Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1230530 | XP_003626931.1 | 95.405 | 370 | 17 | 0 | 1 | 370 | 1 | 370 | 0.0 | 731 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1230530 | G7LF49 | 95.405 | 370 | 17 | 0 | 1 | 370 | 1 | 370 | 0.0 | 731 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1230530 | TR | mTERF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1230530 | MtrunA17_Chr8g0339041 | 95.405 | 370 | 17 | 0 | 1 | 370 | 1 | 370 | 0.0 | 731 |
| Msa1230530 | MtrunA17_Chr2g0296121 | 23.368 | 291 | 210 | 8 | 63 | 348 | 172 | 454 | 1.44e-13 | 71.6 |
| Msa1230530 | MtrunA17_Chr2g0296301 | 20.130 | 308 | 233 | 9 | 63 | 363 | 80 | 381 | 1.96e-12 | 68.2 |
| Msa1230530 | MtrunA17_Chr2g0295741 | 22.680 | 291 | 212 | 7 | 63 | 348 | 92 | 374 | 8.61e-12 | 65.9 |
| Msa1230530 | MtrunA17_Chr2g0295731 | 20.139 | 288 | 225 | 4 | 62 | 348 | 92 | 375 | 1.01e-11 | 65.9 |
| Msa1230530 | MtrunA17_Chr4g0043941 | 21.951 | 246 | 182 | 4 | 63 | 298 | 17 | 262 | 1.64e-11 | 64.7 |
| Msa1230530 | MtrunA17_Chr2g0296111 | 21.154 | 312 | 232 | 8 | 28 | 333 | 52 | 355 | 4.00e-11 | 63.9 |
| Msa1230530 | MtrunA17_Chr2g0296151 | 21.918 | 292 | 215 | 7 | 62 | 348 | 85 | 368 | 5.72e-11 | 63.5 |
| Msa1230530 | MtrunA17_Chr2g0286191 | 21.338 | 314 | 230 | 10 | 45 | 351 | 57 | 360 | 6.82e-11 | 63.2 |
| Msa1230530 | MtrunA17_Chr2g0296711 | 21.812 | 298 | 219 | 9 | 63 | 353 | 99 | 389 | 7.24e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1230530 | AT1G79220.1 | 48.485 | 330 | 165 | 3 | 44 | 370 | 72 | 399 | 2.04e-104 | 313 |
| Msa1230530 | AT1G21150.3 | 22.656 | 256 | 190 | 5 | 48 | 297 | 47 | 300 | 1.19e-11 | 65.9 |
| Msa1230530 | AT1G21150.1 | 22.656 | 256 | 190 | 5 | 48 | 297 | 83 | 336 | 1.39e-11 | 65.9 |
| Msa1230530 | AT1G21150.2 | 22.441 | 254 | 193 | 4 | 48 | 297 | 147 | 400 | 2.06e-11 | 65.5 |
| Msa1230530 | AT5G64950.1 | 25.090 | 279 | 183 | 7 | 87 | 348 | 107 | 376 | 2.14e-11 | 65.1 |
| Msa1230530 | AT1G62010.1 | 20.846 | 331 | 216 | 9 | 57 | 347 | 75 | 399 | 2.39e-11 | 65.1 |
| Msa1230530 | AT1G61990.2 | 21.212 | 330 | 205 | 9 | 62 | 349 | 94 | 410 | 5.08e-11 | 64.3 |
| Msa1230530 | AT1G61990.1 | 21.212 | 330 | 205 | 9 | 62 | 349 | 94 | 410 | 5.08e-11 | 64.3 |
Find 57 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCTTCGATTTCTTTCAAT+TGG | 0.227300 | 8_2:-6539515 | Msa1230530:CDS |
| ACTTCGCTTGCTTAGTGATT+TGG | 0.257285 | 8_2:-6539246 | Msa1230530:CDS |
| ATTGACAATGTCAAAATATT+AGG | 0.269638 | 8_2:+6538765 | None:intergenic |
| CTTCGCTTGCTTAGTGATTT+GGG | 0.280618 | 8_2:-6539245 | Msa1230530:CDS |
| AAGAGTTAGGTATACCAAAA+AGG | 0.286125 | 8_2:-6539019 | Msa1230530:CDS |
| GGAAATTGCTGATGAGTTAA+TGG | 0.297355 | 8_2:-6538505 | Msa1230530:CDS |
| TTGCTTAGTGATTTGGGTTT+AGG | 0.299185 | 8_2:-6539239 | Msa1230530:CDS |
| AAATATGTGGTGACATTAAT+AGG | 0.301744 | 8_2:-6538882 | Msa1230530:CDS |
| TAGCAGTTTCATCAAGGAAT+TGG | 0.311012 | 8_2:-6538449 | Msa1230530:CDS |
| CAAGCCTCTCGTCGAAATTA+TGG | 0.312035 | 8_2:+6539156 | None:intergenic |
| AGCAATGAAGGTACAGAATA+TGG | 0.327499 | 8_2:-6538616 | Msa1230530:CDS |
| ATATTTGAAAACAACAGATA+TGG | 0.357754 | 8_2:+6538669 | None:intergenic |
| TTTGACATTGTCAATTGATA+AGG | 0.373162 | 8_2:-6538757 | Msa1230530:CDS |
| TGCAAAATGTTGAAGACAAA+TGG | 0.380077 | 8_2:-6539382 | Msa1230530:CDS |
| TTGCTGTGGTGAATGTAAAA+TGG | 0.394132 | 8_2:+6539477 | None:intergenic |
| TGCTTCGATTTCTTTCAATT+GGG | 0.402159 | 8_2:-6539514 | Msa1230530:CDS |
| TTCATTGCTAGAAGCACTCT+TGG | 0.407140 | 8_2:+6538630 | None:intergenic |
| GCGCAATGCGGATCCTTCTC+AGG | 0.407457 | 8_2:-6539279 | Msa1230530:CDS |
| TATGTCATTGTTTGAGTCAA+AGG | 0.408420 | 8_2:-6539126 | Msa1230530:CDS |
| TTGTAAAGATTATCAATTGT+AGG | 0.408436 | 8_2:-6539205 | Msa1230530:CDS |
| CATCAGCAATTTCCTTATCA+TGG | 0.411377 | 8_2:+6538514 | None:intergenic |
| GTTGCACAGTATGAAGAGTT+AGG | 0.413445 | 8_2:-6539032 | Msa1230530:CDS |
| ATGGAATATATAAGTAGGAT+TGG | 0.421574 | 8_2:-6538930 | Msa1230530:CDS |
| AGCTGGGACTTTCGTCGAAT+AGG | 0.435629 | 8_2:+6539421 | None:intergenic |
| TGTGGAAACAATTCGCGAAA+AGG | 0.448608 | 8_2:-6538850 | Msa1230530:CDS |
| CCTCAATGCTCTAAGTATTG+AGG | 0.451275 | 8_2:+6538575 | None:intergenic |
| CTCAATGCTCTAAGTATTGA+GGG | 0.456627 | 8_2:+6538576 | None:intergenic |
| TTCCTTTGACGATGAGAAGA+TGG | 0.459653 | 8_2:-6538949 | Msa1230530:CDS |
| GTCAAAGGAAATGCTTCATA+AGG | 0.473131 | 8_2:-6539111 | Msa1230530:CDS |
| TGGAATATATAAGTAGGATT+GGG | 0.487565 | 8_2:-6538929 | Msa1230530:CDS |
| GATCCGCATTGCGCAAAGAC+GGG | 0.492040 | 8_2:+6539288 | None:intergenic |
| TTCAAAATTGTACAAATATG+TGG | 0.504006 | 8_2:-6538895 | Msa1230530:CDS |
| GTTTGTCAGATGCCATGATA+AGG | 0.508257 | 8_2:-6538526 | Msa1230530:CDS |
| TATTTGAAAACAACAGATAT+GGG | 0.512551 | 8_2:+6538670 | None:intergenic |
| CATATAAAAGTAGTTCAGAA+AGG | 0.515005 | 8_2:+6538411 | None:intergenic |
| GGATCCGCATTGCGCAAAGA+CGG | 0.525836 | 8_2:+6539287 | None:intergenic |
| AGAGATTAGCAGTTTCATCA+AGG | 0.527319 | 8_2:-6538455 | Msa1230530:CDS |
| AAGAGTGCTTCTAGCAATGA+AGG | 0.527541 | 8_2:-6538628 | Msa1230530:CDS |
| CAATGAAGGGTTTCTTGCAA+TGG | 0.534493 | 8_2:+6539088 | None:intergenic |
| AGAAGATGGAATATATAAGT+AGG | 0.535407 | 8_2:-6538935 | Msa1230530:CDS |
| ATATAAAAGTAGTTCAGAAA+GGG | 0.539481 | 8_2:+6538412 | None:intergenic |
| GACTTTCGTCGAATAGGTAG+CGG | 0.549016 | 8_2:+6539427 | None:intergenic |
| AAGTAGGATTGGGCTTTCCA+AGG | 0.560292 | 8_2:-6538919 | Msa1230530:CDS |
| TTCCATCTTCTCATCGTCAA+AGG | 0.562047 | 8_2:+6538947 | None:intergenic |
| TGTCAATTGATAAGGTTCAA+AGG | 0.565097 | 8_2:-6538749 | Msa1230530:CDS |
| TCAAGGAATTGGACTACTAG+AGG | 0.573509 | 8_2:-6538438 | Msa1230530:CDS |
| CATTGAGGATGTCCGAGGAG+AGG | 0.582695 | 8_2:-6538560 | Msa1230530:CDS |
| ATTAATAGGCATCTCTCGTG+TGG | 0.591058 | 8_2:-6538868 | Msa1230530:CDS |
| GAAGTTCTTGAAATAACAGT+CGG | 0.598042 | 8_2:+6538969 | None:intergenic |
| ACTTTCGTCGAATAGGTAGC+GGG | 0.601121 | 8_2:+6539428 | None:intergenic |
| GAAAGTCCCAGCTCAAAATG+AGG | 0.604863 | 8_2:-6539411 | Msa1230530:CDS |
| CCTCAATACTTAGAGCATTG+AGG | 0.607754 | 8_2:-6538575 | Msa1230530:CDS |
| TTAACCATAATTTCGACGAG+AGG | 0.625796 | 8_2:-6539160 | Msa1230530:CDS |
| AGTTTCGACTGAACCTGAGA+AGG | 0.646506 | 8_2:+6539266 | None:intergenic |
| AAATGTTGAAGACAAATGGA+AGG | 0.655802 | 8_2:-6539378 | Msa1230530:CDS |
| TAGAGCATTGAGGATGTCCG+AGG | 0.681763 | 8_2:-6538565 | Msa1230530:CDS |
| TTGCCCGTCTTTGCGCAATG+CGG | 0.682750 | 8_2:-6539291 | Msa1230530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTAATGGAATTTTATAAA+AGG | - | chr8_2:6539449-6539468 | Msa1230530:CDS | 15.0% |
| !!! | AGTTAATGGAATTTTATAAA+AGG | - | chr8_2:6539449-6539468 | Msa1230530:CDS | 15.0% |
| !! | TTGTAAAGATTATCAATTGT+AGG | - | chr8_2:6538735-6538754 | Msa1230530:CDS | 20.0% |
| !! | TTCAAAATTGTACAAATATG+TGG | - | chr8_2:6539045-6539064 | Msa1230530:CDS | 20.0% |
| !!! | TTTTACAAAGTATGGTTTTT+CGG | - | chr8_2:6539120-6539139 | Msa1230530:CDS | 20.0% |
| !! | ATTGACAATGTCAAAATATT+AGG | + | chr8_2:6539178-6539197 | None:intergenic | 20.0% |
| !! | TATTTGAAAACAACAGATAT+GGG | + | chr8_2:6539273-6539292 | None:intergenic | 20.0% |
| !! | ATATTTGAAAACAACAGATA+TGG | + | chr8_2:6539274-6539293 | None:intergenic | 20.0% |
| !!! | ATATCTGTTGTTTTCAAATA+TGG | - | chr8_2:6539273-6539292 | Msa1230530:CDS | 20.0% |
| !!! | ATTTTATAAAAGGACAAAAC+AGG | - | chr8_2:6539459-6539478 | Msa1230530:CDS | 20.0% |
| !! | TTGTAAAGATTATCAATTGT+AGG | - | chr8_2:6538735-6538754 | Msa1230530:CDS | 20.0% |
| !! | TTCAAAATTGTACAAATATG+TGG | - | chr8_2:6539045-6539064 | Msa1230530:CDS | 20.0% |
| !!! | TTTTACAAAGTATGGTTTTT+CGG | - | chr8_2:6539120-6539139 | Msa1230530:CDS | 20.0% |
| !! | ATTGACAATGTCAAAATATT+AGG | + | chr8_2:6539178-6539197 | None:intergenic | 20.0% |
| !! | TATTTGAAAACAACAGATAT+GGG | + | chr8_2:6539273-6539292 | None:intergenic | 20.0% |
| !! | ATATTTGAAAACAACAGATA+TGG | + | chr8_2:6539274-6539293 | None:intergenic | 20.0% |
| !!! | ATATCTGTTGTTTTCAAATA+TGG | - | chr8_2:6539273-6539292 | Msa1230530:CDS | 20.0% |
| !!! | ATTTTATAAAAGGACAAAAC+AGG | - | chr8_2:6539459-6539478 | Msa1230530:CDS | 20.0% |
| !! | GAAAACTTTTATAATTGCTG+TGG | + | chr8_2:6538480-6538499 | None:intergenic | 25.0% |
| !!! | TACTGAAGTTTTGAGTAAAT+GGG | - | chr8_2:6538589-6538608 | Msa1230530:CDS | 25.0% |
| ! | AGAAGATGGAATATATAAGT+AGG | - | chr8_2:6539005-6539024 | Msa1230530:CDS | 25.0% |
| ! | ATGGAATATATAAGTAGGAT+TGG | - | chr8_2:6539010-6539029 | Msa1230530:CDS | 25.0% |
| ! | TGGAATATATAAGTAGGATT+GGG | - | chr8_2:6539011-6539030 | Msa1230530:CDS | 25.0% |
| !! | TTTGTACAATTTTGAATCCT+TGG | + | chr8_2:6539041-6539060 | None:intergenic | 25.0% |
| ! | AAATATGTGGTGACATTAAT+AGG | - | chr8_2:6539058-6539077 | Msa1230530:CDS | 25.0% |
| !! | GTGTTGAATTTTACAAAGTA+TGG | - | chr8_2:6539112-6539131 | Msa1230530:CDS | 25.0% |
| !! | TTTTCGGATGATGAAATATT+CGG | - | chr8_2:6539136-6539155 | Msa1230530:CDS | 25.0% |
| !! | ATGAAATATTCGGTCTTTTT+GGG | - | chr8_2:6539146-6539165 | Msa1230530:CDS | 25.0% |
| ! | TTTGACATTGTCAATTGATA+AGG | - | chr8_2:6539183-6539202 | Msa1230530:CDS | 25.0% |
| !! | GAAAACTTTTATAATTGCTG+TGG | + | chr8_2:6538480-6538499 | None:intergenic | 25.0% |
| !!! | TACTGAAGTTTTGAGTAAAT+GGG | - | chr8_2:6538589-6538608 | Msa1230530:CDS | 25.0% |
| ! | AGAAGATGGAATATATAAGT+AGG | - | chr8_2:6539005-6539024 | Msa1230530:CDS | 25.0% |
| ! | ATGGAATATATAAGTAGGAT+TGG | - | chr8_2:6539010-6539029 | Msa1230530:CDS | 25.0% |
| ! | TGGAATATATAAGTAGGATT+GGG | - | chr8_2:6539011-6539030 | Msa1230530:CDS | 25.0% |
| !! | TTTGTACAATTTTGAATCCT+TGG | + | chr8_2:6539041-6539060 | None:intergenic | 25.0% |
| ! | AAATATGTGGTGACATTAAT+AGG | - | chr8_2:6539058-6539077 | Msa1230530:CDS | 25.0% |
| !! | GTGTTGAATTTTACAAAGTA+TGG | - | chr8_2:6539112-6539131 | Msa1230530:CDS | 25.0% |
| !! | TTTTCGGATGATGAAATATT+CGG | - | chr8_2:6539136-6539155 | Msa1230530:CDS | 25.0% |
| !! | ATGAAATATTCGGTCTTTTT+GGG | - | chr8_2:6539146-6539165 | Msa1230530:CDS | 25.0% |
| ! | TTTGACATTGTCAATTGATA+AGG | - | chr8_2:6539183-6539202 | Msa1230530:CDS | 25.0% |
| ATGCTTCGATTTCTTTCAAT+TGG | - | chr8_2:6538425-6538444 | Msa1230530:CDS | 30.0% | |
| TGCTTCGATTTCTTTCAATT+GGG | - | chr8_2:6538426-6538445 | Msa1230530:CDS | 30.0% | |
| TGCAAAATGTTGAAGACAAA+TGG | - | chr8_2:6538558-6538577 | Msa1230530:CDS | 30.0% | |
| AAATGTTGAAGACAAATGGA+AGG | - | chr8_2:6538562-6538581 | Msa1230530:CDS | 30.0% | |
| !!! | CTACTGAAGTTTTGAGTAAA+TGG | - | chr8_2:6538588-6538607 | Msa1230530:CDS | 30.0% |
| !!! | ACTGAAGTTTTGAGTAAATG+GGG | - | chr8_2:6538590-6538609 | Msa1230530:CDS | 30.0% |
| ! | TTTTAGTCAAATCGTCATCA+CGG | + | chr8_2:6538619-6538638 | None:intergenic | 30.0% |
| TATGTCATTGTTTGAGTCAA+AGG | - | chr8_2:6538814-6538833 | Msa1230530:CDS | 30.0% | |
| ! | TATTTTCACACAGCAATGAA+GGG | + | chr8_2:6538868-6538887 | None:intergenic | 30.0% |
| ! | TTATTTTCACACAGCAATGA+AGG | + | chr8_2:6538869-6538888 | None:intergenic | 30.0% |
| AAGAGTTAGGTATACCAAAA+AGG | - | chr8_2:6538921-6538940 | Msa1230530:CDS | 30.0% | |
| AGAGTTAGGTATACCAAAAA+GGG | - | chr8_2:6538922-6538941 | Msa1230530:CDS | 30.0% | |
| GAAGTTCTTGAAATAACAGT+CGG | + | chr8_2:6538974-6538993 | None:intergenic | 30.0% | |
| ! | GATGAAATATTCGGTCTTTT+TGG | - | chr8_2:6539145-6539164 | Msa1230530:CDS | 30.0% |
| TGTCAATTGATAAGGTTCAA+AGG | - | chr8_2:6539191-6539210 | Msa1230530:CDS | 30.0% | |
| ! | AGGAACATGACTTTCATTTT+AGG | - | chr8_2:6539211-6539230 | Msa1230530:CDS | 30.0% |
| !!! | ATTGAGGGTGTTTTCATATT+AGG | + | chr8_2:6539352-6539371 | None:intergenic | 30.0% |
| ATGCTTCGATTTCTTTCAAT+TGG | - | chr8_2:6538425-6538444 | Msa1230530:CDS | 30.0% | |
| TGCTTCGATTTCTTTCAATT+GGG | - | chr8_2:6538426-6538445 | Msa1230530:CDS | 30.0% | |
| TGCAAAATGTTGAAGACAAA+TGG | - | chr8_2:6538558-6538577 | Msa1230530:CDS | 30.0% | |
| AAATGTTGAAGACAAATGGA+AGG | - | chr8_2:6538562-6538581 | Msa1230530:CDS | 30.0% | |
| !!! | CTACTGAAGTTTTGAGTAAA+TGG | - | chr8_2:6538588-6538607 | Msa1230530:CDS | 30.0% |
| !!! | ACTGAAGTTTTGAGTAAATG+GGG | - | chr8_2:6538590-6538609 | Msa1230530:CDS | 30.0% |
| ! | TTTTAGTCAAATCGTCATCA+CGG | + | chr8_2:6538619-6538638 | None:intergenic | 30.0% |
| TATGTCATTGTTTGAGTCAA+AGG | - | chr8_2:6538814-6538833 | Msa1230530:CDS | 30.0% | |
| ! | TATTTTCACACAGCAATGAA+GGG | + | chr8_2:6538868-6538887 | None:intergenic | 30.0% |
| ! | TTATTTTCACACAGCAATGA+AGG | + | chr8_2:6538869-6538888 | None:intergenic | 30.0% |
| AAGAGTTAGGTATACCAAAA+AGG | - | chr8_2:6538921-6538940 | Msa1230530:CDS | 30.0% | |
| AGAGTTAGGTATACCAAAAA+GGG | - | chr8_2:6538922-6538941 | Msa1230530:CDS | 30.0% | |
| GAAGTTCTTGAAATAACAGT+CGG | + | chr8_2:6538974-6538993 | None:intergenic | 30.0% | |
| ! | GATGAAATATTCGGTCTTTT+TGG | - | chr8_2:6539145-6539164 | Msa1230530:CDS | 30.0% |
| TGTCAATTGATAAGGTTCAA+AGG | - | chr8_2:6539191-6539210 | Msa1230530:CDS | 30.0% | |
| ! | AGGAACATGACTTTCATTTT+AGG | - | chr8_2:6539211-6539230 | Msa1230530:CDS | 30.0% |
| !!! | ATTGAGGGTGTTTTCATATT+AGG | + | chr8_2:6539352-6539371 | None:intergenic | 30.0% |
| TTGCTGTGGTGAATGTAAAA+TGG | + | chr8_2:6538466-6538485 | None:intergenic | 35.0% | |
| ! | ATTCAACCTCATTTTGAGCT+GGG | + | chr8_2:6538538-6538557 | None:intergenic | 35.0% |
| ! | AATTCAACCTCATTTTGAGC+TGG | + | chr8_2:6538539-6538558 | None:intergenic | 35.0% |
| ! | TTGCTTAGTGATTTGGGTTT+AGG | - | chr8_2:6538701-6538720 | Msa1230530:CDS | 35.0% |
| TTAACCATAATTTCGACGAG+AGG | - | chr8_2:6538780-6538799 | Msa1230530:CDS | 35.0% | |
| GTCAAAGGAAATGCTTCATA+AGG | - | chr8_2:6538829-6538848 | Msa1230530:CDS | 35.0% | |
| ! | ATTTGAACCAAGTCCCTTTT+TGG | + | chr8_2:6538938-6538957 | None:intergenic | 35.0% |
| ! | AGCAATGAAGGTACAGAATA+TGG | - | chr8_2:6539324-6539343 | Msa1230530:CDS | 35.0% |
| !! | CTCAATGCTCTAAGTATTGA+GGG | + | chr8_2:6539367-6539386 | None:intergenic | 35.0% |
| CATCAGCAATTTCCTTATCA+TGG | + | chr8_2:6539429-6539448 | None:intergenic | 35.0% | |
| GGAAATTGCTGATGAGTTAA+TGG | - | chr8_2:6539435-6539454 | Msa1230530:CDS | 35.0% | |
| AGAGATTAGCAGTTTCATCA+AGG | - | chr8_2:6539485-6539504 | Msa1230530:CDS | 35.0% | |
| TAGCAGTTTCATCAAGGAAT+TGG | - | chr8_2:6539491-6539510 | Msa1230530:CDS | 35.0% | |
| TTGCTGTGGTGAATGTAAAA+TGG | + | chr8_2:6538466-6538485 | None:intergenic | 35.0% | |
| ! | ATTCAACCTCATTTTGAGCT+GGG | + | chr8_2:6538538-6538557 | None:intergenic | 35.0% |
| ! | AATTCAACCTCATTTTGAGC+TGG | + | chr8_2:6538539-6538558 | None:intergenic | 35.0% |
| ! | TTGCTTAGTGATTTGGGTTT+AGG | - | chr8_2:6538701-6538720 | Msa1230530:CDS | 35.0% |
| TTAACCATAATTTCGACGAG+AGG | - | chr8_2:6538780-6538799 | Msa1230530:CDS | 35.0% | |
| GTCAAAGGAAATGCTTCATA+AGG | - | chr8_2:6538829-6538848 | Msa1230530:CDS | 35.0% | |
| ! | ATTTGAACCAAGTCCCTTTT+TGG | + | chr8_2:6538938-6538957 | None:intergenic | 35.0% |
| ! | AGCAATGAAGGTACAGAATA+TGG | - | chr8_2:6539324-6539343 | Msa1230530:CDS | 35.0% |
| !! | CTCAATGCTCTAAGTATTGA+GGG | + | chr8_2:6539367-6539386 | None:intergenic | 35.0% |
| CATCAGCAATTTCCTTATCA+TGG | + | chr8_2:6539429-6539448 | None:intergenic | 35.0% | |
| GGAAATTGCTGATGAGTTAA+TGG | - | chr8_2:6539435-6539454 | Msa1230530:CDS | 35.0% | |
| AGAGATTAGCAGTTTCATCA+AGG | - | chr8_2:6539485-6539504 | Msa1230530:CDS | 35.0% | |
| TAGCAGTTTCATCAAGGAAT+TGG | - | chr8_2:6539491-6539510 | Msa1230530:CDS | 35.0% | |
| ACTTCGCTTGCTTAGTGATT+TGG | - | chr8_2:6538694-6538713 | Msa1230530:CDS | 40.0% | |
| CTTCGCTTGCTTAGTGATTT+GGG | - | chr8_2:6538695-6538714 | Msa1230530:CDS | 40.0% | |
| ! | ATTGTAGGCCTCGATTTTTC+AGG | - | chr8_2:6538750-6538769 | Msa1230530:CDS | 40.0% |
| CAATGAAGGGTTTCTTGCAA+TGG | + | chr8_2:6538855-6538874 | None:intergenic | 40.0% | |
| GTTGCACAGTATGAAGAGTT+AGG | - | chr8_2:6538908-6538927 | Msa1230530:CDS | 40.0% | |
| AGGTATACCAAAAAGGGACT+TGG | - | chr8_2:6538928-6538947 | Msa1230530:CDS | 40.0% | |
| TTCCTTTGACGATGAGAAGA+TGG | - | chr8_2:6538991-6539010 | Msa1230530:CDS | 40.0% | |
| TTCCATCTTCTCATCGTCAA+AGG | + | chr8_2:6538996-6539015 | None:intergenic | 40.0% | |
| ATTAATAGGCATCTCTCGTG+TGG | - | chr8_2:6539072-6539091 | Msa1230530:CDS | 40.0% | |
| TGTGGAAACAATTCGCGAAA+AGG | - | chr8_2:6539090-6539109 | Msa1230530:CDS | 40.0% | |
| !! | TTCATTGCTAGAAGCACTCT+TGG | + | chr8_2:6539313-6539332 | None:intergenic | 40.0% |
| !! | AAGAGTGCTTCTAGCAATGA+AGG | - | chr8_2:6539312-6539331 | Msa1230530:CDS | 40.0% |
| ! | CCTCAATGCTCTAAGTATTG+AGG | + | chr8_2:6539368-6539387 | None:intergenic | 40.0% |
| !! | CCTCAATACTTAGAGCATTG+AGG | - | chr8_2:6539365-6539384 | Msa1230530:CDS | 40.0% |
| CGTATTGAAAAACCTCTCCT+CGG | + | chr8_2:6539395-6539414 | None:intergenic | 40.0% | |
| GTTTGTCAGATGCCATGATA+AGG | - | chr8_2:6539414-6539433 | Msa1230530:CDS | 40.0% | |
| TCAAGGAATTGGACTACTAG+AGG | - | chr8_2:6539502-6539521 | Msa1230530:CDS | 40.0% | |
| ACTTCGCTTGCTTAGTGATT+TGG | - | chr8_2:6538694-6538713 | Msa1230530:CDS | 40.0% | |
| CTTCGCTTGCTTAGTGATTT+GGG | - | chr8_2:6538695-6538714 | Msa1230530:CDS | 40.0% | |
| ! | ATTGTAGGCCTCGATTTTTC+AGG | - | chr8_2:6538750-6538769 | Msa1230530:CDS | 40.0% |
| CAATGAAGGGTTTCTTGCAA+TGG | + | chr8_2:6538855-6538874 | None:intergenic | 40.0% | |
| GTTGCACAGTATGAAGAGTT+AGG | - | chr8_2:6538908-6538927 | Msa1230530:CDS | 40.0% | |
| AGGTATACCAAAAAGGGACT+TGG | - | chr8_2:6538928-6538947 | Msa1230530:CDS | 40.0% | |
| TTCCTTTGACGATGAGAAGA+TGG | - | chr8_2:6538991-6539010 | Msa1230530:CDS | 40.0% | |
| TTCCATCTTCTCATCGTCAA+AGG | + | chr8_2:6538996-6539015 | None:intergenic | 40.0% | |
| ATTAATAGGCATCTCTCGTG+TGG | - | chr8_2:6539072-6539091 | Msa1230530:CDS | 40.0% | |
| TGTGGAAACAATTCGCGAAA+AGG | - | chr8_2:6539090-6539109 | Msa1230530:CDS | 40.0% | |
| !! | TTCATTGCTAGAAGCACTCT+TGG | + | chr8_2:6539313-6539332 | None:intergenic | 40.0% |
| !! | AAGAGTGCTTCTAGCAATGA+AGG | - | chr8_2:6539312-6539331 | Msa1230530:CDS | 40.0% |
| ! | CCTCAATGCTCTAAGTATTG+AGG | + | chr8_2:6539368-6539387 | None:intergenic | 40.0% |
| !! | CCTCAATACTTAGAGCATTG+AGG | - | chr8_2:6539365-6539384 | Msa1230530:CDS | 40.0% |
| CGTATTGAAAAACCTCTCCT+CGG | + | chr8_2:6539395-6539414 | None:intergenic | 40.0% | |
| GTTTGTCAGATGCCATGATA+AGG | - | chr8_2:6539414-6539433 | Msa1230530:CDS | 40.0% | |
| TCAAGGAATTGGACTACTAG+AGG | - | chr8_2:6539502-6539521 | Msa1230530:CDS | 40.0% | |
| ACTTTCGTCGAATAGGTAGC+GGG | + | chr8_2:6538515-6538534 | None:intergenic | 45.0% | |
| GACTTTCGTCGAATAGGTAG+CGG | + | chr8_2:6538516-6538535 | None:intergenic | 45.0% | |
| GAAAGTCCCAGCTCAAAATG+AGG | - | chr8_2:6538529-6538548 | Msa1230530:CDS | 45.0% | |
| AGTTTCGACTGAACCTGAGA+AGG | + | chr8_2:6538677-6538696 | None:intergenic | 45.0% | |
| AGTCGAGTCCTGAAAAATCG+AGG | + | chr8_2:6538761-6538780 | None:intergenic | 45.0% | |
| CAAGCCTCTCGTCGAAATTA+TGG | + | chr8_2:6538787-6538806 | None:intergenic | 45.0% | |
| AAGTAGGATTGGGCTTTCCA+AGG | - | chr8_2:6539021-6539040 | Msa1230530:CDS | 45.0% | |
| ACTTTCGTCGAATAGGTAGC+GGG | + | chr8_2:6538515-6538534 | None:intergenic | 45.0% | |
| GACTTTCGTCGAATAGGTAG+CGG | + | chr8_2:6538516-6538535 | None:intergenic | 45.0% | |
| GAAAGTCCCAGCTCAAAATG+AGG | - | chr8_2:6538529-6538548 | Msa1230530:CDS | 45.0% | |
| AGTTTCGACTGAACCTGAGA+AGG | + | chr8_2:6538677-6538696 | None:intergenic | 45.0% | |
| AGTCGAGTCCTGAAAAATCG+AGG | + | chr8_2:6538761-6538780 | None:intergenic | 45.0% | |
| CAAGCCTCTCGTCGAAATTA+TGG | + | chr8_2:6538787-6538806 | None:intergenic | 45.0% | |
| AAGTAGGATTGGGCTTTCCA+AGG | - | chr8_2:6539021-6539040 | Msa1230530:CDS | 45.0% | |
| !! | AGGTAGCGGGCGTAAAAACT+GGG | + | chr8_2:6538502-6538521 | None:intergenic | 50.0% |
| !! | TAGGTAGCGGGCGTAAAAAC+TGG | + | chr8_2:6538503-6538522 | None:intergenic | 50.0% |
| AGCTGGGACTTTCGTCGAAT+AGG | + | chr8_2:6538522-6538541 | None:intergenic | 50.0% | |
| !! | TAGAGCATTGAGGATGTCCG+AGG | - | chr8_2:6539375-6539394 | Msa1230530:CDS | 50.0% |
| !! | AGGTAGCGGGCGTAAAAACT+GGG | + | chr8_2:6538502-6538521 | None:intergenic | 50.0% |
| !! | TAGGTAGCGGGCGTAAAAAC+TGG | + | chr8_2:6538503-6538522 | None:intergenic | 50.0% |
| AGCTGGGACTTTCGTCGAAT+AGG | + | chr8_2:6538522-6538541 | None:intergenic | 50.0% | |
| !! | TAGAGCATTGAGGATGTCCG+AGG | - | chr8_2:6539375-6539394 | Msa1230530:CDS | 50.0% |
| TTGCCCGTCTTTGCGCAATG+CGG | - | chr8_2:6538649-6538668 | Msa1230530:CDS | 55.0% | |
| GATCCGCATTGCGCAAAGAC+GGG | + | chr8_2:6538655-6538674 | None:intergenic | 55.0% | |
| GGATCCGCATTGCGCAAAGA+CGG | + | chr8_2:6538656-6538675 | None:intergenic | 55.0% | |
| CATTGAGGATGTCCGAGGAG+AGG | - | chr8_2:6539380-6539399 | Msa1230530:CDS | 55.0% | |
| TTGCCCGTCTTTGCGCAATG+CGG | - | chr8_2:6538649-6538668 | Msa1230530:CDS | 55.0% | |
| GATCCGCATTGCGCAAAGAC+GGG | + | chr8_2:6538655-6538674 | None:intergenic | 55.0% | |
| GGATCCGCATTGCGCAAAGA+CGG | + | chr8_2:6538656-6538675 | None:intergenic | 55.0% | |
| CATTGAGGATGTCCGAGGAG+AGG | - | chr8_2:6539380-6539399 | Msa1230530:CDS | 55.0% | |
| GCGCAATGCGGATCCTTCTC+AGG | - | chr8_2:6538661-6538680 | Msa1230530:CDS | 60.0% | |
| GCGCAATGCGGATCCTTCTC+AGG | - | chr8_2:6538661-6538680 | Msa1230530:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 6538425 | 6539537 | 6538425 | ID=Msa1230530;Name=Msa1230530 |
| chr8_2 | mRNA | 6538425 | 6539537 | 6538425 | ID=Msa1230530-mRNA-1;Parent=Msa1230530;Name=Msa1230530-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|370 |
| chr8_2 | exon | 6538425 | 6539537 | 6538425 | ID=Msa1230530-mRNA-1:exon:2439;Parent=Msa1230530-mRNA-1 |
| chr8_2 | CDS | 6538425 | 6539537 | 6538425 | ID=Msa1230530-mRNA-1:cds;Parent=Msa1230530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
