AlfalfaGEDB | Msa1220770

M. sativa cultivar zhongmu-4 / Msa1220770

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141
PFAM: PF00642.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1220770	XP_003609277.1	77.876	113	25	0	1	113	43	155	8.98e-58	190

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1220770	sp\|Q9LT81\|C3H39_ARATH	47.287	129	49	1	4	113	95	223	7.21e-33	121

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa1220770	TF	C3H

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1220770	MtrunA17_Chr4g0063391	77.876	113	25	0	1	113	43	155	1.53e-61	187
Msa1220770	MtrunA17_Chr4g0063371	68.000	125	26	2	1	125	51	161	4.88e-54	169
Msa1220770	MtrunA17_Chr4g0063361	61.947	113	43	0	1	113	71	183	2.43e-46	150
Msa1220770	MtrunA17_Chr4g0063401	60.833	120	40	2	1	113	65	184	8.81e-44	143
Msa1220770	MtrunA17_Chr3g0098251	53.636	110	45	2	4	113	25	128	9.60e-35	119
Msa1220770	MtrunA17_Chr8g0360671	55.000	80	30	2	34	113	40	113	2.15e-23	89.0
Msa1220770	MtrunA17_Chr8g0366501	32.432	111	59	1	12	106	91	201	2.73e-14	67.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1220770	AT3G19360.1	47.287	129	49	1	4	113	95	223	7.33e-34	121
Msa1220770	AT3G19360.2	47.287	129	49	1	4	113	95	223	7.33e-34	121
Msa1220770	AT1G32360.1	32.759	116	57	3	12	106	90	205	8.23e-15	69.7

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Find 29 sgRNAs with CRISPR-Local

Find 31 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACGAAGATCAACTGCAGCT+GGG	0.593604	8_1:+84075719	Msa1220770:CDS
AATTTACAGTTATCTCTATA+TGG	0.333739	8_1:-84075815	None:intergenic
ACAAGCACCAAATCTGAACT+CGG	0.659308	8_1:-84075609	None:intergenic
ACTGTGCAGGATCTTCATGA+AGG	0.599205	8_1:-84075838	None:intergenic
ACTTATCGGAACTAATAATT+TGG	0.230797	8_1:+84075891	Msa1220770:CDS
AGATTTGGTGCTTGTAGAAA+CGG	0.437088	8_1:+84075617	Msa1220770:CDS
AGCTTCTGCAAATTTGGTGG+TGG	0.473172	8_1:-84075683	None:intergenic
ATCATGGAGCTGAAGAGATA+AGG	0.532117	8_1:+84075657	Msa1220770:CDS
ATCGGAACTAATAATTTGGA+AGG	0.541233	8_1:+84075895	Msa1220770:CDS
ATGAAGATCCTGCACAGTTT+AGG	0.265678	8_1:+84075843	Msa1220770:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAGTACTCTCTTGATTTCA+AGG	-	chr8_1:84075876-84075895	None:intergenic	30.0%
ATCGGAACTAATAATTTGGA+AGG	+	chr8_1:84075895-84075914	Msa1220770:CDS	30.0%
ATTTGTACCGAGTTCAGATT+TGG	+	chr8_1:84075602-84075621	Msa1220770:CDS	35.0%
TAATAATTTGGAAGGCAGCA+GGG	+	chr8_1:84075903-84075922	Msa1220770:CDS	35.0%
ACAAGCACCAAATCTGAACT+CGG	-	chr8_1:84075612-84075631	None:intergenic	40.0%
ATCATGGAGCTGAAGAGATA+AGG	+	chr8_1:84075657-84075676	Msa1220770:CDS	40.0%
ATGAAGATCCTGCACAGTTT+AGG	+	chr8_1:84075843-84075862	Msa1220770:CDS	40.0%
TGAAGATCCTGCACAGTTTA+GGG	+	chr8_1:84075844-84075863	Msa1220770:CDS	40.0%
CTAATAATTTGGAAGGCAGC+AGG	+	chr8_1:84075902-84075921	Msa1220770:CDS	40.0%
CCTAGCTTCTGCAAATTTGG+TGG	-	chr8_1:84075689-84075708	None:intergenic	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	84075551	84075931	84075551	ID=Msa1220770;Name=Msa1220770
chr8_1	mRNA	84075551	84075931	84075551	ID=Msa1220770-mRNA-1;Parent=Msa1220770;Name=Msa1220770-mRNA-1;_AED=0.39;_eAED=0.41;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|126
chr8_1	exon	84075551	84075931	84075551	ID=Msa1220770-mRNA-1:exon:30153;Parent=Msa1220770-mRNA-1
chr8_1	CDS	84075551	84075931	84075551	ID=Msa1220770-mRNA-1:cds;Parent=Msa1220770-mRNA-1

Gene Sequence	>Msa1220770 ATGGCCTTGCCTCAATCAAACAAATCAGAGCACATTTTTTACAAAACACGAATTTGTACCGAGTTCAGATTTGGTGCTTGTAGAAACGGAAAAAATTGCAACTTTGATCATGGAGCTGAAGAGATAAGGCAACCACCACCAAATTTGCAGAAGCTAGGTGGTCCGTGCAACGAAGATCAACTGCAGCTGGGAAATCAAGTTGAAGATGAAAAAATCATACAAAGGATGAAACTGTGCAAGAAGTATTGCAATGGGGAGGAATGTCCATATAGAGATAACTGTAAATTCCTTCATGAAGATCCTGCACAGTTTAGGGATGATTCCTTGAAATCAAGAGAGTACTTATCGGAACTAATAATTTGGAAGGCAGCAGGGCTGTGA
Protein sequence	>Msa1220770 MALPQSNKSEHIFYKTRICTEFRFGACRNGKNCNFDHGAEEIRQPPPNLQKLGGPCNEDQLQLGNQVEDEKIIQRMKLCKKYCNGEECPYRDNCKFLHEDPAQFRDDSLKSREYLSELIIWKAAGL*