AlfalfaGEDB | Msa1226180

M. sativa cultivar zhongmu-4 / Msa1226180

KEGG: K14498
GO: GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1226180	ACJ84448.1	98.817	169	2	0	1	169	1	169	1.99e-119	352

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1226180	sp\|Q75H77\|SAPKA_ORYSJ	87.574	169	21	0	1	169	1	169	3.64e-109	318

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1226180	B7FI69	98.817	169	2	0	1	169	1	169	9.52e-120	352

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1226180	MtrunA17_Chr8g0374571	98.817	169	2	1	169	1	169	2.09e-123	352
Msa1226180	MtrunA17_Chr4g0045371	89.941	169	17	1	169	1	169	8.49e-112	322
Msa1226180	MtrunA17_Chr1g0162301	90.566	159	15	11	169	12	170	1.13e-105	307
Msa1226180	MtrunA17_Chr5g0402661	87.195	164	21	6	169	1	164	3.19e-105	305
Msa1226180	MtrunA17_Chr8g0385281	83.893	149	24	21	169	3	151	3.24e-94	277
Msa1226180	MtrunA17_Chr3g0131061	81.879	149	27	21	169	2	150	2.14e-91	270
Msa1226180	MtrunA17_Chr2g0277501	81.879	149	27	21	169	2	150	2.38e-91	270
Msa1226180	MtrunA17_Chr4g0055451	80.952	147	28	21	167	3	149	3.97e-90	266
Msa1226180	MtrunA17_Chr8g0381821	79.195	149	31	21	169	2	150	1.23e-88	263
Msa1226180	MtrunA17_Chr5g0426521	79.866	149	30	21	169	2	150	1.11e-87	260

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1226180	AT4G33950.2	89.941	169	15	2	1	169	1	167	1.18e-109	317
Msa1226180	AT5G66880.1	86.982	169	21	1	1	169	1	168	1.28e-109	317
Msa1226180	AT5G66880.2	86.982	169	21	1	1	169	1	168	1.28e-109	317
Msa1226180	AT4G33950.1	89.941	169	15	2	1	169	1	167	4.56e-109	316
Msa1226180	AT3G50500.1	84.615	169	26	0	1	169	1	169	9.61e-105	305
Msa1226180	AT3G50500.2	85.629	167	24	0	1	167	1	167	9.66e-105	305
Msa1226180	AT1G10940.1	83.893	149	24	0	21	169	2	150	9.76e-94	277
Msa1226180	AT1G60940.1	83.221	149	25	0	21	169	2	150	5.79e-93	275
Msa1226180	AT1G60940.2	83.221	149	25	0	21	169	2	150	5.79e-93	275
Msa1226180	AT1G10940.2	79.618	157	24	1	21	169	2	158	1.12e-90	269

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Find 54 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATATTTGGATGGATT+GGG	0.385680	8_2:-22692	None:intergenic
AAAGTTTAATTACCATTGCA+TGG	0.540079	8_2:-24115	None:intergenic
AAATCACATATCTTCAAACG+AGG	0.720507	8_2:-24322	None:intergenic
ACGATCTGGTTCGTGATATC+GGG	0.442697	8_2:+22927	Msa1226180:CDS
AGAGAGAAATTATTAATCAC+AGG	0.559279	8_2:+23720	Msa1226180:CDS
AGCTGCGATGACGGTCGGAC+CGG	0.476538	8_2:+22868	Msa1226180:CDS
AGGTAAGCAACTGGAAGAAG+TGG	0.564529	8_2:-22659	None:intergenic
ATATATCGAACGTGGTGATA+AGG	0.424422	8_2:+23015	Msa1226180:CDS
ATATCTTCAAACGAGGAGTT+GGG	0.476083	8_2:-24315	None:intergenic
ATGATCGGTAAATCCATACC+CGG	0.658411	8_2:-22887	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAAAAGAACGAGAAAGAAA+GGG	-	chr8_2:22820-22839	None:intergenic	30.0%
TGTATTTACGAATTGAAGTC+GGG	+	chr8_2:23460-23479	Msa1226180:intron	30.0%
GCAAATTTACAAAACTGCAA+AGG	-	chr8_2:23504-23523	None:intergenic	30.0%
ACAAAAAATACACCTAAACC+AGG	-	chr8_2:23552-23571	None:intergenic	30.0%
TAACCTTATGTTATGACTGA+TGG	+	chr8_2:23640-23659	Msa1226180:intron	30.0%
ATTACAATAGCAAGATGAGT+AGG	-	chr8_2:23875-23894	None:intergenic	30.0%
TTCACAGTCTATGAATAAAC+AGG	-	chr8_2:23996-24015	None:intergenic	30.0%
TTCTTTCAACAACTCATATC+TGG	+	chr8_2:24080-24099	Msa1226180:CDS	30.0%
TCTTTCAACAACTCATATCT+GGG	+	chr8_2:24081-24100	Msa1226180:CDS	30.0%
AAACATAAGACTAATGCATC+AGG	-	chr8_2:24226-24245	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	22649	26189	22649	ID=Msa1226180;Name=Msa1226180
chr8_2	mRNA	22649	26189	22649	ID=Msa1226180-mRNA-1;Parent=Msa1226180;Name=Msa1226180-mRNA-1;_AED=0.09;_eAED=0.09;_QI=211\|0.8\|0.66\|0.83\|1\|1\|6\|0\|177
chr8_2	exon	22649	23036	22649	ID=Msa1226180-mRNA-1:exon:0;Parent=Msa1226180-mRNA-1
chr8_2	exon	23704	23778	23704	ID=Msa1226180-mRNA-1:exon:1;Parent=Msa1226180-mRNA-1
chr8_2	exon	23860	23961	23860	ID=Msa1226180-mRNA-1:exon:2;Parent=Msa1226180-mRNA-1
chr8_2	exon	24071	24124	24071	ID=Msa1226180-mRNA-1:exon:3;Parent=Msa1226180-mRNA-1
chr8_2	exon	24265	24357	24265	ID=Msa1226180-mRNA-1:exon:4;Parent=Msa1226180-mRNA-1
chr8_2	exon	26157	26189	26157	ID=Msa1226180-mRNA-1:exon:5;Parent=Msa1226180-mRNA-1
chr8_2	five_prime_UTR	22649	22859	22649	ID=Msa1226180-mRNA-1:five_prime_utr;Parent=Msa1226180-mRNA-1
chr8_2	CDS	22860	23036	22860	ID=Msa1226180-mRNA-1:cds;Parent=Msa1226180-mRNA-1
chr8_2	CDS	23704	23778	23704	ID=Msa1226180-mRNA-1:cds;Parent=Msa1226180-mRNA-1
chr8_2	CDS	23860	23961	23860	ID=Msa1226180-mRNA-1:cds;Parent=Msa1226180-mRNA-1
chr8_2	CDS	24071	24124	24071	ID=Msa1226180-mRNA-1:cds;Parent=Msa1226180-mRNA-1
chr8_2	CDS	24265	24357	24265	ID=Msa1226180-mRNA-1:cds;Parent=Msa1226180-mRNA-1
chr8_2	CDS	26157	26189	26157	ID=Msa1226180-mRNA-1:cds;Parent=Msa1226180-mRNA-1

Gene Sequence

>Msa1226180

ATGGATCGAGCTGCGATGACGGTCGGACCGGGTATGGATTTACCGATCATGCACGACAGTGATCGGTACGATCTGGTTCGTGATATCGGGTCCGGAAATTTCGGTATTGCTAGGTTGATGCAAGATAAACAAACCAAAGAGCTTGTTGCTGTTAAATATATCGAACGTGGTGATAAGATTGATGAAAATGTGAAGAGAGAAATTATTAATCACAGGTCTCTGAGACATCCTAACATTGTTAGGTTCAAGGAGGTCATTTTAACACCTACTCATCTTGCTATTGTAATGGAGTATGCATCTGGAGGAGAACTTTTTGAGCGAATCAGTAATGCTGGCCATTTTTCTGAGGACGAGGCTCGTTTCTTCTTTCAACAACTCATATCTGGGGTCAGCTACTGCCATGCAATGCAAGTATGTCACCGGGACCTGAAGTTGGAAAATACTTTGTTGGATGGAAGCCCAACTCCTCGTTTGAAGATATGTGATTTTGGTTACTCCAAGGATAATAACATAAAAGCAATTATTTTAAACTAA

Protein sequence

>Msa1226180

MDRAAMTVGPGMDLPIMHDSDRYDLVRDIGSGNFGIARLMQDKQTKELVAVKYIERGDKIDENVKREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERISNAGHFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPTPRLKICDFGYSKDNNIKAIILN*