7.39e-19 84.7
Msa1218420 MtrunA17_Chr8g0346071 31.405 121 81 1 6 126 69 187 9.29e-19 84.3
Msa1218420 MtrunA17_Chr5g0441011 25.714 245 148 8 2 231 61 286 4.31e-18 82.4
Msa1218420 MtrunA17_Chr6g0468751 27.928 222 142 7 2 213 67 280 5.34e-18 82.4
Msa1218420 MtrunA17_Chr6g0453681 28.108 185 98 3 2 186 67 216 8.76e-18 82.0
Msa1218420 MtrunA17_Chr2g0284031 25.676 222 150 7 2 212 79 296 2.20e-17 80.9
Msa1218420 MtrunA17_Chr3g0132671 27.222 180 96 3 2 181 97 241 2.76e-17 80.5
Msa1218420 MtrunA17_Chr7g0244521 26.203 187 101 5 2 186 60 211 1.18e-16 78.6
Msa1218420 MtrunA17_Chr1g0205421 27.473 182 95 5 2 181 60 206 1.23e-16 78.6
Msa1218420 MtrunA17_Chr5g0432471 25.654 191 97 6 2 186 60 211 1.23e-16 78.6
Msa1218420 MtrunA17_Chr3g0114511 27.957 186 89 5 6 186 84 229 2.10e-16 77.8
Msa1218420 MtrunA17_Chr4g0001331 26.455 189 102 5 2 188 68 221 3.27e-16 77.0
Msa1218420 MtrunA17_Chr2g0302431 25.238 210 143 5 2 200 68 274 6.96e-16 76.3
Msa1218420 MtrunA17_Chr2g0333821 24.378 201 115 4 2 200 62 227 7.64e-16 76.3
Msa1218420 MtrunA17_Chr5g0432491 26.203 187 102 4 2 186 71 223 8.09e-16 75.9
Msa1218420 MtrunA17_Chr4g0074111 27.225 191 98 6 2 188 66 219 9.01e-16 75.5
Msa1218420 MtrunA17_Chr1g0166101 27.536 207 105 6 6 201 76 248 9.66e-16 75.9
Msa1218420 MtrunA17_Chr4g0069301 24.878 205 142 4 6 200 78 280 1.34e-15 75.5
Msa1218420 MtrunA17_Chr6g0453671 23.645 203 144 5 6 200 71 270 2.86e-15 74.3
Msa1218420 MtrunA17_Chr7g0272841 28.319 226 121 5 2 222 121 310 3.75e-15 74.3
Msa1218420 MtrunA17_Chr5g0396361 24.309 181 106 2 2 182 187 336 7.63e-15 73.6
Msa1218420 MtrunA17_Chr8g0374571 30.108 186 85 5 7 186 72 218 1.08e-14 72.4
Msa1218420 MtrunA17_Chr3g0107051 23.333 210 148 6 1 200 68 274 1.10e-14 72.8
Msa1218420 MtrunA17_Chr1g0188031 27.322 183 98 5 6 186 73 222 1.21e-14 72.4
Msa1218420 MtrunA17_Chr3g0125381 26.540 211 132 5 9 204 7 209 1.52e-14 70.1
Msa1218420 MtrunA17_Chr5g0424501 32.192 146 90 4 2 145 241 379 2.02e-14 72.0
Msa1218420 MtrunA17_Chr7g0274941 24.468 188 97 4 5 186 67 215 3.25e-14 70.5
Msa1218420 MtrunA17_Chr5g0428981 29.012 162 108 3 27 186 834 990 4.13e-14 71.2
Msa1218420 MtrunA17_Chr3g0130151 30.986 142 94 3 1 142 293 430 4.36e-14 71.2
Msa1218420 MtrunA17_Chr1g0170551 30.400 125 84 2 2 126 54 175 5.38e-14 71.2
Msa1218420 MtrunA17_Chr4g0018201 28.395 162 109 3 27 186 830 986 6.36e-14 70.9
Msa1218420 MtrunA17_Chr5g0402601 33.333 132 74 5 1 126 421 544 1.35e-13 69.7
Msa1218420 MtrunA17_Chr5g0424581 32.192 146 90 4 2 145 174 312 1.40e-13 69.3
Msa1218420 MtrunA17_Chr3g0099951 36.190 105 65 1 2 106 63 165 1.79e-13 68.9
Msa1218420 MtrunA17_Chr5g0424651 32.192 146 90 4 2 145 370 508 2.17e-13 68.9
Msa1218420 MtrunA17_Chr4g0008561 30.159 126 82 3 2 124 66 188 2.60e-13 68.9
Msa1218420 MtrunA17_Chr3g0129721 29.851 134 76 5 2 126 72 196 4.46e-13 67.4
Msa1218420 MtrunA17_Chr4g0040141 33.000 100 67 0 2 101 176 275 5.40e-13 67.8
Msa1218420 MtrunA17_Chr1g0205931 28.947 152 100 3 2 147 108 257 6.03e-13 67.8
Msa1218420 MtrunA17_Chr8g0386981 33.858 127 77 3 2 126 458 579 6.40e-13 67.8
Msa1218420 MtrunA17_Chr8g0384301 29.861 144 93 4 1 142 348 485 9.90e-13 67.0
Msa1218420 MtrunA17_Chr1g0197721 32.407 108 71 1 1 108 98 203 1.45e-12 66.6
Msa1218420 MtrunA17_Chr8g0345801 27.368 190 95 7 2 186 62 213 2.02e-12 65.1
Msa1218420 MtrunA17_Chr2g0325851 30.814 172 109 3 2 165 602 771 2.32e-12 66.2
Msa1218420 MtrunA17_Chr2g0276831 31.707 123 77 2 12 127 66 188 2.37e-12 65.5
Msa1218420 MtrunA17_Chr4g0041201 32.331 133 85 2 2 131 592 722 3.53e-12 65.5
Msa1218420 MtrunA17_Chr1g0171451 30.337 178 106 6 2 166 459 631 3.84e-12 65.5
Msa1218420 MtrunA17_Chr3g0131861 29.000 100 71 0 2 101 144 243 4.78e-12 65.1
Msa1218420 MtrunA17_Chr6g0478601 26.702 191 76 4 27 186 182 339 5.88e-12 64.7
Msa1218420 MtrunA17_Chr1g0202831 33.858 127 77 3 2 126 461 582 8.24e-12 64.7
Msa1218420 MtrunA17_Chr1g0179331 35.385 130 77 3 2 126 600 727 1.13e-11 63.9
Msa1218420 MtrunA17_Chr3g0091421 28.800 125 85 3 9 132 67 188 1.31e-11 62.4
Msa1218420 MtrunA17_Chr5g0424531 30.556 144 95 3 2 145 65 203 1.41e-11 62.8
Msa1218420 MtrunA17_Chr4g0059751 27.568 185 92 4 5 186 147 292 1.62e-11 63.2
Msa1218420 MtrunA17_Chr7g0244561 26.316 209 142 6 2 200 65 271 2.21e-11 62.8
Msa1218420 MtrunA17_Chr6g0453711 29.907 107 75 0 2 108 157 263 2.39e-11 63.2
Msa1218420 MtrunA17_Chr4g0051261 33.654 104 65 3 2 103 51 152 2.51e-11 62.4
Msa1218420 MtrunA17_Chr2g0324461 31.000 100 69 0 2 101 188 287 2.52e-11 63.2
Msa1218420 MtrunA17_Chr4g0051191 28.966 145 98 3 1 145 212 351 2.65e-11 62.8
Msa1218420 MtrunA17_Chr8g0353621 29.661 118 78 2 9 126 65 177 3.15e-11 61.6
Msa1218420 MtrunA17_Chr6g0479211 28.161 174 96 5 13 186 114 258 3.21e-11 62.0
Msa1218420 MtrunA17_Chr2g0317501 24.432 176 102 2 2 177 181 325 3.85e-11 62.4
Msa1218420 MtrunA17_Chr2g0299781 27.749 191 116 5 14 186 173 359 5.32e-11 62.0
Msa1218420 MtrunA17_Chr4g0038091 30.645 124 82 2 5 126 70 191 5.86e-11 62.0
Msa1218420 MtrunA17_Chr3g0091281 28.800 125 85 3 9 132 67 188 6.48e-11 60.5
Msa1218420 MtrunA17_Chr8g0351491 25.943 212 129 7 9 204 71 270 7.10e-11 60.8
Msa1218420 MtrunA17_Chr3g0143531 26.163 172 114 5 2 165 70 236 7.24e-11 60.8
Msa1218420 MtrunA17_Chr4g0038501 29.839 124 83 2 5 126 70 191 8.76e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1218420 AT5G60550.1 51.866 268 59 2 2 229 161 398 1.76e-85 260
Msa1218420 AT3G45240.2 50.562 267 60 2 2 228 162 396 5.32e-81 248
Msa1218420 AT3G45240.1 50.562 267 60 2 2 228 162 396 5.32e-81 248
Msa1218420 AT3G45240.3 50.562 267 57 3 2 228 162 393 2.63e-79 243
Msa1218420 AT5G35410.2 26.977 215 147 3 2 208 59 271 3.84e-23 96.7
Msa1218420 AT4G24400.1 26.728 217 149 4 2 210 57 271 4.43e-23 97.1
Msa1218420 AT4G24400.2 26.728 217 149 4 2 210 57 271 4.64e-23 97.1
Msa1218420 AT5G35410.1 26.977 215 147 3 2 208 59 271 6.75e-23 96.7
Msa1218420 AT2G26980.1 27.347 245 144 9 2 231 62 287 1.24e-21 92.4
Msa1218420 AT2G26980.5 27.347 245 144 9 2 231 62 287 1.65e-21 92.4
Msa1218420 AT2G26980.3 27.347 245 144 9 2 231 62 287 1.98e-21 92.4
Msa1218420 AT2G26980.4 27.347 245 144 9 2 231 72 297 2.17e-21 92.4
Msa1218420 AT4G18700.1 25.296 253 169 8 2 238 74 322 5.96e-20 88.6
Msa1218420 AT2G26980.2 29.167 192 90 5 2 186 62 214 6.23e-20 86.3
Msa1218420 AT1G30270.2 26.667 210 140 6 2 200 79 285 3.08e-19 86.3
Msa1218420 AT3G01090.2 29.189 185 96 3 2 186 90 239 3.28e-19 86.7
Msa1218420 AT3G01090.3 29.189 185 96 3 2 186 67 216 3.79e-19 86.3
Msa1218420 AT3G01090.1 29.189 185 96 3 2 186 67 216 3.79e-19 86.3
Msa1218420 AT1G30270.1 26.667 210 140 6 2 200 79 285 3.81e-19 86.3
Msa1218420 AT2G25090.1 26.457 223 145 4 2 207 64 284 9.37e-19 85.1
Msa1218420 AT1G01140.1 27.551 196 103 4 2 192 67 228 9.64e-19 84.7
Msa1218420 AT1G01140.3 27.551 196 103 4 2 192 67 228 9.96e-19 84.7
Msa1218420 AT1G01140.2 27.551 196 103 4 2 192 67 228 1.03e-18 84.7
Msa1218420 AT2G30360.1 24.645 211 147 4 2 202 70 278 1.28e-18 84.3
Msa1218420 AT5G39440.1 28.054 221 142 5 2 213 67 279 1.51e-18 84.3
Msa1218420 AT5G10930.1 28.934 197 101 5 2 195 61 221 1.55e-18 84.3
Msa1218420 AT4G30960.1 27.751 209 138 5 2 200 72 277 2.48e-18 83.6
Msa1218420 AT5G57630.2 31.336 217 130 9 6 211 64 272 3.02e-18 83.2
Msa1218420 AT5G21326.1 26.728 217 137 6 6 207 65 274 3.19e-18 83.2
Msa1218420 AT5G57630.1 31.336 217 130 9 6 211 64 272 3.21e-18 83.2
Msa1218420 AT5G01810.3 28.780 205 133 8 6 200 64 265 7.21e-18 82.0
Msa1218420 AT5G01810.1 28.780 205 133 8 6 200 64 265 7.76e-18 82.0
Msa1218420 AT5G01810.2 28.780 205 133 8 6 200 64 265 7.76e-18 82.0
Msa1218420 AT3G29160.3 27.568 185 99 3 2 186 68 217 1.06e-17 81.3
Msa1218420 AT5G45820.1 24.402 209 145 5 2 200 60 265 1.50e-17 81.3
Msa1218420 AT3G29160.1 27.568 185 99 3 2 186 68 217 2.37e-17 80.9
Msa1218420 AT3G29160.2 27.568 185 99 3 2 186 68 217 2.37e-17 80.9
Msa1218420 AT5G25110.1 25.389 193 107 4 2 192 91 248 7.25e-17 79.7
Msa1218420 AT5G45810.1 26.190 210 140 7 2 200 76 281 8.21e-17 79.3
Msa1218420 AT1G29230.1 26.636 214 134 8 2 200 122 327 9.77e-17 79.3
Msa1218420 AT1G30640.2 27.363 201 118 4 5 186 171 362 1.14e-16 79.0
Msa1218420 AT1G30640.1 27.363 201 118 4 5 186 171 362 1.14e-16 79.0
Msa1218420 AT1G30640.3 27.363 201 118 4 5 186 78 269 1.45e-16 78.6
Msa1218420 AT3G23000.1 28.249 177 92 4 7 182 79 221 1.73e-16 78.2
Msa1218420 AT4G14580.1 27.174 184 98 4 5 186 73 222 3.30e-16 77.4
Msa1218420 AT5G58380.1 23.923 209 146 5 2 200 60 265 3.56e-16 77.4
Msa1218420 AT5G21222.1 24.880 209 145 7 2 200 61 267 7.83e-16 76.6
Msa1218420 AT5G21222.2 24.880 209 145 7 2 200 61 267 7.83e-16 76.6
Msa1218420 AT5G21222.4 24.880 209 145 7 2 200 61 267 7.83e-16 76.6
Msa1218420 AT5G21222.3 24.880 209 145 7 2 200 61 267 7.83e-16 76.6
Msa1218420 AT2G34180.1 27.273 187 99 5 2 186 105 256 2.06e-15 75.5
Msa1218420 AT5G62310.1 29.032 186 122 4 27 209 825 1003 3.58e-15 75.1
Msa1218420 AT1G09000.2 27.907 215 139 7 2 203 122 333 7.76e-15 73.9
Msa1218420 AT1G09000.1 27.907 215 139 7 2 203 122 333 1.01e-14 73.6
Msa1218420 AT3G17850.1 28.834 163 108 4 27 186 953 1110 2.22e-14 72.8
Msa1218420 AT1G30270.3 26.923 182 121 5 30 200 8 188 2.93e-14 71.6
Msa1218420 AT1G48260.1 26.512 215 110 6 2 209 59 232 3.14e-14 71.6
Msa1218420 AT2G31010.1 30.814 172 109 3 2 165 564 733 3.41e-14 72.0
Msa1218420 AT2G31010.2 30.814 172 109 3 2 165 564 733 3.41e-14 72.0
Msa1218420 AT1G48490.4 29.814 161 103 4 27 186 900 1051 3.56e-14 72.0
Msa1218420 AT1G48490.3 29.814 161 103 4 27 186 899 1050 3.80e-14 72.0
Msa1218420 AT1G48490.2 29.814 161 103 4 27 186 899 1050 3.80e-14 72.0
Msa1218420 AT1G48490.1 29.814 161 103 4 27 186 899 1050 3.80e-14 72.0
Msa1218420 AT1G45160.1 30.000 160 106 2 27 186 741 894 4.63e-14 71.6
Msa1218420 AT1G45160.2 29.375 160 107 2 27 186 741 894 4.65e-14 71.6
Msa1218420 AT5G04510.3 27.083 192 95 4 5 186 95 251 4.88e-14 70.5
Msa1218420 AT5G04510.2 33.962 106 68 1 1 106 91 194 5.20e-14 70.9
Msa1218420 AT5G04510.1 33.962 106 68 1 1 106 91 194 6.26e-14 70.9
Msa1218420 AT3G10540.1 34.906 106 67 1 1 106 92 195 1.21e-13 70.1
Msa1218420 AT2G38490.1 27.322 183 92 5 2 180 76 221 1.96e-13 69.3
Msa1218420 AT2G45490.1 25.229 218 137 6 5 207 73 279 2.01e-13 68.6
Msa1218420 AT2G37840.1 30.159 126 82 3 2 124 59 181 2.12e-13 69.7
Msa1218420 AT1G54960.1 30.921 152 97 3 2 147 121 270 2.31e-13 69.3
Msa1218420 AT1G54960.2 30.921 152 97 3 2 147 121 270 2.31e-13 69.3
Msa1218420 AT1G51660.1 36.800 125 73 3 2 126 125 243 2.58e-13 68.9
Msa1218420 AT3G17510.1 26.457 223 116 6 2 217 68 249 2.87e-13 68.9
Msa1218420 AT5G58950.1 27.586 203 97 7 2 196 258 418 3.82e-13 68.6
Msa1218420 AT1G03740.2 24.432 176 102 2 2 177 260 404 5.70e-13 68.2
Msa1218420 AT1G03740.1 24.432 176 102 2 2 177 260 404 5.74e-13 68.2
Msa1218420 AT5G57630.3 29.474 190 117 8 33 211 1 184 7.84e-13 67.4
Msa1218420 AT1G49180.2 33.613 119 73 3 11 126 63 178 8.77e-13 67.4
Msa1218420 AT1G63700.1 33.858 127 77 3 2 126 450 571 8.80e-13 67.8
Msa1218420 AT1G63700.2 33.858 127 77 3 2 126 450 571 8.80e-13 67.8
Msa1218420 AT1G49180.1 33.613 119 73 3 11 126 63 178 1.05e-12 67.4
Msa1218420 AT3G06030.1 25.000 224 151 7 2 211 121 341 1.91e-12 66.6
Msa1218420 AT1G73690.1 25.532 188 92 4 2 182 58 204 2.06e-12 66.2
Msa1218420 AT1G50240.3 29.600 125 85 2 2 126 53 174 2.32e-12 66.6
Msa1218420 AT1G50240.2 29.600 125 85 2 2 126 53 174 2.32e-12 66.6
Msa1218420 AT5G07070.1 22.967 209 148 5 2 200 60 265 2.95e-12 65.9
Msa1218420 AT1G71530.4 24.432 176 102 2 2 177 194 338 5.12e-12 65.1
Msa1218420 AT1G71530.3 24.432 176 102 2 2 177 194 338 5.22e-12 65.1
Msa1218420 AT5G57565.5 32.990 97 63 2 31 127 34 128 5.89e-12 62.0
Msa1218420 AT5G57565.1 32.990 97 63 2 31 127 34 128 5.89e-12 62.0
Msa1218420 AT1G71530.2 24.432 176 102 2 2 177 194 338 6.29e-12 65.1
Msa1218420 AT5G66850.2 32.576 132 75 5 1 126 395 518 8.57e-12 64.7
Msa1218420 AT5G44290.7 27.711 166 105 3 2 166 184 335 1.03e-11 64.3
Msa1218420 AT5G44290.6 27.711 166 105 3 2 166 184 335 1.04e-11 64.7
Msa1218420 AT3G21220.2 29.545 176 90 4 2 177 116 257 1.05e-11 63.9
Msa1218420 AT3G21220.1 29.545 176 90 4 2 177 116 257 1.05e-11 63.9
Msa1218420 AT5G66850.1 32.576 132 75 5 1 126 395 518 1.16e-11 64.3
Msa1218420 AT1G78290.3 29.630 189 82 8 7 186 53 199 1.19e-11 63.9
Msa1218420 AT1G78290.2 29.630 189 82 8 7 186 53 199 1.19e-11 63.9
Msa1218420 AT1G71530.1 24.432 176 102 2 2 177 194 338 1.31e-11 64.3
Msa1218420 AT2G20470.3 26.590 173 107 4 27 186 195 360 1.47e-11 63.9
Msa1218420 AT2G20470.2 26.590 173 107 4 27 186 195 360 1.54e-11 63.9
Msa1218420 AT2G20470.1 26.590 173 107 4 27 186 195 360 1.54e-11 63.9
Msa1218420 AT5G44290.2 27.108 166 106 3 2 166 184 335 1.58e-11 63.9
Msa1218420 AT5G44290.5 27.108 166 106 3 2 166 184 335 1.58e-11 63.9
Msa1218420 AT5G44290.4 27.108 166 106 3 2 166 184 335 1.58e-11 63.9
Msa1218420 AT5G44290.1 27.108 166 106 3 2 166 184 335 1.58e-11 63.9
Msa1218420 AT5G44290.3 27.108 166 106 3 2 166 184 335 1.58e-11 63.9
Msa1218420 AT1G08650.2 26.064 188 94 6 5 186 66 214 1.70e-11 62.8
Msa1218420 AT1G08650.1 26.064 188 94 6 5 186 66 214 2.17e-11 62.8
Msa1218420 AT3G53930.2 28.125 128 86 3 2 126 67 191 2.40e-11 63.5
Msa1218420 AT5G57565.4 32.979 94 61 2 31 124 34 125 2.40e-11 61.2
Msa1218420 AT3G53930.1 28.125 128 86 3 2 126 67 191 2.69e-11 63.5
Msa1218420 AT2G17700.1 25.581 172 117 5 1 165 330 497 4.24e-11 62.8
Msa1218420 AT5G03730.2 33.846 130 79 3 2 126 596 723 4.28e-11 62.8
Msa1218420 AT5G03730.1 33.846 130 79 3 2 126 596 723 4.28e-11 62.8
Msa1218420 AT5G01820.1 31.496 127 82 2 2 126 70 193 4.86e-11 62.4
Msa1218420 AT3G50310.1 33.600 125 70 4 50 161 102 226 5.47e-11 62.0
Msa1218420 AT5G39420.1 27.103 107 78 0 2 108 152 258 6.57e-11 62.0
Msa1218420 AT1G33770.1 23.864 176 103 2 2 177 188 332 6.78e-11 62.0
Msa1218420 AT4G33080.1 27.225 191 117 5 14 186 154 340 7.69e-11 62.0
Msa1218420 AT4G33080.2 27.225 191 117 5 14 186 154 340 7.83e-11 62.0
Msa1218420 AT3G58640.1 27.941 204 133 5 2 195 598 797 9.32e-11 61.6
Msa1218420 AT3G58640.2 27.941 204 133 5 2 195 598 797 9.32e-11 61.6
Msa1218420 AT1G53050.2 33.000 100 67 0 2 101 181 280 9.57e-11 61.6
Msa1218420 AT1G53050.1 33.000 100 67 0 2 101 181 280 9.57e-11 61.6

Find 52 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTTTGTACTGTATGATAT+TGG 0.249189 8_1:-81090467 Msa1218420:CDS
GTCAACGTCATCCTTTGTTT+TGG 0.250917 8_1:+81090399 None:intergenic
ATGTAGAAGTTATCCAATTC+TGG 0.313855 8_1:+81091635 None:intergenic
GCAGCAGATAGCTGGGTTAT+TGG 0.315257 8_1:-81090369 Msa1218420:CDS
TTATGCTTGTAAAATGCATT+TGG 0.329144 8_1:-81090594 Msa1218420:CDS
CGAGTAATCAACAGATTATC+AGG 0.338053 8_1:+81091119 None:intergenic
TTGAATATGTGGAAGACAAA+TGG 0.367242 8_1:-81091493 Msa1218420:CDS
CAATTCCTTTGTACCTGTGC+TGG 0.371187 8_1:-81090335 Msa1218420:CDS
TATGCTTGTAAAATGCATTT+GGG 0.380506 8_1:-81090593 Msa1218420:CDS
CTGATGTCGCAGCAGATAGC+TGG 0.389352 8_1:-81090377 Msa1218420:CDS
AGCTGGGTTATTGGAAATGA+TGG 0.391248 8_1:-81090360 Msa1218420:CDS
TACTTGCGTGATATAGTTTG+TGG 0.407512 8_1:-81091416 Msa1218420:CDS
CAGCACAGGTACAAAGGAAT+TGG 0.414844 8_1:+81090336 None:intergenic
TCAATCAGATTCACTATGTT+AGG 0.415482 8_1:+81091671 None:intergenic
ACTTTGTACTGTATGATATT+GGG 0.418226 8_1:-81090466 Msa1218420:intron
GGTGATTGATGACCCAGAAT+TGG 0.428905 8_1:-81091648 Msa1218420:CDS
CATTCAGATGCAATGAAAAC+AGG 0.432607 8_1:+81090640 None:intergenic
GCAATGAAAACAGGAGTTCC+AGG 0.441137 8_1:+81090649 None:intergenic
TGAATATGTGGAAGACAAAT+GGG 0.441978 8_1:-81091492 Msa1218420:CDS
TGTACCTGTGCTGGTGCAAA+AGG 0.464843 8_1:-81090326 Msa1218420:CDS
AAATGGGTTTGTGAAGGTTC+AGG 0.466210 8_1:-81091476 Msa1218420:CDS
GTCATGGTACAGTGAAGATA+AGG 0.482008 8_1:-81091097 Msa1218420:CDS
TGTAGAAGTTATCCAATTCT+GGG 0.482254 8_1:+81091636 None:intergenic
CAATACAGTACTTGAATATG+TGG 0.488989 8_1:-81091504 Msa1218420:intron
TCATGGTACAGTGAAGATAA+GGG 0.505025 8_1:-81091096 Msa1218420:CDS
AAGGGATTTCAGTGTCAGCC+AGG 0.505554 8_1:-81091078 Msa1218420:CDS
GTGGTAAAGCTGCGGACACA+TGG 0.519090 8_1:-81090501 Msa1218420:CDS
TGAATAAAATCAGTCAGTAT+AGG 0.525673 8_1:+81090251 None:intergenic
TATAGGTCAACGAAGCATCT+TGG 0.527956 8_1:+81090268 None:intergenic
GATATGCTTCGACGATCACC+TGG 0.533902 8_1:-81090667 Msa1218420:CDS
GAATTGGATAACTTCTACAT+GGG 0.536456 8_1:-81091632 Msa1218420:intron
TAACATAGTGAATCTGATTG+AGG 0.550540 8_1:-81091669 Msa1218420:CDS
GTTGCATTACCTCACAAGCC+TGG 0.550563 8_1:+81091060 None:intergenic
CAGTGTCAGCCAGGCTTGTG+AGG 0.561168 8_1:-81091069 Msa1218420:intron
AAAGAAATATTACATGAGCA+TGG 0.564906 8_1:+81091381 None:intergenic
TGATGTCGCAGCAGATAGCT+GGG 0.568027 8_1:-81090376 Msa1218420:CDS
AGAATTGGATAACTTCTACA+TGG 0.571002 8_1:-81091633 Msa1218420:CDS
CCTAGCAGTCTCTTCACGTA+AGG 0.574911 8_1:+81091442 None:intergenic
GCTGGGTTATTGGAAATGAT+GGG 0.595401 8_1:-81090359 Msa1218420:CDS
GCTGCGGACACATGGGCTGT+AGG 0.596139 8_1:-81090493 Msa1218420:CDS
TTGCACCAGCACAGGTACAA+AGG 0.598450 8_1:+81090330 None:intergenic
CCTTACGTGAAGAGACTGCT+AGG 0.601669 8_1:-81091442 Msa1218420:CDS
AATCTGTTGATTACTCGTCA+TGG 0.618110 8_1:-81091113 Msa1218420:CDS
CAAAAGGAAGAACTTGGTGA+AGG 0.642700 8_1:-81090310 Msa1218420:CDS
GTAACGCAGAATATAGTACA+TGG 0.644939 8_1:-81091152 Msa1218420:intron
AAGATGTAGACCCAAAACAA+AGG 0.651742 8_1:-81090410 Msa1218420:CDS
TGGTAAAGCTGCGGACACAT+GGG 0.652835 8_1:-81090500 Msa1218420:CDS
GAAGACAAATGGGTTTGTGA+AGG 0.660526 8_1:-81091482 Msa1218420:CDS
CTGGTGCAAAAGGAAGAACT+TGG 0.662500 8_1:-81090316 Msa1218420:CDS
TAATGATGTCTACGAAACGC+AGG 0.664837 8_1:-81090570 Msa1218420:CDS
TACCTACAGTGGTAAAGCTG+CGG 0.678882 8_1:-81090509 Msa1218420:CDS
GTCCGCAGCTTTACCACTGT+AGG 0.742193 8_1:+81090507 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTTTGTATTTTATC+AGG + chr8_1:81090757-81090776 None:intergenic 10.0%
!! AAATACTTAAAATATAACAA+AGG - chr8_1:81091020-81091039 Msa1218420:intron 10.0%
!!! TTTATTTTTTGTATTTTATC+AGG + chr8_1:81090757-81090776 None:intergenic 10.0%
!! AAATACTTAAAATATAACAA+AGG - chr8_1:81091020-81091039 Msa1218420:intron 10.0%
!! AAAAAAAGAAAAGCTAAATT+AGG + chr8_1:81090485-81090504 None:intergenic 15.0%
!! AAGTATTTAAATTAACATTC+AGG + chr8_1:81091008-81091027 None:intergenic 15.0%
!! AAAAAAAGAAAAGCTAAATT+AGG + chr8_1:81090485-81090504 None:intergenic 15.0%
!! AAGTATTTAAATTAACATTC+AGG + chr8_1:81091008-81091027 None:intergenic 15.0%
!! TGATAAAGAAAATAAGTGTA+TGG - chr8_1:81090267-81090286 Msa1218420:CDS 20.0%
!!! TATGGTAGATTTTAATTTGA+AGG - chr8_1:81090285-81090304 Msa1218420:CDS 20.0%
!! AAATAAGGAATATGATTACT+TGG - chr8_1:81091139-81091158 Msa1218420:CDS 20.0%
!!! TACCATTTTTTCTTTTTGTT+TGG - chr8_1:81091245-81091264 Msa1218420:intron 20.0%
!! TACCAAACAAAAAGAAAAAA+TGG + chr8_1:81091250-81091269 None:intergenic 20.0%
!!! GTATTTGTTAATGTGTTTTT+AGG - chr8_1:81091500-81091519 Msa1218420:intron 20.0%
!! TGATAAAGAAAATAAGTGTA+TGG - chr8_1:81090267-81090286 Msa1218420:CDS 20.0%
!!! TATGGTAGATTTTAATTTGA+AGG - chr8_1:81090285-81090304 Msa1218420:CDS 20.0%
!! AAATAAGGAATATGATTACT+TGG - chr8_1:81091139-81091158 Msa1218420:CDS 20.0%
!!! TACCATTTTTTCTTTTTGTT+TGG - chr8_1:81091245-81091264 Msa1218420:intron 20.0%
!! TACCAAACAAAAAGAAAAAA+TGG + chr8_1:81091250-81091269 None:intergenic 20.0%
!!! GTATTTGTTAATGTGTTTTT+AGG - chr8_1:81091500-81091519 Msa1218420:intron 20.0%
!! TATGAAAATGCTTTCTTTTC+AGG - chr8_1:81090315-81090334 Msa1218420:CDS 25.0%
!!! CTAGTTTTTTCTTTCTTTCT+TGG - chr8_1:81090435-81090454 Msa1218420:intron 25.0%
! AAAGAAATATTACATGAGCA+TGG + chr8_1:81090657-81090676 None:intergenic 25.0%
! CAAATGTATCATGTAAAGAT+TGG + chr8_1:81090681-81090700 None:intergenic 25.0%
! AACATGATTAAACTATTCCA+AGG + chr8_1:81090835-81090854 None:intergenic 25.0%
! CACACAATGTTTGAAAAATA+AGG - chr8_1:81091124-81091143 Msa1218420:CDS 25.0%
!! ATGGAACTATTAAAGTTGAT+TGG - chr8_1:81091167-81091186 Msa1218420:intron 25.0%
!! TTAAGTCAATGTTTAGTTTC+AGG + chr8_1:81091208-81091227 None:intergenic 25.0%
!! ATTTTATCATAAACTCTGCA+TGG + chr8_1:81091297-81091316 None:intergenic 25.0%
!! ATTGCATCTGAATGTATTTT+AGG - chr8_1:81091404-81091423 Msa1218420:CDS 25.0%
! TTATGCTTGTAAAATGCATT+TGG - chr8_1:81091441-81091460 Msa1218420:CDS 25.0%
! TATGCTTGTAAAATGCATTT+GGG - chr8_1:81091442-81091461 Msa1218420:CDS 25.0%
! TACTTTGTACTGTATGATAT+TGG - chr8_1:81091568-81091587 Msa1218420:intron 25.0%
! ACTTTGTACTGTATGATATT+GGG - chr8_1:81091569-81091588 Msa1218420:intron 25.0%
!! TATGAAAATGCTTTCTTTTC+AGG - chr8_1:81090315-81090334 Msa1218420:CDS 25.0%
!!! CTAGTTTTTTCTTTCTTTCT+TGG - chr8_1:81090435-81090454 Msa1218420:intron 25.0%
! AAAGAAATATTACATGAGCA+TGG + chr8_1:81090657-81090676 None:intergenic 25.0%
! CAAATGTATCATGTAAAGAT+TGG + chr8_1:81090681-81090700 None:intergenic 25.0%
! AACATGATTAAACTATTCCA+AGG + chr8_1:81090835-81090854 None:intergenic 25.0%
! CACACAATGTTTGAAAAATA+AGG - chr8_1:81091124-81091143 Msa1218420:CDS 25.0%
!! ATGGAACTATTAAAGTTGAT+TGG - chr8_1:81091167-81091186 Msa1218420:intron 25.0%
!! TTAAGTCAATGTTTAGTTTC+AGG + chr8_1:81091208-81091227 None:intergenic 25.0%
!! ATTTTATCATAAACTCTGCA+TGG + chr8_1:81091297-81091316 None:intergenic 25.0%
!! ATTGCATCTGAATGTATTTT+AGG - chr8_1:81091404-81091423 Msa1218420:CDS 25.0%
! TTATGCTTGTAAAATGCATT+TGG - chr8_1:81091441-81091460 Msa1218420:CDS 25.0%
! TATGCTTGTAAAATGCATTT+GGG - chr8_1:81091442-81091461 Msa1218420:CDS 25.0%
! TACTTTGTACTGTATGATAT+TGG - chr8_1:81091568-81091587 Msa1218420:intron 25.0%
! ACTTTGTACTGTATGATATT+GGG - chr8_1:81091569-81091588 Msa1218420:intron 25.0%
TCAATCAGATTCACTATGTT+AGG + chr8_1:81090367-81090386 None:intergenic 30.0%
TAACATAGTGAATCTGATTG+AGG - chr8_1:81090366-81090385 Msa1218420:CDS 30.0%
TGTAGAAGTTATCCAATTCT+GGG + chr8_1:81090402-81090421 None:intergenic 30.0%
ATGTAGAAGTTATCCAATTC+TGG + chr8_1:81090403-81090422 None:intergenic 30.0%
AGAATTGGATAACTTCTACA+TGG - chr8_1:81090402-81090421 Msa1218420:CDS 30.0%
GAATTGGATAACTTCTACAT+GGG - chr8_1:81090403-81090422 Msa1218420:CDS 30.0%
!! AGCTTTTCTTTTTTTGTCTG+AGG - chr8_1:81090490-81090509 Msa1218420:CDS 30.0%
CAATACAGTACTTGAATATG+TGG - chr8_1:81090531-81090550 Msa1218420:CDS 30.0%
TTGAATATGTGGAAGACAAA+TGG - chr8_1:81090542-81090561 Msa1218420:CDS 30.0%
TGAATATGTGGAAGACAAAT+GGG - chr8_1:81090543-81090562 Msa1218420:CDS 30.0%
! ACACAACTTTTGCATATCAA+TGG - chr8_1:81090708-81090727 Msa1218420:intron 30.0%
ACAATATCATCCAAGTAAAG+TGG + chr8_1:81091048-81091067 None:intergenic 30.0%
AGAAAAAGATGTATCCTAAG+CGG + chr8_1:81091082-81091101 None:intergenic 30.0%
ATATGATTACTTGGACGATA+TGG - chr8_1:81091148-81091167 Msa1218420:intron 30.0%
GACTTAATATGAAGCCTATA+TGG - chr8_1:81091322-81091341 Msa1218420:intron 30.0%
CTGCAAAATGAAAACCATAT+AGG + chr8_1:81091339-81091358 None:intergenic 30.0%
! CTATATGGTTTTCATTTTGC+AGG - chr8_1:81091337-81091356 Msa1218420:intron 30.0%
!! CATCTGAATGTATTTTAGGT+TGG - chr8_1:81091408-81091427 Msa1218420:CDS 30.0%
TCAATCAGATTCACTATGTT+AGG + chr8_1:81090367-81090386 None:intergenic 30.0%
TAACATAGTGAATCTGATTG+AGG - chr8_1:81090366-81090385 Msa1218420:CDS 30.0%
TGTAGAAGTTATCCAATTCT+GGG + chr8_1:81090402-81090421 None:intergenic 30.0%
ATGTAGAAGTTATCCAATTC+TGG + chr8_1:81090403-81090422 None:intergenic 30.0%
AGAATTGGATAACTTCTACA+TGG - chr8_1:81090402-81090421 Msa1218420:CDS 30.0%
GAATTGGATAACTTCTACAT+GGG - chr8_1:81090403-81090422 Msa1218420:CDS 30.0%
!! AGCTTTTCTTTTTTTGTCTG+AGG - chr8_1:81090490-81090509 Msa1218420:CDS 30.0%
CAATACAGTACTTGAATATG+TGG - chr8_1:81090531-81090550 Msa1218420:CDS 30.0%
TTGAATATGTGGAAGACAAA+TGG - chr8_1:81090542-81090561 Msa1218420:CDS 30.0%
TGAATATGTGGAAGACAAAT+GGG - chr8_1:81090543-81090562 Msa1218420:CDS 30.0%
! ACACAACTTTTGCATATCAA+TGG - chr8_1:81090708-81090727 Msa1218420:intron 30.0%
ACAATATCATCCAAGTAAAG+TGG + chr8_1:81091048-81091067 None:intergenic 30.0%
AGAAAAAGATGTATCCTAAG+CGG + chr8_1:81091082-81091101 None:intergenic 30.0%
ATATGATTACTTGGACGATA+TGG - chr8_1:81091148-81091167 Msa1218420:intron 30.0%
GACTTAATATGAAGCCTATA+TGG - chr8_1:81091322-81091341 Msa1218420:intron 30.0%
CTGCAAAATGAAAACCATAT+AGG + chr8_1:81091339-81091358 None:intergenic 30.0%
! CTATATGGTTTTCATTTTGC+AGG - chr8_1:81091337-81091356 Msa1218420:intron 30.0%
!! CATCTGAATGTATTTTAGGT+TGG - chr8_1:81091408-81091427 Msa1218420:CDS 30.0%
TACTTGCGTGATATAGTTTG+TGG - chr8_1:81090619-81090638 Msa1218420:CDS 35.0%
!! TTGAAGCATCGTACTGTTTA+TGG - chr8_1:81090780-81090799 Msa1218420:intron 35.0%
GTAACGCAGAATATAGTACA+TGG - chr8_1:81090883-81090902 Msa1218420:intron 35.0%
CGAGTAATCAACAGATTATC+AGG + chr8_1:81090919-81090938 None:intergenic 35.0%
! AATCTGTTGATTACTCGTCA+TGG - chr8_1:81090922-81090941 Msa1218420:intron 35.0%
TCATGGTACAGTGAAGATAA+GGG - chr8_1:81090939-81090958 Msa1218420:intron 35.0%
!! AACAAAGGTACCACTTTACT+TGG - chr8_1:81091035-81091054 Msa1218420:intron 35.0%
CATTCAGATGCAATGAAAAC+AGG + chr8_1:81091398-81091417 None:intergenic 35.0%
!!! TTTTTAGGTGTTACCTACAG+TGG - chr8_1:81091515-81091534 Msa1218420:intron 35.0%
AAGATGTAGACCCAAAACAA+AGG - chr8_1:81091625-81091644 Msa1218420:intron 35.0%
!!! TCAACGTCATCCTTTGTTTT+GGG + chr8_1:81091638-81091657 None:intergenic 35.0%
TACTTGCGTGATATAGTTTG+TGG - chr8_1:81090619-81090638 Msa1218420:CDS 35.0%
!! TTGAAGCATCGTACTGTTTA+TGG - chr8_1:81090780-81090799 Msa1218420:intron 35.0%
GTAACGCAGAATATAGTACA+TGG - chr8_1:81090883-81090902 Msa1218420:intron 35.0%
CGAGTAATCAACAGATTATC+AGG + chr8_1:81090919-81090938 None:intergenic 35.0%
! AATCTGTTGATTACTCGTCA+TGG - chr8_1:81090922-81090941 Msa1218420:intron 35.0%
TCATGGTACAGTGAAGATAA+GGG - chr8_1:81090939-81090958 Msa1218420:intron 35.0%
!! AACAAAGGTACCACTTTACT+TGG - chr8_1:81091035-81091054 Msa1218420:intron 35.0%
CATTCAGATGCAATGAAAAC+AGG + chr8_1:81091398-81091417 None:intergenic 35.0%
!!! TTTTTAGGTGTTACCTACAG+TGG - chr8_1:81091515-81091534 Msa1218420:intron 35.0%
AAGATGTAGACCCAAAACAA+AGG - chr8_1:81091625-81091644 Msa1218420:intron 35.0%
!!! TCAACGTCATCCTTTGTTTT+GGG + chr8_1:81091638-81091657 None:intergenic 35.0%
! GAAGACAAATGGGTTTGTGA+AGG - chr8_1:81090553-81090572 Msa1218420:CDS 40.0%
! AAATGGGTTTGTGAAGGTTC+AGG - chr8_1:81090559-81090578 Msa1218420:CDS 40.0%
CTCTTACTCGTTAAATGCCT+TGG - chr8_1:81090815-81090834 Msa1218420:intron 40.0%
GTCATGGTACAGTGAAGATA+AGG - chr8_1:81090938-81090957 Msa1218420:intron 40.0%
TCTGCATGGAGTATGTCAAA+GGG + chr8_1:81091283-81091302 None:intergenic 40.0%
TAATGATGTCTACGAAACGC+AGG - chr8_1:81091465-81091484 Msa1218420:CDS 40.0%
! TTGGGTGAATACCCTTTTCT+TGG - chr8_1:81091587-81091606 Msa1218420:intron 40.0%
!! GTCAACGTCATCCTTTGTTT+TGG + chr8_1:81091639-81091658 None:intergenic 40.0%
AGCTGGGTTATTGGAAATGA+TGG - chr8_1:81091675-81091694 Msa1218420:CDS 40.0%
GCTGGGTTATTGGAAATGAT+GGG - chr8_1:81091676-81091695 Msa1218420:CDS 40.0%
! CAAAAGGAAGAACTTGGTGA+AGG - chr8_1:81091725-81091744 Msa1218420:intron 40.0%
! TATAGGTCAACGAAGCATCT+TGG + chr8_1:81091770-81091789 None:intergenic 40.0%
! GAAGACAAATGGGTTTGTGA+AGG - chr8_1:81090553-81090572 Msa1218420:CDS 40.0%
! AAATGGGTTTGTGAAGGTTC+AGG - chr8_1:81090559-81090578 Msa1218420:CDS 40.0%
CTCTTACTCGTTAAATGCCT+TGG - chr8_1:81090815-81090834 Msa1218420:intron 40.0%
GTCATGGTACAGTGAAGATA+AGG - chr8_1:81090938-81090957 Msa1218420:intron 40.0%
TCTGCATGGAGTATGTCAAA+GGG + chr8_1:81091283-81091302 None:intergenic 40.0%
TAATGATGTCTACGAAACGC+AGG - chr8_1:81091465-81091484 Msa1218420:CDS 40.0%
! TTGGGTGAATACCCTTTTCT+TGG - chr8_1:81091587-81091606 Msa1218420:intron 40.0%
!! GTCAACGTCATCCTTTGTTT+TGG + chr8_1:81091639-81091658 None:intergenic 40.0%
AGCTGGGTTATTGGAAATGA+TGG - chr8_1:81091675-81091694 Msa1218420:CDS 40.0%
GCTGGGTTATTGGAAATGAT+GGG - chr8_1:81091676-81091695 Msa1218420:CDS 40.0%
! CAAAAGGAAGAACTTGGTGA+AGG - chr8_1:81091725-81091744 Msa1218420:intron 40.0%
! TATAGGTCAACGAAGCATCT+TGG + chr8_1:81091770-81091789 None:intergenic 40.0%
! GGTGATTGATGACCCAGAAT+TGG - chr8_1:81090387-81090406 Msa1218420:CDS 45.0%
! TGTATCTTCAACTGCCGCTT+AGG - chr8_1:81091065-81091084 Msa1218420:intron 45.0%
TGCATGGAGTATGTCAAAGG+GGG + chr8_1:81091281-81091300 None:intergenic 45.0%
CTGCATGGAGTATGTCAAAG+GGG + chr8_1:81091282-81091301 None:intergenic 45.0%
CTCTGCATGGAGTATGTCAA+AGG + chr8_1:81091284-81091303 None:intergenic 45.0%
GCAATGAAAACAGGAGTTCC+AGG + chr8_1:81091389-81091408 None:intergenic 45.0%
TACCTACAGTGGTAAAGCTG+CGG - chr8_1:81091526-81091545 Msa1218420:intron 45.0%
!! ACCCTTTTCTTGGTGACACA+TGG - chr8_1:81091597-81091616 Msa1218420:intron 45.0%
CCCATGTGTCACCAAGAAAA+GGG + chr8_1:81091601-81091620 None:intergenic 45.0%
!! CCCTTTTCTTGGTGACACAT+GGG - chr8_1:81091598-81091617 Msa1218420:intron 45.0%
CAGCACAGGTACAAAGGAAT+TGG + chr8_1:81091702-81091721 None:intergenic 45.0%
CAATTCCTTTGTACCTGTGC+TGG - chr8_1:81091700-81091719 Msa1218420:CDS 45.0%
CTGGTGCAAAAGGAAGAACT+TGG - chr8_1:81091719-81091738 Msa1218420:intron 45.0%
! GGTGATTGATGACCCAGAAT+TGG - chr8_1:81090387-81090406 Msa1218420:CDS 45.0%
! TGTATCTTCAACTGCCGCTT+AGG - chr8_1:81091065-81091084 Msa1218420:intron 45.0%
TGCATGGAGTATGTCAAAGG+GGG + chr8_1:81091281-81091300 None:intergenic 45.0%
CTGCATGGAGTATGTCAAAG+GGG + chr8_1:81091282-81091301 None:intergenic 45.0%
CTCTGCATGGAGTATGTCAA+AGG + chr8_1:81091284-81091303 None:intergenic 45.0%
GCAATGAAAACAGGAGTTCC+AGG + chr8_1:81091389-81091408 None:intergenic 45.0%
TACCTACAGTGGTAAAGCTG+CGG - chr8_1:81091526-81091545 Msa1218420:intron 45.0%
!! ACCCTTTTCTTGGTGACACA+TGG - chr8_1:81091597-81091616 Msa1218420:intron 45.0%
CCCATGTGTCACCAAGAAAA+GGG + chr8_1:81091601-81091620 None:intergenic 45.0%
!! CCCTTTTCTTGGTGACACAT+GGG - chr8_1:81091598-81091617 Msa1218420:intron 45.0%
CAGCACAGGTACAAAGGAAT+TGG + chr8_1:81091702-81091721 None:intergenic 45.0%
CAATTCCTTTGTACCTGTGC+TGG - chr8_1:81091700-81091719 Msa1218420:CDS 45.0%
CTGGTGCAAAAGGAAGAACT+TGG - chr8_1:81091719-81091738 Msa1218420:intron 45.0%
CCTAGCAGTCTCTTCACGTA+AGG + chr8_1:81090596-81090615 None:intergenic 50.0%
CCTTACGTGAAGAGACTGCT+AGG - chr8_1:81090593-81090612 Msa1218420:CDS 50.0%
AAGGGATTTCAGTGTCAGCC+AGG - chr8_1:81090957-81090976 Msa1218420:intron 50.0%
GTTGCATTACCTCACAAGCC+TGG + chr8_1:81090978-81090997 None:intergenic 50.0%
ATGGAGTATGTCAAAGGGGG+TGG + chr8_1:81091278-81091297 None:intergenic 50.0%
GATATGCTTCGACGATCACC+TGG - chr8_1:81091368-81091387 Msa1218420:intron 50.0%
TGGTAAAGCTGCGGACACAT+GGG - chr8_1:81091535-81091554 Msa1218420:intron 50.0%
GCCCATGTGTCACCAAGAAA+AGG + chr8_1:81091602-81091621 None:intergenic 50.0%
TGATGTCGCAGCAGATAGCT+GGG - chr8_1:81091659-81091678 Msa1218420:CDS 50.0%
GCAGCAGATAGCTGGGTTAT+TGG - chr8_1:81091666-81091685 Msa1218420:CDS 50.0%
TTGCACCAGCACAGGTACAA+AGG + chr8_1:81091708-81091727 None:intergenic 50.0%
! TGTACCTGTGCTGGTGCAAA+AGG - chr8_1:81091709-81091728 Msa1218420:intron 50.0%
! TCTTCCTTTTGCACCAGCAC+AGG + chr8_1:81091716-81091735 None:intergenic 50.0%
CCTAGCAGTCTCTTCACGTA+AGG + chr8_1:81090596-81090615 None:intergenic 50.0%
CCTTACGTGAAGAGACTGCT+AGG - chr8_1:81090593-81090612 Msa1218420:CDS 50.0%
AAGGGATTTCAGTGTCAGCC+AGG - chr8_1:81090957-81090976 Msa1218420:intron 50.0%
GTTGCATTACCTCACAAGCC+TGG + chr8_1:81090978-81090997 None:intergenic 50.0%
ATGGAGTATGTCAAAGGGGG+TGG + chr8_1:81091278-81091297 None:intergenic 50.0%
GATATGCTTCGACGATCACC+TGG - chr8_1:81091368-81091387 Msa1218420:intron 50.0%
TGGTAAAGCTGCGGACACAT+GGG - chr8_1:81091535-81091554 Msa1218420:intron 50.0%
GCCCATGTGTCACCAAGAAA+AGG + chr8_1:81091602-81091621 None:intergenic 50.0%
TGATGTCGCAGCAGATAGCT+GGG - chr8_1:81091659-81091678 Msa1218420:CDS 50.0%
GCAGCAGATAGCTGGGTTAT+TGG - chr8_1:81091666-81091685 Msa1218420:CDS 50.0%
TTGCACCAGCACAGGTACAA+AGG + chr8_1:81091708-81091727 None:intergenic 50.0%
! TGTACCTGTGCTGGTGCAAA+AGG - chr8_1:81091709-81091728 Msa1218420:intron 50.0%
! TCTTCCTTTTGCACCAGCAC+AGG + chr8_1:81091716-81091735 None:intergenic 50.0%
GTCCGCAGCTTTACCACTGT+AGG + chr8_1:81091531-81091550 None:intergenic 55.0%
GTGGTAAAGCTGCGGACACA+TGG - chr8_1:81091534-81091553 Msa1218420:intron 55.0%
CTGATGTCGCAGCAGATAGC+TGG - chr8_1:81091658-81091677 Msa1218420:CDS 55.0%
GTCCGCAGCTTTACCACTGT+AGG + chr8_1:81091531-81091550 None:intergenic 55.0%
GTGGTAAAGCTGCGGACACA+TGG - chr8_1:81091534-81091553 Msa1218420:intron 55.0%
CTGATGTCGCAGCAGATAGC+TGG - chr8_1:81091658-81091677 Msa1218420:CDS 55.0%
CAGTGTCAGCCAGGCTTGTG+AGG - chr8_1:81090966-81090985 Msa1218420:intron 60.0%
CAGTGTCAGCCAGGCTTGTG+AGG - chr8_1:81090966-81090985 Msa1218420:intron 60.0%
! GCTGCGGACACATGGGCTGT+AGG - chr8_1:81091542-81091561 Msa1218420:intron 65.0%
! GCTGCGGACACATGGGCTGT+AGG - chr8_1:81091542-81091561 Msa1218420:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 81090260 81091797 81090260 ID=Msa1218420;Name=Msa1218420
chr8_1 mRNA 81090260 81091797 81090260 ID=Msa1218420-mRNA-1;Parent=Msa1218420;Name=Msa1218420-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0|0.6|0.33|0.83|0.8|0.66|6|0|238
chr8_1 exon 81091792 81091797 81091792 ID=Msa1218420-mRNA-1:exon:28660;Parent=Msa1218420-mRNA-1
chr8_1 exon 81091633 81091720 81091633 ID=Msa1218420-mRNA-1:exon:28659;Parent=Msa1218420-mRNA-1
chr8_1 exon 81091394 81091518 81091394 ID=Msa1218420-mRNA-1:exon:28658;Parent=Msa1218420-mRNA-1
chr8_1 exon 81091070 81091165 81091070 ID=Msa1218420-mRNA-1:exon:28657;Parent=Msa1218420-mRNA-1
chr8_1 exon 81090467 81090698 81090467 ID=Msa1218420-mRNA-1:exon:28656;Parent=Msa1218420-mRNA-1
chr8_1 exon 81090260 81090429 81090260 ID=Msa1218420-mRNA-1:exon:28655;Parent=Msa1218420-mRNA-1
chr8_1 CDS 81091792 81091797 81091792 ID=Msa1218420-mRNA-1:cds;Parent=Msa1218420-mRNA-1
chr8_1 CDS 81091633 81091720 81091633 ID=Msa1218420-mRNA-1:cds;Parent=Msa1218420-mRNA-1
chr8_1 CDS 81091394 81091518 81091394 ID=Msa1218420-mRNA-1:cds;Parent=Msa1218420-mRNA-1
chr8_1 CDS 81091070 81091165 81091070 ID=Msa1218420-mRNA-1:cds;Parent=Msa1218420-mRNA-1
chr8_1 CDS 81090467 81090698 81090467 ID=Msa1218420-mRNA-1:cds;Parent=Msa1218420-mRNA-1
chr8_1 CDS 81090260 81090429 81090260 ID=Msa1218420-mRNA-1:cds;Parent=Msa1218420-mRNA-1
Gene Sequence

>Msa1218420

ATGAAGGTTTTCATTATGAAAATGCTGCAACATCCTAACATAGTGAATCTGATTGAGGTGATTGATGACCCAGAATTGGATAACTTCTACATGGTACTTGAATATGTGGAAGACAAATGGGTTTGTGAAGGTTCAGGTCGAGCTTGTGCCTTACGTGAAGAGACTGCTAGGAGATACTTGCGTGATATAGTTTGTGGATTAATGTATCTCCATGCTCATAATATAGTACATGGAGATATCAAGCCTGATAATCTGTTGATTACTCGTCATGGTACAGTGAAGATAAGGGATTTCAGTGTCAGCCAGGCTTGTGAGGATGATAATGATATGCTTCGACGATCACCTGGAACTCCTGTTTTCATTGCATCTGAATGTATTTTAGGTTGGTGTTTTCATTTTATGCTTGTAAAATGCATTTGGGTAATGATGTCTACGAAACGCAGGTTCTCACACTTTGTATTTGTTAATGTGTTTTTAGGTGTTACCTACAGTGGTAAAGCTGCGGACACATGGGCTGTAGGAGTTACTTTGTACTGTATGATATTGGATGTAGACCCAAAACAAAGGATGACGTTGACTGATGTCGCAGCAGATAGCTGGGTTATTGGAAATGATGGGCCAATTCCTTTGTACCTGTGCTGGTGCAAAAGGAAGAACTTGGTGAAGGAAGACAGTGATGAGAGCAACCAAGATGCTTCGTTGACCTATACTGACTGA
Protein sequence

>Msa1218420

MKVFIMKMLQHPNIVNLIEVIDDPELDNFYMVLEYVEDKWVCEGSGRACALREETARRYLRDIVCGLMYLHAHNIVHGDIKPDNLLITRHGTVKIRDFSVSQACEDDNDMLRRSPGTPVFIASECILGWCFHFMLVKCIWVMMSTKRRFSHFVFVNVFLGVTYSGKAADTWAVGVTLYCMILDVDPKQRMTLTDVAADSWVIGNDGPIPLYLCWCKRKNLVKEDSDESNQDASLTYTD*