Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1226170 | XP_003629569.1 | 80.861 | 209 | 31 | 1 | 1 | 200 | 1 | 209 | 5.88e-115 | 337 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1226170 | sp|Q9FKZ3|LBD36_ARATH | 49.606 | 127 | 62 | 2 | 8 | 134 | 7 | 131 | 5.52e-34 | 126 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa1226170 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1226170 | MtrunA17_Chr8g0374581 | 80.861 | 209 | 31 | 1 | 1 | 200 | 1 | 209 | 5.41e-119 | 337 |
| Msa1226170 | MtrunA17_Chr8g0374601 | 52.717 | 184 | 81 | 3 | 1 | 180 | 19 | 200 | 2.91e-58 | 185 |
| Msa1226170 | MtrunA17_Chr8g0374591 | 56.667 | 120 | 51 | 1 | 1 | 120 | 1 | 119 | 9.93e-44 | 143 |
| Msa1226170 | MtrunA17_Chr3g0115431 | 57.658 | 111 | 46 | 1 | 8 | 118 | 9 | 118 | 5.62e-39 | 134 |
| Msa1226170 | MtrunA17_Chr5g0402611 | 52.066 | 121 | 57 | 1 | 1 | 121 | 1 | 120 | 2.73e-37 | 132 |
| Msa1226170 | MtrunA17_Chr3g0097221 | 44.172 | 163 | 66 | 4 | 8 | 146 | 7 | 168 | 7.54e-36 | 127 |
| Msa1226170 | MtrunA17_Chr3g0106101 | 50.000 | 102 | 50 | 1 | 8 | 109 | 7 | 107 | 2.06e-32 | 115 |
| Msa1226170 | MtrunA17_Chr5g0437571 | 50.980 | 102 | 49 | 1 | 8 | 109 | 6 | 106 | 9.94e-32 | 113 |
| Msa1226170 | MtrunA17_Chr4g0058651 | 50.476 | 105 | 51 | 1 | 8 | 112 | 11 | 114 | 5.29e-31 | 112 |
| Msa1226170 | MtrunA17_Chr3g0114061 | 47.706 | 109 | 56 | 1 | 1 | 109 | 1 | 108 | 2.95e-30 | 109 |
| Msa1226170 | MtrunA17_Chr3g0117121 | 48.182 | 110 | 56 | 1 | 8 | 117 | 10 | 118 | 6.74e-30 | 109 |
| Msa1226170 | MtrunA17_Chr2g0311601 | 49.524 | 105 | 52 | 1 | 6 | 110 | 11 | 114 | 8.01e-30 | 108 |
| Msa1226170 | MtrunA17_Chr7g0227511 | 49.524 | 105 | 52 | 1 | 8 | 112 | 11 | 114 | 9.90e-30 | 108 |
| Msa1226170 | MtrunA17_Chr3g0129071 | 50.467 | 107 | 52 | 1 | 6 | 112 | 45 | 150 | 3.78e-29 | 108 |
| Msa1226170 | MtrunA17_Chr4g0030001 | 46.667 | 105 | 56 | 0 | 5 | 109 | 21 | 125 | 3.86e-29 | 107 |
| Msa1226170 | MtrunA17_Chr5g0438091 | 50.476 | 105 | 51 | 1 | 8 | 112 | 39 | 142 | 7.12e-29 | 107 |
| Msa1226170 | MtrunA17_Chr6g0449641 | 48.077 | 104 | 53 | 1 | 8 | 111 | 9 | 111 | 2.60e-28 | 104 |
| Msa1226170 | MtrunA17_Chr4g0043421 | 50.495 | 101 | 49 | 1 | 8 | 108 | 15 | 114 | 1.45e-27 | 103 |
| Msa1226170 | MtrunA17_Chr5g0432451 | 52.336 | 107 | 50 | 1 | 6 | 112 | 41 | 146 | 1.50e-27 | 104 |
| Msa1226170 | MtrunA17_Chr5g0444351 | 46.078 | 102 | 54 | 1 | 9 | 110 | 6 | 106 | 3.26e-27 | 101 |
| Msa1226170 | MtrunA17_Chr7g0225111 | 45.370 | 108 | 58 | 1 | 5 | 112 | 2 | 108 | 3.28e-27 | 100 |
| Msa1226170 | MtrunA17_Chr6g0449651 | 46.667 | 105 | 55 | 1 | 8 | 112 | 67 | 170 | 4.54e-27 | 102 |
| Msa1226170 | MtrunA17_Chr1g0200201 | 49.020 | 102 | 51 | 1 | 9 | 110 | 73 | 173 | 5.45e-27 | 103 |
| Msa1226170 | MtrunA17_Chr8g0353981 | 49.091 | 110 | 55 | 1 | 8 | 117 | 7 | 115 | 2.93e-26 | 101 |
| Msa1226170 | MtrunA17_Chr5g0437401 | 45.631 | 103 | 55 | 1 | 9 | 111 | 12 | 113 | 4.10e-25 | 97.1 |
| Msa1226170 | MtrunA17_Chr3g0113891 | 47.959 | 98 | 50 | 1 | 9 | 106 | 15 | 111 | 5.55e-24 | 94.4 |
| Msa1226170 | MtrunA17_Chr6g0460951 | 43.519 | 108 | 59 | 2 | 3 | 109 | 35 | 141 | 2.19e-23 | 93.6 |
| Msa1226170 | MtrunA17_Chr4g0055441 | 43.689 | 103 | 56 | 2 | 9 | 110 | 3 | 104 | 5.26e-22 | 88.2 |
| Msa1226170 | MtrunA17_Chr4g0040831 | 40.594 | 101 | 59 | 1 | 8 | 108 | 15 | 114 | 3.49e-21 | 87.4 |
| Msa1226170 | MtrunA17_Chr7g0260971 | 41.667 | 108 | 61 | 2 | 8 | 114 | 14 | 120 | 3.74e-21 | 87.4 |
| Msa1226170 | MtrunA17_Chr8g0351701 | 41.509 | 106 | 60 | 2 | 8 | 112 | 23 | 127 | 1.70e-20 | 86.3 |
| Msa1226170 | MtrunA17_Chr7g0245871 | 43.689 | 103 | 56 | 2 | 8 | 109 | 27 | 128 | 3.23e-20 | 85.5 |
| Msa1226170 | MtrunA17_Chr1g0184281 | 35.862 | 145 | 74 | 5 | 8 | 138 | 15 | 154 | 5.20e-20 | 84.3 |
| Msa1226170 | MtrunA17_Chr6g0452691 | 40.777 | 103 | 59 | 2 | 9 | 110 | 10 | 111 | 2.98e-19 | 81.6 |
| Msa1226170 | MtrunA17_Chr1g0184271 | 42.000 | 100 | 56 | 2 | 8 | 106 | 12 | 110 | 1.53e-18 | 80.9 |
| Msa1226170 | MtrunA17_Chr8g0351721 | 43.269 | 104 | 57 | 2 | 8 | 110 | 18 | 120 | 6.45e-18 | 79.0 |
| Msa1226170 | MtrunA17_Chr7g0261031 | 32.903 | 155 | 87 | 5 | 8 | 158 | 8 | 149 | 6.85e-18 | 79.0 |
| Msa1226170 | MtrunA17_Chr6g0460941 | 41.489 | 94 | 53 | 2 | 4 | 96 | 3 | 95 | 6.95e-18 | 75.5 |
| Msa1226170 | MtrunA17_Chr6g0452671 | 34.351 | 131 | 82 | 2 | 7 | 134 | 10 | 139 | 7.83e-18 | 78.6 |
| Msa1226170 | MtrunA17_Chr6g0452661 | 38.679 | 106 | 60 | 3 | 5 | 106 | 3 | 107 | 8.28e-18 | 79.3 |
| Msa1226170 | MtrunA17_Chr5g0439111 | 40.909 | 110 | 60 | 3 | 5 | 110 | 3 | 111 | 9.10e-18 | 79.0 |
| Msa1226170 | MtrunA17_Chr4g0059901 | 40.594 | 101 | 59 | 1 | 9 | 109 | 11 | 110 | 1.07e-17 | 79.3 |
| Msa1226170 | MtrunA17_Chr5g0435641 | 40.000 | 95 | 55 | 2 | 9 | 102 | 8 | 101 | 3.61e-17 | 76.3 |
| Msa1226170 | MtrunA17_Chr7g0245861 | 44.444 | 81 | 43 | 1 | 8 | 86 | 12 | 92 | 1.50e-15 | 70.9 |
| Msa1226170 | MtrunA17_Chr8g0342351 | 35.644 | 101 | 57 | 2 | 9 | 109 | 13 | 105 | 1.93e-14 | 70.1 |
| Msa1226170 | MtrunA17_Chr2g0330201 | 33.654 | 104 | 68 | 1 | 7 | 110 | 18 | 120 | 3.42e-14 | 70.1 |
| Msa1226170 | MtrunA17_Chr4g0046201 | 39.241 | 79 | 47 | 1 | 9 | 87 | 7 | 84 | 7.45e-14 | 68.6 |
| Msa1226170 | MtrunA17_Chr2g0326041 | 53.571 | 56 | 24 | 2 | 1 | 55 | 25 | 79 | 4.90e-13 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1226170 | AT5G66870.1 | 49.606 | 127 | 62 | 2 | 8 | 134 | 7 | 131 | 5.61e-35 | 126 |
| Msa1226170 | AT2G23660.2 | 51.351 | 111 | 53 | 1 | 8 | 118 | 5 | 114 | 4.02e-34 | 124 |
| Msa1226170 | AT2G23660.3 | 51.351 | 111 | 53 | 1 | 8 | 118 | 5 | 114 | 4.02e-34 | 124 |
| Msa1226170 | AT2G23660.1 | 51.351 | 111 | 53 | 1 | 8 | 118 | 5 | 114 | 4.02e-34 | 124 |
| Msa1226170 | AT1G16530.1 | 50.000 | 104 | 52 | 0 | 6 | 109 | 12 | 115 | 9.10e-32 | 114 |
| Msa1226170 | AT2G30130.1 | 50.000 | 102 | 50 | 1 | 8 | 109 | 8 | 108 | 3.38e-30 | 110 |
| Msa1226170 | AT1G07900.1 | 48.113 | 106 | 54 | 1 | 5 | 110 | 30 | 134 | 6.41e-30 | 110 |
| Msa1226170 | AT3G27650.1 | 48.571 | 105 | 53 | 1 | 8 | 112 | 39 | 142 | 2.08e-29 | 107 |
| Msa1226170 | AT5G63090.4 | 48.571 | 105 | 53 | 1 | 8 | 112 | 11 | 114 | 2.91e-29 | 108 |
| Msa1226170 | AT5G63090.3 | 48.571 | 105 | 53 | 1 | 8 | 112 | 11 | 114 | 2.91e-29 | 108 |
| Msa1226170 | AT5G63090.2 | 48.571 | 105 | 53 | 1 | 8 | 112 | 11 | 114 | 2.91e-29 | 108 |
| Msa1226170 | AT5G63090.1 | 48.571 | 105 | 53 | 1 | 8 | 112 | 11 | 114 | 2.91e-29 | 108 |
| Msa1226170 | AT2G28500.1 | 47.170 | 106 | 55 | 1 | 5 | 110 | 52 | 156 | 4.32e-29 | 108 |
| Msa1226170 | AT2G40470.2 | 47.244 | 127 | 64 | 2 | 6 | 130 | 18 | 143 | 9.94e-29 | 107 |
| Msa1226170 | AT2G30340.2 | 48.598 | 107 | 54 | 1 | 6 | 112 | 51 | 156 | 1.93e-28 | 108 |
| Msa1226170 | AT2G30340.1 | 46.281 | 121 | 62 | 2 | 6 | 124 | 50 | 169 | 2.24e-28 | 108 |
| Msa1226170 | AT2G40470.1 | 47.244 | 127 | 64 | 2 | 6 | 130 | 43 | 168 | 2.45e-28 | 107 |
| Msa1226170 | AT1G65620.1 | 54.286 | 105 | 47 | 1 | 8 | 112 | 9 | 112 | 3.77e-28 | 105 |
| Msa1226170 | AT1G65620.4 | 54.286 | 105 | 47 | 1 | 8 | 112 | 9 | 112 | 3.77e-28 | 105 |
| Msa1226170 | AT1G65620.3 | 54.286 | 105 | 47 | 1 | 8 | 112 | 9 | 112 | 3.77e-28 | 105 |
| Msa1226170 | AT1G65620.5 | 54.286 | 105 | 47 | 1 | 8 | 112 | 9 | 112 | 3.77e-28 | 105 |
| Msa1226170 | AT1G65620.2 | 54.286 | 105 | 47 | 1 | 8 | 112 | 9 | 112 | 3.77e-28 | 105 |
| Msa1226170 | AT1G31320.1 | 56.818 | 88 | 37 | 1 | 8 | 95 | 13 | 99 | 1.08e-27 | 103 |
| Msa1226170 | AT3G26660.1 | 43.137 | 102 | 57 | 1 | 9 | 110 | 6 | 106 | 4.25e-25 | 95.5 |
| Msa1226170 | AT3G26620.1 | 43.137 | 102 | 57 | 1 | 9 | 110 | 6 | 106 | 4.68e-25 | 95.5 |
| Msa1226170 | AT3G11090.1 | 45.192 | 104 | 56 | 1 | 9 | 112 | 12 | 114 | 1.68e-23 | 92.8 |
| Msa1226170 | AT3G50510.1 | 41.818 | 110 | 63 | 1 | 3 | 112 | 7 | 115 | 2.20e-23 | 93.2 |
| Msa1226170 | AT3G50510.2 | 41.818 | 110 | 63 | 1 | 3 | 112 | 7 | 115 | 2.20e-23 | 93.2 |
| Msa1226170 | AT4G00210.1 | 45.192 | 104 | 55 | 2 | 8 | 110 | 11 | 113 | 8.88e-21 | 87.0 |
| Msa1226170 | AT3G03760.1 | 43.689 | 103 | 56 | 2 | 8 | 109 | 51 | 152 | 1.59e-20 | 87.4 |
| Msa1226170 | AT3G47870.1 | 39.423 | 104 | 62 | 1 | 9 | 112 | 37 | 139 | 1.65e-20 | 88.2 |
| Msa1226170 | AT2G42430.1 | 39.623 | 106 | 62 | 2 | 8 | 112 | 15 | 119 | 2.58e-19 | 83.6 |
| Msa1226170 | AT3G58190.1 | 42.157 | 102 | 57 | 2 | 8 | 108 | 11 | 111 | 7.22e-19 | 82.0 |
| Msa1226170 | AT2G42440.1 | 36.066 | 122 | 75 | 3 | 8 | 128 | 7 | 126 | 1.17e-18 | 82.0 |
| Msa1226170 | AT2G45410.1 | 39.437 | 142 | 62 | 5 | 11 | 151 | 19 | 137 | 2.91e-18 | 79.7 |
| Msa1226170 | AT5G35900.1 | 27.805 | 205 | 120 | 5 | 9 | 201 | 6 | 194 | 3.80e-17 | 77.0 |
| Msa1226170 | AT4G00220.1 | 40.594 | 101 | 58 | 2 | 11 | 110 | 20 | 119 | 2.04e-16 | 75.5 |
| Msa1226170 | AT1G06280.1 | 41.573 | 89 | 51 | 1 | 8 | 96 | 24 | 111 | 4.21e-16 | 74.3 |
| Msa1226170 | AT2G45420.1 | 38.235 | 102 | 61 | 2 | 11 | 111 | 40 | 140 | 7.58e-16 | 74.7 |
| Msa1226170 | AT3G13850.1 | 33.962 | 106 | 69 | 1 | 9 | 114 | 37 | 141 | 1.29e-15 | 73.9 |
| Msa1226170 | AT1G72980.1 | 37.255 | 102 | 63 | 1 | 8 | 109 | 13 | 113 | 2.47e-15 | 72.4 |
| Msa1226170 | AT5G06080.1 | 35.849 | 106 | 66 | 2 | 8 | 112 | 7 | 111 | 9.42e-15 | 70.1 |
| Msa1226170 | AT2G31310.1 | 34.286 | 105 | 67 | 2 | 8 | 111 | 7 | 110 | 8.93e-14 | 67.4 |
Find 54 sgRNAs with CRISPR-Local
Find 58 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTTTGAGGGACAATGTTTA+TGG | 0.203988 | 8_2:+12348 | Msa1226170:CDS |
| GTCTGTTTCTTGCAATAGTT+TGG | 0.261794 | 8_2:-12274 | None:intergenic |
| CAAACAAGTCGCTGATTCTT+TGG | 0.280466 | 8_2:+12308 | Msa1226170:CDS |
| TTCAACTATTCTTGTTGATC+TGG | 0.304345 | 8_2:-12765 | None:intergenic |
| CTGTCCAATCCTGATCGTTT+CGG | 0.322703 | 8_2:+12486 | Msa1226170:CDS |
| TATTGAAAGAAAAGATTGTT+AGG | 0.385848 | 8_2:+12610 | Msa1226170:CDS |
| AACCTCGTACACTTAGTGTT+TGG | 0.411671 | 8_2:+12237 | Msa1226170:CDS |
| CTTTCTTGAAAAGACATTGA+AGG | 0.413713 | 8_2:+12389 | Msa1226170:CDS |
| CGAAGCTGAGGCACGTTTGA+GGG | 0.455458 | 8_2:+12335 | Msa1226170:CDS |
| GGTGGAGAGGGACAACATAT+TGG | 0.461387 | 8_2:+12663 | Msa1226170:CDS |
| GGTGCAAAGCCGAAACGATC+AGG | 0.465489 | 8_2:-12495 | None:intergenic |
| AAACGTTGTGGGTTGTCCGC+TGG | 0.468485 | 8_2:-12213 | None:intergenic |
| GACAATGTTTATGGCTGTGT+TGG | 0.469619 | 8_2:+12357 | Msa1226170:CDS |
| CGGTTGCCAGATTAAAGTGC+AGG | 0.478440 | 8_2:+12716 | Msa1226170:CDS |
| ATAGAGTTGATCCCGGTGTC+GGG | 0.478762 | 8_2:-12633 | None:intergenic |
| ATCAACTCTATTGGTGGTGG+TGG | 0.484132 | 8_2:+12645 | Msa1226170:CDS |
| GGGTTGTCCGCTGGAAAGTA+AGG | 0.487972 | 8_2:-12204 | None:intergenic |
| AGAACCTCTTGAATGATCTC+AGG | 0.498563 | 8_2:-12465 | None:intergenic |
| GACACCGGGATCAACTCTAT+TGG | 0.505345 | 8_2:+12636 | Msa1226170:CDS |
| TGATGCTTGCATGCTGCACA+CGG | 0.515414 | 8_2:-12144 | None:intergenic |
| CTCTATTGGTGGTGGTGGAG+AGG | 0.524221 | 8_2:+12650 | Msa1226170:CDS |
| AATCAGCGACTTGTTTGCGA+TGG | 0.533026 | 8_2:-12302 | None:intergenic |
| CTTGAATGATCTCAGGATCA+AGG | 0.539423 | 8_2:-12458 | None:intergenic |
| TCTATTGGTGGTGGTGGAGA+GGG | 0.541503 | 8_2:+12651 | Msa1226170:CDS |
| GTCGTCAACTGATCAAAAGT+TGG | 0.547342 | 8_2:-12564 | None:intergenic |
| AATAGAGTTGATCCCGGTGT+CGG | 0.551053 | 8_2:-12634 | None:intergenic |
| ACCGGGATCAACTCTATTGG+TGG | 0.553937 | 8_2:+12639 | Msa1226170:CDS |
| CTTGACAATGGCAGCACTAG+CGG | 0.562043 | 8_2:+12696 | Msa1226170:CDS |
| ACGAAGCTGAGGCACGTTTG+AGG | 0.564133 | 8_2:+12334 | Msa1226170:CDS |
| CATGCAAGCATCAACGTCGA+AGG | 0.568494 | 8_2:+12154 | Msa1226170:CDS |
| TGTACGAGGTTGAAACGTTG+TGG | 0.572380 | 8_2:-12225 | None:intergenic |
| ATCAGCGACTTGTTTGCGAT+GGG | 0.575116 | 8_2:-12301 | None:intergenic |
| GGTGCTCCTTCTCTTGACAA+TGG | 0.575384 | 8_2:+12684 | Msa1226170:CDS |
| TTCTTTGGTGTACGAAGCTG+AGG | 0.576999 | 8_2:+12323 | Msa1226170:CDS |
| TGATCCTGAGATCATTCAAG+AGG | 0.583673 | 8_2:+12461 | Msa1226170:CDS |
| AAAGCCGAAACGATCAGGAT+TGG | 0.585751 | 8_2:-12490 | None:intergenic |
| TGTTCAAGATGAACTCAAGA+AGG | 0.590687 | 8_2:+12413 | Msa1226170:CDS |
| GGGATCAACTCTATTGGTGG+TGG | 0.590748 | 8_2:+12642 | Msa1226170:CDS |
| GTCAACTGATCAAAAGTTGG+TGG | 0.590790 | 8_2:-12561 | None:intergenic |
| AAGATTGTTAGGCCCGACAC+CGG | 0.593658 | 8_2:+12621 | Msa1226170:CDS |
| TCGTACACTTAGTGTTTGGA+AGG | 0.594928 | 8_2:+12241 | Msa1226170:CDS |
| GTACGAGGTTGAAACGTTGT+GGG | 0.597027 | 8_2:-12224 | None:intergenic |
| GTGCTGCCATTGTCAAGAGA+AGG | 0.597898 | 8_2:-12690 | None:intergenic |
| GGTTGCCAGATTAAAGTGCA+GGG | 0.607171 | 8_2:+12717 | Msa1226170:CDS |
| CCGCTGGAAAGTAAGGAGCT+AGG | 0.607576 | 8_2:-12197 | None:intergenic |
| AGATTGTTAGGCCCGACACC+GGG | 0.617611 | 8_2:+12622 | Msa1226170:CDS |
| ACCACCAATAGAGTTGATCC+CGG | 0.637012 | 8_2:-12640 | None:intergenic |
| CCTAGCTCCTTACTTTCCAG+CGG | 0.652064 | 8_2:+12197 | Msa1226170:CDS |
| TGAGAAACAAGATTTCCTTG+TGG | 0.660079 | 8_2:-12534 | None:intergenic |
| GATGCTTGCATGCTGCACAC+GGG | 0.671194 | 8_2:-12143 | None:intergenic |
| TTGCCAGATTAAAGTGCAGG+GGG | 0.671609 | 8_2:+12719 | Msa1226170:CDS |
| GTTGCCAGATTAAAGTGCAG+GGG | 0.677079 | 8_2:+12718 | Msa1226170:CDS |
| AGCCCTAATCAAAATCCACA+AGG | 0.702653 | 8_2:+12519 | Msa1226170:CDS |
| TTCCAAACACTAAGTGTACG+AGG | 0.708950 | 8_2:-12239 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTGAAAGAAAAGATTGTT+AGG | + | chr8_2:12610-12629 | Msa1226170:CDS | 20.0% |
| !! | CTTCAATGTCTTTTCAAGAA+AGG | - | chr8_2:12391-12410 | None:intergenic | 30.0% |
| CTTTCTTGAAAAGACATTGA+AGG | + | chr8_2:12389-12408 | Msa1226170:CDS | 30.0% | |
| !!! | TTCCTTGTGGATTTTGATTA+GGG | - | chr8_2:12524-12543 | None:intergenic | 30.0% |
| !!! | TTTCCTTGTGGATTTTGATT+AGG | - | chr8_2:12525-12544 | None:intergenic | 30.0% |
| ! | GTCTGTTTCTTGCAATAGTT+TGG | - | chr8_2:12277-12296 | None:intergenic | 35.0% |
| TGTTCAAGATGAACTCAAGA+AGG | + | chr8_2:12413-12432 | Msa1226170:CDS | 35.0% | |
| TGAGAAACAAGATTTCCTTG+TGG | - | chr8_2:12537-12556 | None:intergenic | 35.0% | |
| AACCTCGTACACTTAGTGTT+TGG | + | chr8_2:12237-12256 | Msa1226170:CDS | 40.0% | |
| TTCCAAACACTAAGTGTACG+AGG | - | chr8_2:12242-12261 | None:intergenic | 40.0% | |
| TCGTACACTTAGTGTTTGGA+AGG | + | chr8_2:12241-12260 | Msa1226170:CDS | 40.0% | |
| !! | CAAACAAGTCGCTGATTCTT+TGG | + | chr8_2:12308-12327 | Msa1226170:CDS | 40.0% |
| CGTTTGAGGGACAATGTTTA+TGG | + | chr8_2:12348-12367 | Msa1226170:CDS | 40.0% | |
| GACAATGTTTATGGCTGTGT+TGG | + | chr8_2:12357-12376 | Msa1226170:CDS | 40.0% | |
| CTTGAATGATCTCAGGATCA+AGG | - | chr8_2:12461-12480 | None:intergenic | 40.0% | |
| TGATCCTGAGATCATTCAAG+AGG | + | chr8_2:12461-12480 | Msa1226170:CDS | 40.0% | |
| AGAACCTCTTGAATGATCTC+AGG | - | chr8_2:12468-12487 | None:intergenic | 40.0% | |
| !!! | TGTGGATTTTGATTAGGGCT+TGG | - | chr8_2:12519-12538 | None:intergenic | 40.0% |
| AGCCCTAATCAAAATCCACA+AGG | + | chr8_2:12519-12538 | Msa1226170:CDS | 40.0% | |
| GTCAACTGATCAAAAGTTGG+TGG | - | chr8_2:12564-12583 | None:intergenic | 40.0% | |
| GTCGTCAACTGATCAAAAGT+TGG | - | chr8_2:12567-12586 | None:intergenic | 40.0% | |
| GTACGAGGTTGAAACGTTGT+GGG | - | chr8_2:12227-12246 | None:intergenic | 45.0% | |
| TGTACGAGGTTGAAACGTTG+TGG | - | chr8_2:12228-12247 | None:intergenic | 45.0% | |
| ! | ATCAGCGACTTGTTTGCGAT+GGG | - | chr8_2:12304-12323 | None:intergenic | 45.0% |
| ! | AATCAGCGACTTGTTTGCGA+TGG | - | chr8_2:12305-12324 | None:intergenic | 45.0% |
| ! | TTCTTTGGTGTACGAAGCTG+AGG | + | chr8_2:12323-12342 | Msa1226170:CDS | 45.0% |
| CTGTCCAATCCTGATCGTTT+CGG | + | chr8_2:12486-12505 | Msa1226170:CDS | 45.0% | |
| AAAGCCGAAACGATCAGGAT+TGG | - | chr8_2:12493-12512 | None:intergenic | 45.0% | |
| ! | AATAGAGTTGATCCCGGTGT+CGG | - | chr8_2:12637-12656 | None:intergenic | 45.0% |
| ! | ACCACCAATAGAGTTGATCC+CGG | - | chr8_2:12643-12662 | None:intergenic | 45.0% |
| !! | ATCAACTCTATTGGTGGTGG+TGG | + | chr8_2:12645-12664 | Msa1226170:CDS | 45.0% |
| GGTTGCCAGATTAAAGTGCA+GGG | + | chr8_2:12717-12736 | Msa1226170:CDS | 45.0% | |
| GTTGCCAGATTAAAGTGCAG+GGG | + | chr8_2:12718-12737 | Msa1226170:CDS | 45.0% | |
| TTGCCAGATTAAAGTGCAGG+GGG | + | chr8_2:12719-12738 | Msa1226170:CDS | 45.0% | |
| TGATGCTTGCATGCTGCACA+CGG | - | chr8_2:12147-12166 | None:intergenic | 50.0% | |
| CATGCAAGCATCAACGTCGA+AGG | + | chr8_2:12154-12173 | Msa1226170:CDS | 50.0% | |
| CCTAGCTCCTTACTTTCCAG+CGG | + | chr8_2:12197-12216 | Msa1226170:CDS | 50.0% | |
| AAGATTGTTAGGCCCGACAC+CGG | + | chr8_2:12621-12640 | Msa1226170:CDS | 50.0% | |
| ! | ATAGAGTTGATCCCGGTGTC+GGG | - | chr8_2:12636-12655 | None:intergenic | 50.0% |
| GACACCGGGATCAACTCTAT+TGG | + | chr8_2:12636-12655 | Msa1226170:CDS | 50.0% | |
| ACCGGGATCAACTCTATTGG+TGG | + | chr8_2:12639-12658 | Msa1226170:CDS | 50.0% | |
| GGGATCAACTCTATTGGTGG+TGG | + | chr8_2:12642-12661 | Msa1226170:CDS | 50.0% | |
| !! | TCTATTGGTGGTGGTGGAGA+GGG | + | chr8_2:12651-12670 | Msa1226170:CDS | 50.0% |
| GGTGGAGAGGGACAACATAT+TGG | + | chr8_2:12663-12682 | Msa1226170:CDS | 50.0% | |
| GGTGCTCCTTCTCTTGACAA+TGG | + | chr8_2:12684-12703 | Msa1226170:CDS | 50.0% | |
| GTGCTGCCATTGTCAAGAGA+AGG | - | chr8_2:12693-12712 | None:intergenic | 50.0% | |
| CTTGACAATGGCAGCACTAG+CGG | + | chr8_2:12696-12715 | Msa1226170:CDS | 50.0% | |
| CGGTTGCCAGATTAAAGTGC+AGG | + | chr8_2:12716-12735 | Msa1226170:CDS | 50.0% | |
| GTTCCCCCTGCACTTTAATC+TGG | - | chr8_2:12725-12744 | None:intergenic | 50.0% | |
| GATGCTTGCATGCTGCACAC+GGG | - | chr8_2:12146-12165 | None:intergenic | 55.0% | |
| CCGCTGGAAAGTAAGGAGCT+AGG | - | chr8_2:12200-12219 | None:intergenic | 55.0% | |
| GGGTTGTCCGCTGGAAAGTA+AGG | - | chr8_2:12207-12226 | None:intergenic | 55.0% | |
| ! | AAACGTTGTGGGTTGTCCGC+TGG | - | chr8_2:12216-12235 | None:intergenic | 55.0% |
| ACGAAGCTGAGGCACGTTTG+AGG | + | chr8_2:12334-12353 | Msa1226170:CDS | 55.0% | |
| CGAAGCTGAGGCACGTTTGA+GGG | + | chr8_2:12335-12354 | Msa1226170:CDS | 55.0% | |
| GGTGCAAAGCCGAAACGATC+AGG | - | chr8_2:12498-12517 | None:intergenic | 55.0% | |
| AGATTGTTAGGCCCGACACC+GGG | + | chr8_2:12622-12641 | Msa1226170:CDS | 55.0% | |
| !! | CTCTATTGGTGGTGGTGGAG+AGG | + | chr8_2:12650-12669 | Msa1226170:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 12123 | 12782 | 12123 | ID=Msa1226170;Name=Msa1226170 |
| chr8_2 | mRNA | 12123 | 12782 | 12123 | ID=Msa1226170-mRNA-1;Parent=Msa1226170;Name=Msa1226170-mRNA-1;_AED=0.10;_eAED=0.11;_QI=0|-1|0|1|-1|1|1|0|219 |
| chr8_2 | exon | 12123 | 12782 | 12123 | ID=Msa1226170-mRNA-1:exon:6;Parent=Msa1226170-mRNA-1 |
| chr8_2 | CDS | 12123 | 12782 | 12123 | ID=Msa1226170-mRNA-1:cds;Parent=Msa1226170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
