Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1232230 | XP_013444240.1 | 96.752 | 431 | 13 | 1 | 1 | 431 | 1 | 430 | 0.0 | 866 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1232230 | sp|Q8S3D2|BH087_ARATH | 47.576 | 330 | 131 | 14 | 110 | 427 | 72 | 371 | 5.75e-69 | 226 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1232230 | A0A072TLG8 | 96.752 | 431 | 13 | 1 | 1 | 431 | 1 | 430 | 0.0 | 866 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1232230 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1232230 | MtrunA17_Chr8g0341421 | 96.752 | 431 | 13 | 1 | 1 | 431 | 1 | 430 | 0.0 | 866 |
| Msa1232230 | MtrunA17_Chr2g0330641 | 49.458 | 461 | 111 | 21 | 1 | 419 | 1 | 381 | 1.60e-98 | 300 |
| Msa1232230 | MtrunA17_Chr8g0384141 | 64.948 | 97 | 28 | 2 | 298 | 393 | 87 | 178 | 3.79e-36 | 134 |
| Msa1232230 | MtrunA17_Chr3g0134001 | 46.528 | 144 | 59 | 2 | 271 | 400 | 103 | 242 | 3.88e-36 | 134 |
| Msa1232230 | MtrunA17_Chr8g0375121 | 52.239 | 134 | 50 | 2 | 272 | 395 | 69 | 198 | 1.08e-28 | 113 |
| Msa1232230 | MtrunA17_Chr5g0402161 | 62.626 | 99 | 33 | 1 | 297 | 395 | 109 | 203 | 7.98e-28 | 110 |
| Msa1232230 | MtrunA17_Chr7g0243041 | 56.923 | 65 | 28 | 0 | 335 | 399 | 32 | 96 | 8.03e-20 | 85.9 |
| Msa1232230 | MtrunA17_Chr5g0435021 | 60.714 | 56 | 22 | 0 | 336 | 391 | 225 | 280 | 5.63e-17 | 81.3 |
| Msa1232230 | MtrunA17_Chr1g0152651 | 60.714 | 56 | 22 | 0 | 338 | 393 | 283 | 338 | 5.75e-17 | 82.0 |
| Msa1232230 | MtrunA17_Chr1g0207301 | 48.000 | 75 | 39 | 0 | 319 | 393 | 278 | 352 | 9.93e-16 | 78.6 |
| Msa1232230 | MtrunA17_Chr1g0179061 | 48.649 | 74 | 36 | 1 | 321 | 394 | 164 | 235 | 1.86e-15 | 75.9 |
| Msa1232230 | MtrunA17_Chr5g0393721 | 53.448 | 58 | 27 | 0 | 336 | 393 | 231 | 288 | 2.28e-15 | 77.0 |
| Msa1232230 | MtrunA17_Chr1g0207311 | 53.448 | 58 | 27 | 0 | 336 | 393 | 203 | 260 | 5.53e-15 | 75.1 |
| Msa1232230 | MtrunA17_Chr3g0134741 | 49.231 | 65 | 33 | 0 | 329 | 393 | 229 | 293 | 1.64e-14 | 74.3 |
| Msa1232230 | MtrunA17_Chr2g0311101 | 47.887 | 71 | 33 | 1 | 324 | 394 | 168 | 234 | 1.17e-13 | 71.6 |
| Msa1232230 | MtrunA17_Chr4g0074161 | 55.357 | 56 | 25 | 0 | 336 | 391 | 213 | 268 | 1.27e-13 | 72.4 |
| Msa1232230 | MtrunA17_Chr1g0190731 | 55.357 | 56 | 25 | 0 | 336 | 391 | 200 | 255 | 2.14e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1232230 | AT3G21330.1 | 47.576 | 330 | 131 | 14 | 110 | 427 | 72 | 371 | 5.84e-70 | 226 |
| Msa1232230 | AT4G00120.1 | 54.386 | 114 | 45 | 3 | 301 | 413 | 88 | 195 | 3.00e-31 | 119 |
| Msa1232230 | AT3G50330.1 | 62.105 | 95 | 32 | 1 | 298 | 392 | 92 | 182 | 1.51e-25 | 104 |
| Msa1232230 | AT5G09750.1 | 65.263 | 95 | 27 | 2 | 298 | 391 | 92 | 181 | 2.01e-25 | 103 |
| Msa1232230 | AT5G67060.2 | 61.053 | 95 | 33 | 1 | 298 | 392 | 83 | 173 | 2.28e-25 | 103 |
| Msa1232230 | AT5G67060.1 | 61.053 | 95 | 33 | 1 | 298 | 392 | 95 | 185 | 3.36e-25 | 103 |
| Msa1232230 | AT5G01305.1 | 59.677 | 62 | 25 | 0 | 327 | 388 | 35 | 96 | 1.56e-19 | 85.9 |
| Msa1232230 | AT5G43175.1 | 47.059 | 68 | 36 | 0 | 326 | 393 | 129 | 196 | 5.95e-16 | 77.0 |
| Msa1232230 | AT5G37800.1 | 53.846 | 65 | 30 | 0 | 327 | 391 | 199 | 263 | 7.00e-16 | 78.6 |
| Msa1232230 | AT1G66470.1 | 50.000 | 68 | 34 | 0 | 324 | 391 | 190 | 257 | 9.08e-16 | 78.2 |
| Msa1232230 | AT4G33880.1 | 51.562 | 64 | 31 | 0 | 330 | 393 | 267 | 330 | 1.19e-15 | 78.6 |
| Msa1232230 | AT2G14760.1 | 51.562 | 64 | 31 | 0 | 330 | 393 | 238 | 301 | 1.57e-15 | 77.8 |
| Msa1232230 | AT4G30980.1 | 49.367 | 79 | 37 | 2 | 325 | 400 | 125 | 203 | 4.82e-15 | 75.9 |
| Msa1232230 | AT2G24260.2 | 57.143 | 56 | 24 | 0 | 336 | 391 | 42 | 97 | 9.00e-15 | 74.3 |
| Msa1232230 | AT4G30980.2 | 49.367 | 79 | 37 | 2 | 325 | 400 | 173 | 251 | 1.01e-14 | 75.5 |
| Msa1232230 | AT1G27740.1 | 47.059 | 68 | 36 | 0 | 326 | 393 | 164 | 231 | 1.43e-14 | 73.9 |
| Msa1232230 | AT2G24260.1 | 57.143 | 56 | 24 | 0 | 336 | 391 | 145 | 200 | 2.23e-14 | 74.7 |
| Msa1232230 | AT5G58010.1 | 41.111 | 90 | 44 | 2 | 323 | 403 | 92 | 181 | 6.86e-14 | 72.4 |
| Msa1232230 | AT2G14760.3 | 42.857 | 77 | 31 | 1 | 330 | 393 | 238 | 314 | 1.99e-12 | 68.6 |
Find 64 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCTTGGTTTCTTGCATTT+TGG | 0.110710 | 8_2:+8527052 | None:intergenic |
| TTCATTTGTGCTATTGCTTC+TGG | 0.163364 | 8_2:+8526941 | None:intergenic |
| AAAGAATAAGTGAAAGAATT+AGG | 0.176959 | 8_2:-8526778 | Msa1232230:CDS |
| GCATTTAGACCAGTGAATTT+TGG | 0.189702 | 8_2:-8526896 | Msa1232230:CDS |
| CAACATATTGATGATGAATT+TGG | 0.233252 | 8_2:+8526989 | None:intergenic |
| TATCCATGGATGGTCTAAAT+TGG | 0.250098 | 8_2:-8527828 | None:intergenic |
| TGAAATGATTGAGGTATTAA+AGG | 0.270091 | 8_2:+8527574 | None:intergenic |
| CTGTTGCTGCAAGGCATAGA+AGG | 0.293794 | 8_2:-8526802 | Msa1232230:CDS |
| GTTAAGGCACTTGAAAGTTT+AGG | 0.322532 | 8_2:-8526662 | Msa1232230:CDS |
| AAGAATAAGTGAAAGAATTA+GGG | 0.351830 | 8_2:-8526777 | Msa1232230:CDS |
| TGCCTTGCAGCAACAGTTTG+TGG | 0.383846 | 8_2:+8526809 | None:intergenic |
| CTTCTGATTGAAGGTGTGTC+TGG | 0.384028 | 8_2:+8527256 | None:intergenic |
| GAGATGCATAAAGTTCAAAT+TGG | 0.386265 | 8_2:-8527706 | Msa1232230:CDS |
| TGTACCTGGTGGAAGCAAAA+TGG | 0.387485 | 8_2:-8526741 | Msa1232230:CDS |
| ATCTTTACATTCTTCCTCTT+AGG | 0.399260 | 8_2:+8526842 | None:intergenic |
| TGGTGGGCCATGTTGAAATC+TGG | 0.417693 | 8_2:+8527517 | None:intergenic |
| AAAGAGAAAGCAATACTAGT+TGG | 0.418809 | 8_2:+8526611 | None:intergenic |
| GAATGAGGATTATGATTACT+AGG | 0.423589 | 8_2:+8526560 | None:intergenic |
| CATAATTCTTCACCTGTTGA+AGG | 0.428854 | 8_2:-8527103 | Msa1232230:CDS |
| TGGTTGTTGAAAATTGATAT+TGG | 0.428990 | 8_2:+8527009 | None:intergenic |
| CAAGGTCCGTTATCACATCT+TGG | 0.432948 | 8_2:+8527037 | None:intergenic |
| ATCATTTGCATGGGAAAAGA+AGG | 0.446256 | 8_2:+8526584 | None:intergenic |
| ATCCATGGATGGTCTAAATT+GGG | 0.452946 | 8_2:-8527827 | None:intergenic |
| TAAAGGTTCTTCTCTCCAGC+TGG | 0.468965 | 8_2:+8527591 | None:intergenic |
| AGTCTAAAACCACCTTCAAC+AGG | 0.475064 | 8_2:+8527091 | None:intergenic |
| AAATCTGGCATAATGTTGTA+AGG | 0.495981 | 8_2:+8527532 | None:intergenic |
| TAATCATAATCCTCATTCAC+AGG | 0.499166 | 8_2:-8526555 | Msa1232230:CDS |
| AGGTAACAAAGTTAATGCTA+TGG | 0.507469 | 8_2:-8526642 | Msa1232230:CDS |
| TGTTGTGAAAGATTTGTGTT+TGG | 0.510255 | 8_2:+8527652 | None:intergenic |
| TCTGTTGAAAATGATAATGA+TGG | 0.512969 | 8_2:-8527421 | Msa1232230:CDS |
| GTAAGGTCTACTGTCTGAAA+AGG | 0.516969 | 8_2:+8527549 | None:intergenic |
| AGAAGCAATAGCACAAATGA+AGG | 0.517584 | 8_2:-8526939 | Msa1232230:CDS |
| TGTTGAGTACTCCACAAGAT+TGG | 0.521264 | 8_2:+8527778 | None:intergenic |
| GCACTGACACTTCTGATTGA+AGG | 0.521990 | 8_2:+8527247 | None:intergenic |
| AATCAAAAGCTGGATCCAGC+TGG | 0.531706 | 8_2:-8527606 | Msa1232230:CDS |
| TCTTGTCAACCCTGTGAATG+AGG | 0.533569 | 8_2:+8526545 | None:intergenic |
| ATTACTAGGGATCATTTGCA+TGG | 0.537756 | 8_2:+8526574 | None:intergenic |
| ATGAAAGTGAAATCAAAAGC+TGG | 0.539625 | 8_2:-8527616 | Msa1232230:CDS |
| ATCCCAATTTAGACCATCCA+TGG | 0.539878 | 8_2:+8527825 | None:intergenic |
| GTTTCATCAAATTCATTGAG+TGG | 0.542529 | 8_2:+8527190 | None:intergenic |
| TCATCCATTCCAAAATTCAC+TGG | 0.545940 | 8_2:+8526887 | None:intergenic |
| GAAAAGGACTGAAATGATTG+AGG | 0.553231 | 8_2:+8527565 | None:intergenic |
| AGTAACACAGCAACTTCCTC+AGG | 0.560472 | 8_2:-8527346 | Msa1232230:CDS |
| AAGAGAACACACCAATCTTG+TGG | 0.562304 | 8_2:-8527789 | Msa1232230:CDS |
| GTCAGTGCTACAGATGGTAC+CGG | 0.569310 | 8_2:-8527232 | Msa1232230:CDS |
| AGTACTCAACACTTTGAAGA+TGG | 0.582208 | 8_2:-8527766 | Msa1232230:CDS |
| AATTCTTCACCTGTTGAAGG+TGG | 0.582439 | 8_2:-8527100 | Msa1232230:CDS |
| AATGAGGATTATGATTACTA+GGG | 0.585755 | 8_2:+8526561 | None:intergenic |
| AAGAAACCAAGATGTGATAA+CGG | 0.585871 | 8_2:-8527043 | Msa1232230:CDS |
| CACTGCTTCAATGCTTGATG+AGG | 0.590511 | 8_2:-8526717 | Msa1232230:CDS |
| TGTTGCTGCAAGGCATAGAA+GGG | 0.592230 | 8_2:-8526801 | Msa1232230:CDS |
| AAATTGATATTGGTTGAACA+AGG | 0.601710 | 8_2:+8527019 | None:intergenic |
| TGGATGGATGTATTGATCTG+AGG | 0.615074 | 8_2:+8527153 | None:intergenic |
| ATCCACAAACTGTTGCTGCA+AGG | 0.616303 | 8_2:-8526811 | Msa1232230:CDS |
| GTATGTGTCTGTGTTTGTGT+CGG | 0.621077 | 8_2:+8527280 | None:intergenic |
| TCATTTGCATGGGAAAAGAA+GGG | 0.621230 | 8_2:+8526585 | None:intergenic |
| ATTAGAGTCATATCCATGGA+TGG | 0.621281 | 8_2:-8527838 | None:intergenic |
| TTACTAGGGATCATTTGCAT+GGG | 0.622466 | 8_2:+8526575 | None:intergenic |
| ATGGATGGTCTAAATTGGGA+TGG | 0.624739 | 8_2:-8527823 | Msa1232230:CDS |
| AGAAGTGTCAGTGCTACAGA+TGG | 0.638623 | 8_2:-8527238 | Msa1232230:CDS |
| AATCATAATCCTCATTCACA+GGG | 0.648589 | 8_2:-8526554 | Msa1232230:CDS |
| CATTATGCCAGATTTCAACA+TGG | 0.655208 | 8_2:-8527524 | Msa1232230:CDS |
| ATTACTATCAGTTTCACCTG+AGG | 0.681052 | 8_2:+8527330 | None:intergenic |
| TTGCAAAAGATTGTACCTGG+TGG | 0.687101 | 8_2:-8526752 | Msa1232230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAATAAGTGAAAGAATT+AGG | - | chr8_2:8527595-8527614 | Msa1232230:CDS | 20.0% |
| !! | AAGAATAAGTGAAAGAATTA+GGG | - | chr8_2:8527596-8527615 | Msa1232230:CDS | 20.0% |
| !!! | CAAATTATCTCAAGTTTTTA+AGG | - | chr8_2:8527682-8527701 | Msa1232230:CDS | 20.0% |
| !! | AAAGAATAAGTGAAAGAATT+AGG | - | chr8_2:8527595-8527614 | Msa1232230:CDS | 20.0% |
| !! | AAGAATAAGTGAAAGAATTA+GGG | - | chr8_2:8527596-8527615 | Msa1232230:CDS | 20.0% |
| !!! | CAAATTATCTCAAGTTTTTA+AGG | - | chr8_2:8527682-8527701 | Msa1232230:CDS | 20.0% |
| !! | TGAAATGATTGAGGTATTAA+AGG | + | chr8_2:8526802-8526821 | None:intergenic | 25.0% |
| !! | TCTGTTGAAAATGATAATGA+TGG | - | chr8_2:8526952-8526971 | Msa1232230:CDS | 25.0% |
| !! | AAATTGATATTGGTTGAACA+AGG | + | chr8_2:8527357-8527376 | None:intergenic | 25.0% |
| ! | TGGTTGTTGAAAATTGATAT+TGG | + | chr8_2:8527367-8527386 | None:intergenic | 25.0% |
| !!! | CAACATATTGATGATGAATT+TGG | + | chr8_2:8527387-8527406 | None:intergenic | 25.0% |
| ! | TAATTGAAAAAAAGCCTAAG+AGG | - | chr8_2:8527517-8527536 | Msa1232230:CDS | 25.0% |
| ! | AATGAGGATTATGATTACTA+GGG | + | chr8_2:8527815-8527834 | None:intergenic | 25.0% |
| !! | TGAAATGATTGAGGTATTAA+AGG | + | chr8_2:8526802-8526821 | None:intergenic | 25.0% |
| !! | TCTGTTGAAAATGATAATGA+TGG | - | chr8_2:8526952-8526971 | Msa1232230:CDS | 25.0% |
| !! | AAATTGATATTGGTTGAACA+AGG | + | chr8_2:8527357-8527376 | None:intergenic | 25.0% |
| ! | TGGTTGTTGAAAATTGATAT+TGG | + | chr8_2:8527367-8527386 | None:intergenic | 25.0% |
| !!! | CAACATATTGATGATGAATT+TGG | + | chr8_2:8527387-8527406 | None:intergenic | 25.0% |
| ! | TAATTGAAAAAAAGCCTAAG+AGG | - | chr8_2:8527517-8527536 | Msa1232230:CDS | 25.0% |
| ! | AATGAGGATTATGATTACTA+GGG | + | chr8_2:8527815-8527834 | None:intergenic | 25.0% |
| GAGATGCATAAAGTTCAAAT+TGG | - | chr8_2:8526667-8526686 | Msa1232230:CDS | 30.0% | |
| TGTTGTGAAAGATTTGTGTT+TGG | + | chr8_2:8526724-8526743 | None:intergenic | 30.0% | |
| ATGAAAGTGAAATCAAAAGC+TGG | - | chr8_2:8526757-8526776 | Msa1232230:CDS | 30.0% | |
| AAATCTGGCATAATGTTGTA+AGG | + | chr8_2:8526844-8526863 | None:intergenic | 30.0% | |
| !! | AGTTGTTGAGTTTTTGTTGT+TGG | + | chr8_2:8526879-8526898 | None:intergenic | 30.0% |
| !! | TCTTTTGATTGTTTGCTTTC+AGG | - | chr8_2:8526907-8526926 | Msa1232230:CDS | 30.0% |
| TTTCTGACTGCAAAAACTTA+TGG | - | chr8_2:8526989-8527008 | Msa1232230:CDS | 30.0% | |
| !! | ACACTGAATGTTTTTGTTTC+CGG | + | chr8_2:8527163-8527182 | None:intergenic | 30.0% |
| GTTTCATCAAATTCATTGAG+TGG | + | chr8_2:8527186-8527205 | None:intergenic | 30.0% | |
| !! | ATTGTATTGCTTTTCTTGGA+TGG | + | chr8_2:8527239-8527258 | None:intergenic | 30.0% |
| !! | CTTGATTGTATTGCTTTTCT+TGG | + | chr8_2:8527243-8527262 | None:intergenic | 30.0% |
| AAGAAACCAAGATGTGATAA+CGG | - | chr8_2:8527330-8527349 | Msa1232230:CDS | 30.0% | |
| ATCTTTACATTCTTCCTCTT+AGG | + | chr8_2:8527534-8527553 | None:intergenic | 30.0% | |
| AGGTAACAAAGTTAATGCTA+TGG | - | chr8_2:8527731-8527750 | Msa1232230:CDS | 30.0% | |
| AAAGAGAAAGCAATACTAGT+TGG | + | chr8_2:8527765-8527784 | None:intergenic | 30.0% | |
| GAATGAGGATTATGATTACT+AGG | + | chr8_2:8527816-8527835 | None:intergenic | 30.0% | |
| TAATCATAATCCTCATTCAC+AGG | - | chr8_2:8527818-8527837 | Msa1232230:CDS | 30.0% | |
| AATCATAATCCTCATTCACA+GGG | - | chr8_2:8527819-8527838 | Msa1232230:CDS | 30.0% | |
| GAGATGCATAAAGTTCAAAT+TGG | - | chr8_2:8526667-8526686 | Msa1232230:CDS | 30.0% | |
| TGTTGTGAAAGATTTGTGTT+TGG | + | chr8_2:8526724-8526743 | None:intergenic | 30.0% | |
| ATGAAAGTGAAATCAAAAGC+TGG | - | chr8_2:8526757-8526776 | Msa1232230:CDS | 30.0% | |
| AAATCTGGCATAATGTTGTA+AGG | + | chr8_2:8526844-8526863 | None:intergenic | 30.0% | |
| !! | AGTTGTTGAGTTTTTGTTGT+TGG | + | chr8_2:8526879-8526898 | None:intergenic | 30.0% |
| !! | TCTTTTGATTGTTTGCTTTC+AGG | - | chr8_2:8526907-8526926 | Msa1232230:CDS | 30.0% |
| TTTCTGACTGCAAAAACTTA+TGG | - | chr8_2:8526989-8527008 | Msa1232230:CDS | 30.0% | |
| !! | ACACTGAATGTTTTTGTTTC+CGG | + | chr8_2:8527163-8527182 | None:intergenic | 30.0% |
| GTTTCATCAAATTCATTGAG+TGG | + | chr8_2:8527186-8527205 | None:intergenic | 30.0% | |
| !! | ATTGTATTGCTTTTCTTGGA+TGG | + | chr8_2:8527239-8527258 | None:intergenic | 30.0% |
| !! | CTTGATTGTATTGCTTTTCT+TGG | + | chr8_2:8527243-8527262 | None:intergenic | 30.0% |
| AAGAAACCAAGATGTGATAA+CGG | - | chr8_2:8527330-8527349 | Msa1232230:CDS | 30.0% | |
| ATCTTTACATTCTTCCTCTT+AGG | + | chr8_2:8527534-8527553 | None:intergenic | 30.0% | |
| AGGTAACAAAGTTAATGCTA+TGG | - | chr8_2:8527731-8527750 | Msa1232230:CDS | 30.0% | |
| AAAGAGAAAGCAATACTAGT+TGG | + | chr8_2:8527765-8527784 | None:intergenic | 30.0% | |
| GAATGAGGATTATGATTACT+AGG | + | chr8_2:8527816-8527835 | None:intergenic | 30.0% | |
| TAATCATAATCCTCATTCAC+AGG | - | chr8_2:8527818-8527837 | Msa1232230:CDS | 30.0% | |
| AATCATAATCCTCATTCACA+GGG | - | chr8_2:8527819-8527838 | Msa1232230:CDS | 30.0% | |
| ! | AGTACTCAACACTTTGAAGA+TGG | - | chr8_2:8526607-8526626 | Msa1232230:CDS | 35.0% |
| GAAAAGGACTGAAATGATTG+AGG | + | chr8_2:8526811-8526830 | None:intergenic | 35.0% | |
| CATTATGCCAGATTTCAACA+TGG | - | chr8_2:8526849-8526868 | Msa1232230:CDS | 35.0% | |
| !!! | GTTGAGTTTTTGTTGTTGGT+GGG | + | chr8_2:8526875-8526894 | None:intergenic | 35.0% |
| !!! | TGTTGAGTTTTTGTTGTTGG+TGG | + | chr8_2:8526876-8526895 | None:intergenic | 35.0% |
| ATTACTATCAGTTTCACCTG+AGG | + | chr8_2:8527046-8527065 | None:intergenic | 35.0% | |
| CATAATTCTTCACCTGTTGA+AGG | - | chr8_2:8527270-8527289 | Msa1232230:CDS | 35.0% | |
| ! | CATCTTGGTTTCTTGCATTT+TGG | + | chr8_2:8527324-8527343 | None:intergenic | 35.0% |
| ! | TTCATTTGTGCTATTGCTTC+TGG | + | chr8_2:8527435-8527454 | None:intergenic | 35.0% |
| AGAAGCAATAGCACAAATGA+AGG | - | chr8_2:8527434-8527453 | Msa1232230:CDS | 35.0% | |
| ! | GCATTTAGACCAGTGAATTT+TGG | - | chr8_2:8527477-8527496 | Msa1232230:CDS | 35.0% |
| !! | TAGACCAGTGAATTTTGGAA+TGG | - | chr8_2:8527482-8527501 | Msa1232230:CDS | 35.0% |
| TCATCCATTCCAAAATTCAC+TGG | + | chr8_2:8527489-8527508 | None:intergenic | 35.0% | |
| ! | GTTTTGCAAAAGATTGTACC+TGG | - | chr8_2:8527618-8527637 | Msa1232230:CDS | 35.0% |
| !!! | TCTCAAGTTTTTAAGGTCAC+AGG | - | chr8_2:8527689-8527708 | Msa1232230:CDS | 35.0% |
| !!! | GTTTTTAAGGTCACAGGTTA+AGG | - | chr8_2:8527695-8527714 | Msa1232230:CDS | 35.0% |
| ! | GTTAAGGCACTTGAAAGTTT+AGG | - | chr8_2:8527711-8527730 | Msa1232230:CDS | 35.0% |
| TCATTTGCATGGGAAAAGAA+GGG | + | chr8_2:8527791-8527810 | None:intergenic | 35.0% | |
| ATCATTTGCATGGGAAAAGA+AGG | + | chr8_2:8527792-8527811 | None:intergenic | 35.0% | |
| TTACTAGGGATCATTTGCAT+GGG | + | chr8_2:8527801-8527820 | None:intergenic | 35.0% | |
| ATTACTAGGGATCATTTGCA+TGG | + | chr8_2:8527802-8527821 | None:intergenic | 35.0% | |
| ! | AGTACTCAACACTTTGAAGA+TGG | - | chr8_2:8526607-8526626 | Msa1232230:CDS | 35.0% |
| GAAAAGGACTGAAATGATTG+AGG | + | chr8_2:8526811-8526830 | None:intergenic | 35.0% | |
| CATTATGCCAGATTTCAACA+TGG | - | chr8_2:8526849-8526868 | Msa1232230:CDS | 35.0% | |
| !!! | GTTGAGTTTTTGTTGTTGGT+GGG | + | chr8_2:8526875-8526894 | None:intergenic | 35.0% |
| !!! | TGTTGAGTTTTTGTTGTTGG+TGG | + | chr8_2:8526876-8526895 | None:intergenic | 35.0% |
| ATTACTATCAGTTTCACCTG+AGG | + | chr8_2:8527046-8527065 | None:intergenic | 35.0% | |
| CATAATTCTTCACCTGTTGA+AGG | - | chr8_2:8527270-8527289 | Msa1232230:CDS | 35.0% | |
| ! | CATCTTGGTTTCTTGCATTT+TGG | + | chr8_2:8527324-8527343 | None:intergenic | 35.0% |
| ! | TTCATTTGTGCTATTGCTTC+TGG | + | chr8_2:8527435-8527454 | None:intergenic | 35.0% |
| AGAAGCAATAGCACAAATGA+AGG | - | chr8_2:8527434-8527453 | Msa1232230:CDS | 35.0% | |
| ! | GCATTTAGACCAGTGAATTT+TGG | - | chr8_2:8527477-8527496 | Msa1232230:CDS | 35.0% |
| !! | TAGACCAGTGAATTTTGGAA+TGG | - | chr8_2:8527482-8527501 | Msa1232230:CDS | 35.0% |
| TCATCCATTCCAAAATTCAC+TGG | + | chr8_2:8527489-8527508 | None:intergenic | 35.0% | |
| ! | GTTTTGCAAAAGATTGTACC+TGG | - | chr8_2:8527618-8527637 | Msa1232230:CDS | 35.0% |
| !!! | TCTCAAGTTTTTAAGGTCAC+AGG | - | chr8_2:8527689-8527708 | Msa1232230:CDS | 35.0% |
| !!! | GTTTTTAAGGTCACAGGTTA+AGG | - | chr8_2:8527695-8527714 | Msa1232230:CDS | 35.0% |
| ! | GTTAAGGCACTTGAAAGTTT+AGG | - | chr8_2:8527711-8527730 | Msa1232230:CDS | 35.0% |
| TCATTTGCATGGGAAAAGAA+GGG | + | chr8_2:8527791-8527810 | None:intergenic | 35.0% | |
| ATCATTTGCATGGGAAAAGA+AGG | + | chr8_2:8527792-8527811 | None:intergenic | 35.0% | |
| TTACTAGGGATCATTTGCAT+GGG | + | chr8_2:8527801-8527820 | None:intergenic | 35.0% | |
| ATTACTAGGGATCATTTGCA+TGG | + | chr8_2:8527802-8527821 | None:intergenic | 35.0% | |
| ATGGATGGTCTAAATTGGGA+TGG | - | chr8_2:8526550-8526569 | Msa1232230:CDS | 40.0% | |
| AAGAGAACACACCAATCTTG+TGG | - | chr8_2:8526584-8526603 | Msa1232230:CDS | 40.0% | |
| TGTTGAGTACTCCACAAGAT+TGG | + | chr8_2:8526598-8526617 | None:intergenic | 40.0% | |
| GTAAGGTCTACTGTCTGAAA+AGG | + | chr8_2:8526827-8526846 | None:intergenic | 40.0% | |
| GTATGTGTCTGTGTTTGTGT+CGG | + | chr8_2:8527096-8527115 | None:intergenic | 40.0% | |
| ! | TGGATGGATGTATTGATCTG+AGG | + | chr8_2:8527223-8527242 | None:intergenic | 40.0% |
| AATTCTTCACCTGTTGAAGG+TGG | - | chr8_2:8527273-8527292 | Msa1232230:CDS | 40.0% | |
| ! | AGTCTAAAACCACCTTCAAC+AGG | + | chr8_2:8527285-8527304 | None:intergenic | 40.0% |
| ! | CTTGGTTTCTTGCATTTTGG+TGG | + | chr8_2:8527321-8527340 | None:intergenic | 40.0% |
| TTGCAAAAGATTGTACCTGG+TGG | - | chr8_2:8527621-8527640 | Msa1232230:CDS | 40.0% | |
| ATGGATGGTCTAAATTGGGA+TGG | - | chr8_2:8526550-8526569 | Msa1232230:CDS | 40.0% | |
| AAGAGAACACACCAATCTTG+TGG | - | chr8_2:8526584-8526603 | Msa1232230:CDS | 40.0% | |
| TGTTGAGTACTCCACAAGAT+TGG | + | chr8_2:8526598-8526617 | None:intergenic | 40.0% | |
| GTAAGGTCTACTGTCTGAAA+AGG | + | chr8_2:8526827-8526846 | None:intergenic | 40.0% | |
| GTATGTGTCTGTGTTTGTGT+CGG | + | chr8_2:8527096-8527115 | None:intergenic | 40.0% | |
| ! | TGGATGGATGTATTGATCTG+AGG | + | chr8_2:8527223-8527242 | None:intergenic | 40.0% |
| AATTCTTCACCTGTTGAAGG+TGG | - | chr8_2:8527273-8527292 | Msa1232230:CDS | 40.0% | |
| ! | AGTCTAAAACCACCTTCAAC+AGG | + | chr8_2:8527285-8527304 | None:intergenic | 40.0% |
| ! | CTTGGTTTCTTGCATTTTGG+TGG | + | chr8_2:8527321-8527340 | None:intergenic | 40.0% |
| TTGCAAAAGATTGTACCTGG+TGG | - | chr8_2:8527621-8527640 | Msa1232230:CDS | 40.0% | |
| AATCAAAAGCTGGATCCAGC+TGG | - | chr8_2:8526767-8526786 | Msa1232230:CDS | 45.0% | |
| TAAAGGTTCTTCTCTCCAGC+TGG | + | chr8_2:8526785-8526804 | None:intergenic | 45.0% | |
| AGTAACACAGCAACTTCCTC+AGG | - | chr8_2:8527027-8527046 | Msa1232230:CDS | 45.0% | |
| ! | CTTCTGATTGAAGGTGTGTC+TGG | + | chr8_2:8527120-8527139 | None:intergenic | 45.0% |
| ! | GCACTGACACTTCTGATTGA+AGG | + | chr8_2:8527129-8527148 | None:intergenic | 45.0% |
| !! | AGAAGTGTCAGTGCTACAGA+TGG | - | chr8_2:8527135-8527154 | Msa1232230:CDS | 45.0% |
| CAAGGTCCGTTATCACATCT+TGG | + | chr8_2:8527339-8527358 | None:intergenic | 45.0% | |
| ATCCACAAACTGTTGCTGCA+AGG | - | chr8_2:8527562-8527581 | Msa1232230:CDS | 45.0% | |
| TGTTGCTGCAAGGCATAGAA+GGG | - | chr8_2:8527572-8527591 | Msa1232230:CDS | 45.0% | |
| TGTACCTGGTGGAAGCAAAA+TGG | - | chr8_2:8527632-8527651 | Msa1232230:CDS | 45.0% | |
| CACTGCTTCAATGCTTGATG+AGG | - | chr8_2:8527656-8527675 | Msa1232230:CDS | 45.0% | |
| AATCAAAAGCTGGATCCAGC+TGG | - | chr8_2:8526767-8526786 | Msa1232230:CDS | 45.0% | |
| TAAAGGTTCTTCTCTCCAGC+TGG | + | chr8_2:8526785-8526804 | None:intergenic | 45.0% | |
| AGTAACACAGCAACTTCCTC+AGG | - | chr8_2:8527027-8527046 | Msa1232230:CDS | 45.0% | |
| ! | CTTCTGATTGAAGGTGTGTC+TGG | + | chr8_2:8527120-8527139 | None:intergenic | 45.0% |
| ! | GCACTGACACTTCTGATTGA+AGG | + | chr8_2:8527129-8527148 | None:intergenic | 45.0% |
| !! | AGAAGTGTCAGTGCTACAGA+TGG | - | chr8_2:8527135-8527154 | Msa1232230:CDS | 45.0% |
| CAAGGTCCGTTATCACATCT+TGG | + | chr8_2:8527339-8527358 | None:intergenic | 45.0% | |
| ATCCACAAACTGTTGCTGCA+AGG | - | chr8_2:8527562-8527581 | Msa1232230:CDS | 45.0% | |
| TGTTGCTGCAAGGCATAGAA+GGG | - | chr8_2:8527572-8527591 | Msa1232230:CDS | 45.0% | |
| TGTACCTGGTGGAAGCAAAA+TGG | - | chr8_2:8527632-8527651 | Msa1232230:CDS | 45.0% | |
| CACTGCTTCAATGCTTGATG+AGG | - | chr8_2:8527656-8527675 | Msa1232230:CDS | 45.0% | |
| ! | TGGTGGGCCATGTTGAAATC+TGG | + | chr8_2:8526859-8526878 | None:intergenic | 50.0% |
| GTCAGTGCTACAGATGGTAC+CGG | - | chr8_2:8527141-8527160 | Msa1232230:CDS | 50.0% | |
| TGCCTTGCAGCAACAGTTTG+TGG | + | chr8_2:8527567-8527586 | None:intergenic | 50.0% | |
| CTGTTGCTGCAAGGCATAGA+AGG | - | chr8_2:8527571-8527590 | Msa1232230:CDS | 50.0% | |
| ! | GTGTCCATTTTGCTTCCACC+AGG | + | chr8_2:8527639-8527658 | None:intergenic | 50.0% |
| ! | TGGTGGGCCATGTTGAAATC+TGG | + | chr8_2:8526859-8526878 | None:intergenic | 50.0% |
| GTCAGTGCTACAGATGGTAC+CGG | - | chr8_2:8527141-8527160 | Msa1232230:CDS | 50.0% | |
| TGCCTTGCAGCAACAGTTTG+TGG | + | chr8_2:8527567-8527586 | None:intergenic | 50.0% | |
| CTGTTGCTGCAAGGCATAGA+AGG | - | chr8_2:8527571-8527590 | Msa1232230:CDS | 50.0% | |
| ! | GTGTCCATTTTGCTTCCACC+AGG | + | chr8_2:8527639-8527658 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 8526550 | 8527845 | 8526550 | ID=Msa1232230;Name=Msa1232230 |
| chr8_2 | mRNA | 8526550 | 8527845 | 8526550 | ID=Msa1232230-mRNA-1;Parent=Msa1232230;Name=Msa1232230-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|-1|0|1|-1|1|1|0|431 |
| chr8_2 | exon | 8526550 | 8527845 | 8526550 | ID=Msa1232230-mRNA-1:exon:3358;Parent=Msa1232230-mRNA-1 |
| chr8_2 | CDS | 8526550 | 8527845 | 8526550 | ID=Msa1232230-mRNA-1:cds;Parent=Msa1232230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
