Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1234150 | XP_039685680.1 | 84.856 | 799 | 101 | 3 | 1 | 779 | 1 | 799 | 0.0 | 1392 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1234150 | sp|Q9SZL8|FRS5_ARATH | 27.925 | 641 | 382 | 14 | 32 | 665 | 70 | 637 | 1.53e-69 | 248 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1234150 | D3YBB9 | 76.456 | 807 | 173 | 4 | 1 | 798 | 49 | 847 | 0.0 | 1283 |
Gene ID | Type | Classification |
---|---|---|
Msa1234150 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1234150 | MtrunA17_Chr3g0088371 | 83.152 | 184 | 28 | 1 | 618 | 798 | 1 | 184 | 8.76e-103 | 315 |
Msa1234150 | MtrunA17_Chr2g0324011 | 30.709 | 635 | 364 | 12 | 36 | 665 | 8 | 571 | 3.05e-101 | 325 |
Msa1234150 | MtrunA17_Chr3g0082121 | 31.693 | 691 | 384 | 17 | 41 | 727 | 49 | 655 | 1.43e-100 | 326 |
Msa1234150 | MtrunA17_Chr1g0202341 | 29.606 | 635 | 366 | 17 | 34 | 662 | 50 | 609 | 6.25e-80 | 271 |
Msa1234150 | MtrunA17_Chr8g0363841 | 28.776 | 629 | 375 | 13 | 40 | 665 | 22 | 580 | 5.12e-75 | 257 |
Msa1234150 | MtrunA17_Chr1g0203721 | 26.026 | 780 | 452 | 20 | 1 | 739 | 16 | 711 | 5.73e-73 | 256 |
Msa1234150 | MtrunA17_Chr2g0296781 | 27.688 | 679 | 405 | 20 | 39 | 708 | 1 | 602 | 1.71e-68 | 240 |
Msa1234150 | MtrunA17_Chr5g0448761 | 25.318 | 707 | 449 | 14 | 31 | 728 | 56 | 692 | 2.00e-68 | 241 |
Msa1234150 | MtrunA17_Chr6g0458391 | 26.984 | 630 | 357 | 15 | 41 | 662 | 231 | 765 | 1.99e-65 | 233 |
Msa1234150 | MtrunA17_Chr6g0477261 | 29.412 | 527 | 314 | 14 | 180 | 699 | 7 | 482 | 5.96e-65 | 229 |
Msa1234150 | MtrunA17_Chr1g0164591 | 35.312 | 320 | 192 | 4 | 131 | 448 | 1 | 307 | 9.32e-63 | 214 |
Msa1234150 | MtrunA17_Chr2g0287651 | 25.755 | 629 | 387 | 13 | 39 | 662 | 79 | 632 | 1.05e-60 | 221 |
Msa1234150 | MtrunA17_Chr5g0441581 | 24.967 | 757 | 460 | 21 | 32 | 773 | 26 | 689 | 3.46e-59 | 214 |
Msa1234150 | MtrunA17_Chr5g0440451 | 24.294 | 708 | 429 | 16 | 34 | 721 | 42 | 662 | 1.06e-55 | 207 |
Msa1234150 | MtrunA17_Chr1g0172971 | 82.051 | 117 | 20 | 1 | 1 | 116 | 1 | 117 | 4.01e-54 | 196 |
Msa1234150 | MtrunA17_Chr1g0207551 | 24.821 | 697 | 430 | 17 | 31 | 718 | 30 | 641 | 4.09e-54 | 201 |
Msa1234150 | MtrunA17_Chr7g0258861 | 35.948 | 306 | 172 | 6 | 36 | 336 | 8 | 294 | 4.69e-54 | 189 |
Msa1234150 | MtrunA17_Chr2g0329031 | 25.776 | 644 | 382 | 18 | 23 | 658 | 2 | 557 | 1.65e-53 | 198 |
Msa1234150 | MtrunA17_Chr1g0198761 | 27.147 | 652 | 379 | 19 | 26 | 660 | 38 | 610 | 4.72e-53 | 197 |
Msa1234150 | MtrunA17_Chr1g0196541 | 24.880 | 627 | 397 | 16 | 39 | 662 | 1 | 556 | 2.73e-52 | 194 |
Msa1234150 | MtrunA17_Chr3g0118611 | 27.634 | 503 | 304 | 10 | 221 | 719 | 111 | 557 | 3.04e-52 | 195 |
Msa1234150 | MtrunA17_Chr3g0080351 | 23.724 | 725 | 449 | 15 | 34 | 752 | 75 | 701 | 1.13e-48 | 185 |
Msa1234150 | MtrunA17_Chr2g0287061 | 24.066 | 669 | 377 | 19 | 41 | 694 | 189 | 741 | 5.12e-48 | 182 |
Msa1234150 | MtrunA17_Chr2g0290391 | 26.012 | 642 | 372 | 19 | 38 | 660 | 54 | 611 | 2.58e-47 | 179 |
Msa1234150 | MtrunA17_Chr1g0203051 | 22.373 | 590 | 389 | 8 | 50 | 637 | 94 | 616 | 8.43e-47 | 177 |
Msa1234150 | MtrunA17_Chr2g0276841 | 25.984 | 635 | 374 | 21 | 49 | 669 | 84 | 636 | 3.91e-45 | 173 |
Msa1234150 | MtrunA17_Chr5g0448511 | 25.664 | 452 | 282 | 10 | 216 | 665 | 1 | 400 | 4.04e-44 | 167 |
Msa1234150 | MtrunA17_Chr5g0431001 | 28.160 | 451 | 279 | 12 | 40 | 473 | 66 | 488 | 2.44e-42 | 161 |
Msa1234150 | MtrunA17_Chr2g0291591 | 25.956 | 497 | 316 | 13 | 16 | 499 | 44 | 501 | 6.93e-42 | 161 |
Msa1234150 | MtrunA17_Chr2g0291581 | 23.923 | 627 | 396 | 14 | 38 | 662 | 74 | 621 | 6.71e-41 | 160 |
Msa1234150 | MtrunA17_Chr6g0475591 | 91.781 | 73 | 6 | 0 | 188 | 260 | 1 | 73 | 1.35e-40 | 143 |
Msa1234150 | MtrunA17_Chr2g0294841 | 26.640 | 503 | 316 | 15 | 3 | 482 | 7 | 479 | 1.73e-35 | 144 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1234150 | AT4G38180.1 | 27.925 | 641 | 382 | 14 | 32 | 665 | 70 | 637 | 1.55e-70 | 248 |
Msa1234150 | AT4G15090.1 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 2.07e-59 | 217 |
Msa1234150 | AT4G15090.5 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 2.07e-59 | 217 |
Msa1234150 | AT4G15090.3 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 2.07e-59 | 217 |
Msa1234150 | AT4G15090.2 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 2.07e-59 | 217 |
Msa1234150 | AT4G15090.4 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 2.07e-59 | 217 |
Msa1234150 | AT2G27110.2 | 25.070 | 714 | 423 | 19 | 10 | 719 | 29 | 634 | 1.09e-53 | 200 |
Msa1234150 | AT2G27110.1 | 25.070 | 714 | 423 | 19 | 10 | 719 | 29 | 634 | 1.09e-53 | 200 |
Msa1234150 | AT2G27110.3 | 27.308 | 509 | 313 | 11 | 213 | 719 | 36 | 489 | 4.79e-53 | 197 |
Msa1234150 | AT3G06250.2 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 5.24e-52 | 194 |
Msa1234150 | AT3G06250.1 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 5.24e-52 | 194 |
Msa1234150 | AT3G06250.3 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 5.24e-52 | 194 |
Msa1234150 | AT1G76320.3 | 24.815 | 677 | 413 | 19 | 50 | 720 | 12 | 598 | 4.74e-50 | 187 |
Msa1234150 | AT1G76320.2 | 24.852 | 676 | 412 | 19 | 50 | 719 | 12 | 597 | 1.19e-49 | 187 |
Msa1234150 | AT1G76320.1 | 24.852 | 676 | 412 | 19 | 50 | 719 | 12 | 597 | 1.52e-49 | 187 |
Msa1234150 | AT1G76320.4 | 24.852 | 676 | 412 | 19 | 50 | 719 | 12 | 597 | 1.52e-49 | 187 |
Msa1234150 | AT3G22170.2 | 22.466 | 730 | 449 | 17 | 34 | 753 | 69 | 691 | 1.37e-47 | 182 |
Msa1234150 | AT3G22170.1 | 22.466 | 730 | 449 | 17 | 34 | 753 | 69 | 691 | 1.37e-47 | 182 |
Msa1234150 | AT5G18960.2 | 24.730 | 647 | 359 | 18 | 24 | 661 | 200 | 727 | 2.75e-46 | 178 |
Msa1234150 | AT5G18960.1 | 24.730 | 647 | 359 | 18 | 24 | 661 | 200 | 727 | 2.75e-46 | 178 |
Msa1234150 | AT4G38170.1 | 24.532 | 481 | 295 | 13 | 235 | 703 | 24 | 448 | 8.24e-44 | 167 |
Msa1234150 | AT1G10240.2 | 24.719 | 623 | 377 | 19 | 49 | 659 | 62 | 604 | 8.82e-42 | 163 |
Msa1234150 | AT1G10240.1 | 24.719 | 623 | 377 | 19 | 49 | 659 | 62 | 604 | 8.82e-42 | 163 |
Msa1234150 | AT5G28530.1 | 24.100 | 639 | 388 | 17 | 40 | 660 | 60 | 619 | 1.31e-41 | 162 |
Msa1234150 | AT5G28530.3 | 23.944 | 639 | 385 | 18 | 40 | 660 | 60 | 615 | 7.95e-41 | 160 |
Msa1234150 | AT5G28530.2 | 23.944 | 639 | 385 | 18 | 40 | 660 | 60 | 615 | 7.95e-41 | 160 |
Msa1234150 | AT2G32250.5 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 1.12e-39 | 157 |
Msa1234150 | AT2G32250.2 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 1.78e-39 | 157 |
Msa1234150 | AT2G32250.4 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 1.78e-39 | 157 |
Msa1234150 | AT2G32250.6 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 2.54e-39 | 157 |
Msa1234150 | AT2G32250.1 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 2.54e-39 | 157 |
Msa1234150 | AT2G32250.3 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 2.54e-39 | 157 |
Msa1234150 | AT2G32250.7 | 23.588 | 708 | 407 | 18 | 41 | 743 | 3 | 581 | 1.14e-38 | 154 |
Msa1234150 | AT2G32250.8 | 23.605 | 699 | 400 | 18 | 50 | 743 | 12 | 581 | 1.18e-38 | 154 |
Msa1234150 | AT1G80010.1 | 23.556 | 658 | 370 | 24 | 41 | 662 | 101 | 661 | 3.74e-36 | 146 |
Msa1234150 | AT1G52520.1 | 22.080 | 625 | 407 | 16 | 41 | 662 | 91 | 638 | 2.37e-33 | 137 |
Msa1234150 | AT4G19990.1 | 28.731 | 268 | 184 | 4 | 219 | 483 | 106 | 369 | 2.35e-27 | 119 |
Msa1234150 | AT4G19990.1 | 35.338 | 133 | 72 | 3 | 591 | 721 | 438 | 558 | 2.15e-12 | 71.2 |
Msa1234150 | AT4G19990.7 | 28.731 | 268 | 184 | 4 | 219 | 483 | 177 | 440 | 2.57e-27 | 119 |
Msa1234150 | AT4G19990.7 | 35.338 | 133 | 72 | 3 | 591 | 721 | 509 | 629 | 2.49e-12 | 71.2 |
Msa1234150 | AT4G19990.5 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 2.63e-27 | 119 |
Msa1234150 | AT4G19990.5 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.44e-12 | 71.2 |
Msa1234150 | AT4G19990.3 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 3.17e-27 | 119 |
Msa1234150 | AT4G19990.3 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.49e-12 | 71.2 |
Msa1234150 | AT4G19990.4 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 3.17e-27 | 119 |
Msa1234150 | AT4G19990.4 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.49e-12 | 71.2 |
Msa1234150 | AT4G19990.6 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 3.34e-27 | 119 |
Msa1234150 | AT4G19990.6 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.21e-12 | 71.2 |
Msa1234150 | AT4G19990.2 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 3.34e-27 | 119 |
Msa1234150 | AT4G19990.2 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.21e-12 | 71.2 |
Msa1234150 | AT5G28530.4 | 21.781 | 629 | 352 | 20 | 40 | 660 | 60 | 556 | 1.39e-22 | 103 |
Msa1234150 | AT5G28530.5 | 21.622 | 629 | 349 | 21 | 40 | 660 | 60 | 552 | 9.74e-22 | 100 |
Find 124 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCATGCTGAGTTGGACTTTA+AGG | 0.133287 | 8_2:+11371275 | Msa1234150:CDS |
TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 8_2:+11370966 | Msa1234150:CDS |
AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | 8_2:-11372101 | None:intergenic |
CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 8_2:+11371233 | Msa1234150:CDS |
CAACAAGATTATGCTCTATT+TGG | 0.198611 | 8_2:+11370182 | Msa1234150:CDS |
TTCATTTCAGCTGCCTTTCT+TGG | 0.201003 | 8_2:+11370685 | Msa1234150:intron |
CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 8_2:+11370718 | Msa1234150:CDS |
TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 8_2:-11370812 | None:intergenic |
TTCTTTGACCTAATTGGATT+TGG | 0.299426 | 8_2:-11372095 | None:intergenic |
AATCAGATTTCGACTACAAT+TGG | 0.318540 | 8_2:+11371007 | Msa1234150:CDS |
TGTTCTTGAGGCAGGGAAAA+AGG | 0.322946 | 8_2:+11371947 | Msa1234150:CDS |
ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | 8_2:-11370830 | None:intergenic |
GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 8_2:-11370232 | None:intergenic |
TTGGTTTGAATATTATCTTC+TGG | 0.345646 | 8_2:+11372344 | Msa1234150:three_prime_UTR |
TTTGCTTCTTCCGAGCTATA+AGG | 0.345757 | 8_2:-11372163 | None:intergenic |
GGTTTCGAATGTTGATGTTT+TGG | 0.354913 | 8_2:+11371530 | Msa1234150:CDS |
TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 8_2:+11371107 | Msa1234150:CDS |
CTCAACGGTGTTCTTGAGGC+AGG | 0.386173 | 8_2:+11371939 | Msa1234150:CDS |
AACAATAAATATCGGCCATT+AGG | 0.388497 | 8_2:+11370239 | Msa1234150:CDS |
ACCGAACAAACAATAAATAT+CGG | 0.389395 | 8_2:+11370231 | Msa1234150:CDS |
TTTCAATTTATCATATCTAA+TGG | 0.390380 | 8_2:+11369319 | None:intergenic |
GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 8_2:+11371106 | Msa1234150:CDS |
GTCTTTAGTGCCAACATTCA+TGG | 0.395146 | 8_2:-11371823 | None:intergenic |
TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 8_2:-11369702 | None:intergenic |
AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 8_2:+11372087 | Msa1234150:CDS |
TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 8_2:-11372077 | None:intergenic |
TTCCTTCAAATACTATTATG+AGG | 0.399583 | 8_2:+11371407 | Msa1234150:CDS |
GAGGAGTTTCTTATTTCTAA+AGG | 0.403538 | 8_2:+11371972 | Msa1234150:CDS |
TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 8_2:+11369473 | Msa1234150:CDS |
CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | 8_2:+11371655 | Msa1234150:CDS |
GATTATGATCTTCAAACCTT+GGG | 0.413114 | 8_2:-11371578 | None:intergenic |
ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 8_2:+11369544 | Msa1234150:CDS |
CGATTATGATCTTCAAACCT+TGG | 0.425681 | 8_2:-11371579 | None:intergenic |
CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 8_2:+11369879 | Msa1234150:CDS |
AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 8_2:+11369761 | Msa1234150:CDS |
TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 8_2:-11370823 | None:intergenic |
GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 8_2:+11369744 | Msa1234150:CDS |
CGCTTTAAAACATATTGTGC+AGG | 0.447633 | 8_2:-11371756 | None:intergenic |
CGTTATGTTTGTAACAAAGA+AGG | 0.449439 | 8_2:+11369627 | Msa1234150:CDS |
GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 8_2:+11369909 | Msa1234150:CDS |
ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 8_2:+11369398 | Msa1234150:CDS |
TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 8_2:+11370897 | Msa1234150:CDS |
GGCCTACTTCGGACTTTAAG+TGG | 0.458978 | 8_2:+11371061 | Msa1234150:CDS |
ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | 8_2:+11371656 | Msa1234150:CDS |
AATTCTTGATTGTTATGCAT+TGG | 0.467731 | 8_2:+11372325 | Msa1234150:three_prime_UTR |
ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 8_2:+11369593 | Msa1234150:CDS |
GGGTTGTCACAGTCGACATT+GGG | 0.480993 | 8_2:+11371613 | Msa1234150:CDS |
GAAGTGATGGGTCAAGGAGT+TGG | 0.484292 | 8_2:+11369954 | Msa1234150:CDS |
CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 8_2:-11371409 | None:intergenic |
TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 8_2:-11369738 | None:intergenic |
TTTAATTATGCATATAACAC+TGG | 0.485542 | 8_2:+11369531 | Msa1234150:CDS |
CTGTCTGTGAACCATCTGTT+GGG | 0.487793 | 8_2:+11372048 | Msa1234150:CDS |
TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 8_2:+11370022 | Msa1234150:CDS |
CTCAAGTAGCACAAATGCTC+TGG | 0.489977 | 8_2:-11369849 | None:intergenic |
CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 8_2:+11369587 | Msa1234150:CDS |
TATGAGGAGGACACAACAAA+AGG | 0.490908 | 8_2:+11371423 | Msa1234150:CDS |
ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 8_2:-11370698 | None:intergenic |
ATCAGATTTCGACTACAATT+GGG | 0.491708 | 8_2:+11371008 | Msa1234150:CDS |
CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 8_2:+11370035 | Msa1234150:CDS |
ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 8_2:+11371247 | Msa1234150:CDS |
GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 8_2:-11371327 | None:intergenic |
GAGAACATCTTATGAAGTGA+TGG | 0.499875 | 8_2:+11369941 | Msa1234150:CDS |
TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 8_2:-11370127 | None:intergenic |
GCTGTCTGTGAACCATCTGT+TGG | 0.504047 | 8_2:+11372047 | Msa1234150:CDS |
AAATGCTCTGGTTTATGTAA+TGG | 0.504865 | 8_2:-11369837 | None:intergenic |
CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 8_2:+11371094 | Msa1234150:CDS |
ATCATAATCGACTTGATGAA+AGG | 0.507955 | 8_2:+11371592 | Msa1234150:CDS |
TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 8_2:-11369993 | None:intergenic |
GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 8_2:+11371266 | Msa1234150:CDS |
ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 8_2:+11371112 | Msa1234150:CDS |
TGTCTATAAGATATATAAGT+GGG | 0.514682 | 8_2:+11369797 | Msa1234150:CDS |
GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 8_2:-11371572 | None:intergenic |
TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 8_2:-11371215 | None:intergenic |
TAACAAAGAAGGTTTCAAGA+AGG | 0.525236 | 8_2:+11369638 | Msa1234150:CDS |
TCATAATCGACTTGATGAAA+GGG | 0.526860 | 8_2:+11371593 | Msa1234150:CDS |
CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 8_2:-11371404 | None:intergenic |
GACAGAAATTCCTTATAGCT+CGG | 0.533906 | 8_2:+11372153 | Msa1234150:CDS |
AGGGTTGTCACAGTCGACAT+TGG | 0.538587 | 8_2:+11371612 | Msa1234150:CDS |
AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 8_2:-11371210 | None:intergenic |
ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 8_2:+11371424 | Msa1234150:CDS |
AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 8_2:+11369639 | Msa1234150:CDS |
CATTTAGTGATAAAGAATCA+TGG | 0.546005 | 8_2:+11369463 | Msa1234150:CDS |
ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 8_2:-11370843 | None:intergenic |
CTGAAATCCACCATGAATGT+TGG | 0.557140 | 8_2:+11371813 | Msa1234150:CDS |
AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 8_2:+11370089 | Msa1234150:CDS |
TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 8_2:+11369422 | Msa1234150:CDS |
GTGATGGGTCAAGGAGTTGG+AGG | 0.568802 | 8_2:+11369957 | Msa1234150:CDS |
TACACGTGTTTGCGCAGATG+CGG | 0.571672 | 8_2:+11371899 | Msa1234150:CDS |
ATGTCTATAAGATATATAAG+TGG | 0.572287 | 8_2:+11369796 | Msa1234150:CDS |
GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 8_2:-11371328 | None:intergenic |
TTTGGTGCAGTCCCAACAGA+TGG | 0.581566 | 8_2:-11372059 | None:intergenic |
GAAGCAAAAGAAAGATGATG+AGG | 0.585686 | 8_2:+11372178 | Msa1234150:CDS |
TGGTGTATACTTGTTTACTA+CGG | 0.585960 | 8_2:-11371349 | None:intergenic |
ATATTAACTTCATCTGAGAG+TGG | 0.588105 | 8_2:+11369387 | Msa1234150:CDS |
TCTTATGAAGTGATGGGTCA+AGG | 0.589029 | 8_2:+11369948 | Msa1234150:CDS |
TCAACGGTGTTCTTGAGGCA+GGG | 0.590097 | 8_2:+11371940 | Msa1234150:CDS |
ACCATATACACAGACCAGGC+TGG | 0.590176 | 8_2:+11370829 | Msa1234150:CDS |
ATTTCTCAACGGTGTTCTTG+AGG | 0.591378 | 8_2:+11371935 | Msa1234150:CDS |
GAGGCTTTAACAAATTAAGC+GGG | 0.594536 | 8_2:+11372197 | Msa1234150:exon |
TTGAAGAAAACCTTTCCCCA+AGG | 0.594796 | 8_2:+11371562 | Msa1234150:CDS |
TGAAGACTTAGAAGGCGTAA+CGG | 0.598405 | 8_2:-11372015 | None:intergenic |
GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 8_2:+11370028 | Msa1234150:CDS |
AGAACATCTTATGAAGTGAT+GGG | 0.601988 | 8_2:+11369942 | Msa1234150:CDS |
AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 8_2:+11370031 | Msa1234150:CDS |
ACGTGTTTGCGCAGATGCGG+AGG | 0.605934 | 8_2:+11371902 | Msa1234150:CDS |
ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 8_2:+11371325 | Msa1234150:CDS |
CTTCAAATACTATTATGAGG+AGG | 0.607664 | 8_2:+11371410 | Msa1234150:CDS |
TTGATATCGTTGCGCTTCAG+TGG | 0.611060 | 8_2:-11371847 | None:intergenic |
AGAACTGGACTGTCACATGT+TGG | 0.620791 | 8_2:-11369687 | None:intergenic |
AGCCACTTAAAGTCCGAAGT+AGG | 0.621799 | 8_2:-11371063 | None:intergenic |
GGGTCAAGGAGTTGGAGGCA+CGG | 0.621882 | 8_2:+11369962 | Msa1234150:CDS |
TGAGGCTTTAACAAATTAAG+CGG | 0.628414 | 8_2:+11372196 | Msa1234150:exon |
ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 8_2:-11371577 | None:intergenic |
GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 8_2:+11370898 | Msa1234150:CDS |
TTTAGTGCCAACATTCATGG+TGG | 0.641441 | 8_2:-11371820 | None:intergenic |
CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 8_2:+11371248 | Msa1234150:CDS |
GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 8_2:-11371798 | None:intergenic |
TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | 8_2:-11371369 | None:intergenic |
GCATCTGAAATATTTCTCAA+CGG | 0.661104 | 8_2:+11371924 | Msa1234150:CDS |
CATGTCGACATAAGAAACCC+CGG | 0.663279 | 8_2:-11371674 | None:intergenic |
TCAAACCATATACACAGACC+AGG | 0.671057 | 8_2:+11370825 | Msa1234150:CDS |
TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | 8_2:+11371657 | Msa1234150:CDS |
ATGTTGATAATGATAATGAG+AGG | 0.683310 | 8_2:+11371508 | Msa1234150:CDS |
TGTTGATAATGATAATGAGA+GGG | 0.689129 | 8_2:+11371509 | Msa1234150:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TGTTTTTTATGTTATAAGTT+AGG | + | chr8_2:11372227-11372246 | Msa1234150:three_prime_UTR | 15.0% |
!! | TTTAATTATGCATATAACAC+TGG | + | chr8_2:11369531-11369550 | Msa1234150:CDS | 20.0% |
!! | CAATTCACAAAATAAGAAAT+CGG | + | chr8_2:11369587-11369606 | Msa1234150:CDS | 20.0% |
!! | ATGTCTATAAGATATATAAG+TGG | + | chr8_2:11369796-11369815 | Msa1234150:CDS | 20.0% |
!! | TGTCTATAAGATATATAAGT+GGG | + | chr8_2:11369797-11369816 | Msa1234150:CDS | 20.0% |
!!! | TGAATGTTTATATTGATTGA+AGG | + | chr8_2:11370386-11370405 | Msa1234150:intron | 20.0% |
!!! | AATTTAATGTTCTGGTTTAT+GGG | + | chr8_2:11370414-11370433 | Msa1234150:intron | 20.0% |
!!! | ATGATGAAAAACTGTTTTAA+TGG | + | chr8_2:11371036-11371055 | Msa1234150:CDS | 20.0% |
! | TGAAAATTCAGTTATTGATG+CGG | + | chr8_2:11369422-11369441 | Msa1234150:CDS | 25.0% |
! | CATTTAGTGATAAAGAATCA+TGG | + | chr8_2:11369463-11369482 | Msa1234150:CDS | 25.0% |
!!! | CTTATTTTGTGAATTGTTCT+TGG | - | chr8_2:11369583-11369602 | None:intergenic | 25.0% |
! | ACAAAATAAGAAATCGGATA+AGG | + | chr8_2:11369593-11369612 | Msa1234150:CDS | 25.0% |
!!! | GCTTTAATAAATTCTAAAGC+TGG | + | chr8_2:11369909-11369928 | Msa1234150:CDS | 25.0% |
! | ACCGAACAAACAATAAATAT+CGG | + | chr8_2:11370231-11370250 | Msa1234150:CDS | 25.0% |
! | AGTACAAAATACTAACCTAA+TGG | - | chr8_2:11370257-11370276 | None:intergenic | 25.0% |
! | TGAAATTTGAATGAATGTTC+TGG | + | chr8_2:11370304-11370323 | Msa1234150:intron | 25.0% |
!! | AGGTTTAGAATTTAATGTTC+TGG | + | chr8_2:11370406-11370425 | Msa1234150:intron | 25.0% |
!!! | GAATTTAATGTTCTGGTTTA+TGG | + | chr8_2:11370413-11370432 | Msa1234150:intron | 25.0% |
!! | TGTTGTATTTTGTTCTGATT+TGG | + | chr8_2:11370662-11370681 | Msa1234150:intron | 25.0% |
! | AAAACACCTTGAAAAACATT+CGG | - | chr8_2:11370874-11370893 | None:intergenic | 25.0% |
! | TTTCGATGAGTTAACTAATT+TGG | + | chr8_2:11370966-11370985 | Msa1234150:CDS | 25.0% |
!!! | TGAAAAACTGTTTTAATGGA+AGG | + | chr8_2:11371040-11371059 | Msa1234150:CDS | 25.0% |
! | CTTTAGTCATTTCAACATTA+TGG | + | chr8_2:11371233-11371252 | Msa1234150:CDS | 25.0% |
! | TGAATAAATGAAAAGCAAGA+TGG | - | chr8_2:11371372-11371391 | None:intergenic | 25.0% |
! | CATAATAGTATTTGAAGGAA+AGG | - | chr8_2:11371407-11371426 | None:intergenic | 25.0% |
! | TTCCTTCAAATACTATTATG+AGG | + | chr8_2:11371407-11371426 | Msa1234150:CDS | 25.0% |
!!! | ATGTTGATAATGATAATGAG+AGG | + | chr8_2:11371508-11371527 | Msa1234150:CDS | 25.0% |
!!! | TGTTGATAATGATAATGAGA+GGG | + | chr8_2:11371509-11371528 | Msa1234150:CDS | 25.0% |
! | TGATGCTTTAACTAAAAAAG+CGG | + | chr8_2:11372258-11372277 | Msa1234150:three_prime_UTR | 25.0% |
! | AATTCTTGATTGTTATGCAT+TGG | + | chr8_2:11372325-11372344 | Msa1234150:three_prime_UTR | 25.0% |
ATATTAACTTCATCTGAGAG+TGG | + | chr8_2:11369387-11369406 | Msa1234150:CDS | 30.0% | |
TAAAGAATCATGGAAGTCTT+TGG | + | chr8_2:11369473-11369492 | Msa1234150:CDS | 30.0% | |
CGTTATGTTTGTAACAAAGA+AGG | + | chr8_2:11369627-11369646 | Msa1234150:CDS | 30.0% | |
TAACAAAGAAGGTTTCAAGA+AGG | + | chr8_2:11369638-11369657 | Msa1234150:CDS | 30.0% | |
AACAAAGAAGGTTTCAAGAA+GGG | + | chr8_2:11369639-11369658 | Msa1234150:CDS | 30.0% | |
TAAAGAAAAACCAGAGGAAA+GGG | + | chr8_2:11369728-11369747 | Msa1234150:CDS | 30.0% | |
! | AGCTGGAATATATTTGAAGT+TGG | + | chr8_2:11369761-11369780 | Msa1234150:CDS | 30.0% |
! | AAATGCTCTGGTTTATGTAA+TGG | - | chr8_2:11369840-11369859 | None:intergenic | 30.0% |
AGAACATCTTATGAAGTGAT+GGG | + | chr8_2:11369942-11369961 | Msa1234150:CDS | 30.0% | |
! | GAATCTTCCTTTTCGATTTT+CGG | + | chr8_2:11369986-11370005 | Msa1234150:CDS | 30.0% |
TTTAAGTCCGAAAATCGAAA+AGG | - | chr8_2:11369996-11370015 | None:intergenic | 30.0% | |
TGGATATCATAGTAAAAACC+TGG | - | chr8_2:11370110-11370129 | None:intergenic | 30.0% | |
!!! | AAGACATAGCCAGTATTTTT+TGG | + | chr8_2:11370144-11370163 | Msa1234150:CDS | 30.0% |
!!! | AGACATAGCCAGTATTTTTT+GGG | + | chr8_2:11370145-11370164 | Msa1234150:CDS | 30.0% |
CAACAAGATTATGCTCTATT+TGG | + | chr8_2:11370182-11370201 | Msa1234150:CDS | 30.0% | |
GCCGATATTTATTGTTTGTT+CGG | - | chr8_2:11370235-11370254 | None:intergenic | 30.0% | |
AACAATAAATATCGGCCATT+AGG | + | chr8_2:11370239-11370258 | Msa1234150:CDS | 30.0% | |
!! | ATGTTCTGGTTTAGAATTGA+AGG | + | chr8_2:11370318-11370337 | Msa1234150:intron | 30.0% |
CTGGTATATGTGTGTTAATT+TGG | + | chr8_2:11370343-11370362 | Msa1234150:intron | 30.0% | |
AAACACATATGATCTTTCCA+TGG | - | chr8_2:11370477-11370496 | None:intergenic | 30.0% | |
TTTCTATTTACACAGCACAA+TGG | + | chr8_2:11370621-11370640 | Msa1234150:intron | 30.0% | |
ATGATTGTCAAAACCAAGAA+AGG | - | chr8_2:11370701-11370720 | None:intergenic | 30.0% | |
! | TATGGTTTGAGGTTTCTTAT+TGG | - | chr8_2:11370815-11370834 | None:intergenic | 30.0% |
! | TCAATTCCGAATGTTTTTCA+AGG | + | chr8_2:11370865-11370884 | Msa1234150:CDS | 30.0% |
!!! | GTTTTTCAAGGTGTTTTTCA+TGG | + | chr8_2:11370877-11370896 | Msa1234150:CDS | 30.0% |
GAGAATGCAAAGAAAAATCT+CGG | + | chr8_2:11370922-11370941 | Msa1234150:CDS | 30.0% | |
AATCAGATTTCGACTACAAT+TGG | + | chr8_2:11371007-11371026 | Msa1234150:CDS | 30.0% | |
ATCAGATTTCGACTACAATT+GGG | + | chr8_2:11371008-11371027 | Msa1234150:CDS | 30.0% | |
TAAAGAATCGAACAAGTGAA+TGG | - | chr8_2:11371218-11371237 | None:intergenic | 30.0% | |
TGGTGTATACTTGTTTACTA+CGG | - | chr8_2:11371352-11371371 | None:intergenic | 30.0% | |
CTCCTCATAATAGTATTTGA+AGG | - | chr8_2:11371412-11371431 | None:intergenic | 30.0% | |
CTTCAAATACTATTATGAGG+AGG | + | chr8_2:11371410-11371429 | Msa1234150:CDS | 30.0% | |
! | CAAAGTTTTCACAATTGAGA+AGG | + | chr8_2:11371467-11371486 | Msa1234150:CDS | 30.0% |
ATTATGATCTTCAAACCTTG+GGG | - | chr8_2:11371580-11371599 | None:intergenic | 30.0% | |
GATTATGATCTTCAAACCTT+GGG | - | chr8_2:11371581-11371600 | None:intergenic | 30.0% | |
!! | ATCATAATCGACTTGATGAA+AGG | + | chr8_2:11371592-11371611 | Msa1234150:CDS | 30.0% |
!! | TCATAATCGACTTGATGAAA+GGG | + | chr8_2:11371593-11371612 | Msa1234150:CDS | 30.0% |
!! | TCGACATGTTTTCAAGATTT+TGG | + | chr8_2:11371689-11371708 | Msa1234150:CDS | 30.0% |
!! | ACATGTTTTCAAGATTTTGG+AGG | + | chr8_2:11371692-11371711 | Msa1234150:CDS | 30.0% |
!!! | CTGCACAATATGTTTTAAAG+CGG | + | chr8_2:11371757-11371776 | Msa1234150:CDS | 30.0% |
! | GCATCTGAAATATTTCTCAA+CGG | + | chr8_2:11371924-11371943 | Msa1234150:CDS | 30.0% |
!! | GAGGAGTTTCTTATTTCTAA+AGG | + | chr8_2:11371972-11371991 | Msa1234150:CDS | 30.0% |
! | TTTGGTCTTTCTTTGAACTT+TGG | - | chr8_2:11372080-11372099 | None:intergenic | 30.0% |
AAGAAAGACCAAATCCAATT+AGG | + | chr8_2:11372087-11372106 | Msa1234150:CDS | 30.0% | |
TTCTTTGACCTAATTGGATT+TGG | - | chr8_2:11372098-11372117 | None:intergenic | 30.0% | |
! | TGAGGCTTTAACAAATTAAG+CGG | + | chr8_2:11372196-11372215 | Msa1234150:exon | 30.0% |
!!! | GTGTTTGTTGCTGTTTTCAA+TGG | + | chr8_2:11369359-11369378 | Msa1234150:exon | 35.0% |
ATAACACTGGATTCTCTGTT+AGG | + | chr8_2:11369544-11369563 | Msa1234150:CDS | 35.0% | |
GTCTGCTTAATCCTAAAAAC+AGG | + | chr8_2:11369664-11369683 | Msa1234150:CDS | 35.0% | |
TTCTCATACTCAACAAGAAC+TGG | - | chr8_2:11369705-11369724 | None:intergenic | 35.0% | |
GAAAGCTAAAGAAAAACCAG+AGG | + | chr8_2:11369722-11369741 | Msa1234150:CDS | 35.0% | |
CTAAAGAAAAACCAGAGGAA+AGG | + | chr8_2:11369727-11369746 | Msa1234150:CDS | 35.0% | |
CGAGAAGTAAATGAAGTTCA+AGG | + | chr8_2:11369879-11369898 | Msa1234150:CDS | 35.0% | |
GAGAACATCTTATGAAGTGA+TGG | + | chr8_2:11369941-11369960 | Msa1234150:CDS | 35.0% | |
TCTAATGACAACTCGTCAAA+AGG | + | chr8_2:11370022-11370041 | Msa1234150:CDS | 35.0% | |
! | TGGTTTAGAATTGAAGGTTC+TGG | + | chr8_2:11370324-11370343 | Msa1234150:intron | 35.0% |
CATAAATTCCAAGGCAAGAT+AGG | - | chr8_2:11370444-11370463 | None:intergenic | 35.0% | |
TGTACAGAGCATAAATTCCA+AGG | - | chr8_2:11370453-11370472 | None:intergenic | 35.0% | |
! | CATCGTAAGAGTGTGTTATT+TGG | + | chr8_2:11370718-11370737 | Msa1234150:CDS | 35.0% |
!!! | AGACATCAGCTACTTTTGAT+TGG | + | chr8_2:11370761-11370780 | Msa1234150:CDS | 35.0% |
! | TTTTTCATGGTCTTTGCTCA+TGG | + | chr8_2:11370890-11370909 | Msa1234150:CDS | 35.0% |
! | TTTTAATGGAAGGCCTACTT+CGG | + | chr8_2:11371050-11371069 | Msa1234150:CDS | 35.0% |
CTCATTCAAATCGTATGCAT+TGG | + | chr8_2:11371094-11371113 | Msa1234150:CDS | 35.0% | |
!! | TATGCATTGGTCTTCAGTTT+GGG | + | chr8_2:11371107-11371126 | Msa1234150:CDS | 35.0% |
! | TCTTTCAATGCTTTTCTTCG+TGG | + | chr8_2:11371177-11371196 | Msa1234150:CDS | 35.0% |
ACATTATGGTTCAGAGAATG+AGG | + | chr8_2:11371247-11371266 | Msa1234150:CDS | 35.0% | |
CATTATGGTTCAGAGAATGA+GGG | + | chr8_2:11371248-11371267 | Msa1234150:CDS | 35.0% | |
! | GGTTTCGAATGTTGATGTTT+TGG | + | chr8_2:11371530-11371549 | Msa1234150:CDS | 35.0% |
CGATTATGATCTTCAAACCT+TGG | - | chr8_2:11371582-11371601 | None:intergenic | 35.0% | |
!! | TTCAAGATTTTGGAGGTCTT+AGG | + | chr8_2:11371699-11371718 | Msa1234150:CDS | 35.0% |
!! | CGCTTTAAAACATATTGTGC+AGG | - | chr8_2:11371759-11371778 | None:intergenic | 35.0% |
!!! | CACAATATGTTTTAAAGCGG+TGG | + | chr8_2:11371760-11371779 | Msa1234150:CDS | 35.0% |
!! | ACTGCTTTTGAAGACTTAGA+AGG | - | chr8_2:11372026-11372045 | None:intergenic | 35.0% |
GACAGAAATTCCTTATAGCT+CGG | + | chr8_2:11372153-11372172 | Msa1234150:CDS | 35.0% | |
GAAGCAAAAGAAAGATGATG+AGG | + | chr8_2:11372178-11372197 | Msa1234150:CDS | 35.0% | |
! | GAGGCTTTAACAAATTAAGC+GGG | + | chr8_2:11372197-11372216 | Msa1234150:exon | 35.0% |
ATCTGAGAGTGGACAATTGA+CGG | + | chr8_2:11369398-11369417 | Msa1234150:CDS | 40.0% | |
!! | TCACATGTTGGCCTGTTTTT+AGG | - | chr8_2:11369678-11369697 | None:intergenic | 40.0% |
!! | TCTTATGAAGTGATGGGTCA+AGG | + | chr8_2:11369948-11369967 | Msa1234150:CDS | 40.0% |
TCCATCTGCCCAAAAAATAC+TGG | - | chr8_2:11370156-11370175 | None:intergenic | 40.0% | |
ATTTATGCTCTGTACAGCCA+TGG | + | chr8_2:11370457-11370476 | Msa1234150:intron | 40.0% | |
TCCAGCTATGCAAAGATCAT+AGG | + | chr8_2:11370567-11370586 | Msa1234150:intron | 40.0% | |
ACCTATGATCTTTGCATAGC+TGG | - | chr8_2:11370571-11370590 | None:intergenic | 40.0% | |
TTCATTTCAGCTGCCTTTCT+TGG | + | chr8_2:11370685-11370704 | Msa1234150:intron | 40.0% | |
TGGTCTGTGTATATGGTTTG+AGG | - | chr8_2:11370826-11370845 | None:intergenic | 40.0% | |
TCAAACCATATACACAGACC+AGG | + | chr8_2:11370825-11370844 | Msa1234150:CDS | 40.0% | |
!! | GTATGCATTGGTCTTCAGTT+TGG | + | chr8_2:11371106-11371125 | Msa1234150:CDS | 40.0% |
AATCGAACAAGTGAATGGTC+TGG | - | chr8_2:11371213-11371232 | None:intergenic | 40.0% | |
! | TCATGCTGAGTTGGACTTTA+AGG | + | chr8_2:11371275-11371294 | Msa1234150:CDS | 40.0% |
TATGAGGAGGACACAACAAA+AGG | + | chr8_2:11371423-11371442 | Msa1234150:CDS | 40.0% | |
ATGAGGAGGACACAACAAAA+GGG | + | chr8_2:11371424-11371443 | Msa1234150:CDS | 40.0% | |
TTGAAGAAAACCTTTCCCCA+AGG | + | chr8_2:11371562-11371581 | Msa1234150:CDS | 40.0% | |
CATGTCGTATGTTTGAGAAC+CGG | + | chr8_2:11371655-11371674 | Msa1234150:CDS | 40.0% | |
ATGTCGTATGTTTGAGAACC+GGG | + | chr8_2:11371656-11371675 | Msa1234150:CDS | 40.0% | |
!! | AAGATTTTGGAGGTCTTAGG+TGG | + | chr8_2:11371702-11371721 | Msa1234150:CDS | 40.0% |
GATTTCAGCTTATCGACAGA+CGG | - | chr8_2:11371801-11371820 | None:intergenic | 40.0% | |
CTGAAATCCACCATGAATGT+TGG | + | chr8_2:11371813-11371832 | Msa1234150:CDS | 40.0% | |
TTTAGTGCCAACATTCATGG+TGG | - | chr8_2:11371823-11371842 | None:intergenic | 40.0% | |
GTCTTTAGTGCCAACATTCA+TGG | - | chr8_2:11371826-11371845 | None:intergenic | 40.0% | |
ATTTCTCAACGGTGTTCTTG+AGG | + | chr8_2:11371935-11371954 | Msa1234150:CDS | 40.0% | |
! | TGAAGACTTAGAAGGCGTAA+CGG | - | chr8_2:11372018-11372037 | None:intergenic | 40.0% |
AGTCGCTTCTTTGACCTAAT+TGG | - | chr8_2:11372104-11372123 | None:intergenic | 40.0% | |
TTTGCTTCTTCCGAGCTATA+AGG | - | chr8_2:11372166-11372185 | None:intergenic | 40.0% | |
AGAACTGGACTGTCACATGT+TGG | - | chr8_2:11369690-11369709 | None:intergenic | 45.0% | |
GAAAAACCAGAGGAAAGGGT+TGG | + | chr8_2:11369732-11369751 | Msa1234150:CDS | 45.0% | |
TTACAACCAACCCTTTCCTC+TGG | - | chr8_2:11369741-11369760 | None:intergenic | 45.0% | |
!! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr8_2:11369744-11369763 | Msa1234150:CDS | 45.0% |
CTCAAGTAGCACAAATGCTC+TGG | - | chr8_2:11369852-11369871 | None:intergenic | 45.0% | |
GACAACTCGTCAAAAGGAGA+TGG | + | chr8_2:11370028-11370047 | Msa1234150:CDS | 45.0% | |
AACTCGTCAAAAGGAGATGG+TGG | + | chr8_2:11370031-11370050 | Msa1234150:CDS | 45.0% | |
AATGAAGCTCTCTCGAAACC+AGG | + | chr8_2:11370089-11370108 | Msa1234150:CDS | 45.0% | |
TGTCTTCTGCAGCATCAACT+TGG | - | chr8_2:11370130-11370149 | None:intergenic | 45.0% | |
!!! | GCCAGTATTTTTTGGGCAGA+TGG | + | chr8_2:11370152-11370171 | Msa1234150:CDS | 45.0% |
AGCCACTTAAAGTCCGAAGT+AGG | - | chr8_2:11371066-11371085 | None:intergenic | 45.0% | |
!! | ATTGGTCTTCAGTTTGGGTG+AGG | + | chr8_2:11371112-11371131 | Msa1234150:CDS | 45.0% |
! | GTGAGGTCACATTTTACAGC+TGG | + | chr8_2:11371129-11371148 | Msa1234150:CDS | 45.0% |
GAGGGATAATCATGCTGAGT+TGG | + | chr8_2:11371266-11371285 | Msa1234150:CDS | 45.0% | |
ATCCCAACAGTCAGCTTATG+CGG | + | chr8_2:11371325-11371344 | Msa1234150:CDS | 45.0% | |
GATCTTCAAACCTTGGGGAA+AGG | - | chr8_2:11371575-11371594 | None:intergenic | 45.0% | |
TGTCGTATGTTTGAGAACCG+GGG | + | chr8_2:11371657-11371676 | Msa1234150:CDS | 45.0% | |
CATGTCGACATAAGAAACCC+CGG | - | chr8_2:11371677-11371696 | None:intergenic | 45.0% | |
TTGATATCGTTGCGCTTCAG+TGG | - | chr8_2:11371850-11371869 | None:intergenic | 45.0% | |
TGTTCTTGAGGCAGGGAAAA+AGG | + | chr8_2:11371947-11371966 | Msa1234150:CDS | 45.0% | |
CTGTCTGTGAACCATCTGTT+GGG | + | chr8_2:11372048-11372067 | Msa1234150:CDS | 45.0% | |
!! | GAAGTGATGGGTCAAGGAGT+TGG | + | chr8_2:11369954-11369973 | Msa1234150:CDS | 50.0% |
TGGGTGATCCTATCTTGCCT+TGG | + | chr8_2:11370433-11370452 | Msa1234150:intron | 50.0% | |
ACCATATACACAGACCAGGC+TGG | + | chr8_2:11370829-11370848 | Msa1234150:CDS | 50.0% | |
ACCAGCCTGGTCTGTGTATA+TGG | - | chr8_2:11370833-11370852 | None:intergenic | 50.0% | |
TGGTCTTTGCTCATGGCACA+TGG | + | chr8_2:11370897-11370916 | Msa1234150:CDS | 50.0% | |
GGTCTTTGCTCATGGCACAT+GGG | + | chr8_2:11370898-11370917 | Msa1234150:CDS | 50.0% | |
GGCCTACTTCGGACTTTAAG+TGG | + | chr8_2:11371061-11371080 | Msa1234150:CDS | 50.0% | |
GACCGCATAAGCTGACTGTT+GGG | - | chr8_2:11371330-11371349 | None:intergenic | 50.0% | |
AGGGTTGTCACAGTCGACAT+TGG | + | chr8_2:11371612-11371631 | Msa1234150:CDS | 50.0% | |
GGGTTGTCACAGTCGACATT+GGG | + | chr8_2:11371613-11371632 | Msa1234150:CDS | 50.0% | |
TACACGTGTTTGCGCAGATG+CGG | + | chr8_2:11371899-11371918 | Msa1234150:CDS | 50.0% | |
TCAACGGTGTTCTTGAGGCA+GGG | + | chr8_2:11371940-11371959 | Msa1234150:CDS | 50.0% | |
GCTGTCTGTGAACCATCTGT+TGG | + | chr8_2:11372047-11372066 | Msa1234150:CDS | 50.0% | |
! | TTTGGTGCAGTCCCAACAGA+TGG | - | chr8_2:11372062-11372081 | None:intergenic | 50.0% |
!! | GTGATGGGTCAAGGAGTTGG+AGG | + | chr8_2:11369957-11369976 | Msa1234150:CDS | 55.0% |
! | CGTCAAAAGGAGATGGTGGC+TGG | + | chr8_2:11370035-11370054 | Msa1234150:CDS | 55.0% |
ACTTCAACAACGCACCAGCC+TGG | - | chr8_2:11370846-11370865 | None:intergenic | 55.0% | |
GGACCGCATAAGCTGACTGT+TGG | - | chr8_2:11371331-11371350 | None:intergenic | 55.0% | |
CTCAACGGTGTTCTTGAGGC+AGG | + | chr8_2:11371939-11371958 | Msa1234150:CDS | 55.0% | |
TGAGGCAGGGAAAAAGGCAG+AGG | + | chr8_2:11371953-11371972 | Msa1234150:CDS | 55.0% | |
GGGTCAAGGAGTTGGAGGCA+CGG | + | chr8_2:11369962-11369981 | Msa1234150:CDS | 60.0% | |
ACGTGTTTGCGCAGATGCGG+AGG | + | chr8_2:11371902-11371921 | Msa1234150:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_2 | gene | 11369333 | 11372366 | 11369333 | ID=Msa1234150;Name=Msa1234150 |
chr8_2 | mRNA | 11369333 | 11372366 | 11369333 | ID=Msa1234150-mRNA-1;Parent=Msa1234150;Name=Msa1234150-mRNA-1;_AED=0.00;_eAED=0.00;_QI=45|1|1|1|1|1|2|152|800 |
chr8_2 | exon | 11369333 | 11370260 | 11369333 | ID=Msa1234150-mRNA-1:exon:4394;Parent=Msa1234150-mRNA-1 |
chr8_2 | exon | 11370695 | 11372366 | 11370695 | ID=Msa1234150-mRNA-1:exon:4395;Parent=Msa1234150-mRNA-1 |
chr8_2 | five_prime_UTR | 11369333 | 11369377 | 11369333 | ID=Msa1234150-mRNA-1:five_prime_utr;Parent=Msa1234150-mRNA-1 |
chr8_2 | CDS | 11369378 | 11370260 | 11369378 | ID=Msa1234150-mRNA-1:cds;Parent=Msa1234150-mRNA-1 |
chr8_2 | CDS | 11370695 | 11372214 | 11370695 | ID=Msa1234150-mRNA-1:cds;Parent=Msa1234150-mRNA-1 |
chr8_2 | three_prime_UTR | 11372215 | 11372366 | 11372215 | ID=Msa1234150-mRNA-1:three_prime_utr;Parent=Msa1234150-mRNA-1 |
Gene Sequence |
Protein sequence |