Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1233020 | XP_003627098.1 | 92.642 | 299 | 18 | 2 | 9 | 307 | 9 | 303 | 7.00e-180 | 508 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1233020 | sp|Q9LRW1|LBD22_ARATH | 71.901 | 121 | 34 | 0 | 11 | 131 | 35 | 155 | 4.45e-56 | 185 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1233020 | G7LHF8 | 92.642 | 299 | 18 | 2 | 9 | 307 | 9 | 303 | 3.34e-180 | 508 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1233020 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1233020 | MtrunA17_Chr8g0342351 | 92.800 | 250 | 14 | 2 | 9 | 258 | 9 | 254 | 9.72e-156 | 436 |
| Msa1233020 | MtrunA17_Chr2g0330201 | 43.750 | 272 | 111 | 8 | 9 | 255 | 16 | 270 | 1.57e-51 | 171 |
| Msa1233020 | MtrunA17_Chr4g0059901 | 58.333 | 108 | 45 | 0 | 9 | 116 | 7 | 114 | 5.16e-36 | 130 |
| Msa1233020 | MtrunA17_Chr6g0452671 | 53.774 | 106 | 49 | 0 | 3 | 108 | 2 | 107 | 1.22e-34 | 125 |
| Msa1233020 | MtrunA17_Chr6g0452661 | 42.767 | 159 | 82 | 2 | 11 | 160 | 8 | 166 | 6.62e-31 | 116 |
| Msa1233020 | MtrunA17_Chr4g0055441 | 52.885 | 104 | 48 | 1 | 11 | 113 | 1 | 104 | 3.33e-30 | 112 |
| Msa1233020 | MtrunA17_Chr6g0452691 | 47.863 | 117 | 60 | 1 | 9 | 124 | 6 | 122 | 7.17e-29 | 109 |
| Msa1233020 | MtrunA17_Chr5g0439111 | 50.442 | 113 | 55 | 1 | 11 | 122 | 8 | 120 | 4.20e-28 | 108 |
| Msa1233020 | MtrunA17_Chr4g0040831 | 41.085 | 129 | 65 | 2 | 5 | 131 | 8 | 127 | 3.31e-26 | 102 |
| Msa1233020 | MtrunA17_Chr7g0227511 | 42.308 | 104 | 60 | 0 | 9 | 112 | 8 | 111 | 5.21e-26 | 101 |
| Msa1233020 | MtrunA17_Chr3g0117121 | 43.689 | 103 | 58 | 0 | 13 | 115 | 11 | 113 | 9.80e-26 | 101 |
| Msa1233020 | MtrunA17_Chr4g0058651 | 43.000 | 100 | 57 | 0 | 13 | 112 | 12 | 111 | 3.98e-25 | 99.8 |
| Msa1233020 | MtrunA17_Chr4g0043421 | 39.252 | 107 | 65 | 0 | 13 | 119 | 16 | 122 | 1.68e-24 | 97.4 |
| Msa1233020 | MtrunA17_Chr2g0311601 | 36.975 | 119 | 70 | 1 | 8 | 121 | 9 | 127 | 3.18e-24 | 96.3 |
| Msa1233020 | MtrunA17_Chr3g0106101 | 37.838 | 111 | 69 | 0 | 10 | 120 | 5 | 115 | 4.63e-24 | 96.3 |
| Msa1233020 | MtrunA17_Chr5g0402611 | 34.783 | 138 | 84 | 1 | 6 | 137 | 2 | 139 | 7.22e-24 | 99.4 |
| Msa1233020 | MtrunA17_Chr6g0449641 | 41.346 | 104 | 61 | 0 | 9 | 112 | 6 | 109 | 8.99e-24 | 94.7 |
| Msa1233020 | MtrunA17_Chr3g0114061 | 35.772 | 123 | 79 | 0 | 6 | 128 | 2 | 124 | 1.95e-23 | 94.4 |
| Msa1233020 | MtrunA17_Chr6g0449651 | 41.748 | 103 | 60 | 0 | 13 | 115 | 68 | 170 | 1.96e-23 | 95.5 |
| Msa1233020 | MtrunA17_Chr3g0115431 | 37.273 | 110 | 69 | 0 | 10 | 119 | 7 | 116 | 2.17e-23 | 95.9 |
| Msa1233020 | MtrunA17_Chr8g0353981 | 40.777 | 103 | 61 | 0 | 13 | 115 | 8 | 110 | 2.50e-23 | 95.9 |
| Msa1233020 | MtrunA17_Chr8g0374591 | 36.697 | 109 | 69 | 0 | 11 | 119 | 7 | 115 | 2.14e-22 | 90.5 |
| Msa1233020 | MtrunA17_Chr7g0225111 | 38.532 | 109 | 67 | 0 | 13 | 121 | 6 | 114 | 3.25e-22 | 89.7 |
| Msa1233020 | MtrunA17_Chr7g0260971 | 39.823 | 113 | 67 | 1 | 2 | 113 | 4 | 116 | 6.84e-22 | 91.7 |
| Msa1233020 | MtrunA17_Chr5g0444351 | 38.532 | 109 | 67 | 0 | 13 | 121 | 6 | 114 | 1.92e-21 | 88.6 |
| Msa1233020 | MtrunA17_Chr3g0097221 | 35.043 | 117 | 76 | 0 | 7 | 123 | 2 | 118 | 2.12e-21 | 92.0 |
| Msa1233020 | MtrunA17_Chr5g0438091 | 38.679 | 106 | 63 | 2 | 8 | 112 | 35 | 139 | 3.92e-21 | 89.0 |
| Msa1233020 | MtrunA17_Chr5g0437571 | 34.862 | 109 | 71 | 0 | 13 | 121 | 7 | 115 | 5.13e-21 | 87.8 |
| Msa1233020 | MtrunA17_Chr3g0129071 | 37.273 | 110 | 67 | 2 | 8 | 116 | 43 | 151 | 8.72e-21 | 89.0 |
| Msa1233020 | MtrunA17_Chr4g0030001 | 36.111 | 144 | 75 | 4 | 6 | 132 | 13 | 156 | 1.31e-20 | 87.4 |
| Msa1233020 | MtrunA17_Chr5g0437401 | 36.190 | 105 | 67 | 0 | 9 | 113 | 8 | 112 | 1.92e-20 | 86.7 |
| Msa1233020 | MtrunA17_Chr8g0374601 | 36.697 | 109 | 69 | 0 | 11 | 119 | 25 | 133 | 1.95e-20 | 89.0 |
| Msa1233020 | MtrunA17_Chr1g0200201 | 38.318 | 107 | 66 | 0 | 13 | 119 | 73 | 179 | 8.90e-20 | 86.3 |
| Msa1233020 | MtrunA17_Chr5g0435641 | 36.893 | 103 | 64 | 1 | 12 | 113 | 7 | 109 | 1.44e-19 | 84.7 |
| Msa1233020 | MtrunA17_Chr8g0351701 | 38.462 | 104 | 63 | 1 | 13 | 115 | 24 | 127 | 6.96e-19 | 84.0 |
| Msa1233020 | MtrunA17_Chr1g0184271 | 38.235 | 102 | 62 | 1 | 13 | 113 | 13 | 114 | 9.37e-19 | 83.6 |
| Msa1233020 | MtrunA17_Chr6g0460951 | 38.614 | 101 | 61 | 1 | 13 | 112 | 41 | 141 | 1.34e-18 | 82.8 |
| Msa1233020 | MtrunA17_Chr7g0261031 | 39.216 | 102 | 61 | 1 | 13 | 113 | 9 | 110 | 1.69e-18 | 82.4 |
| Msa1233020 | MtrunA17_Chr3g0113891 | 36.667 | 90 | 57 | 0 | 9 | 98 | 11 | 100 | 3.60e-18 | 80.9 |
| Msa1233020 | MtrunA17_Chr8g0351721 | 41.176 | 102 | 59 | 1 | 13 | 113 | 19 | 120 | 4.37e-18 | 81.3 |
| Msa1233020 | MtrunA17_Chr1g0184281 | 34.043 | 141 | 88 | 3 | 13 | 150 | 16 | 154 | 7.67e-18 | 80.5 |
| Msa1233020 | MtrunA17_Chr5g0432451 | 37.168 | 113 | 69 | 2 | 8 | 119 | 39 | 150 | 8.45e-18 | 80.9 |
| Msa1233020 | MtrunA17_Chr6g0460941 | 37.500 | 88 | 54 | 1 | 13 | 99 | 8 | 95 | 8.22e-16 | 71.6 |
| Msa1233020 | MtrunA17_Chr7g0245871 | 33.663 | 101 | 66 | 1 | 13 | 112 | 28 | 128 | 3.66e-15 | 73.6 |
| Msa1233020 | MtrunA17_Chr4g0046201 | 32.184 | 87 | 59 | 0 | 12 | 98 | 6 | 92 | 8.82e-14 | 70.1 |
| Msa1233020 | MtrunA17_Chr7g0245861 | 35.644 | 101 | 62 | 2 | 1 | 98 | 1 | 101 | 3.68e-13 | 65.9 |
| Msa1233020 | MtrunA17_Chr8g0374581 | 34.951 | 103 | 59 | 2 | 11 | 105 | 7 | 109 | 2.11e-12 | 65.5 |
| Msa1233020 | MtrunA17_Chr2g0326041 | 58.333 | 48 | 17 | 1 | 13 | 60 | 34 | 78 | 3.27e-12 | 61.6 |
| Msa1233020 | MtrunA17_Chr6g0449311 | 45.000 | 80 | 43 | 1 | 43 | 121 | 4 | 83 | 4.77e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1233020 | AT3G13850.1 | 71.901 | 121 | 34 | 0 | 11 | 131 | 35 | 155 | 4.52e-57 | 185 |
| Msa1233020 | AT1G72980.1 | 51.240 | 121 | 59 | 0 | 9 | 129 | 10 | 130 | 7.66e-39 | 136 |
| Msa1233020 | AT3G47870.1 | 52.294 | 109 | 52 | 0 | 9 | 117 | 33 | 141 | 1.55e-31 | 120 |
| Msa1233020 | AT5G63090.4 | 41.284 | 109 | 64 | 0 | 5 | 113 | 4 | 112 | 4.02e-26 | 102 |
| Msa1233020 | AT5G63090.3 | 41.284 | 109 | 64 | 0 | 5 | 113 | 4 | 112 | 4.02e-26 | 102 |
| Msa1233020 | AT5G63090.2 | 41.284 | 109 | 64 | 0 | 5 | 113 | 4 | 112 | 4.02e-26 | 102 |
| Msa1233020 | AT5G63090.1 | 41.284 | 109 | 64 | 0 | 5 | 113 | 4 | 112 | 4.02e-26 | 102 |
| Msa1233020 | AT1G65620.1 | 41.071 | 112 | 66 | 0 | 6 | 117 | 3 | 114 | 5.32e-26 | 102 |
| Msa1233020 | AT1G65620.4 | 41.071 | 112 | 66 | 0 | 6 | 117 | 3 | 114 | 5.32e-26 | 102 |
| Msa1233020 | AT1G65620.3 | 41.071 | 112 | 66 | 0 | 6 | 117 | 3 | 114 | 5.32e-26 | 102 |
| Msa1233020 | AT1G65620.5 | 41.071 | 112 | 66 | 0 | 6 | 117 | 3 | 114 | 5.32e-26 | 102 |
| Msa1233020 | AT1G65620.2 | 41.071 | 112 | 66 | 0 | 6 | 117 | 3 | 114 | 5.32e-26 | 102 |
| Msa1233020 | AT3G27650.1 | 41.584 | 101 | 59 | 0 | 6 | 106 | 33 | 133 | 2.89e-24 | 96.7 |
| Msa1233020 | AT2G30130.1 | 35.833 | 120 | 77 | 0 | 10 | 129 | 6 | 125 | 7.11e-23 | 94.0 |
| Msa1233020 | AT3G50510.1 | 40.777 | 103 | 61 | 0 | 13 | 115 | 13 | 115 | 9.04e-23 | 94.0 |
| Msa1233020 | AT3G50510.2 | 40.777 | 103 | 61 | 0 | 13 | 115 | 13 | 115 | 9.04e-23 | 94.0 |
| Msa1233020 | AT1G31320.1 | 42.529 | 87 | 50 | 0 | 13 | 99 | 14 | 100 | 1.09e-21 | 90.1 |
| Msa1233020 | AT3G26660.1 | 35.135 | 111 | 72 | 0 | 13 | 123 | 6 | 116 | 1.40e-21 | 88.6 |
| Msa1233020 | AT1G07900.1 | 32.680 | 153 | 88 | 3 | 13 | 150 | 34 | 186 | 1.87e-21 | 90.1 |
| Msa1233020 | AT2G42430.1 | 39.130 | 115 | 65 | 3 | 2 | 113 | 5 | 117 | 2.76e-21 | 90.9 |
| Msa1233020 | AT5G66870.1 | 34.821 | 112 | 73 | 0 | 8 | 119 | 3 | 114 | 4.29e-21 | 92.0 |
| Msa1233020 | AT3G26620.1 | 34.862 | 109 | 71 | 0 | 13 | 121 | 6 | 114 | 5.40e-21 | 87.0 |
| Msa1233020 | AT2G28500.1 | 34.899 | 149 | 78 | 4 | 13 | 142 | 56 | 204 | 9.01e-21 | 89.4 |
| Msa1233020 | AT3G58190.1 | 41.176 | 102 | 59 | 1 | 13 | 113 | 12 | 113 | 2.43e-20 | 87.8 |
| Msa1233020 | AT3G03760.1 | 40.594 | 101 | 59 | 1 | 13 | 112 | 52 | 152 | 1.01e-19 | 87.4 |
| Msa1233020 | AT1G06280.1 | 37.500 | 104 | 62 | 1 | 11 | 114 | 23 | 123 | 1.68e-19 | 85.1 |
| Msa1233020 | AT2G23660.2 | 37.000 | 100 | 61 | 1 | 9 | 108 | 2 | 99 | 3.72e-19 | 86.3 |
| Msa1233020 | AT2G23660.3 | 37.000 | 100 | 61 | 1 | 9 | 108 | 2 | 99 | 3.72e-19 | 86.3 |
| Msa1233020 | AT2G23660.1 | 37.000 | 100 | 61 | 1 | 9 | 108 | 2 | 99 | 3.72e-19 | 86.3 |
| Msa1233020 | AT1G16530.1 | 34.513 | 113 | 73 | 1 | 6 | 117 | 8 | 120 | 4.33e-19 | 83.2 |
| Msa1233020 | AT2G30340.2 | 35.088 | 114 | 72 | 1 | 8 | 121 | 49 | 160 | 4.54e-19 | 85.5 |
| Msa1233020 | AT2G30340.1 | 35.088 | 114 | 72 | 1 | 8 | 121 | 48 | 159 | 4.65e-19 | 85.5 |
| Msa1233020 | AT4G00210.1 | 33.077 | 130 | 86 | 1 | 13 | 141 | 12 | 141 | 1.05e-18 | 83.6 |
| Msa1233020 | AT2G42440.1 | 37.000 | 100 | 62 | 1 | 13 | 111 | 8 | 107 | 1.81e-18 | 83.2 |
| Msa1233020 | AT5G06080.1 | 31.655 | 139 | 85 | 2 | 12 | 140 | 7 | 145 | 4.62e-18 | 80.5 |
| Msa1233020 | AT2G19820.1 | 37.383 | 107 | 66 | 1 | 1 | 106 | 1 | 107 | 9.85e-18 | 78.2 |
| Msa1233020 | AT3G11090.1 | 34.545 | 110 | 65 | 2 | 9 | 118 | 8 | 110 | 1.48e-17 | 79.0 |
| Msa1233020 | AT2G45420.1 | 38.000 | 100 | 61 | 1 | 15 | 113 | 40 | 139 | 2.42e-17 | 80.5 |
| Msa1233020 | AT2G31310.1 | 32.624 | 141 | 84 | 2 | 13 | 142 | 8 | 148 | 3.28e-17 | 78.6 |
| Msa1233020 | AT4G00220.1 | 37.255 | 102 | 63 | 1 | 15 | 115 | 20 | 121 | 3.35e-17 | 79.3 |
| Msa1233020 | AT2G40470.2 | 33.929 | 112 | 74 | 0 | 8 | 119 | 16 | 127 | 3.52e-17 | 79.0 |
| Msa1233020 | AT2G40470.1 | 33.929 | 112 | 74 | 0 | 8 | 119 | 41 | 152 | 4.18e-17 | 79.0 |
| Msa1233020 | AT5G15060.1 | 40.741 | 81 | 46 | 1 | 5 | 83 | 10 | 90 | 3.40e-16 | 74.7 |
| Msa1233020 | AT5G35900.1 | 34.906 | 106 | 62 | 2 | 10 | 108 | 3 | 108 | 1.80e-15 | 74.3 |
| Msa1233020 | AT2G45410.1 | 35.088 | 114 | 73 | 1 | 15 | 127 | 19 | 132 | 9.86e-14 | 68.9 |
Find 43 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAACAACATAATAATAAT+TGG | 0.125422 | 8_2:+9662767 | Msa1233020:CDS |
| CTTAATGCACACAAATTATT+TGG | 0.164688 | 8_2:+9662280 | Msa1233020:CDS |
| TGTGATGAAAGAAATGAATT+AGG | 0.196401 | 8_2:+9662880 | Msa1233020:CDS |
| CAAATAATTTGTGTGCATTA+AGG | 0.234733 | 8_2:-9662279 | None:intergenic |
| CCACCAGGATCTATTGTTTC+CGG | 0.308401 | 8_2:+9662604 | Msa1233020:CDS |
| TGTCTATCATGAGGAAAATA+AGG | 0.316434 | 8_2:-9662247 | None:intergenic |
| ATGAATTCAGACTCATTGTT+AGG | 0.332397 | 8_2:+9662571 | Msa1233020:CDS |
| GCAACAACATAATAATAATT+GGG | 0.338766 | 8_2:+9662768 | Msa1233020:CDS |
| GTGATGAAAGAAATGAATTA+GGG | 0.378390 | 8_2:+9662881 | Msa1233020:CDS |
| TCACAAGGTATATCAAGAAT+TGG | 0.381403 | 8_2:-9662862 | None:intergenic |
| CCATGTTCTTCTTGTAATTG+TGG | 0.434750 | 8_2:-9662673 | None:intergenic |
| ACCTGTGGTGAAGTATTTCT+CGG | 0.435347 | 8_2:-9662912 | None:intergenic |
| CATCACTAGCATTACTACTT+TGG | 0.436790 | 8_2:-9662825 | None:intergenic |
| CTCATGGCTTGATCTTTAAG+AGG | 0.439515 | 8_2:-9662343 | None:intergenic |
| CTATCATCTTTGTCATTGCA+TGG | 0.444287 | 8_2:+9662802 | Msa1233020:CDS |
| TTTACACCTGCATCATCAAC+TGG | 0.451044 | 8_2:-9663573 | None:intergenic |
| ACAACCACCAACAGGATCAT+TGG | 0.454245 | 8_2:-9662395 | None:intergenic |
| CAACAAATACAAGTTAATTA+CGG | 0.476601 | 8_2:+9662535 | Msa1233020:CDS |
| TATTTGTAACAACCACCAAC+AGG | 0.515920 | 8_2:-9662403 | None:intergenic |
| CAACAACATAATAATAATTG+GGG | 0.530146 | 8_2:+9662769 | Msa1233020:CDS |
| TAAGGTGCTAGAATGCAATC+AGG | 0.530324 | 8_2:-9662229 | None:intergenic |
| TATTGTTTCCGGTACCGCGC+CGG | 0.538454 | 8_2:+9662615 | Msa1233020:CDS |
| TTATTATTATGTTGTTGCAA+AGG | 0.540482 | 8_2:-9662763 | None:intergenic |
| CCTGTGGTGAAGTATTTCTC+GGG | 0.548443 | 8_2:-9662911 | None:intergenic |
| AATAATATGCAGTGATGAAG+AGG | 0.551632 | 8_2:+9663421 | Msa1233020:intron |
| GTACCGGAAACAATAGATCC+TGG | 0.559473 | 8_2:-9662607 | None:intergenic |
| ATTACAAGAAGAACATGGAC+AGG | 0.564776 | 8_2:+9662678 | Msa1233020:CDS |
| AATTCATTTCTTTCATCACA+AGG | 0.571373 | 8_2:-9662877 | None:intergenic |
| CCCGAGAAATACTTCACCAC+AGG | 0.588850 | 8_2:+9662911 | Msa1233020:CDS |
| GATCAAGATCATGATCTGAA+AGG | 0.590787 | 8_2:+9663518 | Msa1233020:CDS |
| AATTGTCTTTGTCTATCATG+AGG | 0.605255 | 8_2:-9662256 | None:intergenic |
| ATGGCTTGATCTTTAAGAGG+AGG | 0.607095 | 8_2:-9662340 | None:intergenic |
| CGGGCCAATGATCCTGTTGG+TGG | 0.607502 | 8_2:+9662391 | Msa1233020:CDS |
| ACATTGTAATGATAATGAGC+CGG | 0.614117 | 8_2:-9662634 | None:intergenic |
| GAGGGATTAATTAAAACAGA+TGG | 0.625680 | 8_2:+9663461 | Msa1233020:CDS |
| ACATGCAGCACATGCTTGAG+TGG | 0.644890 | 8_2:-9662182 | None:intergenic |
| CCACAATTACAAGAAGAACA+TGG | 0.648093 | 8_2:+9662673 | Msa1233020:CDS |
| ATGCGGGCCAATGATCCTGT+TGG | 0.648354 | 8_2:+9662388 | Msa1233020:CDS |
| ACAACATAATAATAATTGGG+GGG | 0.660517 | 8_2:+9662771 | Msa1233020:CDS |
| CTCTTAAAGATCAAGCCATG+AGG | 0.672372 | 8_2:+9662344 | Msa1233020:CDS |
| CCGGAAACAATAGATCCTGG+TGG | 0.687465 | 8_2:-9662604 | None:intergenic |
| AACAACATAATAATAATTGG+GGG | 0.697306 | 8_2:+9662770 | Msa1233020:CDS |
| GTAATGATAATGAGCCGGCG+CGG | 0.775589 | 8_2:-9662629 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTCATTTATTGTTTATAT+AGG | - | chr8_2:9663113-9663132 | None:intergenic | 10.0% |
| !! | ATTTCATTTATTGTTTATAT+AGG | - | chr8_2:9663113-9663132 | None:intergenic | 10.0% |
| !!! | ATTATTGGATTAGAAATTAA+TGG | + | chr8_2:9663240-9663259 | Msa1233020:intron | 15.0% |
| !! | TATATTGTTAAAATCAATGA+TGG | - | chr8_2:9663291-9663310 | None:intergenic | 15.0% |
| !!! | ATTATTGGATTAGAAATTAA+TGG | + | chr8_2:9663240-9663259 | Msa1233020:intron | 15.0% |
| !! | TATATTGTTAAAATCAATGA+TGG | - | chr8_2:9663291-9663310 | None:intergenic | 15.0% |
| !! | CAACAAATACAAGTTAATTA+CGG | + | chr8_2:9662535-9662554 | Msa1233020:CDS | 20.0% |
| !! | TTATTATTATGTTGTTGCAA+AGG | - | chr8_2:9662766-9662785 | None:intergenic | 20.0% |
| !! | TGCAACAACATAATAATAAT+TGG | + | chr8_2:9662767-9662786 | Msa1233020:CDS | 20.0% |
| !! | GCAACAACATAATAATAATT+GGG | + | chr8_2:9662768-9662787 | Msa1233020:CDS | 20.0% |
| !! | CAACAACATAATAATAATTG+GGG | + | chr8_2:9662769-9662788 | Msa1233020:CDS | 20.0% |
| !! | AACAACATAATAATAATTGG+GGG | + | chr8_2:9662770-9662789 | Msa1233020:CDS | 20.0% |
| !! | AGAAAAAAATAAATTACCTG+TGG | - | chr8_2:9662930-9662949 | None:intergenic | 20.0% |
| !! | ATATGTTTGTAGTGTATTAT+TGG | + | chr8_2:9663225-9663244 | Msa1233020:intron | 20.0% |
| !! | TTAACAATATATTCACAGAA+TGG | + | chr8_2:9663300-9663319 | Msa1233020:intron | 20.0% |
| !! | CAACAAATACAAGTTAATTA+CGG | + | chr8_2:9662535-9662554 | Msa1233020:CDS | 20.0% |
| !! | TTATTATTATGTTGTTGCAA+AGG | - | chr8_2:9662766-9662785 | None:intergenic | 20.0% |
| !! | TGCAACAACATAATAATAAT+TGG | + | chr8_2:9662767-9662786 | Msa1233020:CDS | 20.0% |
| !! | GCAACAACATAATAATAATT+GGG | + | chr8_2:9662768-9662787 | Msa1233020:CDS | 20.0% |
| !! | CAACAACATAATAATAATTG+GGG | + | chr8_2:9662769-9662788 | Msa1233020:CDS | 20.0% |
| !! | AACAACATAATAATAATTGG+GGG | + | chr8_2:9662770-9662789 | Msa1233020:CDS | 20.0% |
| !! | AGAAAAAAATAAATTACCTG+TGG | - | chr8_2:9662930-9662949 | None:intergenic | 20.0% |
| !! | ATATGTTTGTAGTGTATTAT+TGG | + | chr8_2:9663225-9663244 | Msa1233020:intron | 20.0% |
| !! | TTAACAATATATTCACAGAA+TGG | + | chr8_2:9663300-9663319 | Msa1233020:intron | 20.0% |
| !! | CAAATAATTTGTGTGCATTA+AGG | - | chr8_2:9662282-9662301 | None:intergenic | 25.0% |
| ! | CTTAATGCACACAAATTATT+TGG | + | chr8_2:9662280-9662299 | Msa1233020:CDS | 25.0% |
| !!! | TCATTTTTCAATCTGATATG+CGG | + | chr8_2:9662371-9662390 | Msa1233020:CDS | 25.0% |
| ! | ACAACATAATAATAATTGGG+GGG | + | chr8_2:9662771-9662790 | Msa1233020:CDS | 25.0% |
| ! | AATTCATTTCTTTCATCACA+AGG | - | chr8_2:9662880-9662899 | None:intergenic | 25.0% |
| ! | TGTGATGAAAGAAATGAATT+AGG | + | chr8_2:9662880-9662899 | Msa1233020:CDS | 25.0% |
| ! | GTGATGAAAGAAATGAATTA+GGG | + | chr8_2:9662881-9662900 | Msa1233020:CDS | 25.0% |
| ! | GATAGTAATTTGATAGGAAA+GGG | - | chr8_2:9663078-9663097 | None:intergenic | 25.0% |
| ! | TTAGTCGATAGTAATTTGAT+AGG | - | chr8_2:9663084-9663103 | None:intergenic | 25.0% |
| !! | CAAATAATTTGTGTGCATTA+AGG | - | chr8_2:9662282-9662301 | None:intergenic | 25.0% |
| ! | CTTAATGCACACAAATTATT+TGG | + | chr8_2:9662280-9662299 | Msa1233020:CDS | 25.0% |
| !!! | TCATTTTTCAATCTGATATG+CGG | + | chr8_2:9662371-9662390 | Msa1233020:CDS | 25.0% |
| ! | ACAACATAATAATAATTGGG+GGG | + | chr8_2:9662771-9662790 | Msa1233020:CDS | 25.0% |
| ! | AATTCATTTCTTTCATCACA+AGG | - | chr8_2:9662880-9662899 | None:intergenic | 25.0% |
| ! | TGTGATGAAAGAAATGAATT+AGG | + | chr8_2:9662880-9662899 | Msa1233020:CDS | 25.0% |
| ! | GTGATGAAAGAAATGAATTA+GGG | + | chr8_2:9662881-9662900 | Msa1233020:CDS | 25.0% |
| ! | GATAGTAATTTGATAGGAAA+GGG | - | chr8_2:9663078-9663097 | None:intergenic | 25.0% |
| ! | TTAGTCGATAGTAATTTGAT+AGG | - | chr8_2:9663084-9663103 | None:intergenic | 25.0% |
| TGTCTATCATGAGGAAAATA+AGG | - | chr8_2:9662250-9662269 | None:intergenic | 30.0% | |
| AATTGTCTTTGTCTATCATG+AGG | - | chr8_2:9662259-9662278 | None:intergenic | 30.0% | |
| TTGAAAAATGATTGTCCTCA+TGG | - | chr8_2:9662362-9662381 | None:intergenic | 30.0% | |
| !! | CATTTTTCAATCTGATATGC+GGG | + | chr8_2:9662372-9662391 | Msa1233020:CDS | 30.0% |
| ! | TTGTTGTTGTGATCGAAAAA+TGG | - | chr8_2:9662497-9662516 | None:intergenic | 30.0% |
| ATGAATTCAGACTCATTGTT+AGG | + | chr8_2:9662571-9662590 | Msa1233020:CDS | 30.0% | |
| ! | TTAGGTTTTTATAATCCACC+AGG | + | chr8_2:9662589-9662608 | Msa1233020:CDS | 30.0% |
| ! | ACATTGTAATGATAATGAGC+CGG | - | chr8_2:9662637-9662656 | None:intergenic | 30.0% |
| TCACAAGGTATATCAAGAAT+TGG | - | chr8_2:9662865-9662884 | None:intergenic | 30.0% | |
| TTGAAAAGTTACATTACCGA+CGG | + | chr8_2:9662974-9662993 | Msa1233020:intron | 30.0% | |
| GGAAATATGGTTAGTAGTAT+GGG | + | chr8_2:9662995-9663014 | Msa1233020:intron | 30.0% | |
| !! | ACATTGAAGGAGTATTATGT+AGG | + | chr8_2:9663022-9663041 | Msa1233020:intron | 30.0% |
| CGATAGTAATTTGATAGGAA+AGG | - | chr8_2:9663079-9663098 | None:intergenic | 30.0% | |
| AATAATATGCAGTGATGAAG+AGG | + | chr8_2:9663421-9663440 | Msa1233020:intron | 30.0% | |
| !!! | GTTTTGTTTAAGATAGACGA+GGG | + | chr8_2:9663443-9663462 | Msa1233020:CDS | 30.0% |
| GAGGGATTAATTAAAACAGA+TGG | + | chr8_2:9663461-9663480 | Msa1233020:CDS | 30.0% | |
| TGTCTATCATGAGGAAAATA+AGG | - | chr8_2:9662250-9662269 | None:intergenic | 30.0% | |
| AATTGTCTTTGTCTATCATG+AGG | - | chr8_2:9662259-9662278 | None:intergenic | 30.0% | |
| TTGAAAAATGATTGTCCTCA+TGG | - | chr8_2:9662362-9662381 | None:intergenic | 30.0% | |
| !! | CATTTTTCAATCTGATATGC+GGG | + | chr8_2:9662372-9662391 | Msa1233020:CDS | 30.0% |
| ! | TTGTTGTTGTGATCGAAAAA+TGG | - | chr8_2:9662497-9662516 | None:intergenic | 30.0% |
| ATGAATTCAGACTCATTGTT+AGG | + | chr8_2:9662571-9662590 | Msa1233020:CDS | 30.0% | |
| ! | TTAGGTTTTTATAATCCACC+AGG | + | chr8_2:9662589-9662608 | Msa1233020:CDS | 30.0% |
| ! | ACATTGTAATGATAATGAGC+CGG | - | chr8_2:9662637-9662656 | None:intergenic | 30.0% |
| TCACAAGGTATATCAAGAAT+TGG | - | chr8_2:9662865-9662884 | None:intergenic | 30.0% | |
| TTGAAAAGTTACATTACCGA+CGG | + | chr8_2:9662974-9662993 | Msa1233020:intron | 30.0% | |
| GGAAATATGGTTAGTAGTAT+GGG | + | chr8_2:9662995-9663014 | Msa1233020:intron | 30.0% | |
| !! | ACATTGAAGGAGTATTATGT+AGG | + | chr8_2:9663022-9663041 | Msa1233020:intron | 30.0% |
| CGATAGTAATTTGATAGGAA+AGG | - | chr8_2:9663079-9663098 | None:intergenic | 30.0% | |
| AATAATATGCAGTGATGAAG+AGG | + | chr8_2:9663421-9663440 | Msa1233020:intron | 30.0% | |
| !!! | GTTTTGTTTAAGATAGACGA+GGG | + | chr8_2:9663443-9663462 | Msa1233020:CDS | 30.0% |
| GAGGGATTAATTAAAACAGA+TGG | + | chr8_2:9663461-9663480 | Msa1233020:CDS | 30.0% | |
| TATTTGTAACAACCACCAAC+AGG | - | chr8_2:9662406-9662425 | None:intergenic | 35.0% | |
| CCATGTTCTTCTTGTAATTG+TGG | - | chr8_2:9662676-9662695 | None:intergenic | 35.0% | |
| CCACAATTACAAGAAGAACA+TGG | + | chr8_2:9662673-9662692 | Msa1233020:CDS | 35.0% | |
| ATTACAAGAAGAACATGGAC+AGG | + | chr8_2:9662678-9662697 | Msa1233020:CDS | 35.0% | |
| CTATCATCTTTGTCATTGCA+TGG | + | chr8_2:9662802-9662821 | Msa1233020:CDS | 35.0% | |
| CATCACTAGCATTACTACTT+TGG | - | chr8_2:9662828-9662847 | None:intergenic | 35.0% | |
| TTACATTACCGACGGAAATA+TGG | + | chr8_2:9662982-9663001 | Msa1233020:intron | 35.0% | |
| ACTACTAACCATATTTCCGT+CGG | - | chr8_2:9662993-9663012 | None:intergenic | 35.0% | |
| CGGAAATATGGTTAGTAGTA+TGG | + | chr8_2:9662994-9663013 | Msa1233020:intron | 35.0% | |
| ! | TAGTATGGGTTGAACATTGA+AGG | + | chr8_2:9663009-9663028 | Msa1233020:intron | 35.0% |
| ATCTAACATGATCCAGTTCT+TGG | + | chr8_2:9663396-9663415 | Msa1233020:intron | 35.0% | |
| GCATATTATTAGCCAAGAAC+TGG | - | chr8_2:9663411-9663430 | None:intergenic | 35.0% | |
| !!! | GGTTTTGTTTAAGATAGACG+AGG | + | chr8_2:9663442-9663461 | Msa1233020:CDS | 35.0% |
| GATCAAGATCATGATCTGAA+AGG | + | chr8_2:9663518-9663537 | Msa1233020:CDS | 35.0% | |
| TATTTGTAACAACCACCAAC+AGG | - | chr8_2:9662406-9662425 | None:intergenic | 35.0% | |
| CCATGTTCTTCTTGTAATTG+TGG | - | chr8_2:9662676-9662695 | None:intergenic | 35.0% | |
| CCACAATTACAAGAAGAACA+TGG | + | chr8_2:9662673-9662692 | Msa1233020:CDS | 35.0% | |
| ATTACAAGAAGAACATGGAC+AGG | + | chr8_2:9662678-9662697 | Msa1233020:CDS | 35.0% | |
| CTATCATCTTTGTCATTGCA+TGG | + | chr8_2:9662802-9662821 | Msa1233020:CDS | 35.0% | |
| CATCACTAGCATTACTACTT+TGG | - | chr8_2:9662828-9662847 | None:intergenic | 35.0% | |
| TTACATTACCGACGGAAATA+TGG | + | chr8_2:9662982-9663001 | Msa1233020:intron | 35.0% | |
| ACTACTAACCATATTTCCGT+CGG | - | chr8_2:9662993-9663012 | None:intergenic | 35.0% | |
| CGGAAATATGGTTAGTAGTA+TGG | + | chr8_2:9662994-9663013 | Msa1233020:intron | 35.0% | |
| ! | TAGTATGGGTTGAACATTGA+AGG | + | chr8_2:9663009-9663028 | Msa1233020:intron | 35.0% |
| ATCTAACATGATCCAGTTCT+TGG | + | chr8_2:9663396-9663415 | Msa1233020:intron | 35.0% | |
| GCATATTATTAGCCAAGAAC+TGG | - | chr8_2:9663411-9663430 | None:intergenic | 35.0% | |
| !!! | GGTTTTGTTTAAGATAGACG+AGG | + | chr8_2:9663442-9663461 | Msa1233020:CDS | 35.0% |
| GATCAAGATCATGATCTGAA+AGG | + | chr8_2:9663518-9663537 | Msa1233020:CDS | 35.0% | |
| ! | TAAGGTGCTAGAATGCAATC+AGG | - | chr8_2:9662232-9662251 | None:intergenic | 40.0% |
| ! | ATGGCTTGATCTTTAAGAGG+AGG | - | chr8_2:9662343-9662362 | None:intergenic | 40.0% |
| CTCATGGCTTGATCTTTAAG+AGG | - | chr8_2:9662346-9662365 | None:intergenic | 40.0% | |
| CTCTTAAAGATCAAGCCATG+AGG | + | chr8_2:9662344-9662363 | Msa1233020:CDS | 40.0% | |
| ! | ACCTGTGGTGAAGTATTTCT+CGG | - | chr8_2:9662915-9662934 | None:intergenic | 40.0% |
| ! | TAAGGTGCTAGAATGCAATC+AGG | - | chr8_2:9662232-9662251 | None:intergenic | 40.0% |
| ! | ATGGCTTGATCTTTAAGAGG+AGG | - | chr8_2:9662343-9662362 | None:intergenic | 40.0% |
| CTCATGGCTTGATCTTTAAG+AGG | - | chr8_2:9662346-9662365 | None:intergenic | 40.0% | |
| CTCTTAAAGATCAAGCCATG+AGG | + | chr8_2:9662344-9662363 | Msa1233020:CDS | 40.0% | |
| ! | ACCTGTGGTGAAGTATTTCT+CGG | - | chr8_2:9662915-9662934 | None:intergenic | 40.0% |
| ACAACCACCAACAGGATCAT+TGG | - | chr8_2:9662398-9662417 | None:intergenic | 45.0% | |
| CCACCAGGATCTATTGTTTC+CGG | + | chr8_2:9662604-9662623 | Msa1233020:CDS | 45.0% | |
| GTACCGGAAACAATAGATCC+TGG | - | chr8_2:9662610-9662629 | None:intergenic | 45.0% | |
| ! | CCTGTGGTGAAGTATTTCTC+GGG | - | chr8_2:9662914-9662933 | None:intergenic | 45.0% |
| ACAACCACCAACAGGATCAT+TGG | - | chr8_2:9662398-9662417 | None:intergenic | 45.0% | |
| CCACCAGGATCTATTGTTTC+CGG | + | chr8_2:9662604-9662623 | Msa1233020:CDS | 45.0% | |
| GTACCGGAAACAATAGATCC+TGG | - | chr8_2:9662610-9662629 | None:intergenic | 45.0% | |
| ! | CCTGTGGTGAAGTATTTCTC+GGG | - | chr8_2:9662914-9662933 | None:intergenic | 45.0% |
| ACATGCAGCACATGCTTGAG+TGG | - | chr8_2:9662185-9662204 | None:intergenic | 50.0% | |
| CCGGAAACAATAGATCCTGG+TGG | - | chr8_2:9662607-9662626 | None:intergenic | 50.0% | |
| ! | GTAATGATAATGAGCCGGCG+CGG | - | chr8_2:9662632-9662651 | None:intergenic | 50.0% |
| CCCGAGAAATACTTCACCAC+AGG | + | chr8_2:9662911-9662930 | Msa1233020:CDS | 50.0% | |
| ACATGCAGCACATGCTTGAG+TGG | - | chr8_2:9662185-9662204 | None:intergenic | 50.0% | |
| CCGGAAACAATAGATCCTGG+TGG | - | chr8_2:9662607-9662626 | None:intergenic | 50.0% | |
| ! | GTAATGATAATGAGCCGGCG+CGG | - | chr8_2:9662632-9662651 | None:intergenic | 50.0% |
| CCCGAGAAATACTTCACCAC+AGG | + | chr8_2:9662911-9662930 | Msa1233020:CDS | 50.0% | |
| ATGCGGGCCAATGATCCTGT+TGG | + | chr8_2:9662388-9662407 | Msa1233020:CDS | 55.0% | |
| TATTGTTTCCGGTACCGCGC+CGG | + | chr8_2:9662615-9662634 | Msa1233020:CDS | 55.0% | |
| ATGCGGGCCAATGATCCTGT+TGG | + | chr8_2:9662388-9662407 | Msa1233020:CDS | 55.0% | |
| TATTGTTTCCGGTACCGCGC+CGG | + | chr8_2:9662615-9662634 | Msa1233020:CDS | 55.0% | |
| CGGGCCAATGATCCTGTTGG+TGG | + | chr8_2:9662391-9662410 | Msa1233020:CDS | 60.0% | |
| ATAATGAGCCGGCGCGGTAC+CGG | - | chr8_2:9662626-9662645 | None:intergenic | 60.0% | |
| CGGGCCAATGATCCTGTTGG+TGG | + | chr8_2:9662391-9662410 | Msa1233020:CDS | 60.0% | |
| ATAATGAGCCGGCGCGGTAC+CGG | - | chr8_2:9662626-9662645 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 9662157 | 9663580 | 9662157 | ID=Msa1233020;Name=Msa1233020 |
| chr8_2 | mRNA | 9662157 | 9663580 | 9662157 | ID=Msa1233020-mRNA-1;Parent=Msa1233020;Name=Msa1233020-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|0|0|1|1|1|2|0|307 |
| chr8_2 | exon | 9662157 | 9662932 | 9662157 | ID=Msa1233020-mRNA-1:exon:3805;Parent=Msa1233020-mRNA-1 |
| chr8_2 | exon | 9663433 | 9663580 | 9663433 | ID=Msa1233020-mRNA-1:exon:3806;Parent=Msa1233020-mRNA-1 |
| chr8_2 | CDS | 9662157 | 9662932 | 9662157 | ID=Msa1233020-mRNA-1:cds;Parent=Msa1233020-mRNA-1 |
| chr8_2 | CDS | 9663433 | 9663580 | 9663433 | ID=Msa1233020-mRNA-1:cds;Parent=Msa1233020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
