Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1227210 | XP_003589351.1 | 89.262 | 298 | 7 | 2 | 1 | 298 | 1 | 273 | 0.0 | 540 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1227210 | sp|Q9LQZ7|BBX21_ARATH | 42.151 | 344 | 140 | 12 | 1 | 298 | 1 | 331 | 9.35e-69 | 219 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa1227210 | TF | DBB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1227210 | MtrunA17_Chr1g0155811 | 89.262 | 298 | 7 | 2 | 1 | 298 | 1 | 273 | 0.0 | 540 |
| Msa1227210 | MtrunA17_Chr3g0142221 | 44.251 | 287 | 92 | 8 | 1 | 286 | 1 | 220 | 9.87e-66 | 205 |
| Msa1227210 | MtrunA17_Chr4g0035651 | 50.820 | 183 | 83 | 2 | 1 | 178 | 1 | 181 | 6.91e-60 | 190 |
| Msa1227210 | MtrunA17_Chr3g0145061 | 49.485 | 194 | 87 | 3 | 1 | 183 | 1 | 194 | 3.03e-58 | 186 |
| Msa1227210 | MtrunA17_Chr2g0329511 | 42.197 | 173 | 79 | 3 | 1 | 173 | 1 | 152 | 7.44e-38 | 134 |
| Msa1227210 | MtrunA17_Chr2g0314671 | 40.206 | 194 | 90 | 5 | 1 | 171 | 1 | 191 | 2.69e-37 | 134 |
| Msa1227210 | MtrunA17_Chr4g0033641 | 34.247 | 292 | 134 | 9 | 1 | 286 | 1 | 240 | 4.81e-37 | 132 |
| Msa1227210 | MtrunA17_Chr5g0405151 | 35.673 | 171 | 96 | 5 | 1 | 161 | 1 | 167 | 5.23e-24 | 96.3 |
| Msa1227210 | MtrunA17_Chr1g0150471 | 46.392 | 97 | 42 | 1 | 5 | 101 | 6 | 92 | 3.21e-23 | 97.1 |
| Msa1227210 | MtrunA17_Chr4g0072871 | 45.161 | 93 | 41 | 1 | 5 | 97 | 22 | 104 | 1.58e-20 | 90.5 |
| Msa1227210 | MtrunA17_Chr3g0136701 | 41.818 | 110 | 54 | 1 | 5 | 114 | 6 | 105 | 8.01e-19 | 84.7 |
| Msa1227210 | MtrunA17_Chr7g0220721 | 41.935 | 93 | 44 | 1 | 5 | 97 | 26 | 108 | 4.93e-18 | 83.6 |
| Msa1227210 | MtrunA17_Chr7g0268691 | 35.714 | 98 | 52 | 2 | 5 | 102 | 20 | 106 | 2.28e-13 | 69.7 |
| Msa1227210 | MtrunA17_Chr5g0429341 | 32.990 | 97 | 55 | 1 | 1 | 97 | 1 | 87 | 5.12e-13 | 68.9 |
| Msa1227210 | MtrunA17_Chr3g0120711 | 34.021 | 97 | 53 | 2 | 1 | 97 | 1 | 86 | 2.15e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1227210 | AT1G75540.1 | 42.151 | 344 | 140 | 12 | 1 | 298 | 1 | 331 | 9.51e-70 | 219 |
| Msa1227210 | AT4G39070.1 | 47.783 | 203 | 79 | 2 | 1 | 176 | 1 | 203 | 4.79e-52 | 171 |
| Msa1227210 | AT1G06040.2 | 41.379 | 203 | 80 | 5 | 1 | 194 | 1 | 173 | 3.21e-40 | 139 |
| Msa1227210 | AT1G06040.1 | 35.254 | 295 | 135 | 9 | 1 | 286 | 1 | 248 | 1.29e-39 | 139 |
| Msa1227210 | AT2G31380.1 | 41.808 | 177 | 80 | 4 | 1 | 177 | 1 | 154 | 1.18e-36 | 131 |
| Msa1227210 | AT1G78600.1 | 38.889 | 198 | 114 | 5 | 1 | 197 | 1 | 192 | 1.38e-36 | 132 |
| Msa1227210 | AT1G78600.2 | 38.889 | 198 | 114 | 5 | 1 | 197 | 1 | 192 | 1.88e-36 | 133 |
| Msa1227210 | AT4G10240.1 | 43.125 | 160 | 78 | 3 | 1 | 155 | 1 | 152 | 3.55e-36 | 127 |
| Msa1227210 | AT2G24790.1 | 43.750 | 112 | 53 | 1 | 5 | 116 | 8 | 109 | 5.96e-23 | 96.3 |
| Msa1227210 | AT4G38960.1 | 46.667 | 105 | 52 | 2 | 1 | 105 | 1 | 101 | 6.30e-23 | 93.6 |
| Msa1227210 | AT4G38960.6 | 46.667 | 105 | 52 | 2 | 1 | 105 | 1 | 101 | 6.30e-23 | 93.6 |
| Msa1227210 | AT2G24790.2 | 43.750 | 112 | 53 | 1 | 5 | 116 | 8 | 109 | 7.11e-23 | 94.7 |
| Msa1227210 | AT2G21320.1 | 46.667 | 105 | 52 | 2 | 1 | 105 | 1 | 101 | 3.57e-22 | 91.3 |
| Msa1227210 | AT5G24930.1 | 43.299 | 97 | 45 | 1 | 5 | 101 | 6 | 92 | 1.51e-20 | 90.9 |
| Msa1227210 | AT5G15840.1 | 34.459 | 148 | 74 | 3 | 5 | 152 | 20 | 144 | 2.52e-18 | 84.7 |
| Msa1227210 | AT5G15840.2 | 34.459 | 148 | 74 | 3 | 5 | 152 | 20 | 144 | 5.05e-18 | 82.4 |
| Msa1227210 | AT3G02380.1 | 41.935 | 93 | 44 | 1 | 5 | 97 | 16 | 98 | 7.41e-18 | 83.2 |
| Msa1227210 | AT5G15850.1 | 41.935 | 93 | 44 | 1 | 5 | 97 | 12 | 94 | 2.05e-17 | 82.0 |
| Msa1227210 | AT5G57660.1 | 34.351 | 131 | 67 | 3 | 5 | 130 | 22 | 138 | 1.92e-15 | 76.3 |
| Msa1227210 | AT1G28050.1 | 36.634 | 101 | 54 | 1 | 2 | 102 | 6 | 96 | 7.38e-14 | 72.0 |
| Msa1227210 | AT2G33500.2 | 35.000 | 100 | 55 | 1 | 3 | 102 | 10 | 99 | 2.65e-13 | 70.1 |
| Msa1227210 | AT2G33500.1 | 35.000 | 100 | 55 | 1 | 3 | 102 | 10 | 99 | 2.73e-13 | 70.1 |
| Msa1227210 | AT2G47890.3 | 37.647 | 85 | 43 | 1 | 5 | 89 | 13 | 87 | 2.73e-12 | 66.6 |
| Msa1227210 | AT2G47890.2 | 37.647 | 85 | 43 | 1 | 5 | 89 | 13 | 87 | 3.25e-12 | 65.5 |
| Msa1227210 | AT2G47890.1 | 37.647 | 85 | 43 | 1 | 5 | 89 | 13 | 87 | 3.41e-12 | 66.6 |
| Msa1227210 | AT3G07650.3 | 34.884 | 86 | 46 | 1 | 1 | 86 | 1 | 76 | 2.12e-11 | 64.3 |
| Msa1227210 | AT3G07650.2 | 34.884 | 86 | 46 | 1 | 1 | 86 | 1 | 76 | 2.12e-11 | 64.3 |
| Msa1227210 | AT3G07650.4 | 34.884 | 86 | 46 | 1 | 1 | 86 | 1 | 76 | 2.12e-11 | 64.3 |
| Msa1227210 | AT3G07650.1 | 34.884 | 86 | 46 | 1 | 1 | 86 | 1 | 76 | 2.12e-11 | 64.3 |
| Msa1227210 | AT5G48250.1 | 31.013 | 158 | 85 | 5 | 1 | 157 | 1 | 135 | 2.73e-11 | 63.9 |
Find 62 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGATCCCCATATTATTAT+TGG | 0.137675 | 8_2:-2310037 | None:intergenic |
| ATTCTTTCCCAATAATAATA+TGG | 0.175250 | 8_2:+2310029 | Msa1227210:CDS |
| ACCGCTCTGTAGATTATTTA+TGG | 0.192102 | 8_2:-2309866 | None:intergenic |
| ATATCTTGTTCTCTTGGAAT+TGG | 0.322098 | 8_2:-2310229 | None:intergenic |
| TTCTTTCCCAATAATAATAT+GGG | 0.326545 | 8_2:+2310030 | Msa1227210:CDS |
| GAGGGTGTTGTTTAGGAGTT+GGG | 0.330083 | 8_2:-2309164 | None:intergenic |
| CAGATCCCCATATTATTATT+GGG | 0.334863 | 8_2:-2310036 | None:intergenic |
| AGAGGGTGTTGTTTAGGAGT+TGG | 0.337165 | 8_2:-2309165 | None:intergenic |
| CCAATAATAATATGGGGATC+TGG | 0.340677 | 8_2:+2310037 | Msa1227210:CDS |
| TCGCAGAGAGGGTGTTGTTT+AGG | 0.344263 | 8_2:-2309171 | None:intergenic |
| CCATAGATATCTTGTTCTCT+TGG | 0.347739 | 8_2:-2310235 | None:intergenic |
| TACTCCTTCACCAACATCTA+TGG | 0.351518 | 8_2:+2309562 | Msa1227210:CDS |
| CCAAGAGAACAAGATATCTA+TGG | 0.390568 | 8_2:+2310235 | Msa1227210:CDS |
| AAGAGCGAGACGGTGGTGTT+TGG | 0.393267 | 8_2:-2309136 | None:intergenic |
| GTTCTCTTGGAATTGGCAAC+AGG | 0.403208 | 8_2:-2310222 | None:intergenic |
| TTCATCTTCACAAATAATGA+TGG | 0.443338 | 8_2:+2310089 | Msa1227210:CDS |
| CCCTCTCTGCGATATTTGTC+AGG | 0.457199 | 8_2:+2309182 | Msa1227210:CDS |
| TGTTCCATTTGCTTTCTCCA+AGG | 0.462477 | 8_2:+2309673 | Msa1227210:CDS |
| AAATCATCAACTTGCCAGCC+AGG | 0.463520 | 8_2:-2309635 | None:intergenic |
| CAATAATAATATGGGGATCT+GGG | 0.478272 | 8_2:+2310038 | Msa1227210:CDS |
| CAGAGTGAGACAACAAAGAA+AGG | 0.485986 | 8_2:+2310114 | Msa1227210:CDS |
| AAAACCTTGGAGAAAGCAAA+TGG | 0.494818 | 8_2:-2309677 | None:intergenic |
| CATGATAGGTTTCTTCTCAC+TGG | 0.500831 | 8_2:+2309428 | Msa1227210:CDS |
| CTTCCTTCTTCCATAGATGT+TGG | 0.505484 | 8_2:-2309572 | None:intergenic |
| GTGTTTGGAAGCGAGTTTGT+TGG | 0.511969 | 8_2:-2309121 | None:intergenic |
| TCATCTTCACAAATAATGAT+GGG | 0.520250 | 8_2:+2310090 | Msa1227210:CDS |
| GGTGATGAATTGTTTAATGC+TGG | 0.521388 | 8_2:+2309985 | Msa1227210:CDS |
| AAAGCAGCATCAACAAATCA+AGG | 0.524782 | 8_2:+2310151 | Msa1227210:CDS |
| GCATCAACAAATCAAGGTTG+AGG | 0.537392 | 8_2:+2310157 | Msa1227210:CDS |
| CATCAACAAATCAAGGTTGA+GGG | 0.537425 | 8_2:+2310158 | Msa1227210:CDS |
| GATACATAAGGCGGCTTCGT+CGG | 0.542061 | 8_2:-2309073 | None:intergenic |
| AGAGAAGGTGGTGGTGCTTG+AGG | 0.542822 | 8_2:-2310063 | None:intergenic |
| GTGGTCACAGTCGATACATA+AGG | 0.545496 | 8_2:-2309085 | None:intergenic |
| TCACCAACATCTATGGAAGA+AGG | 0.545672 | 8_2:+2309569 | Msa1227210:CDS |
| TACTTGATTGAGACTCTACC+TGG | 0.547419 | 8_2:+2309617 | Msa1227210:CDS |
| GTTTGTTGGCGTGGTGGACA+CGG | 0.549454 | 8_2:-2309107 | None:intergenic |
| AGAGTGAGACAACAAAGAAA+GGG | 0.571772 | 8_2:+2310115 | Msa1227210:CDS |
| GACTTGATAGTTGCTGAAGA+AGG | 0.578340 | 8_2:-2309500 | None:intergenic |
| ACATAAGGCGGCTTCGTCGG+CGG | 0.586855 | 8_2:-2309070 | None:intergenic |
| TGATTGAGACTCTACCTGGC+TGG | 0.592673 | 8_2:+2309621 | Msa1227210:CDS |
| ACATCTATGGAAGAAGGAAG+TGG | 0.599359 | 8_2:+2309575 | Msa1227210:CDS |
| TGTGAAGATGAATATAGAGA+AGG | 0.600444 | 8_2:-2310078 | None:intergenic |
| GAAGATGAATATAGAGAAGG+TGG | 0.603622 | 8_2:-2310075 | None:intergenic |
| TCTTCCATAGATGTTGGTGA+AGG | 0.607403 | 8_2:-2309566 | None:intergenic |
| TAGATTATTTATGGCGACCG+AGG | 0.610360 | 8_2:-2309857 | None:intergenic |
| TGGAAGCGAGTTTGTTGGCG+TGG | 0.613525 | 8_2:-2309116 | None:intergenic |
| CCTGACAAATATCGCAGAGA+GGG | 0.617757 | 8_2:-2309182 | None:intergenic |
| TCTTTCCCAATAATAATATG+GGG | 0.620377 | 8_2:+2310031 | Msa1227210:CDS |
| AAATTCAGCTGATACAGCCT+CGG | 0.622051 | 8_2:+2309840 | Msa1227210:CDS |
| ACATGCAGCTGATACAGCCT+CGG | 0.629634 | 8_2:-2309889 | None:intergenic |
| AAGCGAGTTTGTTGGCGTGG+TGG | 0.633769 | 8_2:-2309113 | None:intergenic |
| CATCTTCACAAATAATGATG+GGG | 0.650089 | 8_2:+2310091 | Msa1227210:CDS |
| GATGAATATAGAGAAGGTGG+TGG | 0.651333 | 8_2:-2310072 | None:intergenic |
| ATAATCTACAGAGCGGTCCG+AGG | 0.653783 | 8_2:+2309872 | Msa1227210:CDS |
| TCTATGGAAGAAGGAAGTGG+TGG | 0.656402 | 8_2:+2309578 | Msa1227210:CDS |
| TTGGCAACAGGACTAATCTG+TGG | 0.670590 | 8_2:-2310210 | None:intergenic |
| TTGGGTTATGAAGAGCGAGA+CGG | 0.678930 | 8_2:-2309146 | None:intergenic |
| GGTTATGAAGAGCGAGACGG+TGG | 0.682697 | 8_2:-2309143 | None:intergenic |
| ACCTGACAAATATCGCAGAG+AGG | 0.707817 | 8_2:-2309183 | None:intergenic |
| GTCACAGTCGATACATAAGG+CGG | 0.712524 | 8_2:-2309082 | None:intergenic |
| GCCATAAATAATCTACAGAG+CGG | 0.723208 | 8_2:+2309865 | Msa1227210:CDS |
| TGTTGGCGTGGTGGACACGG+TGG | 0.723732 | 8_2:-2309104 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGTTTAAATATCATTGAT+TGG | + | chr8_2:2309927-2309946 | Msa1227210:intron | 15.0% |
| !! | TAAGTTTAAATATCATTGAT+TGG | + | chr8_2:2309927-2309946 | Msa1227210:intron | 15.0% |
| !! | ATTCTTTCCCAATAATAATA+TGG | + | chr8_2:2310029-2310048 | Msa1227210:CDS | 20.0% |
| !! | TTCTTTCCCAATAATAATAT+GGG | + | chr8_2:2310030-2310049 | Msa1227210:CDS | 20.0% |
| !! | ATTCTTTCCCAATAATAATA+TGG | + | chr8_2:2310029-2310048 | Msa1227210:CDS | 20.0% |
| !! | TTCTTTCCCAATAATAATAT+GGG | + | chr8_2:2310030-2310049 | Msa1227210:CDS | 20.0% |
| ! | ACAAAATATGAGAGAAAGTT+AGG | - | chr8_2:2309227-2309246 | None:intergenic | 25.0% |
| ! | AACTTACACAAAAACATGAT+AGG | + | chr8_2:2309414-2309433 | Msa1227210:CDS | 25.0% |
| !! | TTTTCAATCAAAGAAGAAGA+AGG | - | chr8_2:2309536-2309555 | None:intergenic | 25.0% |
| ! | ATTAATATTGAGTAAGAGAG+AGG | - | chr8_2:2309714-2309733 | None:intergenic | 25.0% |
| ! | TCTTTCCCAATAATAATATG+GGG | + | chr8_2:2310031-2310050 | Msa1227210:CDS | 25.0% |
| ! | TTCATCTTCACAAATAATGA+TGG | + | chr8_2:2310089-2310108 | Msa1227210:CDS | 25.0% |
| ! | TCATCTTCACAAATAATGAT+GGG | + | chr8_2:2310090-2310109 | Msa1227210:CDS | 25.0% |
| ! | ACAAAATATGAGAGAAAGTT+AGG | - | chr8_2:2309227-2309246 | None:intergenic | 25.0% |
| ! | AACTTACACAAAAACATGAT+AGG | + | chr8_2:2309414-2309433 | Msa1227210:CDS | 25.0% |
| !! | TTTTCAATCAAAGAAGAAGA+AGG | - | chr8_2:2309536-2309555 | None:intergenic | 25.0% |
| ! | ATTAATATTGAGTAAGAGAG+AGG | - | chr8_2:2309714-2309733 | None:intergenic | 25.0% |
| ! | TCTTTCCCAATAATAATATG+GGG | + | chr8_2:2310031-2310050 | Msa1227210:CDS | 25.0% |
| ! | TTCATCTTCACAAATAATGA+TGG | + | chr8_2:2310089-2310108 | Msa1227210:CDS | 25.0% |
| ! | TCATCTTCACAAATAATGAT+GGG | + | chr8_2:2310090-2310109 | Msa1227210:CDS | 25.0% |
| !!! | ATGTTGACTTTTTTTCCATG+CGG | + | chr8_2:2309306-2309325 | Msa1227210:intron | 30.0% |
| !! | TTGATTGGTTTGTTTGTGAT+TGG | + | chr8_2:2309942-2309961 | Msa1227210:intron | 30.0% |
| CAGATCCCCATATTATTATT+GGG | - | chr8_2:2310039-2310058 | None:intergenic | 30.0% | |
| CAATAATAATATGGGGATCT+GGG | + | chr8_2:2310038-2310057 | Msa1227210:CDS | 30.0% | |
| TGTGAAGATGAATATAGAGA+AGG | - | chr8_2:2310081-2310100 | None:intergenic | 30.0% | |
| CATCTTCACAAATAATGATG+GGG | + | chr8_2:2310091-2310110 | Msa1227210:CDS | 30.0% | |
| ATATCTTGTTCTCTTGGAAT+TGG | - | chr8_2:2310232-2310251 | None:intergenic | 30.0% | |
| !!! | ATGTTGACTTTTTTTCCATG+CGG | + | chr8_2:2309306-2309325 | Msa1227210:intron | 30.0% |
| !! | TTGATTGGTTTGTTTGTGAT+TGG | + | chr8_2:2309942-2309961 | Msa1227210:intron | 30.0% |
| CAGATCCCCATATTATTATT+GGG | - | chr8_2:2310039-2310058 | None:intergenic | 30.0% | |
| CAATAATAATATGGGGATCT+GGG | + | chr8_2:2310038-2310057 | Msa1227210:CDS | 30.0% | |
| TGTGAAGATGAATATAGAGA+AGG | - | chr8_2:2310081-2310100 | None:intergenic | 30.0% | |
| CATCTTCACAAATAATGATG+GGG | + | chr8_2:2310091-2310110 | Msa1227210:CDS | 30.0% | |
| ATATCTTGTTCTCTTGGAAT+TGG | - | chr8_2:2310232-2310251 | None:intergenic | 30.0% | |
| TGACGTATGCAACAAAAATG+AGG | + | chr8_2:2309032-2309051 | Msa1227210:CDS | 35.0% | |
| AAAACCTTGGAGAAAGCAAA+TGG | - | chr8_2:2309680-2309699 | None:intergenic | 35.0% | |
| GGTAGAAAATAGGAAAACCT+TGG | - | chr8_2:2309693-2309712 | None:intergenic | 35.0% | |
| GTAAGAGAGAGGTAGAAAAT+AGG | - | chr8_2:2309703-2309722 | None:intergenic | 35.0% | |
| GCCATAAATAATCTACAGAG+CGG | + | chr8_2:2309865-2309884 | Msa1227210:CDS | 35.0% | |
| ACCGCTCTGTAGATTATTTA+TGG | - | chr8_2:2309869-2309888 | None:intergenic | 35.0% | |
| GATCTAGTGTATGAAATGCA+GGG | + | chr8_2:2309964-2309983 | Msa1227210:intron | 35.0% | |
| GGTGATGAATTGTTTAATGC+TGG | + | chr8_2:2309985-2310004 | Msa1227210:CDS | 35.0% | |
| CCAGATCCCCATATTATTAT+TGG | - | chr8_2:2310040-2310059 | None:intergenic | 35.0% | |
| CCAATAATAATATGGGGATC+TGG | + | chr8_2:2310037-2310056 | Msa1227210:CDS | 35.0% | |
| GAAGATGAATATAGAGAAGG+TGG | - | chr8_2:2310078-2310097 | None:intergenic | 35.0% | |
| AGAGTGAGACAACAAAGAAA+GGG | + | chr8_2:2310115-2310134 | Msa1227210:CDS | 35.0% | |
| AAAGCAGCATCAACAAATCA+AGG | + | chr8_2:2310151-2310170 | Msa1227210:CDS | 35.0% | |
| CATCAACAAATCAAGGTTGA+GGG | + | chr8_2:2310158-2310177 | Msa1227210:CDS | 35.0% | |
| CCATAGATATCTTGTTCTCT+TGG | - | chr8_2:2310238-2310257 | None:intergenic | 35.0% | |
| CCAAGAGAACAAGATATCTA+TGG | + | chr8_2:2310235-2310254 | Msa1227210:CDS | 35.0% | |
| TGACGTATGCAACAAAAATG+AGG | + | chr8_2:2309032-2309051 | Msa1227210:CDS | 35.0% | |
| AAAACCTTGGAGAAAGCAAA+TGG | - | chr8_2:2309680-2309699 | None:intergenic | 35.0% | |
| GGTAGAAAATAGGAAAACCT+TGG | - | chr8_2:2309693-2309712 | None:intergenic | 35.0% | |
| GTAAGAGAGAGGTAGAAAAT+AGG | - | chr8_2:2309703-2309722 | None:intergenic | 35.0% | |
| GCCATAAATAATCTACAGAG+CGG | + | chr8_2:2309865-2309884 | Msa1227210:CDS | 35.0% | |
| ACCGCTCTGTAGATTATTTA+TGG | - | chr8_2:2309869-2309888 | None:intergenic | 35.0% | |
| GATCTAGTGTATGAAATGCA+GGG | + | chr8_2:2309964-2309983 | Msa1227210:intron | 35.0% | |
| GGTGATGAATTGTTTAATGC+TGG | + | chr8_2:2309985-2310004 | Msa1227210:CDS | 35.0% | |
| CCAGATCCCCATATTATTAT+TGG | - | chr8_2:2310040-2310059 | None:intergenic | 35.0% | |
| CCAATAATAATATGGGGATC+TGG | + | chr8_2:2310037-2310056 | Msa1227210:CDS | 35.0% | |
| GAAGATGAATATAGAGAAGG+TGG | - | chr8_2:2310078-2310097 | None:intergenic | 35.0% | |
| AGAGTGAGACAACAAAGAAA+GGG | + | chr8_2:2310115-2310134 | Msa1227210:CDS | 35.0% | |
| AAAGCAGCATCAACAAATCA+AGG | + | chr8_2:2310151-2310170 | Msa1227210:CDS | 35.0% | |
| CATCAACAAATCAAGGTTGA+GGG | + | chr8_2:2310158-2310177 | Msa1227210:CDS | 35.0% | |
| CCATAGATATCTTGTTCTCT+TGG | - | chr8_2:2310238-2310257 | None:intergenic | 35.0% | |
| CCAAGAGAACAAGATATCTA+TGG | + | chr8_2:2310235-2310254 | Msa1227210:CDS | 35.0% | |
| ! | TTTTGTTGCATACGTCACAC+TGG | - | chr8_2:2309029-2309048 | None:intergenic | 40.0% |
| !!! | TGACTTTTTTTCCATGCGGT+AGG | + | chr8_2:2309310-2309329 | Msa1227210:intron | 40.0% |
| CATGATAGGTTTCTTCTCAC+TGG | + | chr8_2:2309428-2309447 | Msa1227210:CDS | 40.0% | |
| ! | GACTTGATAGTTGCTGAAGA+AGG | - | chr8_2:2309503-2309522 | None:intergenic | 40.0% |
| TACTCCTTCACCAACATCTA+TGG | + | chr8_2:2309562-2309581 | Msa1227210:CDS | 40.0% | |
| ! | TCTTCCATAGATGTTGGTGA+AGG | - | chr8_2:2309569-2309588 | None:intergenic | 40.0% |
| TCACCAACATCTATGGAAGA+AGG | + | chr8_2:2309569-2309588 | Msa1227210:CDS | 40.0% | |
| CTTCCTTCTTCCATAGATGT+TGG | - | chr8_2:2309575-2309594 | None:intergenic | 40.0% | |
| ACATCTATGGAAGAAGGAAG+TGG | + | chr8_2:2309575-2309594 | Msa1227210:CDS | 40.0% | |
| TACTTGATTGAGACTCTACC+TGG | + | chr8_2:2309617-2309636 | Msa1227210:CDS | 40.0% | |
| TGTTCCATTTGCTTTCTCCA+AGG | + | chr8_2:2309673-2309692 | Msa1227210:CDS | 40.0% | |
| AAATTCAGCTGATACAGCCT+CGG | + | chr8_2:2309840-2309859 | Msa1227210:CDS | 40.0% | |
| TAGATTATTTATGGCGACCG+AGG | - | chr8_2:2309860-2309879 | None:intergenic | 40.0% | |
| GGATCTAGTGTATGAAATGC+AGG | + | chr8_2:2309963-2309982 | Msa1227210:intron | 40.0% | |
| GATGAATATAGAGAAGGTGG+TGG | - | chr8_2:2310075-2310094 | None:intergenic | 40.0% | |
| CAGAGTGAGACAACAAAGAA+AGG | + | chr8_2:2310114-2310133 | Msa1227210:CDS | 40.0% | |
| GCATCAACAAATCAAGGTTG+AGG | + | chr8_2:2310157-2310176 | Msa1227210:CDS | 40.0% | |
| ! | TTTTGTTGCATACGTCACAC+TGG | - | chr8_2:2309029-2309048 | None:intergenic | 40.0% |
| !!! | TGACTTTTTTTCCATGCGGT+AGG | + | chr8_2:2309310-2309329 | Msa1227210:intron | 40.0% |
| CATGATAGGTTTCTTCTCAC+TGG | + | chr8_2:2309428-2309447 | Msa1227210:CDS | 40.0% | |
| ! | GACTTGATAGTTGCTGAAGA+AGG | - | chr8_2:2309503-2309522 | None:intergenic | 40.0% |
| TACTCCTTCACCAACATCTA+TGG | + | chr8_2:2309562-2309581 | Msa1227210:CDS | 40.0% | |
| ! | TCTTCCATAGATGTTGGTGA+AGG | - | chr8_2:2309569-2309588 | None:intergenic | 40.0% |
| TCACCAACATCTATGGAAGA+AGG | + | chr8_2:2309569-2309588 | Msa1227210:CDS | 40.0% | |
| CTTCCTTCTTCCATAGATGT+TGG | - | chr8_2:2309575-2309594 | None:intergenic | 40.0% | |
| ACATCTATGGAAGAAGGAAG+TGG | + | chr8_2:2309575-2309594 | Msa1227210:CDS | 40.0% | |
| TACTTGATTGAGACTCTACC+TGG | + | chr8_2:2309617-2309636 | Msa1227210:CDS | 40.0% | |
| TGTTCCATTTGCTTTCTCCA+AGG | + | chr8_2:2309673-2309692 | Msa1227210:CDS | 40.0% | |
| AAATTCAGCTGATACAGCCT+CGG | + | chr8_2:2309840-2309859 | Msa1227210:CDS | 40.0% | |
| TAGATTATTTATGGCGACCG+AGG | - | chr8_2:2309860-2309879 | None:intergenic | 40.0% | |
| GGATCTAGTGTATGAAATGC+AGG | + | chr8_2:2309963-2309982 | Msa1227210:intron | 40.0% | |
| GATGAATATAGAGAAGGTGG+TGG | - | chr8_2:2310075-2310094 | None:intergenic | 40.0% | |
| CAGAGTGAGACAACAAAGAA+AGG | + | chr8_2:2310114-2310133 | Msa1227210:CDS | 40.0% | |
| GCATCAACAAATCAAGGTTG+AGG | + | chr8_2:2310157-2310176 | Msa1227210:CDS | 40.0% | |
| GTCACAGTCGATACATAAGG+CGG | - | chr8_2:2309085-2309104 | None:intergenic | 45.0% | |
| GTGGTCACAGTCGATACATA+AGG | - | chr8_2:2309088-2309107 | None:intergenic | 45.0% | |
| GTGTTTGGAAGCGAGTTTGT+TGG | - | chr8_2:2309124-2309143 | None:intergenic | 45.0% | |
| TTGGGTTATGAAGAGCGAGA+CGG | - | chr8_2:2309149-2309168 | None:intergenic | 45.0% | |
| !! | GAGGGTGTTGTTTAGGAGTT+GGG | - | chr8_2:2309167-2309186 | None:intergenic | 45.0% |
| !! | AGAGGGTGTTGTTTAGGAGT+TGG | - | chr8_2:2309168-2309187 | None:intergenic | 45.0% |
| CCTGACAAATATCGCAGAGA+GGG | - | chr8_2:2309185-2309204 | None:intergenic | 45.0% | |
| ACCTGACAAATATCGCAGAG+AGG | - | chr8_2:2309186-2309205 | None:intergenic | 45.0% | |
| TCTATGGAAGAAGGAAGTGG+TGG | + | chr8_2:2309578-2309597 | Msa1227210:CDS | 45.0% | |
| AAATCATCAACTTGCCAGCC+AGG | - | chr8_2:2309638-2309657 | None:intergenic | 45.0% | |
| TTGGCAACAGGACTAATCTG+TGG | - | chr8_2:2310213-2310232 | None:intergenic | 45.0% | |
| GTTCTCTTGGAATTGGCAAC+AGG | - | chr8_2:2310225-2310244 | None:intergenic | 45.0% | |
| GTCACAGTCGATACATAAGG+CGG | - | chr8_2:2309085-2309104 | None:intergenic | 45.0% | |
| GTGGTCACAGTCGATACATA+AGG | - | chr8_2:2309088-2309107 | None:intergenic | 45.0% | |
| GTGTTTGGAAGCGAGTTTGT+TGG | - | chr8_2:2309124-2309143 | None:intergenic | 45.0% | |
| TTGGGTTATGAAGAGCGAGA+CGG | - | chr8_2:2309149-2309168 | None:intergenic | 45.0% | |
| !! | GAGGGTGTTGTTTAGGAGTT+GGG | - | chr8_2:2309167-2309186 | None:intergenic | 45.0% |
| !! | AGAGGGTGTTGTTTAGGAGT+TGG | - | chr8_2:2309168-2309187 | None:intergenic | 45.0% |
| CCTGACAAATATCGCAGAGA+GGG | - | chr8_2:2309185-2309204 | None:intergenic | 45.0% | |
| ACCTGACAAATATCGCAGAG+AGG | - | chr8_2:2309186-2309205 | None:intergenic | 45.0% | |
| TCTATGGAAGAAGGAAGTGG+TGG | + | chr8_2:2309578-2309597 | Msa1227210:CDS | 45.0% | |
| AAATCATCAACTTGCCAGCC+AGG | - | chr8_2:2309638-2309657 | None:intergenic | 45.0% | |
| TTGGCAACAGGACTAATCTG+TGG | - | chr8_2:2310213-2310232 | None:intergenic | 45.0% | |
| GTTCTCTTGGAATTGGCAAC+AGG | - | chr8_2:2310225-2310244 | None:intergenic | 45.0% | |
| GATACATAAGGCGGCTTCGT+CGG | - | chr8_2:2309076-2309095 | None:intergenic | 50.0% | |
| !! | TCGCAGAGAGGGTGTTGTTT+AGG | - | chr8_2:2309174-2309193 | None:intergenic | 50.0% |
| CCCTCTCTGCGATATTTGTC+AGG | + | chr8_2:2309182-2309201 | Msa1227210:CDS | 50.0% | |
| TGATTGAGACTCTACCTGGC+TGG | + | chr8_2:2309621-2309640 | Msa1227210:CDS | 50.0% | |
| ATAATCTACAGAGCGGTCCG+AGG | + | chr8_2:2309872-2309891 | Msa1227210:CDS | 50.0% | |
| ACATGCAGCTGATACAGCCT+CGG | - | chr8_2:2309892-2309911 | None:intergenic | 50.0% | |
| GATACATAAGGCGGCTTCGT+CGG | - | chr8_2:2309076-2309095 | None:intergenic | 50.0% | |
| !! | TCGCAGAGAGGGTGTTGTTT+AGG | - | chr8_2:2309174-2309193 | None:intergenic | 50.0% |
| CCCTCTCTGCGATATTTGTC+AGG | + | chr8_2:2309182-2309201 | Msa1227210:CDS | 50.0% | |
| TGATTGAGACTCTACCTGGC+TGG | + | chr8_2:2309621-2309640 | Msa1227210:CDS | 50.0% | |
| ATAATCTACAGAGCGGTCCG+AGG | + | chr8_2:2309872-2309891 | Msa1227210:CDS | 50.0% | |
| ACATGCAGCTGATACAGCCT+CGG | - | chr8_2:2309892-2309911 | None:intergenic | 50.0% | |
| !! | GTTTGTTGGCGTGGTGGACA+CGG | - | chr8_2:2309110-2309129 | None:intergenic | 55.0% |
| !! | AAGCGAGTTTGTTGGCGTGG+TGG | - | chr8_2:2309116-2309135 | None:intergenic | 55.0% |
| !! | TGGAAGCGAGTTTGTTGGCG+TGG | - | chr8_2:2309119-2309138 | None:intergenic | 55.0% |
| AAGAGCGAGACGGTGGTGTT+TGG | - | chr8_2:2309139-2309158 | None:intergenic | 55.0% | |
| GGTTATGAAGAGCGAGACGG+TGG | - | chr8_2:2309146-2309165 | None:intergenic | 55.0% | |
| AGCTCTTCTCTCCTACCGCA+TGG | - | chr8_2:2309324-2309343 | None:intergenic | 55.0% | |
| ! | AGAGAAGGTGGTGGTGCTTG+AGG | - | chr8_2:2310066-2310085 | None:intergenic | 55.0% |
| !! | GTTTGTTGGCGTGGTGGACA+CGG | - | chr8_2:2309110-2309129 | None:intergenic | 55.0% |
| !! | AAGCGAGTTTGTTGGCGTGG+TGG | - | chr8_2:2309116-2309135 | None:intergenic | 55.0% |
| !! | TGGAAGCGAGTTTGTTGGCG+TGG | - | chr8_2:2309119-2309138 | None:intergenic | 55.0% |
| AAGAGCGAGACGGTGGTGTT+TGG | - | chr8_2:2309139-2309158 | None:intergenic | 55.0% | |
| GGTTATGAAGAGCGAGACGG+TGG | - | chr8_2:2309146-2309165 | None:intergenic | 55.0% | |
| AGCTCTTCTCTCCTACCGCA+TGG | - | chr8_2:2309324-2309343 | None:intergenic | 55.0% | |
| ! | AGAGAAGGTGGTGGTGCTTG+AGG | - | chr8_2:2310066-2310085 | None:intergenic | 55.0% |
| ACATAAGGCGGCTTCGTCGG+CGG | - | chr8_2:2309073-2309092 | None:intergenic | 60.0% | |
| ACATAAGGCGGCTTCGTCGG+CGG | - | chr8_2:2309073-2309092 | None:intergenic | 60.0% | |
| !! | TGTTGGCGTGGTGGACACGG+TGG | - | chr8_2:2309107-2309126 | None:intergenic | 65.0% |
| !! | TGTTGGCGTGGTGGACACGG+TGG | - | chr8_2:2309107-2309126 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 2309018 | 2310260 | 2309018 | ID=Msa1227210;Name=Msa1227210 |
| chr8_2 | mRNA | 2309018 | 2310260 | 2309018 | ID=Msa1227210-mRNA-1;Parent=Msa1227210;Name=Msa1227210-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|0.75|1|1|4|0|298 |
| chr8_2 | exon | 2309018 | 2309203 | 2309018 | ID=Msa1227210-mRNA-1:exon:574;Parent=Msa1227210-mRNA-1 |
| chr8_2 | exon | 2309332 | 2309694 | 2309332 | ID=Msa1227210-mRNA-1:exon:575;Parent=Msa1227210-mRNA-1 |
| chr8_2 | exon | 2309838 | 2309909 | 2309838 | ID=Msa1227210-mRNA-1:exon:576;Parent=Msa1227210-mRNA-1 |
| chr8_2 | exon | 2309985 | 2310260 | 2309985 | ID=Msa1227210-mRNA-1:exon:577;Parent=Msa1227210-mRNA-1 |
| chr8_2 | CDS | 2309018 | 2309203 | 2309018 | ID=Msa1227210-mRNA-1:cds;Parent=Msa1227210-mRNA-1 |
| chr8_2 | CDS | 2309332 | 2309694 | 2309332 | ID=Msa1227210-mRNA-1:cds;Parent=Msa1227210-mRNA-1 |
| chr8_2 | CDS | 2309838 | 2309909 | 2309838 | ID=Msa1227210-mRNA-1:cds;Parent=Msa1227210-mRNA-1 |
| chr8_2 | CDS | 2309985 | 2310260 | 2309985 | ID=Msa1227210-mRNA-1:cds;Parent=Msa1227210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
