Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1227560 | KEH19246.1 | 83.333 | 96 | 8 | 1 | 1 | 96 | 52 | 139 | 3.90e-44 | 156 |
| Msa1227560 | KEH19246.1 | 86.154 | 130 | 10 | 1 | 96 | 225 | 18 | 139 | 3.53e-72 | 227 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1227560 | A0A072TPV3 | 83.333 | 96 | 8 | 1 | 1 | 96 | 52 | 139 | 1.86e-44 | 156 |
| Msa1227560 | A0A072TPV3 | 86.154 | 130 | 10 | 1 | 96 | 225 | 18 | 139 | 1.69e-72 | 227 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1227560 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1227560 | MtrunA17_Chr8g0358731 | 86.154 | 130 | 10 | 1 | 96 | 225 | 18 | 139 | 3.25e-76 | 227 |
| Msa1227560 | MtrunA17_Chr8g0358731 | 83.333 | 96 | 8 | 1 | 1 | 96 | 52 | 139 | 3.58e-48 | 156 |
| Msa1227560 | MtrunA17_Chr8g0337271 | 33.548 | 155 | 82 | 6 | 91 | 225 | 14 | 167 | 3.45e-18 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 57 sgRNAs with CRISPR-Local
Find 336 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTATTCGCCAGTACATTTA+TGG | 0.169458 | 8_2:-2824346 | Msa1227560:CDS |
| ACTATTCGCCAGTACATTTA+TGG | 0.169458 | 8_2:-2828860 | Msa1227560:CDS |
| CAAAGTGCTCTTAGAAGTTT+AGG | 0.233419 | 8_2:-2824525 | Msa1227560:CDS |
| ACGCCAAGATGGTCGTCAAT+TGG | 0.390051 | 8_2:-2824406 | Msa1227560:CDS |
| ACGCCAAGATGGTCGTCAAT+TGG | 0.390051 | 8_2:-2828920 | Msa1227560:CDS |
| TGCTGCACCTTGTCTGTCAT+AGG | 0.406280 | 8_2:+2824464 | None:intergenic |
| TGCTGCACCTTGTCTGTCAT+AGG | 0.406280 | 8_2:+2828978 | None:intergenic |
| TGCAATAATGATTGTGAATA+CGG | 0.437294 | 8_2:-2824582 | Msa1227560:CDS |
| ATTCCAACCGCTTGTGAAAG+TGG | 0.469159 | 8_2:-2824231 | Msa1227560:CDS |
| CTTGTAACTACGAGACATGA+TGG | 0.480223 | 8_2:+2824287 | None:intergenic |
| CTTGTAACTACGAGACATGA+TGG | 0.480223 | 8_2:+2828801 | None:intergenic |
| CATCTTGTAAATTTGCATGA+AGG | 0.483536 | 8_2:+2824260 | None:intergenic |
| ATTCCAACCGCTTGTGAAAG+TGG | 0.494857 | 8_2:-2828745 | Msa1227560:CDS |
| CATCTTGTAAATTTGCATGA+AGG | 0.497017 | 8_2:+2828774 | None:intergenic |
| TCTCCAATTGACGACCATCT+TGG | 0.509670 | 8_2:+2824403 | None:intergenic |
| TCTCCAATTGACGACCATCT+TGG | 0.509670 | 8_2:+2828917 | None:intergenic |
| TCTCCACTTTCACAAGCGGT+TGG | 0.513951 | 8_2:+2824228 | None:intergenic |
| TCTCCACTTTCACAAGCGGT+TGG | 0.513951 | 8_2:+2828742 | None:intergenic |
| ATCTAACATCATGAGTATGA+TGG | 0.517001 | 8_2:-2824499 | Msa1227560:CDS |
| ATCTAACATCATGAGTATGA+TGG | 0.517001 | 8_2:-2829013 | None:intergenic |
| AGATGGTCGTCAATTGGAGA+TGG | 0.520285 | 8_2:-2824400 | Msa1227560:CDS |
| AGATGGTCGTCAATTGGAGA+TGG | 0.520285 | 8_2:-2828914 | Msa1227560:CDS |
| TGAAAATCTTCATTTCTATG+TGG | 0.529192 | 8_2:+2824546 | None:intergenic |
| ACAAAAGGCCATAAATGTAC+TGG | 0.537910 | 8_2:+2824338 | None:intergenic |
| ACAAAAGGCCATAAATGTAC+TGG | 0.537910 | 8_2:+2828852 | None:intergenic |
| CTTAGCATAATACCTACAAA+AGG | 0.549427 | 8_2:+2824323 | None:intergenic |
| CTTAGCATAATACCTACAAA+AGG | 0.549427 | 8_2:+2828837 | None:intergenic |
| TTGTAACTACGAGACATGAT+GGG | 0.552157 | 8_2:+2824288 | None:intergenic |
| TTGTAACTACGAGACATGAT+GGG | 0.552157 | 8_2:+2828802 | None:intergenic |
| AGTTCAATATAGAGATTACC+TGG | 0.554385 | 8_2:+2824203 | None:intergenic |
| GCATGGCAACGACGCCAAGA+TGG | 0.574695 | 8_2:-2824417 | Msa1227560:CDS |
| GCATGGCAACGACGCCAAGA+TGG | 0.574695 | 8_2:-2828931 | Msa1227560:CDS |
| AAGAGATATCTTCCTTTGAG+AGG | 0.575332 | 8_2:-2824374 | Msa1227560:CDS |
| AAGAGATATCTTCCTTTGAG+AGG | 0.575332 | 8_2:-2828888 | Msa1227560:CDS |
| TTCTCAGTCAAGGTCGAGCA+TGG | 0.575982 | 8_2:-2824434 | Msa1227560:CDS |
| TTCTCAGTCAAGGTCGAGCA+TGG | 0.575982 | 8_2:-2828948 | Msa1227560:CDS |
| ATGCAAATTTACAAGATGAA+CGG | 0.585442 | 8_2:-2828769 | Msa1227560:CDS |
| GGATTCTCCACTTTCACAAG+CGG | 0.586954 | 8_2:+2824224 | None:intergenic |
| GGATTCTCCACTTTCACAAG+CGG | 0.586954 | 8_2:+2828738 | None:intergenic |
| CATGTCTCGTAGTTACAAGA+TGG | 0.593567 | 8_2:-2824283 | Msa1227560:CDS |
| CATGTCTCGTAGTTACAAGA+TGG | 0.593567 | 8_2:-2828797 | Msa1227560:CDS |
| GATGGTCGTCAATTGGAGAT+GGG | 0.600387 | 8_2:-2824399 | Msa1227560:CDS |
| GATGGTCGTCAATTGGAGAT+GGG | 0.600387 | 8_2:-2828913 | Msa1227560:CDS |
| CTACGAGACATGATGGGGAA+TGG | 0.605683 | 8_2:+2824294 | None:intergenic |
| CTACGAGACATGATGGGGAA+TGG | 0.605683 | 8_2:+2828808 | None:intergenic |
| GAATAGTGCTTTCCTCTCAA+AGG | 0.618448 | 8_2:+2824362 | None:intergenic |
| GAATAGTGCTTTCCTCTCAA+AGG | 0.618448 | 8_2:+2828876 | None:intergenic |
| GCAAACTCGATTCTCAGTCA+AGG | 0.622555 | 8_2:-2824444 | Msa1227560:CDS |
| GCAAACTCGATTCTCAGTCA+AGG | 0.622555 | 8_2:-2828958 | Msa1227560:CDS |
| CTTGTGAAAGTGGAGAATCC+AGG | 0.624797 | 8_2:-2824221 | Msa1227560:CDS |
| CTTGTGAAAGTGGAGAATCC+AGG | 0.624797 | 8_2:-2828735 | Msa1227560:intron |
| CATGAGTATGATGGAAAGTG+TGG | 0.625793 | 8_2:-2824490 | Msa1227560:CDS |
| CATGAGTATGATGGAAAGTG+TGG | 0.625793 | 8_2:-2829004 | Msa1227560:CDS |
| TGTAACTACGAGACATGATG+GGG | 0.692794 | 8_2:+2824289 | None:intergenic |
| TGTAACTACGAGACATGATG+GGG | 0.692794 | 8_2:+2828803 | None:intergenic |
| GTGGAAACCTATGACAGACA+AGG | 0.716652 | 8_2:-2824471 | Msa1227560:CDS |
| GTGGAAACCTATGACAGACA+AGG | 0.716652 | 8_2:-2828985 | Msa1227560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAATTAATTAATTTA+TGG | - | chr8_2:2825862-2825881 | Msa1227560:intron | 0.0% |
| !! | AAAAAAATTAATTAATTTAT+GGG | - | chr8_2:2825863-2825882 | Msa1227560:intron | 0.0% |
| !! | AAATAAAAATACAATATAGA+GGG | + | chr8_2:2824805-2824824 | None:intergenic | 10.0% |
| !! | TAAATAAAAATACAATATAG+AGG | + | chr8_2:2824806-2824825 | None:intergenic | 10.0% |
| !!! | TTTCATTTATTTTATTGAAT+GGG | - | chr8_2:2825419-2825438 | Msa1227560:intron | 10.0% |
| !! | ATATCAATCATATTATTTAT+AGG | - | chr8_2:2825722-2825741 | Msa1227560:intron | 10.0% |
| !!! | ATTTTCAAAAAGTAAATTTA+GGG | + | chr8_2:2826315-2826334 | None:intergenic | 10.0% |
| !!! | AATTTTCAAAAAGTAAATTT+AGG | + | chr8_2:2826316-2826335 | None:intergenic | 10.0% |
| !!! | AAAATTTAATTTTTCAAATC+TGG | + | chr8_2:2826434-2826453 | None:intergenic | 10.0% |
| !!! | AAATTTAATCTTTAAAAATC+TGG | + | chr8_2:2826505-2826524 | None:intergenic | 10.0% |
| !!! | AGATTTTTTTAAAAAAATTC+TGG | + | chr8_2:2826532-2826551 | None:intergenic | 10.0% |
| !!! | TGAATATTTTTATGATTTTT+TGG | - | chr8_2:2826656-2826675 | Msa1227560:intron | 10.0% |
| !!! | GAATATTTTTATGATTTTTT+GGG | - | chr8_2:2826657-2826676 | Msa1227560:intron | 10.0% |
| !!! | AATATTTTTATGATTTTTTG+GGG | - | chr8_2:2826658-2826677 | Msa1227560:intron | 10.0% |
| !!! | TATTTTTGATAAAAAAAAAG+AGG | - | chr8_2:2826979-2826998 | Msa1227560:intron | 10.0% |
| !! | TATAGAGTAATTTATATATA+TGG | - | chr8_2:2828426-2828445 | Msa1227560:intron | 10.0% |
| ! | CGGCGGGGGGGGGGGGGGGG+GGG | - | chr8_2:2827999-2828018 | Msa1227560:intron | 100.0% |
| !!! | ACACTATTTATATCAAATTT+TGG | - | chr8_2:2824599-2824618 | Msa1227560:intron | 15.0% |
| !!! | CTTTTGAAAATATTTTATGA+TGG | + | chr8_2:2825015-2825034 | None:intergenic | 15.0% |
| !!! | TCAATTTTAAAAGATTTTGA+AGG | + | chr8_2:2825130-2825149 | None:intergenic | 15.0% |
| !!! | TTTTTTTATTTGTTTACCTT+TGG | + | chr8_2:2825336-2825355 | None:intergenic | 15.0% |
| !! | AAAGGTAAACAAATAAAAAA+AGG | - | chr8_2:2825335-2825354 | Msa1227560:intron | 15.0% |
| !!! | CTTTCATTTATTTTATTGAA+TGG | - | chr8_2:2825418-2825437 | Msa1227560:intron | 15.0% |
| !! | AGTTTAAAAAAAACATTTGA+TGG | - | chr8_2:2826015-2826034 | Msa1227560:intron | 15.0% |
| !!! | GGATACAAATTTTAAAAAAA+AGG | + | chr8_2:2826413-2826432 | None:intergenic | 15.0% |
| !!! | TGGATACAAATTTTAAAAAA+AGG | + | chr8_2:2826414-2826433 | None:intergenic | 15.0% |
| !!! | TATATCCAGATTTTAAAAAA+AGG | + | chr8_2:2826557-2826576 | None:intergenic | 15.0% |
| !!! | AGGTAATTAGTATTATTTTA+AGG | + | chr8_2:2826764-2826783 | None:intergenic | 15.0% |
| !!! | TTTTCAGTTATTTTTTTCAA+TGG | + | chr8_2:2827254-2827273 | None:intergenic | 15.0% |
| !! | GAAATCTTATAAGAATTATT+TGG | + | chr8_2:2827416-2827435 | None:intergenic | 15.0% |
| !!! | GTTTTTTGTATGTTAAAAAA+GGG | - | chr8_2:2827858-2827877 | Msa1227560:intron | 15.0% |
| !!! | TTTTTTGTATGTTAAAAAAG+GGG | - | chr8_2:2827859-2827878 | Msa1227560:intron | 15.0% |
| !! | CTCTATATAAAGAAAAAAAT+TGG | + | chr8_2:2828413-2828432 | None:intergenic | 15.0% |
| !! | TGATATAAATAGTGTGTTAT+AGG | + | chr8_2:2824594-2824613 | None:intergenic | 20.0% |
| !!! | AATAGAAGGATTTGTTTTAT+TGG | + | chr8_2:2824899-2824918 | None:intergenic | 20.0% |
| !! | AAATCGTAGATAATATAAGT+GGG | + | chr8_2:2825159-2825178 | None:intergenic | 20.0% |
| !! | AAAATCGTAGATAATATAAG+TGG | + | chr8_2:2825160-2825179 | None:intergenic | 20.0% |
| !! | TATCAATTCAATCAATGATT+TGG | - | chr8_2:2825650-2825669 | Msa1227560:intron | 20.0% |
| !! | TTTGACCGAAATAAAATTTA+AGG | - | chr8_2:2825929-2825948 | Msa1227560:intron | 20.0% |
| !! | TTGACCGAAATAAAATTTAA+GGG | - | chr8_2:2825930-2825949 | Msa1227560:intron | 20.0% |
| !!! | AATGCCCTTAAATTTTATTT+CGG | + | chr8_2:2825937-2825956 | None:intergenic | 20.0% |
| !! | TCACAAAATAGAAAGAAATT+AGG | + | chr8_2:2826956-2826975 | None:intergenic | 20.0% |
| !!! | CGTTTTTTGTATGTTAAAAA+AGG | - | chr8_2:2827857-2827876 | Msa1227560:intron | 20.0% |
| !! | ATATAAATATCTATGTACGT+TGG | - | chr8_2:2828524-2828543 | Msa1227560:intron | 20.0% |
| ! | ATGCAAATTTACAAGATGAA+CGG | - | chr8_2:2824452-2824471 | Msa1227560:CDS | 25.0% |
| ! | TGAATATTAAAACCAAACGA+CGG | + | chr8_2:2824872-2824891 | None:intergenic | 25.0% |
| !! | ATCTCTACATTTGAAATAGA+AGG | + | chr8_2:2824913-2824932 | None:intergenic | 25.0% |
| ! | AATCGTAGATAATATAAGTG+GGG | + | chr8_2:2825158-2825177 | None:intergenic | 25.0% |
| ! | AGGGAACTTACAAAAATATA+AGG | + | chr8_2:2825235-2825254 | None:intergenic | 25.0% |
| ! | TAAAAAGAGAAAACTAAGGT+CGG | + | chr8_2:2825390-2825409 | None:intergenic | 25.0% |
| ! | AACCTAAAAAGAGAAAACTA+AGG | + | chr8_2:2825394-2825413 | None:intergenic | 25.0% |
| !!! | CATTTATTTTATTGAATGGG+TGG | - | chr8_2:2825422-2825441 | Msa1227560:intron | 25.0% |
| ! | ATTGATATAAATAAAGTGCG+TGG | + | chr8_2:2825710-2825729 | None:intergenic | 25.0% |
| ! | TATGCTATTAATTAGTGTGT+TGG | - | chr8_2:2825758-2825777 | Msa1227560:intron | 25.0% |
| !! | AAGACACTTGATTATGTTTT+CGG | + | chr8_2:2825889-2825908 | None:intergenic | 25.0% |
| !!! | ATTTTATTTCGGTCAAAGTA+AGG | + | chr8_2:2825926-2825945 | None:intergenic | 25.0% |
| !!! | TCTGACCTTTTTTTAAAATC+TGG | - | chr8_2:2826549-2826568 | Msa1227560:intron | 25.0% |
| !!! | CGATTTTAAGAGATACAAAA+AGG | + | chr8_2:2826784-2826803 | None:intergenic | 25.0% |
| ! | TATAGAAGAACATAATCTTG+TGG | - | chr8_2:2827177-2827196 | Msa1227560:intron | 25.0% |
| ! | AAGATACATCTTGTTGATAT+AGG | - | chr8_2:2827385-2827404 | Msa1227560:intron | 25.0% |
| !! | CTGAAAAATACCTTTTCTAT+TGG | + | chr8_2:2828361-2828380 | None:intergenic | 25.0% |
| ! | GTCAAAGGAATCTTAATATA+TGG | + | chr8_2:2828472-2828491 | None:intergenic | 25.0% |
| ! | TATGGATATACAAATGTCTA+TGG | + | chr8_2:2828558-2828577 | None:intergenic | 25.0% |
| ! | TGCAATAATGATTGTGAATA+CGG | - | chr8_2:2828639-2828658 | Msa1227560:intron | 25.0% |
| ! | TGAAAATCTTCATTTCTATG+TGG | + | chr8_2:2828678-2828697 | None:intergenic | 25.0% |
| CTTAGCATAATACCTACAAA+AGG | + | chr8_2:2824387-2824406 | None:intergenic | 30.0% | |
| CATCTTGTAAATTTGCATGA+AGG | + | chr8_2:2824450-2824469 | None:intergenic | 30.0% | |
| AGTTCAATATAGAGATTACC+TGG | + | chr8_2:2824507-2824526 | None:intergenic | 30.0% | |
| ATCTTGCATATTCATTTGGA+GGG | + | chr8_2:2824704-2824723 | None:intergenic | 30.0% | |
| !! | CTTTGTTTGTTCCTTTTATC+AGG | - | chr8_2:2824834-2824853 | Msa1227560:intron | 30.0% |
| GTACAAAAACTCCTGATAAA+AGG | + | chr8_2:2824848-2824867 | None:intergenic | 30.0% | |
| AATCTAATCGATCAACTCTA+TGG | + | chr8_2:2825054-2825073 | None:intergenic | 30.0% | |
| CCAAATAATGCTTCATGTTT+GGG | + | chr8_2:2825276-2825295 | None:intergenic | 30.0% | |
| TCCAAATAATGCTTCATGTT+TGG | + | chr8_2:2825277-2825296 | None:intergenic | 30.0% | |
| !! | GACCTTAGTTTTCTCTTTTT+AGG | - | chr8_2:2825389-2825408 | Msa1227560:intron | 30.0% |
| ! | TTTATTGAATGGGTGGTTTT+AGG | - | chr8_2:2825429-2825448 | Msa1227560:intron | 30.0% |
| AGAGAGAAAAAGATGATGAT+GGG | + | chr8_2:2825475-2825494 | None:intergenic | 30.0% | |
| TAGAGAGAAAAAGATGATGA+TGG | + | chr8_2:2825476-2825495 | None:intergenic | 30.0% | |
| CAAGACTAGAAATCAAACAA+CGG | + | chr8_2:2825598-2825617 | None:intergenic | 30.0% | |
| !! | ATATCGACTTAGTTCAGTTT+AGG | - | chr8_2:2825963-2825982 | Msa1227560:intron | 30.0% |
| !!! | AGTTCAGTTTAGGTTGTTTT+TGG | - | chr8_2:2825973-2825992 | Msa1227560:intron | 30.0% |
| CACAATTGGCAAAATATATG+GGG | + | chr8_2:2826082-2826101 | None:intergenic | 30.0% | |
| GCACAATTGGCAAAATATAT+GGG | + | chr8_2:2826083-2826102 | None:intergenic | 30.0% | |
| ATCAAAAAGGAGGAAAACTA+TGG | - | chr8_2:2826687-2826706 | Msa1227560:intron | 30.0% | |
| TCAAAAAGGAGGAAAACTAT+GGG | - | chr8_2:2826688-2826707 | Msa1227560:intron | 30.0% | |
| !!! | GTAGATAGTTAGTGCTATTT+TGG | - | chr8_2:2827027-2827046 | Msa1227560:intron | 30.0% |
| ATATGTGATTGCATTGTTGA+AGG | + | chr8_2:2827438-2827457 | None:intergenic | 30.0% | |
| AATGCAATCACATATATGCA+CGG | - | chr8_2:2827443-2827462 | Msa1227560:intron | 30.0% | |
| !! | GGAGTTGTTAGTTATTTTGT+CGG | - | chr8_2:2827640-2827659 | Msa1227560:intron | 30.0% |
| !! | GAGTTGTTAGTTATTTTGTC+GGG | - | chr8_2:2827641-2827660 | Msa1227560:intron | 30.0% |
| !! | TATTTGGGCTTTGTTTGTAT+TGG | - | chr8_2:2828303-2828322 | Msa1227560:intron | 30.0% |
| !! | ATTTGGGCTTTGTTTGTATT+GGG | - | chr8_2:2828304-2828323 | Msa1227560:intron | 30.0% |
| !!! | TTTTCTATTGGTTTTCGTTG+TGG | + | chr8_2:2828349-2828368 | None:intergenic | 30.0% |
| ACAACGAAAACCAATAGAAA+AGG | - | chr8_2:2828348-2828367 | Msa1227560:intron | 30.0% | |
| !! | GTTCAATGTTTTTACGTCAA+AGG | + | chr8_2:2828487-2828506 | None:intergenic | 30.0% |
| ATCTAACATCATGAGTATGA+TGG | - | chr8_2:2828722-2828741 | Msa1227560:intron | 30.0% | |
| CTTAGCATAATACCTACAAA+AGG | + | chr8_2:2824387-2824406 | None:intergenic | 30.0% | |
| CATCTTGTAAATTTGCATGA+AGG | + | chr8_2:2824450-2824469 | None:intergenic | 30.0% | |
| AAGAGATATCTTCCTTTGAG+AGG | - | chr8_2:2824333-2824352 | Msa1227560:CDS | 35.0% | |
| ACTATTCGCCAGTACATTTA+TGG | - | chr8_2:2824361-2824380 | Msa1227560:CDS | 35.0% | |
| ACAAAAGGCCATAAATGTAC+TGG | + | chr8_2:2824372-2824391 | None:intergenic | 35.0% | |
| ! | GTACATTTATGGCCTTTTGT+AGG | - | chr8_2:2824372-2824391 | Msa1227560:CDS | 35.0% |
| TTGTAACTACGAGACATGAT+GGG | + | chr8_2:2824422-2824441 | None:intergenic | 35.0% | |
| GTATACAACAATGCATCCAA+GGG | - | chr8_2:2824621-2824640 | Msa1227560:intron | 35.0% | |
| ! | TTCTGAAGAAAGTGATGACA+TGG | - | chr8_2:2824671-2824690 | Msa1227560:intron | 35.0% |
| GATCTTGCATATTCATTTGG+AGG | + | chr8_2:2824705-2824724 | None:intergenic | 35.0% | |
| TCGGATCTTGCATATTCATT+TGG | + | chr8_2:2824708-2824727 | None:intergenic | 35.0% | |
| ACTAACCACAATCTACTCTT+CGG | + | chr8_2:2824727-2824746 | None:intergenic | 35.0% | |
| ! | TACGATTTTTACCAAGTGCA+AGG | - | chr8_2:2825171-2825190 | Msa1227560:intron | 35.0% |
| ! | CCCAAACATGAAGCATTATT+TGG | - | chr8_2:2825273-2825292 | Msa1227560:intron | 35.0% |
| ATAAAGTGAACTCACTCCAA+AGG | - | chr8_2:2825317-2825336 | Msa1227560:intron | 35.0% | |
| !! | AAGATGATGATGGGTGATTT+CGG | + | chr8_2:2825466-2825485 | None:intergenic | 35.0% |
| ! | AGTGCTTTTCACATAGATCT+AGG | - | chr8_2:2825510-2825529 | Msa1227560:intron | 35.0% |
| CAACATCGCTAAAAACGTAA+AGG | + | chr8_2:2825793-2825812 | None:intergenic | 35.0% | |
| CGCACAATTGGCAAAATATA+TGG | + | chr8_2:2826084-2826103 | None:intergenic | 35.0% | |
| ! | AATCGCTCGTTTGAAACAAT+GGG | + | chr8_2:2826116-2826135 | None:intergenic | 35.0% |
| ! | AAATCGCTCGTTTGAAACAA+TGG | + | chr8_2:2826117-2826136 | None:intergenic | 35.0% |
| CACAATTGGCAAAATATAGG+GGG | + | chr8_2:2826142-2826161 | None:intergenic | 35.0% | |
| GCACAATTGGCAAAATATAG+GGG | + | chr8_2:2826143-2826162 | None:intergenic | 35.0% | |
| CGCACAATTGGCAAAATATA+GGG | + | chr8_2:2826084-2826103 | None:intergenic | 35.0% | |
| TCGCACAATTGGCAAAATAT+AGG | + | chr8_2:2826085-2826104 | None:intergenic | 35.0% | |
| ! | AATCGCTCGTTTGAAACAAT+GGG | + | chr8_2:2826116-2826135 | None:intergenic | 35.0% |
| ! | AAATCGCTCGTTTGAAACAA+TGG | + | chr8_2:2826117-2826136 | None:intergenic | 35.0% |
| ! | AATCGCTCGTTTGAAACAAT+GGG | + | chr8_2:2826116-2826135 | None:intergenic | 35.0% |
| ! | AAATCGCTCGTTTGAAACAA+TGG | + | chr8_2:2826117-2826136 | None:intergenic | 35.0% |
| CGCACAATTGGCAAAATATA+GGG | + | chr8_2:2826084-2826103 | None:intergenic | 35.0% | |
| ! | CCTATATTTTGCCAATTGTG+CGG | - | chr8_2:2826142-2826161 | Msa1227560:intron | 35.0% |
| ! | AATCGCTCGTTTGAAACAAT+GGG | + | chr8_2:2826116-2826135 | None:intergenic | 35.0% |
| ! | AAATCGCTCGTTTGAAACAA+TGG | + | chr8_2:2826117-2826136 | None:intergenic | 35.0% |
| ! | TTTGGGGTGCAAAATCAAAA+AGG | - | chr8_2:2826674-2826693 | Msa1227560:intron | 35.0% |
| CAAAAAGGAGGAAAACTATG+GGG | - | chr8_2:2826689-2826708 | Msa1227560:intron | 35.0% | |
| AGAAGAACATAATCTTGTGG+TGG | - | chr8_2:2827180-2827199 | Msa1227560:intron | 35.0% | |
| TTCTTGAAGAAGATCTTCGA+CGG | - | chr8_2:2827539-2827558 | Msa1227560:intron | 35.0% | |
| TCGACAAACATAGATAATCG+AGG | + | chr8_2:2827576-2827595 | None:intergenic | 35.0% | |
| AACTAACAACTCCACTCTAA+TGG | + | chr8_2:2827633-2827652 | None:intergenic | 35.0% | |
| TAAAACACTATGACGACCAA+CGG | + | chr8_2:2827821-2827840 | None:intergenic | 35.0% | |
| AACTTGTAATTGCCCACATA+CGG | - | chr8_2:2827884-2827903 | Msa1227560:intron | 35.0% | |
| ! | TTTTGATCAAGTACGATCAG+TGG | + | chr8_2:2827912-2827931 | None:intergenic | 35.0% |
| ACTGATCGTACTTGATCAAA+AGG | - | chr8_2:2827911-2827930 | Msa1227560:intron | 35.0% | |
| !! | TCATATTGACTTGAGCATCA+AGG | + | chr8_2:2828041-2828060 | None:intergenic | 35.0% |
| GAGAAAGAGAGAGTAGTTAA+AGG | - | chr8_2:2828089-2828108 | Msa1227560:intron | 35.0% | |
| AAAGAGAGAGTAGTTAAAGG+TGG | - | chr8_2:2828092-2828111 | Msa1227560:intron | 35.0% | |
| AAGAGAGAGTAGTTAAAGGT+GGG | - | chr8_2:2828093-2828112 | Msa1227560:intron | 35.0% | |
| TCTGTTCAAACGAACAGTAA+TGG | + | chr8_2:2828218-2828237 | None:intergenic | 35.0% | |
| ! | TGTGAGTAGTTTGTCAAATG+CGG | - | chr8_2:2828280-2828299 | Msa1227560:intron | 35.0% |
| AGTTTGTCAAATGCGGTATT+TGG | - | chr8_2:2828287-2828306 | Msa1227560:intron | 35.0% | |
| GTTTGTCAAATGCGGTATTT+GGG | - | chr8_2:2828288-2828307 | Msa1227560:intron | 35.0% | |
| GTATATCCATACATGAACGA+AGG | - | chr8_2:2828567-2828586 | Msa1227560:intron | 35.0% | |
| TTGTTTCCTTCGTTCATGTA+TGG | + | chr8_2:2828576-2828595 | None:intergenic | 35.0% | |
| ! | CAAAGTGCTCTTAGAAGTTT+AGG | - | chr8_2:2828696-2828715 | Msa1227560:intron | 35.0% |
| AAGAGATATCTTCCTTTGAG+AGG | - | chr8_2:2824333-2824352 | Msa1227560:CDS | 35.0% | |
| ACTATTCGCCAGTACATTTA+TGG | - | chr8_2:2824361-2824380 | Msa1227560:CDS | 35.0% | |
| ACAAAAGGCCATAAATGTAC+TGG | + | chr8_2:2824372-2824391 | None:intergenic | 35.0% | |
| ! | GTACATTTATGGCCTTTTGT+AGG | - | chr8_2:2824372-2824391 | Msa1227560:CDS | 35.0% |
| TTGTAACTACGAGACATGAT+GGG | + | chr8_2:2824422-2824441 | None:intergenic | 35.0% | |
| GAATAGTGCTTTCCTCTCAA+AGG | + | chr8_2:2824348-2824367 | None:intergenic | 40.0% | |
| TGTAACTACGAGACATGATG+GGG | + | chr8_2:2824421-2824440 | None:intergenic | 40.0% | |
| CTTGTAACTACGAGACATGA+TGG | + | chr8_2:2824423-2824442 | None:intergenic | 40.0% | |
| CATGTCTCGTAGTTACAAGA+TGG | - | chr8_2:2824424-2824443 | Msa1227560:CDS | 40.0% | |
| GGTATACAACAATGCATCCA+AGG | - | chr8_2:2824620-2824639 | Msa1227560:intron | 40.0% | |
| AAGATCCGAAGAGTAGATTG+TGG | - | chr8_2:2824719-2824738 | Msa1227560:intron | 40.0% | |
| GAAGAGTAGATTGTGGTTAG+TGG | - | chr8_2:2824726-2824745 | Msa1227560:intron | 40.0% | |
| ATTGTGGTTAGTGGTCTATG+TGG | - | chr8_2:2824735-2824754 | Msa1227560:intron | 40.0% | |
| !! | GTGTGGTTTGCTGATGTATT+TGG | - | chr8_2:2824767-2824786 | Msa1227560:intron | 40.0% |
| ! | GTTTGCTGATGTATTTGGTC+TGG | - | chr8_2:2824772-2824791 | Msa1227560:intron | 40.0% |
| ! | AGTTTTTGTACTCCGTCGTT+TGG | - | chr8_2:2824857-2824876 | Msa1227560:intron | 40.0% |
| AATCACAAGTACCTTGCACT+TGG | + | chr8_2:2825185-2825204 | None:intergenic | 40.0% | |
| GCTTCATGTTTGGGAAAGAA+GGG | + | chr8_2:2825267-2825286 | None:intergenic | 40.0% | |
| TGCTTCATGTTTGGGAAAGA+AGG | + | chr8_2:2825268-2825287 | None:intergenic | 40.0% | |
| !! | GAAAACTAAGGTCGGTTTGT+TGG | + | chr8_2:2825382-2825401 | None:intergenic | 40.0% |
| !! | AGATGATGATGGGTGATTTC+GGG | + | chr8_2:2825465-2825484 | None:intergenic | 40.0% |
| ACGTCAACATTGAAGATCCA+TGG | - | chr8_2:2825673-2825692 | Msa1227560:intron | 40.0% | |
| ACATTGAAGATCCATGGACA+TGG | - | chr8_2:2825679-2825698 | Msa1227560:intron | 40.0% | |
| CATTGAAGATCCATGGACAT+GGG | - | chr8_2:2825680-2825699 | Msa1227560:intron | 40.0% | |
| TAATCAAGTGTCTTGACGCT+TGG | - | chr8_2:2825895-2825914 | Msa1227560:intron | 40.0% | |
| ! | ATCGCTCGTTTGAAACAATG+GGG | + | chr8_2:2826115-2826134 | None:intergenic | 40.0% |
| ! | ATCGCTCGTTTGAAACAATG+GGG | + | chr8_2:2826115-2826134 | None:intergenic | 40.0% |
| ! | ATCGCTCGTTTGAAACAATG+GGG | + | chr8_2:2826115-2826134 | None:intergenic | 40.0% |
| CCGCACAATTGGCAAAATAT+AGG | + | chr8_2:2826256-2826275 | None:intergenic | 40.0% | |
| ! | ATCGCTCGTTTGAAACAATG+GGG | + | chr8_2:2826115-2826134 | None:intergenic | 40.0% |
| CCATGTCTACTCTAGATCAT+TGG | + | chr8_2:2827344-2827363 | None:intergenic | 40.0% | |
| ! | CCAATGATCTAGAGTAGACA+TGG | - | chr8_2:2827341-2827360 | Msa1227560:intron | 40.0% |
| TGAAATCACATCGGAATGAG+AGG | + | chr8_2:2827478-2827497 | None:intergenic | 40.0% | |
| TCTCATTCCGATGTGATTTC+AGG | - | chr8_2:2827477-2827496 | Msa1227560:intron | 40.0% | |
| GTCGAAGATCTTCTTCAAGA+AGG | + | chr8_2:2827540-2827559 | None:intergenic | 40.0% | |
| AACATAGATAATCGAGGAGC+AGG | + | chr8_2:2827570-2827589 | None:intergenic | 40.0% | |
| TAACAACTCCACTCTAATGG+AGG | + | chr8_2:2827630-2827649 | None:intergenic | 40.0% | |
| !! | ACTACCGTTGCAGTTTTGTA+CGG | - | chr8_2:2827936-2827955 | Msa1227560:intron | 40.0% |
| !! | GCGTCAGTTGATAACTAGAA+CGG | - | chr8_2:2827979-2827998 | Msa1227560:intron | 40.0% |
| !! | TCAGTTGATAACTAGAACGG+CGG | - | chr8_2:2827982-2828001 | Msa1227560:intron | 40.0% |
| GTGTTTGCAGAACAGTTGTA+TGG | - | chr8_2:2828115-2828134 | Msa1227560:intron | 40.0% | |
| CTCAGCGGTTATGAATTCAT+AGG | - | chr8_2:2828148-2828167 | Msa1227560:intron | 40.0% | |
| TTGGGCCTAAACGATTTGAT+CGG | - | chr8_2:2828322-2828341 | Msa1227560:intron | 40.0% | |
| ACGAAGGAAACAAACATGCT+AGG | - | chr8_2:2828583-2828602 | Msa1227560:intron | 40.0% | |
| CGAAGGAAACAAACATGCTA+GGG | - | chr8_2:2828584-2828603 | Msa1227560:intron | 40.0% | |
| ! | CATGAGTATGATGGAAAGTG+TGG | - | chr8_2:2828731-2828750 | Msa1227560:intron | 40.0% |
| GAATAGTGCTTTCCTCTCAA+AGG | + | chr8_2:2824348-2824367 | None:intergenic | 40.0% | |
| TGTAACTACGAGACATGATG+GGG | + | chr8_2:2824421-2824440 | None:intergenic | 40.0% | |
| CTTGTAACTACGAGACATGA+TGG | + | chr8_2:2824423-2824442 | None:intergenic | 40.0% | |
| CATGTCTCGTAGTTACAAGA+TGG | - | chr8_2:2824424-2824443 | Msa1227560:CDS | 40.0% | |
| GTGGAAACCTATGACAGACA+AGG | - | chr8_2:2824236-2824255 | Msa1227560:CDS | 45.0% | |
| GCAAACTCGATTCTCAGTCA+AGG | - | chr8_2:2824263-2824282 | Msa1227560:CDS | 45.0% | |
| TCTCCAATTGACGACCATCT+TGG | + | chr8_2:2824307-2824326 | None:intergenic | 45.0% | |
| AGATGGTCGTCAATTGGAGA+TGG | - | chr8_2:2824307-2824326 | Msa1227560:CDS | 45.0% | |
| GATGGTCGTCAATTGGAGAT+GGG | - | chr8_2:2824308-2824327 | Msa1227560:CDS | 45.0% | |
| ATTCCAACCGCTTGTGAAAG+TGG | - | chr8_2:2824476-2824495 | Msa1227560:CDS | 45.0% | |
| GGATTCTCCACTTTCACAAG+CGG | + | chr8_2:2824486-2824505 | None:intergenic | 45.0% | |
| CTTGTGAAAGTGGAGAATCC+AGG | - | chr8_2:2824486-2824505 | Msa1227560:CDS | 45.0% | |
| ! | AATGACGACTTGCTTACCCT+TGG | + | chr8_2:2824640-2824659 | None:intergenic | 45.0% |
| AGTGGTCTATGTGGTTGACA+TGG | - | chr8_2:2824744-2824763 | Msa1227560:intron | 45.0% | |
| GTGGTCTATGTGGTTGACAT+GGG | - | chr8_2:2824745-2824764 | Msa1227560:intron | 45.0% | |
| GCTGATGTATTTGGTCTGGA+TGG | - | chr8_2:2824776-2824795 | Msa1227560:intron | 45.0% | |
| GAAAGAAGGGAGACAACGAA+GGG | + | chr8_2:2825254-2825273 | None:intergenic | 45.0% | |
| ! | TCGCTCGTTTGAAACAATGG+GGG | + | chr8_2:2826114-2826133 | None:intergenic | 45.0% |
| GGGGTGCAAAATCAAAAAGG+AGG | - | chr8_2:2826677-2826696 | Msa1227560:intron | 45.0% | |
| AACGTCGTCGTAGTCACAAT+CGG | + | chr8_2:2827208-2827227 | None:intergenic | 45.0% | |
| ! | ATCATTGGTGCTTGAACGAG+GGG | + | chr8_2:2827329-2827348 | None:intergenic | 45.0% |
| ! | GATCATTGGTGCTTGAACGA+GGG | + | chr8_2:2827330-2827349 | None:intergenic | 45.0% |
| ! | AGATCATTGGTGCTTGAACG+AGG | + | chr8_2:2827331-2827350 | None:intergenic | 45.0% |
| TCCTCGTCCTGAAATCACAT+CGG | + | chr8_2:2827487-2827506 | None:intergenic | 45.0% | |
| ATGTTTGTCGATGAACCGTG+CGG | - | chr8_2:2827585-2827604 | Msa1227560:intron | 45.0% | |
| !! | GTTATTTTGTCGGGTCGAAG+AGG | - | chr8_2:2827650-2827669 | Msa1227560:intron | 45.0% |
| TGCTGGGAATTTCCTCCAAT+AGG | - | chr8_2:2827719-2827738 | Msa1227560:intron | 45.0% | |
| GCTGGGAATTTCCTCCAATA+GGG | - | chr8_2:2827720-2827739 | Msa1227560:intron | 45.0% | |
| CTTGTAGAAAGCCCTATTGG+AGG | + | chr8_2:2827734-2827753 | None:intergenic | 45.0% | |
| CCTCTTGTAGAAAGCCCTAT+TGG | + | chr8_2:2827737-2827756 | None:intergenic | 45.0% | |
| CCAATAGGGCTTTCTACAAG+AGG | - | chr8_2:2827734-2827753 | Msa1227560:intron | 45.0% | |
| ACCACCGTACAAAACTGCAA+CGG | + | chr8_2:2827943-2827962 | None:intergenic | 45.0% | |
| !! | CAGTTGATAACTAGAACGGC+GGG | - | chr8_2:2827983-2828002 | Msa1227560:intron | 45.0% |
| !! | AGTTGATAACTAGAACGGCG+GGG | - | chr8_2:2827984-2828003 | Msa1227560:intron | 45.0% |
| ATAGGAAATGTAACCGCCGA+TGG | - | chr8_2:2828166-2828185 | Msa1227560:intron | 45.0% | |
| AACCGCCGATGGTAGATTAT+CGG | - | chr8_2:2828177-2828196 | Msa1227560:intron | 45.0% | |
| GTGGACCGATCAAATCGTTT+AGG | + | chr8_2:2828330-2828349 | None:intergenic | 45.0% | |
| GTGGAAACCTATGACAGACA+AGG | - | chr8_2:2824236-2824255 | Msa1227560:CDS | 45.0% | |
| GCAAACTCGATTCTCAGTCA+AGG | - | chr8_2:2824263-2824282 | Msa1227560:CDS | 45.0% | |
| TCTCCAATTGACGACCATCT+TGG | + | chr8_2:2824307-2824326 | None:intergenic | 45.0% | |
| AGATGGTCGTCAATTGGAGA+TGG | - | chr8_2:2824307-2824326 | Msa1227560:CDS | 45.0% | |
| GATGGTCGTCAATTGGAGAT+GGG | - | chr8_2:2824308-2824327 | Msa1227560:CDS | 45.0% | |
| ATTCCAACCGCTTGTGAAAG+TGG | - | chr8_2:2824476-2824495 | Msa1227560:CDS | 45.0% | |
| GGATTCTCCACTTTCACAAG+CGG | + | chr8_2:2824486-2824505 | None:intergenic | 45.0% | |
| CTTGTGAAAGTGGAGAATCC+AGG | - | chr8_2:2824486-2824505 | Msa1227560:CDS | 45.0% | |
| !! | AATTAAGATAAATTAAAATA+AGG | - | chr8_2:2826040-2826059 | Msa1227560:intron | 5.0% |
| !!! | TTTTAAAATATAAAAAAATC+TGG | + | chr8_2:2826368-2826387 | None:intergenic | 5.0% |
| !!! | AAATTTTTTTTAAAAAATTC+TGG | + | chr8_2:2826460-2826479 | None:intergenic | 5.0% |
| !!! | TTCTAATTTTTTAAATTTTT+TGG | - | chr8_2:2826625-2826644 | Msa1227560:intron | 5.0% |
| !!! | TAAATATTTTATTAATCATA+TGG | + | chr8_2:2826891-2826910 | None:intergenic | 5.0% |
| !! | TATGATTAATAAAATATTTA+AGG | - | chr8_2:2826891-2826910 | Msa1227560:intron | 5.0% |
| TGCTGCACCTTGTCTGTCAT+AGG | + | chr8_2:2824246-2824265 | None:intergenic | 50.0% | |
| TTCTCAGTCAAGGTCGAGCA+TGG | - | chr8_2:2824273-2824292 | Msa1227560:CDS | 50.0% | |
| ACGCCAAGATGGTCGTCAAT+TGG | - | chr8_2:2824301-2824320 | Msa1227560:CDS | 50.0% | |
| ! | CTACGAGACATGATGGGGAA+TGG | + | chr8_2:2824416-2824435 | None:intergenic | 50.0% |
| TCTCCACTTTCACAAGCGGT+TGG | + | chr8_2:2824482-2824501 | None:intergenic | 50.0% | |
| CTATGTGGTTGACATGGGTG+TGG | - | chr8_2:2824750-2824769 | Msa1227560:intron | 50.0% | |
| ! | GCAAGGTACTTGTGATTGCG+AGG | - | chr8_2:2825188-2825207 | Msa1227560:intron | 50.0% |
| AGGTACTTGTGATTGCGAGG+TGG | - | chr8_2:2825191-2825210 | Msa1227560:intron | 50.0% | |
| GGAAAGAAGGGAGACAACGA+AGG | + | chr8_2:2825255-2825274 | None:intergenic | 50.0% | |
| !! | CTAAGGTCGGTTTGTTGGAG+AGG | + | chr8_2:2825377-2825396 | None:intergenic | 50.0% |
| GGGGTGCAAAATCGCACAAT+TGG | + | chr8_2:2826708-2826727 | None:intergenic | 50.0% | |
| GGGGTGCAAAATCGCACAAT+TGG | + | chr8_2:2826708-2826727 | None:intergenic | 50.0% | |
| TCCGATGTGATTTCAGGACG+AGG | - | chr8_2:2827483-2827502 | Msa1227560:intron | 50.0% | |
| ! | GAGCATTGCCTCCATTAGAG+TGG | - | chr8_2:2827619-2827638 | Msa1227560:intron | 50.0% |
| CAACAGGTGATTCGTCTGCA+GGG | + | chr8_2:2827692-2827711 | None:intergenic | 50.0% | |
| CTGCAGACGAATCACCTGTT+GGG | - | chr8_2:2827691-2827710 | Msa1227560:intron | 50.0% | |
| TGCAGACGAATCACCTGTTG+GGG | - | chr8_2:2827692-2827711 | Msa1227560:intron | 50.0% | |
| AGGGCTTTCTACAAGAGGCA+AGG | - | chr8_2:2827739-2827758 | Msa1227560:intron | 50.0% | |
| GCTTTCTACAAGAGGCAAGG+AGG | - | chr8_2:2827742-2827761 | Msa1227560:intron | 50.0% | |
| AACACTATGACGACCAACGG+TGG | + | chr8_2:2827818-2827837 | None:intergenic | 50.0% | |
| !! | ACCGTTGCAGTTTTGTACGG+TGG | - | chr8_2:2827939-2827958 | Msa1227560:intron | 50.0% |
| !! | GTTGATAACTAGAACGGCGG+GGG | - | chr8_2:2827985-2828004 | Msa1227560:intron | 50.0% |
| ! | TTGATAACTAGAACGGCGGG+GGG | - | chr8_2:2827986-2828005 | Msa1227560:intron | 50.0% |
| ACCGCCGATGGTAGATTATC+GGG | - | chr8_2:2828178-2828197 | Msa1227560:intron | 50.0% | |
| TCCCGATAATCTACCATCGG+CGG | + | chr8_2:2828182-2828201 | None:intergenic | 50.0% | |
| GCCTCCCGATAATCTACCAT+CGG | + | chr8_2:2828185-2828204 | None:intergenic | 50.0% | |
| TGCTGCACCTTGTCTGTCAT+AGG | + | chr8_2:2824246-2824265 | None:intergenic | 50.0% | |
| TTCTCAGTCAAGGTCGAGCA+TGG | - | chr8_2:2824273-2824292 | Msa1227560:CDS | 50.0% | |
| ACGCCAAGATGGTCGTCAAT+TGG | - | chr8_2:2824301-2824320 | Msa1227560:CDS | 50.0% | |
| ! | CTACGAGACATGATGGGGAA+TGG | + | chr8_2:2824416-2824435 | None:intergenic | 50.0% |
| TCTCCACTTTCACAAGCGGT+TGG | + | chr8_2:2824482-2824501 | None:intergenic | 50.0% | |
| GCGTGGAATACCCATGTCCA+TGG | + | chr8_2:2825693-2825712 | None:intergenic | 55.0% | |
| GGGGTGCAAAATCGCACAAC+TGG | + | chr8_2:2826207-2826226 | None:intergenic | 55.0% | |
| GGGGTGCAAAACCGCACAAT+TGG | + | chr8_2:2826267-2826286 | None:intergenic | 55.0% | |
| GGACTCAACCTACGTGTCGT+AGG | + | chr8_2:2827519-2827538 | None:intergenic | 55.0% | |
| CCAACAGGTGATTCGTCTGC+AGG | + | chr8_2:2827693-2827712 | None:intergenic | 55.0% | |
| CCTGCAGACGAATCACCTGT+TGG | - | chr8_2:2827690-2827709 | Msa1227560:intron | 55.0% | |
| GCAGACGAATCACCTGTTGG+GGG | - | chr8_2:2827693-2827712 | Msa1227560:intron | 55.0% | |
| ! | GCAAGGAGGTATGTTCGTCC+CGG | - | chr8_2:2827756-2827775 | Msa1227560:intron | 55.0% |
| TATGTTCGTCCCGGTAGACG+CGG | - | chr8_2:2827765-2827784 | Msa1227560:intron | 55.0% | |
| GAGGCATGAACTTCCACCGT+TGG | - | chr8_2:2827802-2827821 | Msa1227560:intron | 55.0% | |
| TGATAACTAGAACGGCGGGG+GGG | - | chr8_2:2827987-2828006 | Msa1227560:intron | 55.0% | |
| TATGGCACACGTGTGCTCAG+CGG | - | chr8_2:2828133-2828152 | Msa1227560:intron | 55.0% | |
| GCCGATGGTAGATTATCGGG+AGG | - | chr8_2:2828181-2828200 | Msa1227560:intron | 55.0% | |
| GCATGGCAACGACGCCAAGA+TGG | - | chr8_2:2824290-2824309 | Msa1227560:CDS | 60.0% | |
| !! | GAAGAGCGCCTACGACACGT+AGG | - | chr8_2:2827508-2827527 | Msa1227560:intron | 60.0% |
| GCTCAAGAACCTGCTCCGCA+CGG | + | chr8_2:2827603-2827622 | None:intergenic | 60.0% | |
| TGTCGGGTCGAAGAGGACCA+AGG | - | chr8_2:2827657-2827676 | Msa1227560:intron | 60.0% | |
| GGGTCGAAGAGGACCAAGGT+GGG | - | chr8_2:2827661-2827680 | Msa1227560:intron | 60.0% | |
| GGTCGAAGAGGACCAAGGTG+GGG | - | chr8_2:2827662-2827681 | Msa1227560:intron | 60.0% | |
| AGGTGATTCGTCTGCAGGGC+CGG | + | chr8_2:2827688-2827707 | None:intergenic | 60.0% | |
| TCACCTGTTGGGGGATCTGC+TGG | - | chr8_2:2827702-2827721 | Msa1227560:intron | 60.0% | |
| CACCTGTTGGGGGATCTGCT+GGG | - | chr8_2:2827703-2827722 | Msa1227560:intron | 60.0% | |
| TTCCCAGCAGATCCCCCAAC+AGG | + | chr8_2:2827708-2827727 | None:intergenic | 60.0% | |
| CAAAGTCCACCGCGTCTACC+GGG | + | chr8_2:2827777-2827796 | None:intergenic | 60.0% | |
| GCAAAGTCCACCGCGTCTAC+CGG | + | chr8_2:2827778-2827797 | None:intergenic | 60.0% | |
| CGATCAGTGGCGCCGTATGT+GGG | + | chr8_2:2827899-2827918 | None:intergenic | 60.0% | |
| ACGATCAGTGGCGCCGTATG+TGG | + | chr8_2:2827900-2827919 | None:intergenic | 60.0% | |
| GATAACTAGAACGGCGGGGG+GGG | - | chr8_2:2827988-2828007 | Msa1227560:intron | 60.0% | |
| ATAACTAGAACGGCGGGGGG+GGG | - | chr8_2:2827989-2828008 | Msa1227560:intron | 60.0% | |
| !! | GGGGGTGCTTAGAGCAAAGG+TGG | + | chr8_2:2828241-2828260 | None:intergenic | 60.0% |
| !! | CGAGGGGGTGCTTAGAGCAA+AGG | + | chr8_2:2828244-2828263 | None:intergenic | 60.0% |
| ! | TTGCTCTAAGCACCCCCTCG+CGG | - | chr8_2:2828244-2828263 | Msa1227560:intron | 60.0% |
| GCATGGCAACGACGCCAAGA+TGG | - | chr8_2:2824290-2824309 | Msa1227560:CDS | 60.0% | |
| GTCGATGAACCGTGCGGAGC+AGG | - | chr8_2:2827591-2827610 | Msa1227560:intron | 65.0% | |
| CGGGTCGAAGAGGACCAAGG+TGG | - | chr8_2:2827660-2827679 | Msa1227560:intron | 65.0% | |
| GAAGAGGACCAAGGTGGGGC+CGG | - | chr8_2:2827666-2827685 | Msa1227560:intron | 65.0% | |
| ! | CGCGGTGGACTTTGCGCTAG+AGG | - | chr8_2:2827783-2827802 | Msa1227560:intron | 65.0% |
| TAACTAGAACGGCGGGGGGG+GGG | - | chr8_2:2827990-2828009 | Msa1227560:intron | 65.0% | |
| ! | TGCTCTAAGCACCCCCTCGC+GGG | - | chr8_2:2828245-2828264 | Msa1227560:intron | 65.0% |
| AACACACCCCTTCCCCGCGA+GGG | + | chr8_2:2828261-2828280 | None:intergenic | 65.0% | |
| GTTCGTCCCGGTAGACGCGG+TGG | - | chr8_2:2827768-2827787 | Msa1227560:intron | 70.0% | |
| AACTAGAACGGCGGGGGGGG+GGG | - | chr8_2:2827991-2828010 | Msa1227560:intron | 70.0% | |
| ! | GCTCTAAGCACCCCCTCGCG+GGG | - | chr8_2:2828246-2828265 | Msa1227560:intron | 70.0% |
| TAAGCACCCCCTCGCGGGGA+AGG | - | chr8_2:2828250-2828269 | Msa1227560:intron | 70.0% | |
| AAGCACCCCCTCGCGGGGAA+GGG | - | chr8_2:2828251-2828270 | Msa1227560:intron | 70.0% | |
| ACACACCCCTTCCCCGCGAG+GGG | + | chr8_2:2828260-2828279 | None:intergenic | 70.0% | |
| CAACACACCCCTTCCCCGCG+AGG | + | chr8_2:2828262-2828281 | None:intergenic | 70.0% | |
| ACTAGAACGGCGGGGGGGGG+GGG | - | chr8_2:2827992-2828011 | Msa1227560:intron | 75.0% | |
| AGCACCCCCTCGCGGGGAAG+GGG | - | chr8_2:2828252-2828271 | Msa1227560:intron | 75.0% | |
| CACACCCCTTCCCCGCGAGG+GGG | + | chr8_2:2828259-2828278 | None:intergenic | 75.0% | |
| ! | CTGCAGGGCCGGCCCCACCT+TGG | + | chr8_2:2827677-2827696 | None:intergenic | 80.0% |
| ! | CTAGAACGGCGGGGGGGGGG+GGG | - | chr8_2:2827993-2828012 | Msa1227560:intron | 80.0% |
| ! | TAGAACGGCGGGGGGGGGGG+GGG | - | chr8_2:2827994-2828013 | Msa1227560:intron | 80.0% |
| !! | GGGGGGGGGGGGGTGTGTGA+CGG | - | chr8_2:2828009-2828028 | Msa1227560:intron | 80.0% |
| ! | AGAACGGCGGGGGGGGGGGG+GGG | - | chr8_2:2827995-2828014 | Msa1227560:intron | 85.0% |
| ! | GAACGGCGGGGGGGGGGGGG+GGG | - | chr8_2:2827996-2828015 | Msa1227560:intron | 90.0% |
| ! | AACGGCGGGGGGGGGGGGGG+GGG | - | chr8_2:2827997-2828016 | Msa1227560:intron | 90.0% |
| ! | ACGGCGGGGGGGGGGGGGGG+GGG | - | chr8_2:2827998-2828017 | Msa1227560:intron | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 2824218 | 2829025 | 2824218 | ID=Msa1227560;Name=Msa1227560 |
| chr8_2 | mRNA | 2824218 | 2829025 | 2824218 | ID=Msa1227560-mRNA-1;Parent=Msa1227560;Name=Msa1227560-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0|0|1|1|1|2|0|226 |
| chr8_2 | exon | 2828736 | 2829025 | 2828736 | ID=Msa1227560-mRNA-1:exon:763;Parent=Msa1227560-mRNA-1 |
| chr8_2 | exon | 2824218 | 2824608 | 2824218 | ID=Msa1227560-mRNA-1:exon:762;Parent=Msa1227560-mRNA-1 |
| chr8_2 | CDS | 2828736 | 2829025 | 2828736 | ID=Msa1227560-mRNA-1:cds;Parent=Msa1227560-mRNA-1 |
| chr8_2 | CDS | 2824218 | 2824608 | 2824218 | ID=Msa1227560-mRNA-1:cds;Parent=Msa1227560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
