Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1233540 | XP_003627170.1 | 83.279 | 305 | 32 | 4 | 1 | 305 | 1 | 286 | 3.72e-170 | 483 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1233540 | sp|F4IEY4|TRB5_ARATH | 42.718 | 309 | 145 | 7 | 1 | 302 | 1 | 284 | 7.08e-65 | 208 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa1233540 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1233540 | MtrunA17_Chr8g0342871 | 83.279 | 305 | 32 | 4 | 1 | 305 | 1 | 286 | 3.42e-174 | 483 |
| Msa1233540 | MtrunA17_Chr2g0329921 | 47.937 | 315 | 140 | 8 | 1 | 304 | 1 | 302 | 6.61e-84 | 254 |
| Msa1233540 | MtrunA17_Chr8g0384671 | 38.710 | 217 | 113 | 5 | 1 | 216 | 1 | 198 | 3.92e-35 | 129 |
| Msa1233540 | MtrunA17_Chr4g0054131 | 38.835 | 206 | 109 | 5 | 1 | 197 | 1 | 198 | 3.11e-34 | 126 |
| Msa1233540 | MtrunA17_Chr2g0293381 | 40.102 | 197 | 108 | 5 | 1 | 197 | 1 | 187 | 2.90e-33 | 124 |
| Msa1233540 | MtrunA17_Chr5g0401061 | 38.191 | 199 | 105 | 4 | 1 | 197 | 1 | 183 | 4.14e-33 | 123 |
| Msa1233540 | MtrunA17_Chr1g0166681 | 55.556 | 63 | 28 | 0 | 1 | 63 | 1 | 63 | 1.38e-18 | 82.0 |
| Msa1233540 | MtrunA17_Chr8g0383821 | 60.345 | 58 | 23 | 0 | 1 | 58 | 1 | 58 | 5.56e-18 | 79.0 |
| Msa1233540 | MtrunA17_Chr7g0260771 | 43.939 | 66 | 36 | 1 | 133 | 197 | 63 | 128 | 6.81e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1233540 | AT1G72740.2 | 43.564 | 303 | 145 | 6 | 1 | 302 | 1 | 278 | 2.87e-68 | 214 |
| Msa1233540 | AT1G72740.1 | 42.718 | 309 | 145 | 7 | 1 | 302 | 1 | 284 | 7.19e-66 | 208 |
| Msa1233540 | AT1G17520.4 | 42.949 | 312 | 143 | 5 | 1 | 302 | 1 | 287 | 8.85e-65 | 206 |
| Msa1233540 | AT1G17520.3 | 42.812 | 313 | 143 | 6 | 1 | 302 | 1 | 288 | 4.08e-63 | 201 |
| Msa1233540 | AT1G17520.1 | 42.138 | 318 | 143 | 6 | 1 | 302 | 1 | 293 | 1.92e-62 | 200 |
| Msa1233540 | AT1G17520.2 | 42.006 | 319 | 143 | 7 | 1 | 302 | 1 | 294 | 1.28e-60 | 195 |
| Msa1233540 | AT1G49950.3 | 37.186 | 199 | 107 | 6 | 1 | 197 | 1 | 183 | 1.16e-29 | 114 |
| Msa1233540 | AT1G49950.1 | 37.186 | 199 | 107 | 6 | 1 | 197 | 1 | 183 | 1.16e-29 | 114 |
| Msa1233540 | AT1G49950.2 | 37.186 | 199 | 107 | 6 | 1 | 197 | 1 | 183 | 1.16e-29 | 114 |
| Msa1233540 | AT3G49850.1 | 34.158 | 202 | 115 | 3 | 1 | 199 | 1 | 187 | 2.25e-28 | 111 |
| Msa1233540 | AT3G49850.2 | 34.158 | 202 | 115 | 3 | 1 | 199 | 1 | 187 | 2.25e-28 | 111 |
| Msa1233540 | AT5G67580.2 | 34.518 | 197 | 119 | 3 | 1 | 197 | 1 | 187 | 2.07e-25 | 103 |
| Msa1233540 | AT5G67580.1 | 34.518 | 197 | 119 | 3 | 1 | 197 | 1 | 187 | 2.07e-25 | 103 |
| Msa1233540 | AT1G54260.1 | 33.161 | 193 | 109 | 3 | 130 | 302 | 2 | 194 | 2.71e-22 | 92.4 |
| Msa1233540 | AT1G54240.1 | 28.736 | 174 | 113 | 5 | 136 | 302 | 57 | 226 | 6.39e-11 | 61.6 |
Find 64 sgRNAs with CRISPR-Local
Find 287 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAAGCAGTAGAAAATTTA+AGG | 0.122041 | 8_2:-10328156 | None:intergenic |
| ACCAAATCTTGTTTGGATAT+TGG | 0.202357 | 8_2:-10328187 | Msa1233540:three_prime_UTR |
| TTTGGTTTGTTTAGGATAAA+TGG | 0.205337 | 8_2:-10332178 | Msa1233540:intron |
| TGAAGCTCTGACTACATTAA+AGG | 0.241020 | 8_2:-10330332 | Msa1233540:CDS |
| AAAGACATGGCCCTGGTAAA+TGG | 0.273347 | 8_2:-10332341 | Msa1233540:CDS |
| AAAATTTGTAGTCCAGTAAA+TGG | 0.305217 | 8_2:-10328300 | Msa1233540:three_prime_UTR |
| TCCAATATCCAAACAAGATT+TGG | 0.310364 | 8_2:+10328186 | None:intergenic |
| CAAGACTACCAAATCTTGTT+TGG | 0.311601 | 8_2:-10328194 | Msa1233540:three_prime_UTR |
| GAGACTGATGATTGCCGTTT+CGG | 0.334617 | 8_2:+10328692 | None:intergenic |
| AAGTTGTCAACACCATTTAC+TGG | 0.336743 | 8_2:+10328288 | None:intergenic |
| AGCAGCAGCAGGTTTGCATT+TGG | 0.345557 | 8_2:+10332112 | None:intergenic |
| AACTGAAAACAAATCATATC+TGG | 0.352692 | 8_2:-10328600 | Msa1233540:CDS |
| GCAGCAGCAGGTTTGCATTT+GGG | 0.359093 | 8_2:+10332113 | None:intergenic |
| CAAGATAAAAGAAGCCTTGT+TGG | 0.360419 | 8_2:-10328786 | Msa1233540:CDS |
| TGGGAAATCAAAAGCTGAAA+TGG | 0.385077 | 8_2:-10332401 | Msa1233540:CDS |
| ACAGGAGCAGCAGCAGGAAC+AGG | 0.428758 | 8_2:+10332077 | None:intergenic |
| ACTACATTAAAGGATACTAA+TGG | 0.429817 | 8_2:-10330322 | Msa1233540:CDS |
| TGCGCGGTGAAACTATCAAA+TGG | 0.448048 | 8_2:-10328385 | Msa1233540:CDS |
| ACATTGTTCATAAAGTTGTT+CGG | 0.449895 | 8_2:+10328505 | None:intergenic |
| GAAGAAACAGGAGCAGCAGC+AGG | 0.455772 | 8_2:+10332071 | None:intergenic |
| TTTATCAGATTCCTTTAGTA+GGG | 0.463946 | 8_2:-10328251 | Msa1233540:three_prime_UTR |
| ATAATATTACTCAAGTTCCT+AGG | 0.465364 | 8_2:-10332139 | Msa1233540:CDS |
| CAGCAAAACAAAAGGTGGTC+AGG | 0.470148 | 8_2:-10328715 | Msa1233540:CDS |
| ATTCTCCTTGACCCTCAGTT+CGG | 0.477510 | 8_2:-10332312 | Msa1233540:CDS |
| AGAATGGCTTTCCATTTACC+AGG | 0.481104 | 8_2:+10332330 | None:intergenic |
| GCAGCACTGGAAGAAGAAAC+AGG | 0.483242 | 8_2:+10332059 | None:intergenic |
| ATCACCTTCACCAAAACAAA+AGG | 0.490999 | 8_2:-10328756 | Msa1233540:CDS |
| AAAAGGTGGTCAGGCCGAAA+CGG | 0.494784 | 8_2:-10328706 | Msa1233540:CDS |
| GAACTGAGGGTCAAGGAGAA+TGG | 0.501381 | 8_2:+10332314 | None:intergenic |
| GGAGGAACAATTTGAAGAGG+AGG | 0.508616 | 8_2:+10331981 | None:intergenic |
| GAAGAAGACGCTCTTATCGC+TGG | 0.509747 | 8_2:-10332369 | Msa1233540:CDS |
| TACATGAGTTTCCCTACTAA+AGG | 0.515232 | 8_2:+10328240 | None:intergenic |
| ACTATCAAATGGGCTTAAGA+TGG | 0.517884 | 8_2:-10328374 | Msa1233540:exon |
| GCGCGGTGAAACTATCAAAT+GGG | 0.518902 | 8_2:-10328384 | Msa1233540:CDS |
| AGTCACTGACTGCAAGGTTG+AGG | 0.520186 | 8_2:-10329951 | Msa1233540:CDS |
| TGCCATTGCTAGTTTCATTG+AGG | 0.522914 | 8_2:-10330287 | Msa1233540:intron |
| ATCACCTTCAGCAAAACAAA+AGG | 0.539850 | 8_2:-10328723 | Msa1233540:CDS |
| TTGAGGATGCTTGTGAGTCA+AGG | 0.546963 | 8_2:-10329934 | Msa1233540:CDS |
| GGTAACCTTGAGGTCGATGT+TGG | 0.557186 | 8_2:+10332269 | None:intergenic |
| TCAGAAAGTCACTGACTGCA+AGG | 0.561065 | 8_2:-10329957 | Msa1233540:CDS |
| TTAACAACAACATCAGAAGA+AGG | 0.563592 | 8_2:+10332014 | None:intergenic |
| GAGTCAAGGGAAGCTTGAAA+AGG | 0.565631 | 8_2:-10329920 | Msa1233540:intron |
| ATTGCTGCAGCAAAAGCATC+CGG | 0.566445 | 8_2:-10329992 | Msa1233540:intron |
| GGTTTGCATTTGGGAAACCT+AGG | 0.568248 | 8_2:+10332122 | None:intergenic |
| TCGTTCCAACATCGACCTCA+AGG | 0.571236 | 8_2:-10332274 | Msa1233540:intron |
| GGAGGAGGAACAATTTGAAG+AGG | 0.571972 | 8_2:+10331978 | None:intergenic |
| TGAGGATGCTTGTGAGTCAA+GGG | 0.572315 | 8_2:-10329933 | Msa1233540:CDS |
| CAAATCATATCTGGCAACTG+AGG | 0.579566 | 8_2:-10328591 | Msa1233540:CDS |
| TCTATTTATGCAGGTTTGCG+CGG | 0.584806 | 8_2:-10328401 | Msa1233540:intron |
| TCTGGCAACTGAGGCAGTCA+AGG | 0.592576 | 8_2:-10328582 | Msa1233540:CDS |
| TTTGGATATTGGACCCAAAG+TGG | 0.596046 | 8_2:-10328176 | Msa1233540:three_prime_UTR |
| TTGGAACGAGAAGTGAGTAA+AGG | 0.596141 | 8_2:+10332288 | None:intergenic |
| GGAATCGAAAGACATGGCCC+TGG | 0.601309 | 8_2:-10332348 | Msa1233540:CDS |
| AGTCTCTGATGATATGCTGA+AGG | 0.602271 | 8_2:-10328657 | Msa1233540:CDS |
| GGTTTGTTTAGGATAAATGG+AGG | 0.604249 | 8_2:-10332175 | Msa1233540:intron |
| ACCTTCAGCAAAACAAAAGG+TGG | 0.623190 | 8_2:-10328720 | Msa1233540:CDS |
| AACCTCAATGAAACTAGCAA+TGG | 0.624133 | 8_2:+10330285 | None:intergenic |
| AAGGACCGAACTGAGGGTCA+AGG | 0.625130 | 8_2:+10332307 | None:intergenic |
| ACCTTCACCAAAACAAAAGG+AGG | 0.631938 | 8_2:-10328753 | Msa1233540:CDS |
| TGAGTAAAGGACCGAACTGA+GGG | 0.636132 | 8_2:+10332301 | None:intergenic |
| GAATGGCTTTCCATTTACCA+GGG | 0.646220 | 8_2:+10332331 | None:intergenic |
| GTGAGTAAAGGACCGAACTG+AGG | 0.646832 | 8_2:+10332300 | None:intergenic |
| ACTAGCAATGGCATTTACGT+CGG | 0.664174 | 8_2:+10330297 | None:intergenic |
| ATCGCTGGAATCGAAAGACA+TGG | 0.677427 | 8_2:-10332354 | Msa1233540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAATTTTTAATATTTTT+TGG | - | chr8_2:10328436-10328455 | Msa1233540:intron | 0.0% |
| !!! | CTAAGTTTTTTTTATTTTTT+TGG | + | chr8_2:10328919-10328938 | None:intergenic | 10.0% |
| !!! | ATTATAAATGTTTTGTTAAA+AGG | - | chr8_2:10329799-10329818 | Msa1233540:intron | 10.0% |
| !!! | TTATAAATGTTTTGTTAAAA+GGG | - | chr8_2:10329800-10329819 | Msa1233540:intron | 10.0% |
| !! | ACTAAAAGTTTAATTAAATT+TGG | + | chr8_2:10329995-10330014 | None:intergenic | 10.0% |
| !! | TTAATATATCAGATTATATT+AGG | - | chr8_2:10330231-10330250 | Msa1233540:intron | 10.0% |
| !!! | TAATATTTTTTGGTTTGTTT+AGG | - | chr8_2:10328446-10328465 | Msa1233540:intron | 15.0% |
| !! | ATATAAGAATTAAAATACCT+AGG | + | chr8_2:10328717-10328736 | None:intergenic | 15.0% |
| !! | TAATGATTCTTTACATTTAT+TGG | - | chr8_2:10329720-10329739 | Msa1233540:intron | 15.0% |
| !! | AAAACATTTATAATACTTAC+AGG | + | chr8_2:10329793-10329812 | None:intergenic | 15.0% |
| !!! | TTTAATTAAATTTGGTGAAA+CGG | + | chr8_2:10329987-10330006 | None:intergenic | 15.0% |
| !! | AAATAAAATATTGTTGAGTG+AGG | - | chr8_2:10329147-10329166 | Msa1233540:intron | 20.0% |
| !! | AATAAAATATTGTTGAGTGA+GGG | - | chr8_2:10329148-10329167 | Msa1233540:intron | 20.0% |
| !! | AGAGTTTATTCAAGATTTAT+TGG | - | chr8_2:10329316-10329335 | Msa1233540:intron | 20.0% |
| !!! | ACAATATCTTTGTTTCATAA+GGG | + | chr8_2:10329939-10329958 | None:intergenic | 20.0% |
| !!! | TACAATATCTTTGTTTCATA+AGG | + | chr8_2:10329940-10329959 | None:intergenic | 20.0% |
| !!! | TTAATTAAATTTGGTGAAAC+GGG | + | chr8_2:10329986-10330005 | None:intergenic | 20.0% |
| !!! | ACTTTTAGTTCTTATATATG+TGG | - | chr8_2:10330006-10330025 | Msa1233540:intron | 20.0% |
| !!! | TTCTTTTGCTATTAATTTGA+TGG | - | chr8_2:10330173-10330192 | Msa1233540:intron | 20.0% |
| !! | ATCAGATTATATTAGGTTAT+TGG | - | chr8_2:10330238-10330257 | Msa1233540:intron | 20.0% |
| !! | TATTGTTAAATCATGTTGTT+TGG | - | chr8_2:10330818-10330837 | Msa1233540:intron | 20.0% |
| !! | CAAATTATGCAAAGAAATTT+AGG | + | chr8_2:10331661-10331680 | None:intergenic | 20.0% |
| !! | CTAAATTTCTTTGCATAATT+TGG | - | chr8_2:10331659-10331678 | Msa1233540:intron | 20.0% |
| !! | TTTTGTTGAATGTGAAGAAT+GGG | - | chr8_2:10328212-10328231 | Msa1233540:three_prime_UTR | 25.0% |
| !!! | TTTGGTTTGTTTAGGATAAA+TGG | - | chr8_2:10328454-10328473 | Msa1233540:intron | 25.0% |
| ! | ATAATATTACTCAAGTTCCT+AGG | - | chr8_2:10328493-10328512 | Msa1233540:intron | 25.0% |
| !!! | TGTTGTTTTTAACAACATCT+TGG | + | chr8_2:10328692-10328711 | None:intergenic | 25.0% |
| ! | ATCACTATGTTGTAACAATA+TGG | + | chr8_2:10329009-10329028 | None:intergenic | 25.0% |
| ! | ATTGTTACAACATAGTGATT+TGG | - | chr8_2:10329010-10329029 | Msa1233540:intron | 25.0% |
| ! | TACAAAATGTTGTCAAATAG+CGG | + | chr8_2:10329426-10329445 | None:intergenic | 25.0% |
| ! | ATTATGACTCTGTAGTTAAA+AGG | - | chr8_2:10329640-10329659 | Msa1233540:intron | 25.0% |
| !! | AATATCTTTGTTTCATAAGG+GGG | + | chr8_2:10329937-10329956 | None:intergenic | 25.0% |
| !! | CAATATCTTTGTTTCATAAG+GGG | + | chr8_2:10329938-10329957 | None:intergenic | 25.0% |
| !! | GGTTTTTAAATTGATCCTAT+AGG | - | chr8_2:10330050-10330069 | Msa1233540:intron | 25.0% |
| !! | GTACTTTTGTTCCTTTTATT+AGG | - | chr8_2:10330260-10330279 | Msa1233540:intron | 25.0% |
| ! | ATGACATCATACCTAATAAA+AGG | + | chr8_2:10330274-10330293 | None:intergenic | 25.0% |
| ! | ACTACATTAAAGGATACTAA+TGG | - | chr8_2:10330310-10330329 | Msa1233540:CDS | 25.0% |
| ! | TTGCATAATCTCAAAAAACA+GGG | + | chr8_2:10330447-10330466 | None:intergenic | 25.0% |
| ! | ATTGCATAATCTCAAAAAAC+AGG | + | chr8_2:10330448-10330467 | None:intergenic | 25.0% |
| ! | ATATCAACTACTAGAATGAA+TGG | - | chr8_2:10330479-10330498 | Msa1233540:intron | 25.0% |
| !! | TAATTTTCCTTGATGTAACT+TGG | - | chr8_2:10330511-10330530 | Msa1233540:intron | 25.0% |
| !! | ACTTGGAAAACTAGTTTATA+TGG | - | chr8_2:10330528-10330547 | Msa1233540:intron | 25.0% |
| ! | TTTGTATTGAGTATTCTACA+TGG | - | chr8_2:10330575-10330594 | Msa1233540:intron | 25.0% |
| !! | ATTTGAACGTGTATTTTACT+TGG | - | chr8_2:10330792-10330811 | Msa1233540:intron | 25.0% |
| ! | ACAGACACTAAAAAATACAA+GGG | + | chr8_2:10330937-10330956 | None:intergenic | 25.0% |
| ! | TTTATGTATTCAAGATCTCT+TGG | - | chr8_2:10331030-10331049 | Msa1233540:intron | 25.0% |
| !! | TGGTTAATTTGGAAACTTAT+AGG | - | chr8_2:10331050-10331069 | Msa1233540:intron | 25.0% |
| !! | TCAAGTTCTAATGAATATGA+TGG | + | chr8_2:10331275-10331294 | None:intergenic | 25.0% |
| !! | AACTTGAATTCTTTGAAAGA+GGG | - | chr8_2:10331288-10331307 | Msa1233540:intron | 25.0% |
| ! | TCACAAAAGTTGTCAAAAAA+TGG | + | chr8_2:10331570-10331589 | None:intergenic | 25.0% |
| ! | AACAAACTTCAAGATATTTC+AGG | + | chr8_2:10331748-10331767 | None:intergenic | 25.0% |
| ! | AACTGAAAACAAATCATATC+TGG | - | chr8_2:10332032-10332051 | Msa1233540:CDS | 25.0% |
| ! | ACATTGTTCATAAAGTTGTT+CGG | + | chr8_2:10332130-10332149 | None:intergenic | 25.0% |
| ! | AATTATAACCATTGATCTTG+TGG | - | chr8_2:10332207-10332226 | Msa1233540:intron | 25.0% |
| ! | ATTATAACCATTGATCTTGT+GGG | - | chr8_2:10332208-10332227 | Msa1233540:intron | 25.0% |
| ! | AAAATTTGTAGTCCAGTAAA+TGG | - | chr8_2:10332332-10332351 | Msa1233540:CDS | 25.0% |
| !! | TTTTATCAGATTCCTTTAGT+AGG | - | chr8_2:10332380-10332399 | Msa1233540:CDS | 25.0% |
| ! | TTTATCAGATTCCTTTAGTA+GGG | - | chr8_2:10332381-10332400 | Msa1233540:CDS | 25.0% |
| !! | GTTTTGTTGAATGTGAAGAA+TGG | - | chr8_2:10328211-10328230 | Msa1233540:three_prime_UTR | 30.0% |
| TTAACAACAACATCAGAAGA+AGG | + | chr8_2:10328621-10328640 | None:intergenic | 30.0% | |
| TTGTTAAAAACAACACACCT+AGG | - | chr8_2:10328697-10328716 | Msa1233540:CDS | 30.0% | |
| ! | GTTGTGAGGAAATTTTATGT+GGG | - | chr8_2:10329032-10329051 | Msa1233540:intron | 30.0% |
| AAATAAACACACGCACTAAA+GGG | + | chr8_2:10329090-10329109 | None:intergenic | 30.0% | |
| TTGTTAAATAGCAGCTATAG+AGG | + | chr8_2:10329514-10329533 | None:intergenic | 30.0% | |
| ! | CTATAGCTGCTATTTAACAA+CGG | - | chr8_2:10329514-10329533 | Msa1233540:intron | 30.0% |
| ! | AGTTAAAAGGCTTTTGTACT+CGG | - | chr8_2:10329653-10329672 | Msa1233540:intron | 30.0% |
| CTTTACATTTATTGGATGAC+TGG | - | chr8_2:10329728-10329747 | Msa1233540:intron | 30.0% | |
| !! | TGTTTTGTTAAAAGGGTAGA+AGG | - | chr8_2:10329807-10329826 | Msa1233540:intron | 30.0% |
| !! | ATTAGAGCATCATTTTGTAC+TGG | - | chr8_2:10329835-10329854 | Msa1233540:intron | 30.0% |
| !! | TTAGAGCATCATTTTGTACT+GGG | - | chr8_2:10329836-10329855 | Msa1233540:intron | 30.0% |
| ! | TAGTTTTCCAAGTTACATCA+AGG | + | chr8_2:10330521-10330540 | None:intergenic | 30.0% |
| !!! | TTTCTGAAATTTTGAGGAAC+CGG | + | chr8_2:10330662-10330681 | None:intergenic | 30.0% |
| !!! | AGTGACTTTCTGAAATTTTG+AGG | + | chr8_2:10330668-10330687 | None:intergenic | 30.0% |
| AAAATACAAGGGAAAAACTG+TGG | + | chr8_2:10330926-10330945 | None:intergenic | 30.0% | |
| CACAGACACTAAAAAATACA+AGG | + | chr8_2:10330938-10330957 | None:intergenic | 30.0% | |
| !!! | TGTATTTTTTAGTGTCTGTG+CGG | - | chr8_2:10330938-10330957 | Msa1233540:intron | 30.0% |
| TCAAGATCTCTTGGTTAATT+TGG | - | chr8_2:10331039-10331058 | Msa1233540:intron | 30.0% | |
| ! | GCATTGTTTTCCACTAAAAT+AGG | - | chr8_2:10331203-10331222 | Msa1233540:intron | 30.0% |
| ! | TTGTTTTCCACTAAAATAGG+TGG | - | chr8_2:10331206-10331225 | Msa1233540:intron | 30.0% |
| ! | GAACTTGAATTCTTTGAAAG+AGG | - | chr8_2:10331287-10331306 | Msa1233540:intron | 30.0% |
| TCTGTTATTGTAAGGATCTT+GGG | - | chr8_2:10331334-10331353 | Msa1233540:intron | 30.0% | |
| !!! | ATGGTGTTGACAACTTTTTT+TGG | - | chr8_2:10332351-10332370 | Msa1233540:CDS | 30.0% |
| !!! | TGGTGTTGACAACTTTTTTT+GGG | - | chr8_2:10332352-10332371 | Msa1233540:CDS | 30.0% |
| ! | ACCAAATCTTGTTTGGATAT+TGG | - | chr8_2:10332445-10332464 | Msa1233540:five_prime_UTR | 30.0% |
| TCCAATATCCAAACAAGATT+TGG | + | chr8_2:10332449-10332468 | None:intergenic | 30.0% | |
| TGGGAAATCAAAAGCTGAAA+TGG | - | chr8_2:10328231-10328250 | Msa1233540:three_prime_UTR | 35.0% | |
| AAAACGAAAACCCTAAGCTA+GGG | + | chr8_2:10328392-10328411 | None:intergenic | 35.0% | |
| AAAAACGAAAACCCTAAGCT+AGG | + | chr8_2:10328393-10328412 | None:intergenic | 35.0% | |
| ! | GGTTTGTTTAGGATAAATGG+AGG | - | chr8_2:10328457-10328476 | Msa1233540:intron | 35.0% |
| !!! | ATTTTGATTAACAGCAGCAC+TGG | + | chr8_2:10328589-10328608 | None:intergenic | 35.0% |
| !! | ACATCTTGGTCATTTTGAAG+AGG | + | chr8_2:10328678-10328697 | None:intergenic | 35.0% |
| TCTTCTGAACAATTCGTCAT+TGG | + | chr8_2:10328788-10328807 | None:intergenic | 35.0% | |
| ! | AGAACCTGAGTTTGATTTCT+TGG | - | chr8_2:10328805-10328824 | Msa1233540:intron | 35.0% |
| !! | AACATAGTGATTTGGTTGTG+AGG | - | chr8_2:10329018-10329037 | Msa1233540:intron | 35.0% |
| ! | GGTTGTGAGGAAATTTTATG+TGG | - | chr8_2:10329031-10329050 | Msa1233540:intron | 35.0% |
| ! | GAAATTTTATGTGGGTGTCT+GGG | - | chr8_2:10329040-10329059 | Msa1233540:intron | 35.0% |
| AATAAACACACGCACTAAAG+GGG | + | chr8_2:10329089-10329108 | None:intergenic | 35.0% | |
| CAAATAAACACACGCACTAA+AGG | + | chr8_2:10329091-10329110 | None:intergenic | 35.0% | |
| TGCGTGTGTTTATTTGAGTA+TGG | - | chr8_2:10329095-10329114 | Msa1233540:intron | 35.0% | |
| GCGTGTGTTTATTTGAGTAT+GGG | - | chr8_2:10329096-10329115 | Msa1233540:intron | 35.0% | |
| GTGTTTATTTGAGTATGGGT+TGG | - | chr8_2:10329100-10329119 | Msa1233540:intron | 35.0% | |
| CATATTATCTCATCCAATGC+AGG | + | chr8_2:10329176-10329195 | None:intergenic | 35.0% | |
| AAAACCGTCTTAAAAGGAGA+GGG | + | chr8_2:10329282-10329301 | None:intergenic | 35.0% | |
| CTCTACAAAACCGTCTTAAA+AGG | + | chr8_2:10329288-10329307 | None:intergenic | 35.0% | |
| !!! | CTTTTAAGACGGTTTTGTAG+AGG | - | chr8_2:10329286-10329305 | Msa1233540:intron | 35.0% |
| TATATCGTAGTGACTAGAGA+TGG | - | chr8_2:10329889-10329908 | Msa1233540:intron | 35.0% | |
| GTCATTACATGTACACCTAT+AGG | + | chr8_2:10330068-10330087 | None:intergenic | 35.0% | |
| ATAGGTGTACATGTAATGAC+AGG | - | chr8_2:10330068-10330087 | Msa1233540:intron | 35.0% | |
| TAGGTGTACATGTAATGACA+GGG | - | chr8_2:10330069-10330088 | Msa1233540:intron | 35.0% | |
| ! | TGAAGCTCTGACTACATTAA+AGG | - | chr8_2:10330300-10330319 | Msa1233540:CDS | 35.0% |
| AACCTCAATGAAACTAGCAA+TGG | + | chr8_2:10330350-10330369 | None:intergenic | 35.0% | |
| TACTATACCATTTCGTGAGT+TGG | - | chr8_2:10330412-10330431 | Msa1233540:intron | 35.0% | |
| TTTCAAACCAACTCACGAAA+TGG | + | chr8_2:10330422-10330441 | None:intergenic | 35.0% | |
| ! | TTTTGCTGCAGCAATATATG+TGG | + | chr8_2:10330635-10330654 | None:intergenic | 35.0% |
| AACTTATAGGTATAGCTGTG+TGG | - | chr8_2:10331063-10331082 | Msa1233540:intron | 35.0% | |
| ACTTATAGGTATAGCTGTGT+GGG | - | chr8_2:10331064-10331083 | Msa1233540:intron | 35.0% | |
| GCTATCGTAGAATATTGCTT+TGG | - | chr8_2:10331117-10331136 | Msa1233540:intron | 35.0% | |
| !! | GTTGTTGAGAAGTTTCTAGT+GGG | + | chr8_2:10331161-10331180 | None:intergenic | 35.0% |
| ! | TGTTGTTGAGAAGTTTCTAG+TGG | + | chr8_2:10331162-10331181 | None:intergenic | 35.0% |
| ! | CTTAAGTTGCACATATCTCT+GGG | + | chr8_2:10331240-10331259 | None:intergenic | 35.0% |
| ! | ACTTAAGTTGCACATATCTC+TGG | + | chr8_2:10331241-10331260 | None:intergenic | 35.0% |
| CTCTGTTATTGTAAGGATCT+TGG | - | chr8_2:10331333-10331352 | Msa1233540:intron | 35.0% | |
| TTATTGTAAGGATCTTGGGT+GGG | - | chr8_2:10331338-10331357 | Msa1233540:intron | 35.0% | |
| ! | ATTGGAAAGAGTGATGATGA+TGG | + | chr8_2:10331402-10331421 | None:intergenic | 35.0% |
| AAGCACAGGAACATCTATTT+GGG | + | chr8_2:10331481-10331500 | None:intergenic | 35.0% | |
| AGCAATAGAGAGAAAGTAGA+AGG | + | chr8_2:10331620-10331639 | None:intergenic | 35.0% | |
| CATTTCTTGTGACAACTTGT+TGG | + | chr8_2:10331689-10331708 | None:intergenic | 35.0% | |
| CAACAAGTTGTCACAAGAAA+TGG | - | chr8_2:10331687-10331706 | Msa1233540:intron | 35.0% | |
| !!! | TCCAATTTTTTACCATCTGC+AGG | - | chr8_2:10331810-10331829 | Msa1233540:intron | 35.0% |
| TCCTGCAGATGGTAAAAAAT+TGG | + | chr8_2:10331814-10331833 | None:intergenic | 35.0% | |
| ! | AACAATTTTGTTCCTGCAGA+TGG | + | chr8_2:10331825-10331844 | None:intergenic | 35.0% |
| ! | CAAGATAAAAGAAGCCTTGT+TGG | - | chr8_2:10331846-10331865 | Msa1233540:intron | 35.0% |
| !!! | AGGTGATTTTTTCACCAACA+AGG | + | chr8_2:10331863-10331882 | None:intergenic | 35.0% |
| ATCACCTTCACCAAAACAAA+AGG | - | chr8_2:10331876-10331895 | Msa1233540:intron | 35.0% | |
| !!! | TTTTGTTTTGCTGAAGGTGA+TGG | + | chr8_2:10331910-10331929 | None:intergenic | 35.0% |
| ATCACCTTCAGCAAAACAAA+AGG | - | chr8_2:10331909-10331928 | Msa1233540:intron | 35.0% | |
| AAATAGACCCACAAGATCAA+TGG | + | chr8_2:10332218-10332237 | None:intergenic | 35.0% | |
| ! | ACTATCAAATGGGCTTAAGA+TGG | - | chr8_2:10332258-10332277 | Msa1233540:intron | 35.0% |
| AAGTTGTCAACACCATTTAC+TGG | + | chr8_2:10332347-10332366 | None:intergenic | 35.0% | |
| !!! | GGTGTTGACAACTTTTTTTG+GGG | - | chr8_2:10332353-10332372 | Msa1233540:CDS | 35.0% |
| TACATGAGTTTCCCTACTAA+AGG | + | chr8_2:10332395-10332414 | None:intergenic | 35.0% | |
| CAAGACTACCAAATCTTGTT+TGG | - | chr8_2:10332438-10332457 | Msa1233540:five_prime_UTR | 35.0% | |
| ! | TTTTCTACTGCTTCCACTTT+GGG | + | chr8_2:10332472-10332491 | None:intergenic | 35.0% |
| ! | ATTTTCTACTGCTTCCACTT+TGG | + | chr8_2:10332473-10332492 | None:intergenic | 35.0% |
| GAATGGCTTTCCATTTACCA+GGG | + | chr8_2:10328304-10328323 | None:intergenic | 40.0% | |
| AGAATGGCTTTCCATTTACC+AGG | + | chr8_2:10328305-10328324 | None:intergenic | 40.0% | |
| TTGGAACGAGAAGTGAGTAA+AGG | + | chr8_2:10328347-10328366 | None:intergenic | 40.0% | |
| !! | TCTTGGTCATTTTGAAGAGG+AGG | + | chr8_2:10328675-10328694 | None:intergenic | 40.0% |
| TCTGAACAATTCGTCATTGG+CGG | + | chr8_2:10328785-10328804 | None:intergenic | 40.0% | |
| ! | ACCTGAGTTTGATTTCTTGG+TGG | - | chr8_2:10328808-10328827 | Msa1233540:intron | 40.0% |
| TCCACCAAGAAATCAAACTC+AGG | + | chr8_2:10328812-10328831 | None:intergenic | 40.0% | |
| !!! | TTTTTTTGGCGTTAACCCTC+CGG | + | chr8_2:10328905-10328924 | None:intergenic | 40.0% |
| ! | GGAAATTTTATGTGGGTGTC+TGG | - | chr8_2:10329039-10329058 | Msa1233540:intron | 40.0% |
| ATAAACACACGCACTAAAGG+GGG | + | chr8_2:10329088-10329107 | None:intergenic | 40.0% | |
| !! | TTGAGTATGGGTTGGTTACT+TGG | - | chr8_2:10329108-10329127 | Msa1233540:intron | 40.0% |
| !! | ACATCCCTCTCCTTTTAAGA+CGG | - | chr8_2:10329275-10329294 | Msa1233540:intron | 40.0% |
| CAAAACCGTCTTAAAAGGAG+AGG | + | chr8_2:10329283-10329302 | None:intergenic | 40.0% | |
| !! | TTAAGACGGTTTTGTAGAGG+TGG | - | chr8_2:10329289-10329308 | Msa1233540:intron | 40.0% |
| TGGAGTAATGTTGTCAATCG+CGG | - | chr8_2:10329336-10329355 | Msa1233540:intron | 40.0% | |
| ! | CTGCTATTTAACAACGGTGT+TGG | - | chr8_2:10329520-10329539 | Msa1233540:intron | 40.0% |
| ! | TTCGTGTCACTCTAGATGTT+TGG | - | chr8_2:10329569-10329588 | Msa1233540:intron | 40.0% |
| ATGTTTGGTTGTTGTAGTCG+TGG | - | chr8_2:10329584-10329603 | Msa1233540:intron | 40.0% | |
| TGTTTGGTTGTTGTAGTCGT+GGG | - | chr8_2:10329585-10329604 | Msa1233540:intron | 40.0% | |
| ! | AAAAGGCTTTTGTACTCGGA+TGG | - | chr8_2:10329657-10329676 | Msa1233540:intron | 40.0% |
| ! | GCATCATTTTGTACTGGGAT+TGG | - | chr8_2:10329841-10329860 | Msa1233540:intron | 40.0% |
| TATGTGGCAATCAGTCTGAT+CGG | - | chr8_2:10330022-10330041 | Msa1233540:intron | 40.0% | |
| CAATCAGTCTGATCGGTAAA+AGG | - | chr8_2:10330029-10330048 | Msa1233540:intron | 40.0% | |
| ACTAGCAATGGCATTTACGT+CGG | + | chr8_2:10330338-10330357 | None:intergenic | 40.0% | |
| ! | TGCCATTGCTAGTTTCATTG+AGG | - | chr8_2:10330345-10330364 | Msa1233540:CDS | 40.0% |
| TATCACGTAAGCATCAACAG+AGG | + | chr8_2:10330747-10330766 | None:intergenic | 40.0% | |
| ! | ATCATGTTGTTTGGTCGAGT+TGG | - | chr8_2:10330827-10330846 | Msa1233540:intron | 40.0% |
| TCACCTTTGTTCAAGCTTAG+TGG | - | chr8_2:10330983-10331002 | Msa1233540:intron | 40.0% | |
| AGACCACTAAGCTTGAACAA+AGG | + | chr8_2:10330989-10331008 | None:intergenic | 40.0% | |
| AACAACATGCACAGTCGATA+AGG | - | chr8_2:10331175-10331194 | Msa1233540:intron | 40.0% | |
| !! | TGACATGCCACCTATTTTAG+TGG | + | chr8_2:10331216-10331235 | None:intergenic | 40.0% |
| ! | GTAGTGGCTCTGTTATTGTA+AGG | - | chr8_2:10331326-10331345 | Msa1233540:intron | 40.0% |
| GTTATTGTAAGGATCTTGGG+TGG | - | chr8_2:10331337-10331356 | Msa1233540:intron | 40.0% | |
| TATTGTAAGGATCTTGGGTG+GGG | - | chr8_2:10331339-10331358 | Msa1233540:intron | 40.0% | |
| AGTGTTGCGTGTAGAAACAT+TGG | + | chr8_2:10331420-10331439 | None:intergenic | 40.0% | |
| !! | ATTTGGGAGAGTTTTAGTCC+TGG | + | chr8_2:10331465-10331484 | None:intergenic | 40.0% |
| GAAGCACAGGAACATCTATT+TGG | + | chr8_2:10331482-10331501 | None:intergenic | 40.0% | |
| GACTCTGCGCTCTTAAAATT+TGG | - | chr8_2:10331525-10331544 | Msa1233540:intron | 40.0% | |
| ACCTTCACCAAAACAAAAGG+AGG | - | chr8_2:10331879-10331898 | Msa1233540:intron | 40.0% | |
| ACCTTCAGCAAAACAAAAGG+TGG | - | chr8_2:10331912-10331931 | Msa1233540:intron | 40.0% | |
| !!! | ACCACCTTTTGTTTTGCTGA+AGG | + | chr8_2:10331916-10331935 | None:intergenic | 40.0% |
| AGTCTCTGATGATATGCTGA+AGG | - | chr8_2:10331975-10331994 | Msa1233540:CDS | 40.0% | |
| CAAATCATATCTGGCAACTG+AGG | - | chr8_2:10332041-10332060 | Msa1233540:CDS | 40.0% | |
| GACAGAAAAATACTCACGCA+TGG | - | chr8_2:10332074-10332093 | Msa1233540:CDS | 40.0% | |
| TCTTGTGGGTCTATTTATGC+AGG | - | chr8_2:10332222-10332241 | Msa1233540:intron | 40.0% | |
| TCTATTTATGCAGGTTTGCG+CGG | - | chr8_2:10332231-10332250 | Msa1233540:intron | 40.0% | |
| TTTGGATATTGGACCCAAAG+TGG | - | chr8_2:10332456-10332475 | Msa1233540:five_prime_UTR | 40.0% | |
| ATCGCTGGAATCGAAAGACA+TGG | - | chr8_2:10328278-10328297 | Msa1233540:three_prime_UTR | 45.0% | |
| AAAGACATGGCCCTGGTAAA+TGG | - | chr8_2:10328291-10328310 | Msa1233540:three_prime_UTR | 45.0% | |
| ATTCTCCTTGACCCTCAGTT+CGG | - | chr8_2:10328320-10328339 | Msa1233540:three_prime_UTR | 45.0% | |
| TGAGTAAAGGACCGAACTGA+GGG | + | chr8_2:10328334-10328353 | None:intergenic | 45.0% | |
| AGGTTACCTTACCCTAGCTT+AGG | - | chr8_2:10328378-10328397 | Msa1233540:exon | 45.0% | |
| GGTTACCTTACCCTAGCTTA+GGG | - | chr8_2:10328379-10328398 | Msa1233540:CDS | 45.0% | |
| GAAAACCCTAAGCTAGGGTA+AGG | + | chr8_2:10328387-10328406 | None:intergenic | 45.0% | |
| GGTTTGCATTTGGGAAACCT+AGG | + | chr8_2:10328513-10328532 | None:intergenic | 45.0% | |
| GGAGGAACAATTTGAAGAGG+AGG | + | chr8_2:10328654-10328673 | None:intergenic | 45.0% | |
| GGAGGAGGAACAATTTGAAG+AGG | + | chr8_2:10328657-10328676 | None:intergenic | 45.0% | |
| !! | TGGTCATTTTGAAGAGGAGG+AGG | + | chr8_2:10328672-10328691 | None:intergenic | 45.0% |
| GACCATGGTATTCAGAGTTC+GGG | + | chr8_2:10328867-10328886 | None:intergenic | 45.0% | |
| GGACCATGGTATTCAGAGTT+CGG | + | chr8_2:10328868-10328887 | None:intergenic | 45.0% | |
| !! | GGGTTGGTTACTTGGTCAAT+TGG | - | chr8_2:10329116-10329135 | Msa1233540:intron | 45.0% |
| ATGTTGTCAATCGCGGATAG+CGG | - | chr8_2:10329343-10329362 | Msa1233540:intron | 45.0% | |
| GCTATACTGCTAGAGCGTAA+TGG | + | chr8_2:10329490-10329509 | None:intergenic | 45.0% | |
| ATGAGCCTATAGGCTATAGC+AGG | + | chr8_2:10329550-10329569 | None:intergenic | 45.0% | |
| AGTGACACGAATGAGCCTAT+AGG | + | chr8_2:10329560-10329579 | None:intergenic | 45.0% | |
| GTTTGGTTGTTGTAGTCGTG+GGG | - | chr8_2:10329586-10329605 | Msa1233540:intron | 45.0% | |
| TTTGGTTGTTGTAGTCGTGG+GGG | - | chr8_2:10329587-10329606 | Msa1233540:intron | 45.0% | |
| ! | TTTTGTACTCGGATGGTCGA+CGG | - | chr8_2:10329664-10329683 | Msa1233540:intron | 45.0% |
| !! | ATTGCTGCAGCAAAAGCATC+CGG | - | chr8_2:10330640-10330659 | Msa1233540:intron | 45.0% |
| ! | TCAGAAAGTCACTGACTGCA+AGG | - | chr8_2:10330675-10330694 | Msa1233540:intron | 45.0% |
| TTGAGGATGCTTGTGAGTCA+AGG | - | chr8_2:10330698-10330717 | Msa1233540:intron | 45.0% | |
| TGAGGATGCTTGTGAGTCAA+GGG | - | chr8_2:10330699-10330718 | Msa1233540:intron | 45.0% | |
| GAGTCAAGGGAAGCTTGAAA+AGG | - | chr8_2:10330712-10330731 | Msa1233540:intron | 45.0% | |
| GAAAAACTGTGGAGCATAGG+AGG | + | chr8_2:10330915-10330934 | None:intergenic | 45.0% | |
| AGGGAAAAACTGTGGAGCAT+AGG | + | chr8_2:10330918-10330937 | None:intergenic | 45.0% | |
| GTATAGCTGTGTGGGTGATT+TGG | - | chr8_2:10331072-10331091 | Msa1233540:intron | 45.0% | |
| TTGCTTTGGCAATTGACCAG+AGG | - | chr8_2:10331131-10331150 | Msa1233540:intron | 45.0% | |
| TGCTTTGGCAATTGACCAGA+GGG | - | chr8_2:10331132-10331151 | Msa1233540:intron | 45.0% | |
| ATTGTAAGGATCTTGGGTGG+GGG | - | chr8_2:10331340-10331359 | Msa1233540:intron | 45.0% | |
| !!! | GGGGATTTTTTCGCAAGTAG+AGG | - | chr8_2:10331359-10331378 | Msa1233540:intron | 45.0% |
| !! | GAGAGTTTTAGTCCTGGCAA+TGG | + | chr8_2:10331459-10331478 | None:intergenic | 45.0% |
| AGATGTTCCTGTGCTTCCAT+TGG | - | chr8_2:10331485-10331504 | Msa1233540:intron | 45.0% | |
| GATGTTCCTGTGCTTCCATT+GGG | - | chr8_2:10331486-10331505 | Msa1233540:intron | 45.0% | |
| !!! | GCCTCCTTTTGTTTTGGTGA+AGG | + | chr8_2:10331883-10331902 | None:intergenic | 45.0% |
| !! | TTTTGCTGAAGGTGATGGCT+TGG | + | chr8_2:10331905-10331924 | None:intergenic | 45.0% |
| CAGCAAAACAAAAGGTGGTC+AGG | - | chr8_2:10331917-10331936 | Msa1233540:intron | 45.0% | |
| ! | GAGACTGATGATTGCCGTTT+CGG | + | chr8_2:10331943-10331962 | None:intergenic | 45.0% |
| TGCGCGGTGAAACTATCAAA+TGG | - | chr8_2:10332247-10332266 | Msa1233540:intron | 45.0% | |
| GCGCGGTGAAACTATCAAAT+GGG | - | chr8_2:10332248-10332267 | Msa1233540:intron | 45.0% | |
| !! | TTAAAAATTTAAATGAAAAA+AGG | + | chr8_2:10328422-10328441 | None:intergenic | 5.0% |
| GAAGAAGACGCTCTTATCGC+TGG | - | chr8_2:10328263-10328282 | Msa1233540:three_prime_UTR | 50.0% | |
| GAACTGAGGGTCAAGGAGAA+TGG | + | chr8_2:10328321-10328340 | None:intergenic | 50.0% | |
| GTGAGTAAAGGACCGAACTG+AGG | + | chr8_2:10328335-10328354 | None:intergenic | 50.0% | |
| TCGTTCCAACATCGACCTCA+AGG | - | chr8_2:10328358-10328377 | Msa1233540:three_prime_UTR | 50.0% | |
| GGTAACCTTGAGGTCGATGT+TGG | + | chr8_2:10328366-10328385 | None:intergenic | 50.0% | |
| GCTAGGGTAAGGTAACCTTG+AGG | + | chr8_2:10328376-10328395 | None:intergenic | 50.0% | |
| GCAGCAGCAGGTTTGCATTT+GGG | + | chr8_2:10328522-10328541 | None:intergenic | 50.0% | |
| AGCAGCAGCAGGTTTGCATT+TGG | + | chr8_2:10328523-10328542 | None:intergenic | 50.0% | |
| ! | GCAGCACTGGAAGAAGAAAC+AGG | + | chr8_2:10328576-10328595 | None:intergenic | 50.0% |
| GTATTCAGAGTTCGGGCAGA+AGG | + | chr8_2:10328860-10328879 | None:intergenic | 50.0% | |
| TGCCCGAACTCTGAATACCA+TGG | - | chr8_2:10328862-10328881 | Msa1233540:intron | 50.0% | |
| !! | TTTTCAGGGGAATGGGACCA+TGG | + | chr8_2:10328882-10328901 | None:intergenic | 50.0% |
| ! | GTTAACCCTCCGGTTTTCAG+GGG | + | chr8_2:10328895-10328914 | None:intergenic | 50.0% |
| ! | CGTTAACCCTCCGGTTTTCA+GGG | + | chr8_2:10328896-10328915 | None:intergenic | 50.0% |
| ACGCACTAAAGGGGGAATTG+TGG | + | chr8_2:10329080-10329099 | None:intergenic | 50.0% | |
| TTGAGTGAGGGTTCCTGCAT+TGG | - | chr8_2:10329160-10329179 | Msa1233540:intron | 50.0% | |
| GACCACCTGCTATAGCCTAT+AGG | - | chr8_2:10329542-10329561 | Msa1233540:intron | 50.0% | |
| AGCCTATAGGCTATAGCAGG+TGG | + | chr8_2:10329547-10329566 | None:intergenic | 50.0% | |
| ATGACTGGTAGTCGTAGTCC+TGG | - | chr8_2:10329743-10329762 | Msa1233540:intron | 50.0% | |
| TGACTGGTAGTCGTAGTCCT+GGG | - | chr8_2:10329744-10329763 | Msa1233540:intron | 50.0% | |
| AACAAACACCTCTCATGCCC+AGG | + | chr8_2:10329764-10329783 | None:intergenic | 50.0% | |
| ! | AGTCACTGACTGCAAGGTTG+AGG | - | chr8_2:10330681-10330700 | Msa1233540:intron | 50.0% |
| !! | GTTTCTAGTGGGAAACCCTC+TGG | + | chr8_2:10331150-10331169 | None:intergenic | 50.0% |
| ! | CATTGCTAGCTTCCATTGCC+AGG | - | chr8_2:10331444-10331463 | Msa1233540:intron | 50.0% |
| !! | GGCTTGGCCTCCTTTTGTTT+TGG | + | chr8_2:10331889-10331908 | None:intergenic | 50.0% |
| AAAAGGTGGTCAGGCCGAAA+CGG | - | chr8_2:10331926-10331945 | Msa1233540:intron | 50.0% | |
| GGAATCGAAAGACATGGCCC+TGG | - | chr8_2:10328284-10328303 | Msa1233540:three_prime_UTR | 55.0% | |
| AAGGACCGAACTGAGGGTCA+AGG | + | chr8_2:10328328-10328347 | None:intergenic | 55.0% | |
| GAAGAAACAGGAGCAGCAGC+AGG | + | chr8_2:10328564-10328583 | None:intergenic | 55.0% | |
| GGTCCCATTCCCCTGAAAAC+CGG | - | chr8_2:10328883-10328902 | Msa1233540:intron | 55.0% | |
| !! | CCTCCGGTTTTCAGGGGAAT+GGG | + | chr8_2:10328889-10328908 | None:intergenic | 55.0% |
| CCATTCCCCTGAAAACCGGA+GGG | - | chr8_2:10328887-10328906 | Msa1233540:intron | 55.0% | |
| ! | GCGTTAACCCTCCGGTTTTC+AGG | + | chr8_2:10328897-10328916 | None:intergenic | 55.0% |
| AAGGGGGAATTGTGGAGACC+AGG | + | chr8_2:10329072-10329091 | None:intergenic | 55.0% | |
| AACTGTGGAGCATAGGAGGC+AGG | + | chr8_2:10330911-10330930 | None:intergenic | 55.0% | |
| GTAGTGCCTCTGCTGTGTAG+TGG | - | chr8_2:10331310-10331329 | Msa1233540:intron | 55.0% | |
| ACAGAGCCACTACACAGCAG+AGG | + | chr8_2:10331319-10331338 | None:intergenic | 55.0% | |
| TCTGGCAACTGAGGCAGTCA+AGG | - | chr8_2:10332050-10332069 | Msa1233540:CDS | 55.0% | |
| GAAGAAGCAGCAGCAGCAGC+AGG | + | chr8_2:10328534-10328553 | None:intergenic | 60.0% | |
| ACAGGAGCAGCAGCAGGAAC+AGG | + | chr8_2:10328558-10328577 | None:intergenic | 60.0% | |
| CCCATTCCCCTGAAAACCGG+AGG | - | chr8_2:10328886-10328905 | Msa1233540:intron | 60.0% | |
| !! | CCCTCCGGTTTTCAGGGGAA+TGG | + | chr8_2:10328890-10328909 | None:intergenic | 60.0% |
| TGGGTGTCTGGGTTCGATCC+TGG | - | chr8_2:10329051-10329070 | Msa1233540:intron | 60.0% | |
| TGTAGTCGTGGGGGTGAGAG+CGG | - | chr8_2:10329596-10329615 | Msa1233540:intron | 60.0% | |
| GTCGTAGTCCTGGGCATGAG+AGG | - | chr8_2:10329753-10329772 | Msa1233540:intron | 60.0% | |
| ! | GGTTGGCCCAATGGAAGCAC+AGG | + | chr8_2:10331495-10331514 | None:intergenic | 60.0% |
| CCATTGGGCCAACCTTGCCA+CGG | - | chr8_2:10331501-10331520 | Msa1233540:intron | 60.0% | |
| CATTGGGCCAACCTTGCCAC+GGG | - | chr8_2:10331502-10331521 | Msa1233540:intron | 60.0% | |
| ATTGGGCCAACCTTGCCACG+GGG | - | chr8_2:10331503-10331522 | Msa1233540:intron | 60.0% | |
| ! | TTAAGAGCGCAGAGTCCCCG+TGG | + | chr8_2:10331521-10331540 | None:intergenic | 60.0% |
| ! | CCGTGGCAAGGTTGGCCCAA+TGG | + | chr8_2:10331504-10331523 | None:intergenic | 65.0% |
| CAGAGTCCCCGTGGCAAGGT+TGG | + | chr8_2:10331512-10331531 | None:intergenic | 65.0% | |
| AGCGCAGAGTCCCCGTGGCA+AGG | + | chr8_2:10331516-10331535 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 10328158 | 10332496 | 10328158 | ID=Msa1233540;Name=Msa1233540 |
| chr8_2 | mRNA | 10328158 | 10332496 | 10328158 | ID=Msa1233540-mRNA-1;Parent=Msa1233540;Name=Msa1233540-mRNA-1;_AED=0.06;_eAED=0.06;_QI=72|1|1|1|1|1|6|221|305 |
| chr8_2 | exon | 10328158 | 10328410 | 10328158 | ID=Msa1233540-mRNA-1:exon:4061;Parent=Msa1233540-mRNA-1 |
| chr8_2 | exon | 10328507 | 10328822 | 10328507 | ID=Msa1233540-mRNA-1:exon:4060;Parent=Msa1233540-mRNA-1 |
| chr8_2 | exon | 10329921 | 10330004 | 10329921 | ID=Msa1233540-mRNA-1:exon:4059;Parent=Msa1233540-mRNA-1 |
| chr8_2 | exon | 10330288 | 10330372 | 10330288 | ID=Msa1233540-mRNA-1:exon:4058;Parent=Msa1233540-mRNA-1 |
| chr8_2 | exon | 10331936 | 10332186 | 10331936 | ID=Msa1233540-mRNA-1:exon:4057;Parent=Msa1233540-mRNA-1 |
| chr8_2 | exon | 10332275 | 10332496 | 10332275 | ID=Msa1233540-mRNA-1:exon:4056;Parent=Msa1233540-mRNA-1 |
| chr8_2 | five_prime_UTR | 10332425 | 10332496 | 10332425 | ID=Msa1233540-mRNA-1:five_prime_utr;Parent=Msa1233540-mRNA-1 |
| chr8_2 | CDS | 10332275 | 10332424 | 10332275 | ID=Msa1233540-mRNA-1:cds;Parent=Msa1233540-mRNA-1 |
| chr8_2 | CDS | 10331936 | 10332186 | 10331936 | ID=Msa1233540-mRNA-1:cds;Parent=Msa1233540-mRNA-1 |
| chr8_2 | CDS | 10330288 | 10330372 | 10330288 | ID=Msa1233540-mRNA-1:cds;Parent=Msa1233540-mRNA-1 |
| chr8_2 | CDS | 10329921 | 10330004 | 10329921 | ID=Msa1233540-mRNA-1:cds;Parent=Msa1233540-mRNA-1 |
| chr8_2 | CDS | 10328507 | 10328822 | 10328507 | ID=Msa1233540-mRNA-1:cds;Parent=Msa1233540-mRNA-1 |
| chr8_2 | CDS | 10328379 | 10328410 | 10328379 | ID=Msa1233540-mRNA-1:cds;Parent=Msa1233540-mRNA-1 |
| chr8_2 | three_prime_UTR | 10328158 | 10328378 | 10328158 | ID=Msa1233540-mRNA-1:three_prime_utr;Parent=Msa1233540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
