AlfalfaGEDB | Msa1235670

M. sativa cultivar zhongmu-4 / Msa1235670

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1235670	XP_013444514.1	67.500	400	37	6	1	307	1	400	6.13e-173	494

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1235670	sp\|F4JN35\|NTL9_ARATH	62.500	136	47	3	4	138	8	140	2.47e-52	182

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1235670	G7ZZI3	67.500	400	37	6	1	307	1	400	2.93e-173	494

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TFs/TRs:

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Gene ID	Type	Classification
Msa1235670	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1235670	MtrunA17_Chr8g0345671	67.500	400	37	6	1	307	1	400	5.64e-177	494
Msa1235670	MtrunA17_Chr8g0345691	56.265	407	71	5	6	305	13	419	2.33e-142	407
Msa1235670	MtrunA17_Chr8g0345731	67.133	143	43	2	5	143	24	166	6.75e-66	204
Msa1235670	MtrunA17_Chr8g0345711	64.667	150	45	2	1	142	1	150	3.52e-65	202
Msa1235670	MtrunA17_Chr8g0345721	57.143	175	41	2	1	141	26	200	1.15e-63	200
Msa1235670	MtrunA17_Chr8g0345741	69.841	126	38	0	16	141	2	127	1.56e-61	192
Msa1235670	MtrunA17_Chr8g0345701	55.844	154	50	5	2	141	4	153	2.30e-49	162
Msa1235670	MtrunA17_Chr5g0428991	61.194	134	48	3	3	135	23	153	3.12e-49	173
Msa1235670	MtrunA17_Chr3g0128111	62.016	129	45	4	8	135	45	170	9.73e-49	162
Msa1235670	MtrunA17_Chr3g0128151	60.448	134	49	4	3	135	20	150	1.39e-48	171

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1235670	AT4G35580.3	62.500	136	47	3	4	138	8	140	2.27e-53	182
Msa1235670	AT4G35580.1	62.500	136	47	3	4	138	8	140	2.51e-53	182
Msa1235670	AT4G35580.2	62.500	136	47	3	4	138	8	140	2.52e-53	182
Msa1235670	AT1G33060.1	59.398	133	50	3	4	135	23	152	7.28e-50	175
Msa1235670	AT1G33060.2	59.398	133	50	3	4	135	23	152	7.55e-50	175
Msa1235670	AT3G49530.2	56.204	137	57	3	3	138	11	145	7.42e-49	168
Msa1235670	AT3G49530.1	56.204	137	57	3	3	138	11	145	2.76e-48	168
Msa1235670	AT5G24590.2	56.618	136	56	3	4	138	12	145	1.04e-47	166
Msa1235670	AT4G01550.1	54.348	138	61	2	7	142	6	143	6.17e-46	161
Msa1235670	AT5G17260.1	59.231	130	49	3	4	132	5	131	5.42e-44	156

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Find 55 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACTTGTGTACTATAA+TGG	0.357000	8_2:+13768826	Msa1235670:CDS
AACCTGGTTATCATCAAAGG+TGG	0.663139	8_2:-13768899	None:intergenic
AATCTTACGGTCAAGACCAG+TGG	0.626820	8_2:-13768767	None:intergenic
AATGTTTCAGGAACCTCATC+AGG	0.458637	8_2:+13769253	Msa1235670:intron
ACAAACCTGGTTATCATCAA+AGG	0.564326	8_2:-13768902	None:intergenic
ACAAATACGCAAATAGTAAA+AGG	0.269504	8_2:+13768710	Msa1235670:CDS
ACACAATTGATCATCTCCCT+AGG	0.542532	8_2:-13769775	None:intergenic
ACTCGACTGCAGATAAACCT+AGG	0.586479	8_2:+13769758	Msa1235670:CDS
AGAATGATATGTGATGAAGG+GGG	0.758539	8_2:+13769071	Msa1235670:CDS
AGAGGTACAAACAATGTTAT+TGG	0.278639	8_2:+13768796	Msa1235670:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTACGAGAAAATAATGACG+GGG	-	chr8_2:13768597-13768616	None:intergenic	30.0%
TAAAATCCAATGATCCAGAA+TGG	+	chr8_2:13768665-13768684	Msa1235670:CDS	30.0%
TACCTCTAACCTTAATCTTA+CGG	-	chr8_2:13768783-13768802	None:intergenic	30.0%
GAGGTACAAACAATGTTATT+GGG	+	chr8_2:13768797-13768816	Msa1235670:CDS	30.0%
TTGTTGTAACAAAACAAACC+TGG	-	chr8_2:13768918-13768937	None:intergenic	30.0%
GATAGAATGATATGTGATGA+AGG	+	chr8_2:13769068-13769087	Msa1235670:CDS	30.0%
TAGAATGATATGTGATGAAG+GGG	+	chr8_2:13769070-13769089	Msa1235670:CDS	30.0%
TTGAAGGAATTCTTGATGTA+AGG	+	chr8_2:13769138-13769157	Msa1235670:intron	30.0%
AAGCATGTTTCATGTAAGAA+CGG	-	chr8_2:13769220-13769239	None:intergenic	30.0%
CATGAAACATGCTTAGAATA+TGG	+	chr8_2:13769226-13769245	Msa1235670:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	13768420	13769906	13768420	ID=Msa1235670;Name=Msa1235670
chr8_2	mRNA	13768420	13769906	13768420	ID=Msa1235670-mRNA-1;Parent=Msa1235670;Name=Msa1235670-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0\|0\|0\|1\|1\|1\|6\|0\|307
chr8_2	exon	13768420	13768576	13768420	ID=Msa1235670-mRNA-1:exon:5291;Parent=Msa1235670-mRNA-1
chr8_2	exon	13768653	13768918	13768653	ID=Msa1235670-mRNA-1:exon:5292;Parent=Msa1235670-mRNA-1
chr8_2	exon	13769038	13769154	13769038	ID=Msa1235670-mRNA-1:exon:5293;Parent=Msa1235670-mRNA-1
chr8_2	exon	13769263	13769334	13769263	ID=Msa1235670-mRNA-1:exon:5294;Parent=Msa1235670-mRNA-1
chr8_2	exon	13769507	13769572	13769507	ID=Msa1235670-mRNA-1:exon:5295;Parent=Msa1235670-mRNA-1
chr8_2	exon	13769661	13769906	13769661	ID=Msa1235670-mRNA-1:exon:5296;Parent=Msa1235670-mRNA-1
chr8_2	CDS	13768420	13768576	13768420	ID=Msa1235670-mRNA-1:cds;Parent=Msa1235670-mRNA-1
chr8_2	CDS	13768653	13768918	13768653	ID=Msa1235670-mRNA-1:cds;Parent=Msa1235670-mRNA-1
chr8_2	CDS	13769038	13769154	13769038	ID=Msa1235670-mRNA-1:cds;Parent=Msa1235670-mRNA-1
chr8_2	CDS	13769263	13769334	13769263	ID=Msa1235670-mRNA-1:cds;Parent=Msa1235670-mRNA-1
chr8_2	CDS	13769507	13769572	13769507	ID=Msa1235670-mRNA-1:cds;Parent=Msa1235670-mRNA-1
chr8_2	CDS	13769661	13769906	13769661	ID=Msa1235670-mRNA-1:cds;Parent=Msa1235670-mRNA-1

Gene Sequence

>Msa1235670

ATGACAAACTCATTTCCTGTTGGATTCAGATTCCAACCAACAGATGAAGAGCTTGTAAACCACTATCTCAAAAACAAGTTATTTGGTAATGATTCCATTGTCAACAATTTTATAGCTGAAGTCGATGTTTGCAAGTTCGAACCTTGGGACTTACCGGCTTGTTCAATCATAAAATCCAATGATCCAGAATGGTTTTTCTTTTGTCCTCGCGATTACAAATACGCAAATAGTAAAAGGTTTAACAGAAGGACAGAGTGTGGATACTGGAAAGCCACTGGTCTTGACCGTAAGATTAAGGTTAGAGGTACAAACAATGTTATTGGGACTAAGAAAACACTTGTGTACTATAATGGTTGTGCTCCTGGTGTTAAAAGCAACTGGGTGATTCATGAATATCATTCTACCACCTTTGATGATAACCAGAAAGCCGAGAAAAAAGCTGAAGAGGAAACTGATAGAATGATATGTGATGAAGGGGGGCCAAGTAAACACATGAGTTCCGATCGCGAAAATCAAGAAGCAGTTGAAGGAATTCTTGATGAACCTCATCAGGCCGAAAAGTACTTTCCTTTCTCAACATACCAGTCTTCAATCTCTGAAAATGAGATGGAATCCGAGTCGTTGAGAATGATCTACTATGGAAGCAGTGACACAGATGTTGAATTAGTCTCTACGCCCAATGGAACTTCAACGGCATTTCTTGAACATCCTAGTTCAGGAGAATACTATGCATCATTTCGAGATGATTTCGGGGGATTTGAGGCATCCTCTTGTGACTCGACTGCAGATAAACCTAGGGAGATGATCAATTGTGTTGAAATTTCTAGTGCACCTTCCACTCTAAGAAGAAACAAAAACCAGTATCATCCAAGACCAGCCACCTTCATGTCAAAAAGAGCTGCTTCAAGACGATCTCAAACATAG

Protein sequence

>Msa1235670

MTNSFPVGFRFQPTDEELVNHYLKNKLFGNDSIVNNFIAEVDVCKFEPWDLPACSIIKSNDPEWFFFCPRDYKYANSKRFNRRTECGYWKATGLDRKIKVRGTNNVIGTKKTLVYYNGCAPGVKSNWVIHEYHSTTFDDNQKAEKKAEEETDRMICDEGGPSKHMSSDRENQEAVEGILDEPHQAEKYFPFSTYQSSISENEMESESLRMIYYGSSDTDVELVSTPNGTSTAFLEHPSSGEYYASFRDDFGGFEASSCDSTADKPREMINCVEISSAPSTLRRNKNQYHPRPATFMSKRAASRRSQT*