Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1233390 | XP_013470410.1 | 77.612 | 134 | 27 | 1 | 6 | 136 | 77 | 210 | 5.41e-53 | 176 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1233390 | sp|P27347|MNB1B_MAIZE | 48.750 | 80 | 41 | 0 | 21 | 100 | 31 | 110 | 2.85e-19 | 81.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1233390 | A0A072VSQ8 | 77.612 | 134 | 27 | 1 | 6 | 136 | 77 | 210 | 2.58e-53 | 176 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1233390 | TR | HMG |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1233390 | MtrunA17_Chr1g0212341 | 77.612 | 134 | 27 | 1 | 6 | 136 | 77 | 210 | 4.97e-57 | 176 |
| Msa1233390 | MtrunA17_Chr8g0342651 | 87.879 | 66 | 8 | 0 | 6 | 71 | 161 | 226 | 4.84e-35 | 120 |
| Msa1233390 | MtrunA17_Chr3g0143991 | 50.602 | 83 | 41 | 0 | 18 | 100 | 32 | 114 | 1.36e-21 | 84.3 |
| Msa1233390 | MtrunA17_Chr5g0407011 | 41.905 | 105 | 57 | 1 | 15 | 115 | 16 | 120 | 1.76e-19 | 78.6 |
| Msa1233390 | MtrunA17_Chr7g0242251 | 48.649 | 74 | 38 | 0 | 27 | 100 | 47 | 120 | 4.14e-18 | 75.9 |
| Msa1233390 | MtrunA17_Chr8g0370431 | 36.364 | 110 | 59 | 2 | 15 | 119 | 16 | 119 | 3.54e-15 | 67.4 |
| Msa1233390 | MtrunA17_Chr4g0052011 | 43.750 | 80 | 45 | 0 | 21 | 100 | 54 | 133 | 2.98e-13 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1233390 | AT3G51880.2 | 38.760 | 129 | 74 | 2 | 12 | 136 | 35 | 162 | 1.98e-19 | 80.1 |
| Msa1233390 | AT3G51880.5 | 40.179 | 112 | 66 | 1 | 12 | 123 | 35 | 145 | 5.95e-19 | 78.6 |
| Msa1233390 | AT3G51880.1 | 40.179 | 112 | 66 | 1 | 12 | 123 | 35 | 145 | 5.95e-19 | 78.6 |
| Msa1233390 | AT3G51880.3 | 40.179 | 112 | 66 | 1 | 12 | 123 | 35 | 145 | 5.95e-19 | 78.6 |
| Msa1233390 | AT4G35570.1 | 41.667 | 96 | 55 | 1 | 22 | 117 | 25 | 119 | 1.10e-18 | 76.6 |
| Msa1233390 | AT4G35570.2 | 41.667 | 96 | 55 | 1 | 22 | 117 | 25 | 119 | 1.10e-18 | 76.6 |
| Msa1233390 | AT3G51880.4 | 42.000 | 100 | 57 | 1 | 12 | 111 | 35 | 133 | 1.93e-18 | 77.0 |
| Msa1233390 | AT2G17560.3 | 39.785 | 93 | 55 | 1 | 22 | 113 | 25 | 117 | 8.43e-17 | 72.0 |
| Msa1233390 | AT2G17560.2 | 39.785 | 93 | 55 | 1 | 22 | 113 | 25 | 117 | 9.46e-17 | 72.0 |
| Msa1233390 | AT2G17560.1 | 39.785 | 93 | 55 | 1 | 22 | 113 | 25 | 117 | 9.46e-17 | 72.0 |
| Msa1233390 | AT1G20696.1 | 43.689 | 103 | 56 | 2 | 13 | 114 | 18 | 119 | 2.17e-16 | 70.9 |
| Msa1233390 | AT1G20693.3 | 42.857 | 98 | 54 | 2 | 19 | 114 | 25 | 122 | 3.48e-16 | 70.5 |
| Msa1233390 | AT1G20693.1 | 42.857 | 98 | 54 | 2 | 19 | 114 | 25 | 122 | 3.56e-16 | 70.5 |
| Msa1233390 | AT1G20693.2 | 42.857 | 98 | 54 | 2 | 19 | 114 | 25 | 122 | 4.31e-16 | 70.5 |
| Msa1233390 | AT1G20696.5 | 44.318 | 88 | 48 | 1 | 13 | 100 | 18 | 104 | 2.06e-15 | 68.2 |
| Msa1233390 | AT1G20696.2 | 44.318 | 88 | 48 | 1 | 13 | 100 | 18 | 104 | 9.68e-15 | 67.0 |
| Msa1233390 | AT5G23420.1 | 54.930 | 71 | 27 | 2 | 28 | 96 | 112 | 179 | 4.37e-14 | 67.0 |
| Msa1233390 | AT2G34450.4 | 43.478 | 69 | 39 | 0 | 32 | 100 | 64 | 132 | 1.68e-11 | 58.5 |
| Msa1233390 | AT2G34450.3 | 43.478 | 69 | 39 | 0 | 32 | 100 | 64 | 132 | 1.68e-11 | 58.5 |
| Msa1233390 | AT2G34450.1 | 43.478 | 69 | 39 | 0 | 32 | 100 | 64 | 132 | 1.68e-11 | 58.5 |
Find 35 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTTGAAATGGCTTGATTT+AGG | 0.245122 | 8_2:+10178473 | Msa1233390:three_prime_UTR |
| TAGGCTAAATCTGTATAGTT+TGG | 0.277493 | 8_2:+10178492 | Msa1233390:three_prime_UTR |
| ACTTGATTTCTCTGTTGAAA+TGG | 0.334482 | 8_2:+10178462 | Msa1233390:three_prime_UTR |
| TAAAGTTGGGAAAGGGAAAA+AGG | 0.356050 | 8_2:+10177694 | Msa1233390:CDS |
| ATCTTGATTCAAAGGATGTT+AGG | 0.404379 | 8_2:+10177887 | Msa1233390:CDS |
| TCTTCCGTCTCTCCTGGTGC+AGG | 0.423182 | 8_2:-10178396 | None:intergenic |
| CTTCCGTCTCTCCTGGTGCA+GGG | 0.453369 | 8_2:-10178395 | None:intergenic |
| ACTTTAGTCCGTTTCGCAGT+TGG | 0.458641 | 8_2:-10177677 | None:intergenic |
| GTTAACTCTTCCGTCTCTCC+TGG | 0.463784 | 8_2:-10178402 | None:intergenic |
| GAGGAGTAGTGGTAGCGTTT+CGG | 0.468721 | 8_2:+10178429 | Msa1233390:exon |
| GGAAGCTAATCTTGATTCAA+AGG | 0.468919 | 8_2:+10177879 | Msa1233390:CDS |
| AGAAGGCCAATCTGATGATA+AGG | 0.473418 | 8_2:+10178368 | Msa1233390:CDS |
| ACTGCGAAACGGACTAAAGT+TGG | 0.477591 | 8_2:+10177680 | Msa1233390:CDS |
| GGGCTTCCTTATCATCAGAT+TGG | 0.481597 | 8_2:-10178374 | None:intergenic |
| AGCCCCTGCACCAGGAGAGA+CGG | 0.488358 | 8_2:+10178392 | Msa1233390:CDS |
| CTGCGAAACGGACTAAAGTT+GGG | 0.511483 | 8_2:+10177681 | Msa1233390:CDS |
| AGTTAACAGATGAGGAGTAG+TGG | 0.515594 | 8_2:+10178418 | Msa1233390:CDS |
| GATAAGGAAGCCCCTGCACC+AGG | 0.518868 | 8_2:+10178384 | Msa1233390:CDS |
| TTCCGTCTCTCCTGGTGCAG+GGG | 0.527055 | 8_2:-10178394 | None:intergenic |
| CGGGAGGAATCTGATAAAGA+AGG | 0.539570 | 8_2:+10178351 | Msa1233390:CDS |
| GTAAGGAAGATTGCGAGAAG+TGG | 0.541777 | 8_2:+10178016 | Msa1233390:CDS |
| ATGAAAAGAAAGAAATCAGT+TGG | 0.544749 | 8_2:-10177746 | None:intergenic |
| CAAAAGAACCAACTGCGAAA+CGG | 0.556686 | 8_2:+10177669 | Msa1233390:CDS |
| GAAGTGGAGGTCTTTGACTG+AGG | 0.557902 | 8_2:+10178032 | Msa1233390:CDS |
| TTGATTCAAAGGATGTTAGG+AGG | 0.570900 | 8_2:+10177890 | Msa1233390:CDS |
| GACGGAAGAGTTAACAGATG+AGG | 0.573003 | 8_2:+10178410 | Msa1233390:CDS |
| AGCAACATTATACAATTCCA+TGG | 0.578280 | 8_2:-10178217 | None:intergenic |
| AACGGACTAAAGTTGGGAAA+GGG | 0.587037 | 8_2:+10177687 | Msa1233390:CDS |
| AAACGGACTAAAGTTGGGAA+AGG | 0.588435 | 8_2:+10177686 | Msa1233390:CDS |
| TGATTCAAAGGATGTTAGGA+GGG | 0.600809 | 8_2:+10177891 | Msa1233390:CDS |
| AGGAAGATTGCGAGAAGTGG+AGG | 0.614149 | 8_2:+10178019 | Msa1233390:CDS |
| GGCAGAATATGAGAAGGCCA+TGG | 0.621119 | 8_2:+10178200 | Msa1233390:CDS |
| TATGTTTGTTCAGGATCGGG+AGG | 0.638946 | 8_2:+10178335 | Msa1233390:intron |
| ACTCATGGCAGAATATGAGA+AGG | 0.674706 | 8_2:+10178194 | Msa1233390:CDS |
| AAAGGTTAAGGATTCTAATG+CGG | 0.688426 | 8_2:+10177712 | Msa1233390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTCTTTCTTTTCATGTAA+GGG | + | chr8_2:10177753-10177772 | Msa1233390:intron | 20.0% |
| !!! | TGTTTTGATTAACTTATCTA+AGG | + | chr8_2:10177950-10177969 | Msa1233390:intron | 20.0% |
| !! | TGATATGGTTAAAATTGTTT+AGG | + | chr8_2:10178140-10178159 | Msa1233390:intron | 20.0% |
| !! | TCAAAAACTTTATCTGAAAA+AGG | - | chr8_2:10178174-10178193 | None:intergenic | 20.0% |
| !!! | AATGAAGTATGTTTTCTTTT+AGG | + | chr8_2:10178249-10178268 | Msa1233390:intron | 20.0% |
| !!! | GTTTGTTTCATAATATGTTT+TGG | + | chr8_2:10178279-10178298 | Msa1233390:intron | 20.0% |
| !!! | ATTTCTTTCTTTTCATGTAA+GGG | + | chr8_2:10177753-10177772 | Msa1233390:intron | 20.0% |
| !!! | TGTTTTGATTAACTTATCTA+AGG | + | chr8_2:10177950-10177969 | Msa1233390:intron | 20.0% |
| !! | TGATATGGTTAAAATTGTTT+AGG | + | chr8_2:10178140-10178159 | Msa1233390:intron | 20.0% |
| !! | TCAAAAACTTTATCTGAAAA+AGG | - | chr8_2:10178174-10178193 | None:intergenic | 20.0% |
| !!! | AATGAAGTATGTTTTCTTTT+AGG | + | chr8_2:10178249-10178268 | Msa1233390:intron | 20.0% |
| !!! | GTTTGTTTCATAATATGTTT+TGG | + | chr8_2:10178279-10178298 | Msa1233390:intron | 20.0% |
| ! | ATGAAAAGAAAGAAATCAGT+TGG | - | chr8_2:10177749-10177768 | None:intergenic | 25.0% |
| !! | GATTTCTTTCTTTTCATGTA+AGG | + | chr8_2:10177752-10177771 | Msa1233390:intron | 25.0% |
| !! | TGAGTTTAGAAAGACTTTTA+AGG | + | chr8_2:10177858-10177877 | Msa1233390:CDS | 25.0% |
| ! | TTGTTTAGTTGAATTGTGTT+TGG | + | chr8_2:10177924-10177943 | Msa1233390:intron | 25.0% |
| ! | ATGTAATGCAAAAACTAGAT+TGG | + | chr8_2:10177994-10178013 | Msa1233390:intron | 25.0% |
| !! | AGATAAAGTTTTTGAACTCA+TGG | + | chr8_2:10178179-10178198 | Msa1233390:CDS | 25.0% |
| ! | ATGAAAAGAAAGAAATCAGT+TGG | - | chr8_2:10177749-10177768 | None:intergenic | 25.0% |
| !! | GATTTCTTTCTTTTCATGTA+AGG | + | chr8_2:10177752-10177771 | Msa1233390:intron | 25.0% |
| !! | TGAGTTTAGAAAGACTTTTA+AGG | + | chr8_2:10177858-10177877 | Msa1233390:CDS | 25.0% |
| ! | TTGTTTAGTTGAATTGTGTT+TGG | + | chr8_2:10177924-10177943 | Msa1233390:intron | 25.0% |
| ! | ATGTAATGCAAAAACTAGAT+TGG | + | chr8_2:10177994-10178013 | Msa1233390:intron | 25.0% |
| !! | AGATAAAGTTTTTGAACTCA+TGG | + | chr8_2:10178179-10178198 | Msa1233390:CDS | 25.0% |
| AAAGGTTAAGGATTCTAATG+CGG | + | chr8_2:10177712-10177731 | Msa1233390:CDS | 30.0% | |
| !!! | TTGTTTGTGCTGTTTTGTAA+TGG | + | chr8_2:10177782-10177801 | Msa1233390:intron | 30.0% |
| ATCTTGATTCAAAGGATGTT+AGG | + | chr8_2:10177887-10177906 | Msa1233390:CDS | 30.0% | |
| ATGCAAAAACTAGATTGGTA+AGG | + | chr8_2:10177999-10178018 | Msa1233390:intron | 30.0% | |
| !!! | TGTTCCGTTTTGATTGAATT+TGG | + | chr8_2:10178078-10178097 | Msa1233390:intron | 30.0% |
| TGCACCAAATTCAATCAAAA+CGG | - | chr8_2:10178085-10178104 | None:intergenic | 30.0% | |
| AGCAACATTATACAATTCCA+TGG | - | chr8_2:10178220-10178239 | None:intergenic | 30.0% | |
| ACTTGATTTCTCTGTTGAAA+TGG | + | chr8_2:10178462-10178481 | Msa1233390:three_prime_UTR | 30.0% | |
| AAAGGTTAAGGATTCTAATG+CGG | + | chr8_2:10177712-10177731 | Msa1233390:CDS | 30.0% | |
| !!! | TTGTTTGTGCTGTTTTGTAA+TGG | + | chr8_2:10177782-10177801 | Msa1233390:intron | 30.0% |
| ATCTTGATTCAAAGGATGTT+AGG | + | chr8_2:10177887-10177906 | Msa1233390:CDS | 30.0% | |
| ATGCAAAAACTAGATTGGTA+AGG | + | chr8_2:10177999-10178018 | Msa1233390:intron | 30.0% | |
| !!! | TGTTCCGTTTTGATTGAATT+TGG | + | chr8_2:10178078-10178097 | Msa1233390:intron | 30.0% |
| TGCACCAAATTCAATCAAAA+CGG | - | chr8_2:10178085-10178104 | None:intergenic | 30.0% | |
| AGCAACATTATACAATTCCA+TGG | - | chr8_2:10178220-10178239 | None:intergenic | 30.0% | |
| ACTTGATTTCTCTGTTGAAA+TGG | + | chr8_2:10178462-10178481 | Msa1233390:three_prime_UTR | 30.0% | |
| !! | GCAGTTGGTTCTTTTGAATT+TGG | - | chr8_2:10177665-10177684 | None:intergenic | 35.0% |
| TAAAGTTGGGAAAGGGAAAA+AGG | + | chr8_2:10177694-10177713 | Msa1233390:CDS | 35.0% | |
| !!! | TGTGCTGTTTTGTAATGGTT+TGG | + | chr8_2:10177787-10177806 | Msa1233390:intron | 35.0% |
| !! | TGGTTTGGTTCTATAGTTTG+AGG | + | chr8_2:10177802-10177821 | Msa1233390:intron | 35.0% |
| !! | GGTTTGGTTCTATAGTTTGA+GGG | + | chr8_2:10177803-10177822 | Msa1233390:intron | 35.0% |
| !!! | GTTTGAGGGTTTTAGTTGAT+TGG | + | chr8_2:10177817-10177836 | Msa1233390:intron | 35.0% |
| !! | TGATTGGTTTGATTTGTTGC+AGG | + | chr8_2:10177833-10177852 | Msa1233390:intron | 35.0% |
| !! | GATTGGTTTGATTTGTTGCA+GGG | + | chr8_2:10177834-10177853 | Msa1233390:intron | 35.0% |
| GGAAGCTAATCTTGATTCAA+AGG | + | chr8_2:10177879-10177898 | Msa1233390:CDS | 35.0% | |
| TTGATTCAAAGGATGTTAGG+AGG | + | chr8_2:10177890-10177909 | Msa1233390:CDS | 35.0% | |
| TGATTCAAAGGATGTTAGGA+GGG | + | chr8_2:10177891-10177910 | Msa1233390:CDS | 35.0% | |
| GTGTTATGTTTATGTGATGC+TGG | + | chr8_2:10178107-10178126 | Msa1233390:intron | 35.0% | |
| ! | TTTATGTGATGCTGGTCTAA+TGG | + | chr8_2:10178115-10178134 | Msa1233390:intron | 35.0% |
| GCTATATGTTTGTTCAGGAT+CGG | + | chr8_2:10178331-10178350 | Msa1233390:intron | 35.0% | |
| CTATATGTTTGTTCAGGATC+GGG | + | chr8_2:10178332-10178351 | Msa1233390:intron | 35.0% | |
| CTGTTGAAATGGCTTGATTT+AGG | + | chr8_2:10178473-10178492 | Msa1233390:three_prime_UTR | 35.0% | |
| !! | GCAGTTGGTTCTTTTGAATT+TGG | - | chr8_2:10177665-10177684 | None:intergenic | 35.0% |
| TAAAGTTGGGAAAGGGAAAA+AGG | + | chr8_2:10177694-10177713 | Msa1233390:CDS | 35.0% | |
| !!! | TGTGCTGTTTTGTAATGGTT+TGG | + | chr8_2:10177787-10177806 | Msa1233390:intron | 35.0% |
| !! | TGGTTTGGTTCTATAGTTTG+AGG | + | chr8_2:10177802-10177821 | Msa1233390:intron | 35.0% |
| !! | GGTTTGGTTCTATAGTTTGA+GGG | + | chr8_2:10177803-10177822 | Msa1233390:intron | 35.0% |
| !!! | GTTTGAGGGTTTTAGTTGAT+TGG | + | chr8_2:10177817-10177836 | Msa1233390:intron | 35.0% |
| !! | TGATTGGTTTGATTTGTTGC+AGG | + | chr8_2:10177833-10177852 | Msa1233390:intron | 35.0% |
| !! | GATTGGTTTGATTTGTTGCA+GGG | + | chr8_2:10177834-10177853 | Msa1233390:intron | 35.0% |
| GGAAGCTAATCTTGATTCAA+AGG | + | chr8_2:10177879-10177898 | Msa1233390:CDS | 35.0% | |
| TTGATTCAAAGGATGTTAGG+AGG | + | chr8_2:10177890-10177909 | Msa1233390:CDS | 35.0% | |
| TGATTCAAAGGATGTTAGGA+GGG | + | chr8_2:10177891-10177910 | Msa1233390:CDS | 35.0% | |
| GTGTTATGTTTATGTGATGC+TGG | + | chr8_2:10178107-10178126 | Msa1233390:intron | 35.0% | |
| ! | TTTATGTGATGCTGGTCTAA+TGG | + | chr8_2:10178115-10178134 | Msa1233390:intron | 35.0% |
| GCTATATGTTTGTTCAGGAT+CGG | + | chr8_2:10178331-10178350 | Msa1233390:intron | 35.0% | |
| CTATATGTTTGTTCAGGATC+GGG | + | chr8_2:10178332-10178351 | Msa1233390:intron | 35.0% | |
| CTGTTGAAATGGCTTGATTT+AGG | + | chr8_2:10178473-10178492 | Msa1233390:three_prime_UTR | 35.0% | |
| CAAAAGAACCAACTGCGAAA+CGG | + | chr8_2:10177669-10177688 | Msa1233390:CDS | 40.0% | |
| !! | AAACGGACTAAAGTTGGGAA+AGG | + | chr8_2:10177686-10177705 | Msa1233390:CDS | 40.0% |
| !! | AACGGACTAAAGTTGGGAAA+GGG | + | chr8_2:10177687-10177706 | Msa1233390:CDS | 40.0% |
| TGGGAAAGGGAAAAAGGTTA+AGG | + | chr8_2:10177700-10177719 | Msa1233390:CDS | 40.0% | |
| ! | GCTGGTCTAATGGTATGATA+TGG | + | chr8_2:10178125-10178144 | Msa1233390:intron | 40.0% |
| ACTCATGGCAGAATATGAGA+AGG | + | chr8_2:10178194-10178213 | Msa1233390:CDS | 40.0% | |
| !!! | TTTGCTCTCTTTTCTGAAGC+TGG | + | chr8_2:10178307-10178326 | Msa1233390:intron | 40.0% |
| !! | CTGGTGCTATATGTTTGTTC+AGG | + | chr8_2:10178326-10178345 | Msa1233390:intron | 40.0% |
| AGAAGGCCAATCTGATGATA+AGG | + | chr8_2:10178368-10178387 | Msa1233390:CDS | 40.0% | |
| AGTTAACAGATGAGGAGTAG+TGG | + | chr8_2:10178418-10178437 | Msa1233390:CDS | 40.0% | |
| CAAAAGAACCAACTGCGAAA+CGG | + | chr8_2:10177669-10177688 | Msa1233390:CDS | 40.0% | |
| !! | AAACGGACTAAAGTTGGGAA+AGG | + | chr8_2:10177686-10177705 | Msa1233390:CDS | 40.0% |
| !! | AACGGACTAAAGTTGGGAAA+GGG | + | chr8_2:10177687-10177706 | Msa1233390:CDS | 40.0% |
| TGGGAAAGGGAAAAAGGTTA+AGG | + | chr8_2:10177700-10177719 | Msa1233390:CDS | 40.0% | |
| ! | GCTGGTCTAATGGTATGATA+TGG | + | chr8_2:10178125-10178144 | Msa1233390:intron | 40.0% |
| ACTCATGGCAGAATATGAGA+AGG | + | chr8_2:10178194-10178213 | Msa1233390:CDS | 40.0% | |
| !!! | TTTGCTCTCTTTTCTGAAGC+TGG | + | chr8_2:10178307-10178326 | Msa1233390:intron | 40.0% |
| !! | CTGGTGCTATATGTTTGTTC+AGG | + | chr8_2:10178326-10178345 | Msa1233390:intron | 40.0% |
| AGAAGGCCAATCTGATGATA+AGG | + | chr8_2:10178368-10178387 | Msa1233390:CDS | 40.0% | |
| AGTTAACAGATGAGGAGTAG+TGG | + | chr8_2:10178418-10178437 | Msa1233390:CDS | 40.0% | |
| ACTTTAGTCCGTTTCGCAGT+TGG | - | chr8_2:10177680-10177699 | None:intergenic | 45.0% | |
| !! | ACTGCGAAACGGACTAAAGT+TGG | + | chr8_2:10177680-10177699 | Msa1233390:CDS | 45.0% |
| !! | CTGCGAAACGGACTAAAGTT+GGG | + | chr8_2:10177681-10177700 | Msa1233390:CDS | 45.0% |
| GTAAGGAAGATTGCGAGAAG+TGG | + | chr8_2:10178016-10178035 | Msa1233390:CDS | 45.0% | |
| TATGTTTGTTCAGGATCGGG+AGG | + | chr8_2:10178335-10178354 | Msa1233390:intron | 45.0% | |
| CGGGAGGAATCTGATAAAGA+AGG | + | chr8_2:10178351-10178370 | Msa1233390:CDS | 45.0% | |
| GGGCTTCCTTATCATCAGAT+TGG | - | chr8_2:10178377-10178396 | None:intergenic | 45.0% | |
| GACGGAAGAGTTAACAGATG+AGG | + | chr8_2:10178410-10178429 | Msa1233390:CDS | 45.0% | |
| ACTTTAGTCCGTTTCGCAGT+TGG | - | chr8_2:10177680-10177699 | None:intergenic | 45.0% | |
| !! | ACTGCGAAACGGACTAAAGT+TGG | + | chr8_2:10177680-10177699 | Msa1233390:CDS | 45.0% |
| !! | CTGCGAAACGGACTAAAGTT+GGG | + | chr8_2:10177681-10177700 | Msa1233390:CDS | 45.0% |
| GTAAGGAAGATTGCGAGAAG+TGG | + | chr8_2:10178016-10178035 | Msa1233390:CDS | 45.0% | |
| TATGTTTGTTCAGGATCGGG+AGG | + | chr8_2:10178335-10178354 | Msa1233390:intron | 45.0% | |
| CGGGAGGAATCTGATAAAGA+AGG | + | chr8_2:10178351-10178370 | Msa1233390:CDS | 45.0% | |
| GGGCTTCCTTATCATCAGAT+TGG | - | chr8_2:10178377-10178396 | None:intergenic | 45.0% | |
| GACGGAAGAGTTAACAGATG+AGG | + | chr8_2:10178410-10178429 | Msa1233390:CDS | 45.0% | |
| AGGAAGATTGCGAGAAGTGG+AGG | + | chr8_2:10178019-10178038 | Msa1233390:CDS | 50.0% | |
| GAAGTGGAGGTCTTTGACTG+AGG | + | chr8_2:10178032-10178051 | Msa1233390:CDS | 50.0% | |
| GGCAGAATATGAGAAGGCCA+TGG | + | chr8_2:10178200-10178219 | Msa1233390:CDS | 50.0% | |
| GTTAACTCTTCCGTCTCTCC+TGG | - | chr8_2:10178405-10178424 | None:intergenic | 50.0% | |
| ! | GAGGAGTAGTGGTAGCGTTT+CGG | + | chr8_2:10178429-10178448 | Msa1233390:exon | 50.0% |
| AGGAAGATTGCGAGAAGTGG+AGG | + | chr8_2:10178019-10178038 | Msa1233390:CDS | 50.0% | |
| GAAGTGGAGGTCTTTGACTG+AGG | + | chr8_2:10178032-10178051 | Msa1233390:CDS | 50.0% | |
| GGCAGAATATGAGAAGGCCA+TGG | + | chr8_2:10178200-10178219 | Msa1233390:CDS | 50.0% | |
| GTTAACTCTTCCGTCTCTCC+TGG | - | chr8_2:10178405-10178424 | None:intergenic | 50.0% | |
| ! | GAGGAGTAGTGGTAGCGTTT+CGG | + | chr8_2:10178429-10178448 | Msa1233390:exon | 50.0% |
| GATAAGGAAGCCCCTGCACC+AGG | + | chr8_2:10178384-10178403 | Msa1233390:CDS | 60.0% | |
| TTCCGTCTCTCCTGGTGCAG+GGG | - | chr8_2:10178397-10178416 | None:intergenic | 60.0% | |
| CTTCCGTCTCTCCTGGTGCA+GGG | - | chr8_2:10178398-10178417 | None:intergenic | 60.0% | |
| TCTTCCGTCTCTCCTGGTGC+AGG | - | chr8_2:10178399-10178418 | None:intergenic | 60.0% | |
| GATAAGGAAGCCCCTGCACC+AGG | + | chr8_2:10178384-10178403 | Msa1233390:CDS | 60.0% | |
| TTCCGTCTCTCCTGGTGCAG+GGG | - | chr8_2:10178397-10178416 | None:intergenic | 60.0% | |
| CTTCCGTCTCTCCTGGTGCA+GGG | - | chr8_2:10178398-10178417 | None:intergenic | 60.0% | |
| TCTTCCGTCTCTCCTGGTGC+AGG | - | chr8_2:10178399-10178418 | None:intergenic | 60.0% | |
| AGCCCCTGCACCAGGAGAGA+CGG | + | chr8_2:10178392-10178411 | Msa1233390:CDS | 65.0% | |
| AGCCCCTGCACCAGGAGAGA+CGG | + | chr8_2:10178392-10178411 | Msa1233390:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 10177644 | 10178513 | 10177644 | ID=Msa1233390;Name=Msa1233390 |
| chr8_2 | mRNA | 10177644 | 10178513 | 10177644 | ID=Msa1233390-mRNA-1;Parent=Msa1233390;Name=Msa1233390-mRNA-1;_AED=0.25;_eAED=0.24;_QI=0|0.25|0.2|1|1|1|5|76|136 |
| chr8_2 | exon | 10177644 | 10177768 | 10177644 | ID=Msa1233390-mRNA-1:exon:3963;Parent=Msa1233390-mRNA-1 |
| chr8_2 | exon | 10177855 | 10177912 | 10177855 | ID=Msa1233390-mRNA-1:exon:3964;Parent=Msa1233390-mRNA-1 |
| chr8_2 | exon | 10178012 | 10178056 | 10178012 | ID=Msa1233390-mRNA-1:exon:3965;Parent=Msa1233390-mRNA-1 |
| chr8_2 | exon | 10178162 | 10178254 | 10178162 | ID=Msa1233390-mRNA-1:exon:3966;Parent=Msa1233390-mRNA-1 |
| chr8_2 | exon | 10178348 | 10178513 | 10178348 | ID=Msa1233390-mRNA-1:exon:3967;Parent=Msa1233390-mRNA-1 |
| chr8_2 | CDS | 10177644 | 10177768 | 10177644 | ID=Msa1233390-mRNA-1:cds;Parent=Msa1233390-mRNA-1 |
| chr8_2 | CDS | 10177855 | 10177912 | 10177855 | ID=Msa1233390-mRNA-1:cds;Parent=Msa1233390-mRNA-1 |
| chr8_2 | CDS | 10178012 | 10178056 | 10178012 | ID=Msa1233390-mRNA-1:cds;Parent=Msa1233390-mRNA-1 |
| chr8_2 | CDS | 10178162 | 10178254 | 10178162 | ID=Msa1233390-mRNA-1:cds;Parent=Msa1233390-mRNA-1 |
| chr8_2 | CDS | 10178348 | 10178437 | 10178348 | ID=Msa1233390-mRNA-1:cds;Parent=Msa1233390-mRNA-1 |
| chr8_2 | three_prime_UTR | 10178438 | 10178513 | 10178438 | ID=Msa1233390-mRNA-1:three_prime_utr;Parent=Msa1233390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
