AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1235680

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1235680 MtrunA17_Chr8g0345691 88.710 310 29 1 1 304 1 310 0.0 546
Msa1235680 MtrunA17_Chr8g0345691 84.685 222 28 1 300 515 198 419 1.36e-125 373
Msa1235680 MtrunA17_Chr8g0345671 67.183 323 84 6 1 304 1 320 1.50e-139 408
Msa1235680 MtrunA17_Chr8g0345671 52.564 234 60 5 300 515 198 398 2.22e-61 206
Msa1235680 MtrunA17_Chr8g0345721 61.017 177 38 2 1 148 26 200 2.63e-69 221
Msa1235680 MtrunA17_Chr8g0345741 69.565 138 42 0 23 160 2 139 7.47e-66 210
Msa1235680 MtrunA17_Chr8g0345711 59.740 154 61 1 1 153 1 154 1.18e-61 199
Msa1235680 MtrunA17_Chr8g0345731 61.039 154 55 2 10 160 22 173 2.07e-61 199
Msa1235680 MtrunA17_Chr5g0428991 43.777 233 103 8 8 229 21 236 1.87e-51 185
Msa1235680 MtrunA17_Chr3g0128151 53.659 164 67 4 8 165 18 178 9.50e-51 182
Msa1235680 MtrunA17_Chr3g0128111 52.071 169 68 5 15 177 45 206 1.64e-50 173
Msa1235680 MtrunA17_Chr8g0345701 56.291 151 48 5 12 148 7 153 7.18e-47 161
Msa1235680 MtrunA17_Chr6g0481091 50.649 154 67 5 12 159 6 156 1.92e-41 149
Msa1235680 MtrunA17_Chr5g0400461 44.910 167 83 4 12 170 6 171 1.39e-39 146
Msa1235680 MtrunA17_Chr3g0109821 43.956 182 92 4 12 186 6 184 1.99e-39 152
Msa1235680 MtrunA17_Chr2g0309891 46.795 156 73 4 12 160 6 158 4.22e-39 145
Msa1235680 MtrunA17_Chr5g0433781 46.452 155 74 4 12 160 6 157 1.59e-37 146
Msa1235680 MtrunA17_Chr4g0054791 45.652 184 84 7 12 185 6 183 2.38e-37 140
Msa1235680 MtrunA17_Chr1g0197361 47.682 151 72 4 15 160 11 159 5.89e-37 144
Msa1235680 MtrunA17_Chr3g0139331 46.405 153 75 4 12 160 11 160 6.20e-37 139
Msa1235680 MtrunA17_Chr5g0398971 32.881 295 170 11 9 295 4 278 3.40e-36 137
Msa1235680 MtrunA17_Chr4g0018391 45.223 157 78 5 8 159 3 156 1.24e-35 135
Msa1235680 MtrunA17_Chr8g0364791 42.384 151 78 5 15 159 9 156 1.93e-35 137
Msa1235680 MtrunA17_Chr2g0318101 40.120 167 80 4 11 160 14 177 5.29e-35 134
Msa1235680 MtrunA17_Chr3g0130101 43.046 151 77 5 15 159 10 157 9.16e-35 134
Msa1235680 MtrunA17_Chr3g0091921 47.134 157 70 8 12 160 16 167 9.47e-35 132
Msa1235680 MtrunA17_Chr8g0384201 43.046 151 77 5 15 159 9 156 1.84e-34 135
Msa1235680 MtrunA17_Chr2g0316971 50.382 131 61 3 11 140 22 149 1.89e-34 133
Msa1235680 MtrunA17_Chr1g0147421 42.484 153 82 3 12 160 27 177 2.22e-34 132
Msa1235680 MtrunA17_Chr2g0326361 44.304 158 75 5 13 160 15 169 4.93e-34 130
Msa1235680 MtrunA17_Chr4g0060931 44.586 157 74 7 12 160 17 168 5.55e-34 131
Msa1235680 MtrunA17_Chr6g0484441 43.030 165 83 7 10 168 3 162 5.80e-34 130
Msa1235680 MtrunA17_Chr4g0056541 41.379 174 92 6 8 174 3 173 7.98e-34 131
Msa1235680 MtrunA17_Chr3g0092671 44.371 151 77 3 15 160 8 156 9.04e-34 134
Msa1235680 MtrunA17_Chr7g0263931 40.881 159 81 5 11 159 10 165 1.04e-33 130
Msa1235680 MtrunA17_Chr4g0047841 44.366 142 75 3 11 151 14 152 1.06e-33 130
Msa1235680 MtrunA17_Chr1g0183741 41.447 152 84 4 12 161 10 158 1.26e-33 128
Msa1235680 MtrunA17_Chr4g0017921 46.452 155 70 6 12 159 8 156 1.52e-33 130
Msa1235680 MtrunA17_Chr1g0201021 42.105 190 84 7 5 174 13 196 3.89e-33 132
Msa1235680 MtrunA17_Chr8g0385991 42.767 159 75 5 9 156 11 164 5.61e-33 125
Msa1235680 MtrunA17_Chr7g0217721 52.344 128 55 5 14 140 21 143 6.42e-33 128
Msa1235680 MtrunA17_Chr7g0252971 40.000 170 78 6 11 161 7 171 6.65e-33 128
Msa1235680 MtrunA17_Chr1g0200561 43.791 153 78 5 12 159 19 168 1.00e-32 128
Msa1235680 MtrunA17_Chr7g0217711 50.394 127 57 4 14 139 21 142 1.08e-32 123
Msa1235680 MtrunA17_Chr8g0361731 39.521 167 83 5 15 166 17 180 1.34e-32 128
Msa1235680 MtrunA17_Chr2g0312321 40.237 169 87 5 12 173 11 172 1.94e-32 126
Msa1235680 MtrunA17_Chr2g0309331 33.197 244 136 9 12 239 10 242 3.38e-32 126
Msa1235680 MtrunA17_Chr6g0453451 45.752 153 71 6 12 163 20 161 3.80e-32 125
Msa1235680 MtrunA17_Chr7g0261411 41.892 148 81 4 12 157 10 154 3.95e-32 125
Msa1235680 MtrunA17_Chr8g0372121 41.830 153 81 5 12 159 6 155 6.20e-32 125
Msa1235680 MtrunA17_Chr1g0197351 43.949 157 73 4 15 159 45 198 7.10e-32 128
Msa1235680 MtrunA17_Chr4g0076731 43.226 155 80 5 10 160 52 202 9.10e-32 127
Msa1235680 MtrunA17_Chr5g0417001 38.150 173 89 5 9 166 10 179 1.03e-31 126
Msa1235680 MtrunA17_Chr4g0042561 43.750 160 71 7 12 159 9 161 1.09e-31 123
Msa1235680 MtrunA17_Chr3g0124761 41.139 158 78 5 11 159 6 157 1.14e-31 123
Msa1235680 MtrunA17_Chr5g0405211 43.137 153 79 5 12 159 8 157 1.71e-31 124
Msa1235680 MtrunA17_Chr6g0461661 43.846 130 69 3 12 140 18 144 3.06e-31 124
Msa1235680 MtrunA17_Chr8g0384721 33.945 218 110 9 12 209 7 210 4.17e-31 122
Msa1235680 MtrunA17_Chr7g0214071 39.623 159 86 4 11 165 14 166 4.63e-31 120
Msa1235680 MtrunA17_Chr2g0311661 38.824 170 82 6 10 159 18 185 5.53e-31 121
Msa1235680 MtrunA17_Chr6g0453131 40.719 167 80 6 9 160 12 174 5.57e-31 124
Msa1235680 MtrunA17_Chr3g0144271 45.736 129 67 2 12 139 23 149 6.31e-31 124
Msa1235680 MtrunA17_Chr7g0253011 46.667 135 65 5 8 139 14 144 6.31e-31 123
Msa1235680 MtrunA17_Chr3g0130731 41.250 160 79 5 12 162 7 160 6.36e-31 121
Msa1235680 MtrunA17_Chr2g0311651 39.227 181 88 6 10 170 19 197 7.71e-31 122
Msa1235680 MtrunA17_Chr4g0026141 39.521 167 82 5 1 156 1 159 2.23e-30 119
Msa1235680 MtrunA17_Chr2g0321741 44.286 140 72 4 23 161 2 136 5.14e-30 120
Msa1235680 MtrunA17_Chr2g0318081 35.784 204 111 8 12 206 16 208 5.26e-30 120
Msa1235680 MtrunA17_Chr5g0417791 39.412 170 88 7 12 171 3 167 1.04e-29 117
Msa1235680 MtrunA17_Chr8g0346001 38.144 194 87 8 11 176 14 202 2.26e-29 120
Msa1235680 MtrunA17_Chr8g0359921 35.321 218 123 9 12 218 14 224 2.64e-29 117
Msa1235680 MtrunA17_Chr4g0038751 42.568 148 80 4 15 160 18 162 6.49e-29 116
Msa1235680 MtrunA17_Chr3g0131911 36.905 168 87 5 12 165 14 176 3.63e-27 109
Msa1235680 MtrunA17_Chr7g0266701 36.310 168 90 6 9 161 1 166 2.73e-26 107
Msa1235680 MtrunA17_Chr5g0442771 31.111 270 147 10 15 252 21 283 4.55e-26 108
Msa1235680 MtrunA17_Chr2g0321631 37.821 156 84 5 13 156 5 159 1.38e-25 105
Msa1235680 MtrunA17_Chr8g0384351 33.333 171 88 7 12 176 10 160 6.36e-19 84.7
Msa1235680 MtrunA17_Chr4g0050701 27.841 176 100 7 12 173 11 173 4.78e-18 82.4
Msa1235680 MtrunA17_Chr3g0113001 42.478 113 51 6 63 163 13 123 5.92e-18 84.7
Msa1235680 MtrunA17_Chr7g0251651 30.636 173 99 7 12 174 18 179 2.57e-16 77.4
Msa1235680 MtrunA17_Chr3g0130321 32.298 161 84 4 12 156 7 158 2.56e-15 75.1
Msa1235680 MtrunA17_Chr7g0243371 38.095 84 50 2 58 139 6 89 3.51e-14 68.9
Msa1235680 MtrunA17_Chr3g0113031 41.748 103 46 6 78 170 3 101 5.89e-13 69.3
Msa1235680 MtrunA17_Chr7g0251661 30.827 133 78 5 12 139 10 133 6.39e-13 66.6
Msa1235680 MtrunA17_Chr7g0274971 25.581 215 137 9 18 219 11 215 8.65e-12 64.7
Msa1235680 MtrunA17_Chr3g0113011 62.500 48 17 1 13 60 20 66 1.22e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1235680 AT4G01550.1 52.809 178 71 4 14 185 6 176 1.12e-54 191
Msa1235680 AT4G35580.2 51.852 162 69 4 8 163 5 163 3.04e-50 180
Msa1235680 AT4G35580.3 51.852 162 69 4 8 163 5 163 3.11e-50 180
Msa1235680 AT4G35580.1 51.852 162 69 4 8 163 5 163 3.81e-50 180
Msa1235680 AT3G49530.2 51.235 162 67 5 8 161 9 166 1.45e-49 176
Msa1235680 AT3G49530.1 51.235 162 67 5 8 161 9 166 5.20e-49 176
Msa1235680 AT5G24590.2 51.875 160 69 4 8 161 9 166 3.98e-48 173
Msa1235680 AT1G33060.1 53.165 158 65 4 8 159 20 174 9.44e-48 176
Msa1235680 AT1G33060.2 53.165 158 65 4 8 159 20 174 9.80e-48 176
Msa1235680 AT4G01520.1 38.428 229 120 7 13 228 5 225 2.04e-44 159
Msa1235680 AT4G01540.4 38.596 228 119 7 14 228 6 225 7.79e-43 157
Msa1235680 AT4G01540.2 38.596 228 119 7 14 228 6 225 9.47e-43 157
Msa1235680 AT4G01540.3 38.596 228 119 7 14 228 6 225 1.51e-42 157
Msa1235680 AT4G01540.1 38.596 228 119 7 14 228 6 225 2.49e-42 157
Msa1235680 AT3G10490.1 48.684 152 68 4 15 159 30 178 4.15e-41 148
Msa1235680 AT4G17980.1 47.468 158 74 3 12 161 6 162 4.61e-41 149
Msa1235680 AT4G17980.2 47.468 158 74 3 12 161 6 162 1.05e-40 149
Msa1235680 AT3G10480.2 48.344 151 69 4 15 159 30 177 2.49e-40 151
Msa1235680 AT3G10480.1 48.026 152 69 4 15 159 30 178 2.51e-40 151
Msa1235680 AT3G10490.2 48.684 152 68 4 15 159 30 178 3.45e-40 151
Msa1235680 AT5G17260.1 48.387 155 70 4 12 159 6 157 1.76e-39 150
Msa1235680 AT3G17730.1 44.693 179 80 6 12 184 6 171 4.51e-39 143
Msa1235680 AT3G03200.1 48.387 155 70 4 12 159 6 157 1.53e-38 147
Msa1235680 AT5G46590.1 48.125 160 74 5 12 164 6 163 9.82e-38 140
Msa1235680 AT1G65910.1 48.387 155 71 4 12 160 6 157 1.75e-37 146
Msa1235680 AT1G02230.1 46.053 152 77 4 13 161 4 153 1.78e-37 141
Msa1235680 AT5G61430.1 46.497 157 71 7 12 160 16 167 1.91e-36 138
Msa1235680 AT2G24430.2 45.161 155 77 5 12 161 16 167 3.02e-36 137
Msa1235680 AT2G24430.1 45.161 155 77 5 12 161 16 167 3.02e-36 137
Msa1235680 AT2G27300.1 39.594 197 101 7 1 193 11 193 3.79e-36 137
Msa1235680 AT1G12260.2 41.420 169 91 5 8 171 3 168 1.81e-35 135
Msa1235680 AT1G12260.1 41.420 169 91 5 8 171 3 168 2.39e-35 136
Msa1235680 AT1G32510.1 44.444 171 74 6 12 166 6 171 3.00e-35 133
Msa1235680 AT5G46590.2 50.769 130 61 3 12 140 6 133 7.25e-35 132
Msa1235680 AT5G62380.2 36.364 231 125 8 8 228 3 221 9.56e-35 134
Msa1235680 AT5G62380.1 36.364 231 125 8 8 228 3 221 9.56e-35 134
Msa1235680 AT5G39610.1 44.872 156 73 6 12 159 20 170 1.10e-34 132
Msa1235680 AT5G07680.2 45.570 158 71 7 12 160 3 154 1.47e-34 132
Msa1235680 AT5G07680.1 45.570 158 71 7 12 160 17 168 1.66e-34 132
Msa1235680 AT5G39820.1 48.551 138 67 3 10 146 18 152 1.98e-34 132
Msa1235680 AT3G10480.3 40.541 185 67 6 15 159 30 211 2.25e-34 136
Msa1235680 AT5G04410.1 45.752 153 72 5 15 160 12 160 4.19e-34 135
Msa1235680 AT3G15170.1 45.223 157 75 5 12 160 20 173 6.55e-34 130
Msa1235680 AT3G10500.1 47.368 152 71 5 15 160 12 160 7.58e-34 135
Msa1235680 AT3G15510.1 41.011 178 83 6 16 174 21 195 1.03e-33 131
Msa1235680 AT1G01720.1 42.857 161 76 6 9 159 4 158 1.17e-33 129
Msa1235680 AT3G44290.2 42.593 162 78 6 1 161 11 158 1.46e-33 127
Msa1235680 AT5G53950.1 49.618 131 62 3 10 139 15 142 1.48e-33 131
Msa1235680 AT3G04060.1 42.308 156 78 6 12 159 20 171 1.59e-33 130
Msa1235680 AT1G54330.1 47.020 151 74 4 12 159 6 153 1.65e-33 129
Msa1235680 AT1G62700.1 43.312 157 81 5 8 159 3 156 1.91e-33 131
Msa1235680 AT1G62700.2 43.312 157 81 5 8 159 3 156 1.91e-33 131
Msa1235680 AT1G33280.1 46.053 152 75 5 12 159 8 156 2.83e-33 129
Msa1235680 AT1G26870.1 42.857 161 74 5 15 160 19 176 3.31e-33 131
Msa1235680 AT1G76420.1 42.038 157 77 5 12 160 22 172 3.90e-33 129
Msa1235680 AT3G18400.1 42.593 162 81 6 10 164 3 159 4.24e-33 128
Msa1235680 AT1G71930.2 43.137 153 79 5 12 159 9 158 4.37e-33 129
Msa1235680 AT1G71930.1 43.137 153 79 5 12 159 9 158 4.37e-33 129
Msa1235680 AT3G29035.1 49.231 130 60 5 12 140 24 148 6.74e-33 128
Msa1235680 AT5G08790.1 41.875 160 76 6 11 159 6 159 6.74e-33 127
Msa1235680 AT1G69490.1 41.772 158 77 6 12 159 9 161 6.81e-33 126
Msa1235680 AT1G61110.1 41.520 171 78 6 7 159 11 177 1.28e-32 127
Msa1235680 AT5G66300.1 42.857 154 79 5 12 159 12 162 1.62e-32 126
Msa1235680 AT3G04070.2 41.212 165 78 5 12 160 10 171 1.77e-32 127
Msa1235680 AT3G44290.1 42.593 162 78 6 1 161 11 158 1.79e-32 127
Msa1235680 AT1G34190.1 46.753 154 69 5 15 160 19 167 2.13e-32 130
Msa1235680 AT1G79580.3 45.395 152 77 5 12 159 17 166 3.09e-32 127
Msa1235680 AT1G79580.5 45.395 152 77 5 12 159 17 166 3.09e-32 127
Msa1235680 AT1G79580.4 45.395 152 77 5 12 159 17 166 3.09e-32 127
Msa1235680 AT1G79580.2 45.395 152 77 5 12 159 17 166 3.09e-32 127
Msa1235680 AT1G79580.1 45.395 152 77 5 12 159 17 166 3.09e-32 127
Msa1235680 AT5G09330.5 45.033 151 74 4 15 159 9 156 5.11e-32 129
Msa1235680 AT5G09330.2 45.033 151 74 4 15 159 9 156 5.11e-32 129
Msa1235680 AT5G09330.4 45.033 151 74 4 15 159 9 156 5.11e-32 129
Msa1235680 AT5G09330.3 45.033 151 74 4 15 159 9 156 5.11e-32 129
Msa1235680 AT5G09330.1 45.033 151 74 4 15 159 9 156 5.11e-32 129
Msa1235680 AT3G15500.1 39.080 174 90 7 12 177 14 179 5.23e-32 125
Msa1235680 AT1G34180.3 46.053 152 73 4 15 160 19 167 1.19e-31 127
Msa1235680 AT5G22290.1 32.932 249 143 9 2 247 19 246 1.32e-31 125
Msa1235680 AT5G18270.2 41.667 156 79 5 12 159 21 172 1.57e-31 124
Msa1235680 AT2G02450.1 43.624 149 76 5 15 159 54 198 1.67e-31 125
Msa1235680 AT4G27410.2 35.238 210 111 9 12 210 14 209 1.79e-31 123
Msa1235680 AT2G02450.2 43.624 149 76 5 15 159 54 198 1.86e-31 126
Msa1235680 AT1G56010.2 40.764 157 80 4 12 159 19 171 2.24e-31 124
Msa1235680 AT2G17040.1 40.000 165 88 5 15 171 9 170 2.25e-31 122
Msa1235680 AT4G10350.1 42.604 169 86 6 12 172 9 174 3.37e-31 124
Msa1235680 AT2G18060.3 42.484 153 80 5 12 159 9 158 3.63e-31 124
Msa1235680 AT2G18060.1 42.484 153 80 5 12 159 9 158 3.63e-31 124
Msa1235680 AT1G34180.1 45.395 152 74 4 15 160 19 167 4.52e-31 127
Msa1235680 AT5G64060.1 42.857 154 73 5 15 159 9 156 5.16e-31 124
Msa1235680 AT1G52890.1 38.462 182 97 6 6 179 8 182 5.50e-31 122
Msa1235680 AT5G18270.1 41.026 156 80 5 12 159 21 172 5.89e-31 123
Msa1235680 AT4G36160.1 41.830 153 81 5 12 159 10 159 1.08e-30 123
Msa1235680 AT4G36160.3 41.830 153 81 5 12 159 10 159 1.08e-30 123
Msa1235680 AT4G36160.2 41.830 153 81 5 12 159 14 163 1.18e-30 123
Msa1235680 AT5G04395.1 42.958 142 67 4 12 140 28 168 1.19e-30 118
Msa1235680 AT3G04070.1 45.455 132 65 4 12 139 10 138 1.44e-30 122
Msa1235680 AT1G02250.1 42.857 154 83 4 13 163 4 155 1.88e-30 122
Msa1235680 AT5G63790.1 38.251 183 85 7 11 171 49 225 4.21e-30 120
Msa1235680 AT5G63790.2 38.251 183 85 7 11 171 59 235 5.28e-30 120
Msa1235680 AT3G12910.1 30.216 278 155 9 15 262 24 292 2.11e-29 118
Msa1235680 AT4G27410.3 33.036 224 114 9 12 210 14 226 2.55e-29 118
Msa1235680 AT5G13180.1 38.462 156 85 4 11 161 13 162 2.88e-29 116
Msa1235680 AT1G01010.1 42.262 168 80 5 14 173 5 163 3.13e-29 120
Msa1235680 AT3G04420.2 40.588 170 97 4 13 180 4 171 3.36e-29 117
Msa1235680 AT3G04420.1 42.384 151 83 4 13 161 4 152 5.05e-29 117
Msa1235680 AT1G77450.1 38.095 168 89 5 11 169 9 170 6.66e-29 115
Msa1235680 AT2G43000.1 34.872 195 108 7 15 195 21 210 8.60e-29 115
Msa1235680 AT3G61910.1 39.053 169 80 6 11 159 10 175 9.02e-29 117
Msa1235680 AT4G28530.1 37.725 167 85 5 12 161 10 174 1.28e-28 117
Msa1235680 AT5G22380.1 40.506 158 82 5 10 156 3 159 1.70e-28 113
Msa1235680 AT1G34180.4 42.683 164 73 5 15 160 19 179 1.93e-28 118
Msa1235680 AT3G12977.1 36.957 184 96 7 12 184 18 192 3.09e-28 114
Msa1235680 AT1G34180.2 42.073 164 74 5 15 160 19 179 4.10e-28 118
Msa1235680 AT1G02220.1 43.537 147 78 4 12 157 3 145 5.60e-28 115
Msa1235680 AT2G46770.1 38.462 169 81 6 11 159 15 180 7.18e-28 115
Msa1235680 AT2G33480.2 40.000 155 81 5 11 161 14 160 7.33e-28 112
Msa1235680 AT2G33480.1 39.490 157 81 5 11 161 14 162 1.33e-27 112
Msa1235680 AT1G52880.1 35.849 212 111 7 16 211 21 223 3.14e-27 112
Msa1235680 AT1G32770.1 40.476 168 74 8 12 159 16 177 4.45e-27 112
Msa1235680 AT1G32870.2 44.156 154 73 6 15 160 13 161 1.26e-24 107
Msa1235680 AT1G32870.1 44.156 154 73 6 15 160 13 161 1.29e-24 107
Msa1235680 AT3G44350.2 33.750 160 96 4 10 160 3 161 1.48e-24 102
Msa1235680 AT1G32870.3 44.156 154 73 6 15 160 49 197 2.00e-24 107
Msa1235680 AT3G44350.1 36.842 133 80 3 10 139 3 134 1.19e-23 97.8
Msa1235680 AT3G04430.1 37.778 135 68 5 18 140 6 136 2.11e-21 92.4
Msa1235680 AT5G61430.2 41.509 106 52 5 63 160 1 104 2.68e-18 85.5
Msa1235680 AT5G64530.2 35.878 131 66 6 11 139 2 116 1.11e-17 80.9
Msa1235680 AT3G12977.2 37.600 125 63 5 70 184 20 139 1.24e-17 82.4
Msa1235680 AT5G64530.1 35.385 130 66 6 12 139 3 116 1.46e-17 81.3
Msa1235680 AT1G56010.1 40.404 99 48 3 70 159 8 104 5.09e-17 81.3
Msa1235680 AT4G10350.2 38.655 119 64 4 61 172 11 127 5.17e-17 82.0
Msa1235680 AT4G28530.2 41.284 109 47 3 12 105 10 116 5.28e-17 82.4
Msa1235680 AT3G10490.4 46.250 80 34 3 87 159 1 78 1.79e-15 78.2
Msa1235680 AT3G10490.3 46.250 80 34 3 87 159 1 78 1.79e-15 78.2
Msa1235680 AT3G56530.1 32.000 150 94 5 12 156 52 198 4.22e-13 70.9
Msa1235680 AT2G33480.3 36.735 98 54 3 68 159 8 103 1.07e-12 67.8
Msa1235680 AT3G55210.1 30.723 166 97 9 6 156 4 166 3.54e-12 67.4
Msa1235680 AT5G14490.4 28.409 176 102 6 12 169 55 224 6.81e-11 64.3
Msa1235680 AT5G14490.1 28.409 176 102 6 12 169 58 227 7.25e-11 64.3

Find 103 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGATTCCATATTTATTTC+TGG 0.145339 8_2:-13785949 None:intergenic
ATTGATTCCATATTTATTTC+TGG 0.145339 8_2:-13786406 None:intergenic
AGTACCTTTCGAGATGATTT+TGG 0.182200 8_2:+13787160 Msa1235680:CDS
AGGGGTAGCAATAATATTAT+TGG 0.231520 8_2:+13785062 Msa1235680:CDS
CTTAATCTTTCGATCCTTTC+CGG 0.233046 8_2:-13785036 None:intergenic
GCATCGTGAATTGGAGAGTT+TGG 0.259585 8_2:-13786493 None:intergenic
AAGTTTAATTCTAACATATT+AGG 0.265409 8_2:+13787417 Msa1235680:three_prime_UTR
AATGATTATTGATGGGGATT+TGG 0.277207 8_2:+13786134 Msa1235680:CDS
AAATATGGAATCAATATTTC+AGG 0.281347 8_2:+13785957 Msa1235680:CDS
AAATATGGAATCAATATTTC+AGG 0.281347 8_2:+13786414 Msa1235680:CDS
ATAATATCATAGGCTACTTT+TGG 0.286296 8_2:-13784476 None:intergenic
AATGATTATTGACGGGGATT+TGG 0.293193 8_2:+13786591 Msa1235680:CDS
GATGTTGTCATTTCTAAAAT+AGG 0.297612 8_2:-13786058 None:intergenic
GATGTTGTCATTTCTAAAAT+AGG 0.297612 8_2:-13786515 None:intergenic
TACTATAGTGGTCGTGTTCC+TGG 0.304206 8_2:+13785104 Msa1235680:CDS
GCATCGTGAATTGACGAGTT+TGG 0.308125 8_2:-13786036 None:intergenic
AAAACTAAAATTGAGGAATA+AGG 0.314591 8_2:-13787558 None:intergenic
CGGAAAGGATCGAAAGATTA+AGG 0.317340 8_2:+13785037 Msa1235680:CDS
TTTAAAAGGACAACTAATAA+TGG 0.327657 8_2:+13784999 Msa1235680:CDS
CCTTAGGAACAGTTGTAAAA+TGG 0.330273 8_2:+13787504 Msa1235680:three_prime_UTR
GGGGTAGCAATAATATTATT+GGG 0.331309 8_2:+13785063 Msa1235680:CDS
TTCAACTGCAGATATATCTT+TGG 0.332842 8_2:+13787207 Msa1235680:CDS
CAAAGAGTAAGAGGTTTAAA+AGG 0.342416 8_2:+13784985 Msa1235680:CDS
ACCACTAAGCTAACACTTCA+TGG 0.352118 8_2:-13787440 None:intergenic
GTCAAGAGTCGGAGGAAATA+AGG 0.354940 8_2:-13784669 None:intergenic
CTAAAATAGGCATCGTGAAT+TGG 0.355860 8_2:-13786502 None:intergenic
TCAACGCATGGTAATGTTCC+TGG 0.366029 8_2:+13787085 Msa1235680:CDS
CATCGTGAATTGACGAGTTT+GGG 0.371660 8_2:-13786035 None:intergenic
TACTTTGCCAGAAATAAATA+TGG 0.372071 8_2:+13785942 Msa1235680:CDS
TACTTTGCCAGAAATAAATA+TGG 0.372071 8_2:+13786399 Msa1235680:CDS
TCCTCTTCAATGGTTTCAAA+TGG 0.379573 8_2:-13786093 None:intergenic
TCCTCTTCAATGGTTTCAAA+TGG 0.379573 8_2:-13786550 None:intergenic
GGATCGAAAGATTAAGGTTA+GGG 0.381317 8_2:+13785043 Msa1235680:CDS
GTCAGTTCAATGATTATTGA+TGG 0.382340 8_2:+13786126 Msa1235680:CDS
TTTCTTGAACATCCTAGTTC+AGG 0.382346 8_2:+13787034 Msa1235680:CDS
GATAGAAAACAGGTGCTTCC+AGG 0.383330 8_2:-13787103 None:intergenic
ATAAGTATGCAAAGAGTAAG+AGG 0.388091 8_2:+13784976 Msa1235680:CDS
TTTGCATACTTATAATCAAT+AGG 0.393689 8_2:-13784966 None:intergenic
ATGAATCATTTGATCAAGAT+AGG 0.394555 8_2:-13787387 None:intergenic
TTCCTGGTGTTAACAGCAGC+TGG 0.401870 8_2:+13785120 Msa1235680:CDS
GAACTTATCTTCCTCTTCAA+TGG 0.404183 8_2:-13786103 None:intergenic
GAACTTATCTTCCTCTTCAA+TGG 0.404183 8_2:-13786560 None:intergenic
CATCGTGAATTGGAGAGTTT+GGG 0.404562 8_2:-13786492 None:intergenic
GAGGTTGATCATAATATCAT+AGG 0.407299 8_2:-13784486 None:intergenic
AGAGAGATATGAAGAGAAAG+TGG 0.412084 8_2:-13784578 None:intergenic
AAGACTCTTGTTTACTATAG+TGG 0.415807 8_2:+13785092 Msa1235680:CDS
CCAGTCCGAGTCGTTGAAAA+TGG 0.421990 8_2:+13786170 Msa1235680:CDS
CCAGTCCGAGTCGTTGAAAA+TGG 0.421990 8_2:+13786627 Msa1235680:CDS
GCCATGAAGTGTTAGCTTAG+TGG 0.422146 8_2:+13787439 Msa1235680:three_prime_UTR
TGGCTGGTCTTGGATGATAC+TGG 0.422975 8_2:-13787288 None:intergenic
CGATAGTTACATTCTTAATA+CGG 0.429588 8_2:+13787593 Msa1235680:three_prime_UTR
TCATTATTAGTTCAGTTGCT+TGG 0.431816 8_2:-13787359 None:intergenic
GACATGAAGATGGCTGGTCT+TGG 0.436307 8_2:-13787298 None:intergenic
AGGATCGAAAGATTAAGGTT+AGG 0.440394 8_2:+13785042 Msa1235680:CDS
AGACATAGTTCTAATTCCTT+AGG 0.443594 8_2:+13787488 Msa1235680:three_prime_UTR
TCGTTGAAAATGGTCTACTA+TGG 0.448952 8_2:+13786180 Msa1235680:CDS
TCGTTGAAAATGGTCTACTA+TGG 0.448952 8_2:+13786637 Msa1235680:CDS
ATTCTTTAAAGATAGAAAAC+AGG 0.461828 8_2:-13787113 None:intergenic
TAAGTTCAATGATTATTGAC+GGG 0.464748 8_2:+13786584 Msa1235680:CDS
ACTCTTGACCATGTTCCTGT+TGG 0.471228 8_2:+13784683 Msa1235680:CDS
TGATATTCTTGATACTTCAA+TGG 0.472818 8_2:+13787009 Msa1235680:CDS
TTCAATCTCTGAAAATGAGC+AGG 0.480194 8_2:+13786002 Msa1235680:CDS
TTCAATCTCTGAAAATGAGC+AGG 0.480194 8_2:+13786459 Msa1235680:CDS
TCGAAAAGAGCTGCTTTAAG+AGG 0.483514 8_2:+13787319 Msa1235680:CDS
TCAGTTCAATGATTATTGAT+GGG 0.487940 8_2:+13786127 Msa1235680:CDS
CTTACAAGCTCTTCATCTGT+TGG 0.488308 8_2:-13784719 None:intergenic
GAAATTATCATTAATTAAAG+TGG 0.491758 8_2:-13787536 None:intergenic
GCAGAGTATTCGCCTGAACT+AGG 0.495091 8_2:-13787046 None:intergenic
TCGGAACTCATGTGTCTACT+TGG 0.499283 8_2:-13785761 None:intergenic
GGTCTGAATCTGAATCCAAC+AGG 0.502719 8_2:-13784698 None:intergenic
GTAAGTTCAATGATTATTGA+CGG 0.508476 8_2:+13786583 Msa1235680:CDS
TCCATTTGAAACCATTGAAG+AGG 0.524212 8_2:+13786549 Msa1235680:CDS
TCCATTTGAAACCATTGAAG+AGG 0.526651 8_2:+13786092 Msa1235680:CDS
CAGTTCAATGATTATTGATG+GGG 0.529396 8_2:+13786128 Msa1235680:CDS
ACAAACCTTGTCATCTTCAA+AGG 0.536374 8_2:-13785168 None:intergenic
GGAATCAATATTTCAGGCAC+AGG 0.539733 8_2:+13785963 Msa1235680:CDS
GGAATCAATATTTCAGGCAC+AGG 0.539733 8_2:+13786420 Msa1235680:CDS
GATGCAGATATATGTGATGA+AGG 0.540324 8_2:+13785734 Msa1235680:CDS
TATGAACCTTGGGAGTTACC+AGG 0.553928 8_2:+13784818 Msa1235680:CDS
TGTATGCAAGTATGAACCTT+GGG 0.557609 8_2:+13784808 Msa1235680:CDS
TAAAATCAGATGACCCAGAA+TGG 0.564520 8_2:+13784931 Msa1235680:CDS
ATTAAGAATGTAACTATCGT+TGG 0.564747 8_2:-13787589 None:intergenic
TGCTGAAGTAGTCTCTATGC+CGG 0.566096 8_2:+13786218 Msa1235680:CDS
AATTAGAACTATGTCTCTTG+AGG 0.567105 8_2:-13787481 None:intergenic
AGCTATAACATTGTCGACAA+TGG 0.576088 8_2:-13784777 None:intergenic
TCCTGGTGTTAACAGCAGCT+GGG 0.577857 8_2:+13785121 Msa1235680:CDS
GTGAATTGACGAGTTTGGGA+TGG 0.583990 8_2:-13786031 None:intergenic
ATCTGCAGTTGAATCACAAG+AGG 0.597794 8_2:-13787197 None:intergenic
ATGCAGATATATGTGATGAA+GGG 0.608515 8_2:+13785735 Msa1235680:CDS
TACCACCTTTGAAGATGACA+AGG 0.610149 8_2:+13785163 Msa1235680:CDS
ATCTGAATCCAACAGGAACA+TGG 0.616076 8_2:-13784691 None:intergenic
ACCCAGCTGCTGTTAACACC+AGG 0.624004 8_2:-13785122 None:intergenic
AACCTTGTCATCTTCAAAGG+TGG 0.630537 8_2:-13785165 None:intergenic
GTGAATTGGAGAGTTTGGGA+TGG 0.634986 8_2:-13786488 None:intergenic
ACAGGAACATGGTCAAGAGT+CGG 0.636129 8_2:-13784680 None:intergenic
AAATTGTTGAAATCAACGCA+TGG 0.648209 8_2:+13787073 Msa1235680:CDS
TGCAGATATATGTGATGAAG+GGG 0.648801 8_2:+13785736 Msa1235680:CDS
TGCTGAAGTAGTCTCTACGC+CGG 0.650251 8_2:+13786675 Msa1235680:CDS
GCTGCTTTAAGAGGATCTTG+AGG 0.651591 8_2:+13787328 Msa1235680:CDS
AAGTTCAATGATTATTGACG+GGG 0.652484 8_2:+13786585 Msa1235680:CDS
ATGTATGCAAGTATGAACCT+TGG 0.657459 8_2:+13784807 Msa1235680:CDS
GGAACATGGTCAAGAGTCGG+AGG 0.664688 8_2:-13784677 None:intergenic
GATCGAAAGATTAAGGTTAG+GGG 0.678144 8_2:+13785044 Msa1235680:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTATTTTTTTACC+TGG - chr8_2:13784839-13784858 None:intergenic 10.0%
!!! TTTTGTTTTGAAATTTGTTT+TGG - chr8_2:13784618-13784637 None:intergenic 15.0%
!!! TTTTATGAGAAAATAATGAT+GGG - chr8_2:13784865-13784884 None:intergenic 15.0%
!!! TTTTTATGAGAAAATAATGA+TGG - chr8_2:13784866-13784885 None:intergenic 15.0%
!! AAAGATGAAAAACATTAAAA+AGG - chr8_2:13784894-13784913 None:intergenic 15.0%
!! ATATCTATTATCATTTATCA+AGG - chr8_2:13785837-13785856 None:intergenic 15.0%
!!! AGAACTTATATTTGTTTTAT+AGG + chr8_2:13785912-13785931 Msa1235680:intron 15.0%
!! ATTTCTATTATCATTTATCA+AGG - chr8_2:13786294-13786313 None:intergenic 15.0%
!!! AGAACTTATATTTGTTTTAT+AGG + chr8_2:13785912-13785931 Msa1235680:intron 15.0%
!! TTTGAACAATATATATTTAC+CGG - chr8_2:13786697-13786716 None:intergenic 15.0%
!! AAGTTTAATTCTAACATATT+AGG + chr8_2:13787417-13787436 Msa1235680:three_prime_UTR 15.0%
!! GAAATTATCATTAATTAAAG+TGG - chr8_2:13787539-13787558 None:intergenic 15.0%
!! AACAAAAACAAAATATAGGA+AGG - chr8_2:13784447-13784466 None:intergenic 20.0%
!! TTTATGAGAAAATAATGATG+GGG - chr8_2:13784864-13784883 None:intergenic 20.0%
!! TTTGCATACTTATAATCAAT+AGG - chr8_2:13784969-13784988 None:intergenic 20.0%
!! TTTAAAAGGACAACTAATAA+TGG + chr8_2:13784999-13785018 Msa1235680:CDS 20.0%
!!! TTACTATTTTCCTATATGAT+TGG + chr8_2:13785280-13785299 Msa1235680:intron 20.0%
!! TATGATACCAAAAGAAAAAA+GGG - chr8_2:13785361-13785380 None:intergenic 20.0%
!! ATATGATACCAAAAGAAAAA+AGG - chr8_2:13785362-13785381 None:intergenic 20.0%
!!! TTCAGTTTTTGAATGTTAAT+AGG + chr8_2:13785541-13785560 Msa1235680:intron 20.0%
!!! CAAAAGTTTCTTTATTTTCA+TGG - chr8_2:13785787-13785806 None:intergenic 20.0%
!!! GAAAATAAAGAAACTTTTGA+AGG + chr8_2:13785788-13785807 Msa1235680:CDS 20.0%
!!! ACTTATATTTGTTTTATAGG+TGG + chr8_2:13785915-13785934 Msa1235680:intron 20.0%
!!! CTTATATTTGTTTTATAGGT+GGG + chr8_2:13785916-13785935 Msa1235680:intron 20.0%
!!! ATTGATTCCATATTTATTTC+TGG - chr8_2:13785952-13785971 None:intergenic 20.0%
!! AAATATGGAATCAATATTTC+AGG + chr8_2:13785957-13785976 Msa1235680:CDS 20.0%
!!! ACTTATATTTGTTTTATAGG+TGG + chr8_2:13785915-13785934 Msa1235680:intron 20.0%
!!! CTTATATTTGTTTTATAGGT+GGG + chr8_2:13785916-13785935 Msa1235680:intron 20.0%
!!! ATTGATTCCATATTTATTTC+TGG - chr8_2:13785952-13785971 None:intergenic 20.0%
!! AAATATGGAATCAATATTTC+AGG + chr8_2:13785957-13785976 Msa1235680:CDS 20.0%
!!! ATAAATTGTGAAAAAGTACT+TGG + chr8_2:13786816-13786835 Msa1235680:intron 20.0%
!! AAGAAAATAAGCATTATGAA+AGG - chr8_2:13786970-13786989 None:intergenic 20.0%
!!! ATTCTTTAAAGATAGAAAAC+AGG - chr8_2:13787116-13787135 None:intergenic 20.0%
!!! TGTTTTCTATCTTTAAAGAA+TGG + chr8_2:13787115-13787134 Msa1235680:CDS 20.0%
!! AAAACTAAAATTGAGGAATA+AGG - chr8_2:13787561-13787580 None:intergenic 20.0%
!! ATGTTCAAAAACTAAAATTG+AGG - chr8_2:13787568-13787587 None:intergenic 20.0%
! GCTGAACAAAAACAAAATAT+AGG - chr8_2:13784451-13784470 None:intergenic 25.0%
!!! ATAATATCATAGGCTACTTT+TGG - chr8_2:13784479-13784498 None:intergenic 25.0%
!!! GGTTTGTTTTGTTACAATAA+AGG + chr8_2:13785184-13785203 Msa1235680:intron 25.0%
!! TTTGGTATCATATTTGTTAG+AGG + chr8_2:13785369-13785388 Msa1235680:intron 25.0%
! AAAACACAAATCACAAACAA+TGG + chr8_2:13785417-13785436 Msa1235680:intron 25.0%
! ACACTGTCTTTGTAATTAAA+AGG - chr8_2:13785450-13785469 None:intergenic 25.0%
!!! TATCATCTGAAATTTTGTAG+CGG + chr8_2:13785654-13785673 Msa1235680:intron 25.0%
!!! AGTTTCTTTATTTTCATGGT+CGG - chr8_2:13785783-13785802 None:intergenic 25.0%
!! ATATTTTGCGAACAAAGTTT+TGG + chr8_2:13785853-13785872 Msa1235680:intron 25.0%
! TACTTTGCCAGAAATAAATA+TGG + chr8_2:13785942-13785961 Msa1235680:CDS 25.0%
!!! GATGTTGTCATTTCTAAAAT+AGG - chr8_2:13786061-13786080 None:intergenic 25.0%
! TCAGTTCAATGATTATTGAT+GGG + chr8_2:13786127-13786146 Msa1235680:CDS 25.0%
! CAGGAACAATATATATTTAC+CGG - chr8_2:13786240-13786259 None:intergenic 25.0%
! TATATATTGTTCCTGATGTA+AGG + chr8_2:13786245-13786264 Msa1235680:intron 25.0%
!! AAATTTTGCCAACAAAGTTT+TGG + chr8_2:13786310-13786329 Msa1235680:intron 25.0%
! TACTTTGCCAGAAATAAATA+TGG + chr8_2:13785942-13785961 Msa1235680:CDS 25.0%
!!! GATGTTGTCATTTCTAAAAT+AGG - chr8_2:13786061-13786080 None:intergenic 25.0%
! GTAAGTTCAATGATTATTGA+CGG + chr8_2:13786583-13786602 Msa1235680:CDS 25.0%
! TAAGTTCAATGATTATTGAC+GGG + chr8_2:13786584-13786603 Msa1235680:CDS 25.0%
! ATACACACTTTCATATCATT+TGG - chr8_2:13786722-13786741 None:intergenic 25.0%
! TGATATTCTTGATACTTCAA+TGG + chr8_2:13787009-13787028 Msa1235680:CDS 25.0%
! ATGAATCATTTGATCAAGAT+AGG - chr8_2:13787390-13787409 None:intergenic 25.0%
! ATTAAGAATGTAACTATCGT+TGG - chr8_2:13787592-13787611 None:intergenic 25.0%
! CGATAGTTACATTCTTAATA+CGG + chr8_2:13787593-13787612 Msa1235680:three_prime_UTR 25.0%
!! CATATTGTGAACTTTTGATA+AGG + chr8_2:13787616-13787635 Msa1235680:three_prime_UTR 25.0%
! GAGGTTGATCATAATATCAT+AGG - chr8_2:13784489-13784508 None:intergenic 30.0%
!!! GTAACTTGTTTTTGAGATAG+TGG - chr8_2:13784745-13784764 None:intergenic 30.0%
!!! TTCATCTTTTTCAGCTTGTT+CGG + chr8_2:13784905-13784924 Msa1235680:intron 30.0%
ATAAGTATGCAAAGAGTAAG+AGG + chr8_2:13784976-13784995 Msa1235680:CDS 30.0%
CAAAGAGTAAGAGGTTTAAA+AGG + chr8_2:13784985-13785004 Msa1235680:CDS 30.0%
! GGACAACTAATAATGGTTTT+TGG + chr8_2:13785006-13785025 Msa1235680:CDS 30.0%
AGGGGTAGCAATAATATTAT+TGG + chr8_2:13785062-13785081 Msa1235680:CDS 30.0%
GGGGTAGCAATAATATTATT+GGG + chr8_2:13785063-13785082 Msa1235680:CDS 30.0%
! AAGACTCTTGTTTACTATAG+TGG + chr8_2:13785092-13785111 Msa1235680:CDS 30.0%
GACAAAACATGAGTTTATTC+AGG + chr8_2:13785255-13785274 Msa1235680:intron 30.0%
!!! CTTTGAACCCTTTTTTCTTT+TGG + chr8_2:13785351-13785370 Msa1235680:intron 30.0%
AAAAGACTAAAAGAGTGACT+TGG - chr8_2:13785522-13785541 None:intergenic 30.0%
ATGCAGATATATGTGATGAA+GGG + chr8_2:13785735-13785754 Msa1235680:CDS 30.0%
GTCAGTTCAATGATTATTGA+TGG + chr8_2:13786126-13786145 Msa1235680:CDS 30.0%
CAGTTCAATGATTATTGATG+GGG + chr8_2:13786128-13786147 Msa1235680:CDS 30.0%
AATGATTATTGATGGGGATT+TGG + chr8_2:13786134-13786153 Msa1235680:CDS 30.0%
!! CTTTAAAGCCAAAACTTTGT+TGG - chr8_2:13785864-13785883 None:intergenic 30.0%
AAGTTCAATGATTATTGACG+GGG + chr8_2:13786585-13786604 Msa1235680:CDS 30.0%
TTGGATGAAATGAAATGTCT+AGG + chr8_2:13786835-13786854 Msa1235680:intron 30.0%
CATTCTAGTAGCATTTCAAA+AGG - chr8_2:13786946-13786965 None:intergenic 30.0%
! TCTTCTACAATTTTACAGTG+TGG + chr8_2:13786986-13787005 Msa1235680:intron 30.0%
AAATTGTTGAAATCAACGCA+TGG + chr8_2:13787073-13787092 Msa1235680:CDS 30.0%
TTCAACTGCAGATATATCTT+TGG + chr8_2:13787207-13787226 Msa1235680:CDS 30.0%
! GTTTTTGCGTTTTCTTATAG+TGG - chr8_2:13787269-13787288 None:intergenic 30.0%
TCATTATTAGTTCAGTTGCT+TGG - chr8_2:13787362-13787381 None:intergenic 30.0%
AATTAGAACTATGTCTCTTG+AGG - chr8_2:13787484-13787503 None:intergenic 30.0%
!! AGACATAGTTCTAATTCCTT+AGG + chr8_2:13787488-13787507 Msa1235680:three_prime_UTR 30.0%
AGAGAGATATGAAGAGAAAG+TGG - chr8_2:13784581-13784600 None:intergenic 35.0%
AGCTATAACATTGTCGACAA+TGG - chr8_2:13784780-13784799 None:intergenic 35.0%
ATGTATGCAAGTATGAACCT+TGG + chr8_2:13784807-13784826 Msa1235680:CDS 35.0%
TGTATGCAAGTATGAACCTT+GGG + chr8_2:13784808-13784827 Msa1235680:CDS 35.0%
TAAAATCAGATGACCCAGAA+TGG + chr8_2:13784931-13784950 Msa1235680:CDS 35.0%
GACACAAGAAAAACCATTCT+GGG - chr8_2:13784947-13784966 None:intergenic 35.0%
!! AATGGTTTTTGGAAAGCTAC+CGG + chr8_2:13785017-13785036 Msa1235680:CDS 35.0%
CTTAATCTTTCGATCCTTTC+CGG - chr8_2:13785039-13785058 None:intergenic 35.0%
AGGATCGAAAGATTAAGGTT+AGG + chr8_2:13785042-13785061 Msa1235680:CDS 35.0%
GGATCGAAAGATTAAGGTTA+GGG + chr8_2:13785043-13785062 Msa1235680:CDS 35.0%
GATCGAAAGATTAAGGTTAG+GGG + chr8_2:13785044-13785063 Msa1235680:CDS 35.0%
ACAAACCTTGTCATCTTCAA+AGG - chr8_2:13785171-13785190 None:intergenic 35.0%
TTCAGAACAGCCAATCATAT+AGG - chr8_2:13785293-13785312 None:intergenic 35.0%
!! ACTAAAAGAGTGACTTGGTA+AGG - chr8_2:13785517-13785536 None:intergenic 35.0%
!!! CGCATTAGTTTGTTTTGTCT+TGG + chr8_2:13785594-13785613 Msa1235680:intron 35.0%
AGCTGAGAAAAAAGCTGAAA+AGG + chr8_2:13785706-13785725 Msa1235680:CDS 35.0%
GATGCAGATATATGTGATGA+AGG + chr8_2:13785734-13785753 Msa1235680:CDS 35.0%
TGCAGATATATGTGATGAAG+GGG + chr8_2:13785736-13785755 Msa1235680:CDS 35.0%
TTGAAGGAATTCCTGATGTA+AGG + chr8_2:13785804-13785823 Msa1235680:intron 35.0%
TCAGCATGTTTCATGTAGAA+AGG - chr8_2:13785893-13785912 None:intergenic 35.0%
! TGCTCATTTTCAGAGATTGA+AGG - chr8_2:13786003-13786022 None:intergenic 35.0%
! TTCAATCTCTGAAAATGAGC+AGG + chr8_2:13786002-13786021 Msa1235680:CDS 35.0%
! TCCATTTGAAACCATTGAAG+AGG + chr8_2:13786092-13786111 Msa1235680:CDS 35.0%
TCCTCTTCAATGGTTTCAAA+TGG - chr8_2:13786096-13786115 None:intergenic 35.0%
GAACTTATCTTCCTCTTCAA+TGG - chr8_2:13786106-13786125 None:intergenic 35.0%
TCGTTGAAAATGGTCTACTA+TGG + chr8_2:13786180-13786199 Msa1235680:CDS 35.0%
TCAGCATGTTTCATGTAGAA+AGG - chr8_2:13785893-13785912 None:intergenic 35.0%
! CATTTTCAGAGATTGAAGGA+AGG - chr8_2:13785999-13786018 None:intergenic 35.0%
! TGCTCATTTTCAGAGATTGA+AGG - chr8_2:13786003-13786022 None:intergenic 35.0%
! TTCAATCTCTGAAAATGAGC+AGG + chr8_2:13786002-13786021 Msa1235680:CDS 35.0%
! CTAAAATAGGCATCGTGAAT+TGG - chr8_2:13786048-13786067 None:intergenic 35.0%
! TCCATTTGAAACCATTGAAG+AGG + chr8_2:13786092-13786111 Msa1235680:CDS 35.0%
TCCTCTTCAATGGTTTCAAA+TGG - chr8_2:13786096-13786115 None:intergenic 35.0%
GAACTTATCTTCCTCTTCAA+TGG - chr8_2:13786106-13786125 None:intergenic 35.0%
AATGATTATTGACGGGGATT+TGG + chr8_2:13786591-13786610 Msa1235680:CDS 35.0%
TCGTTGAAAATGGTCTACTA+TGG + chr8_2:13786180-13786199 Msa1235680:CDS 35.0%
TATTAGTGAACCATCCATTG+CGG + chr8_2:13786746-13786765 Msa1235680:intron 35.0%
TTTCTTGAACATCCTAGTTC+AGG + chr8_2:13787034-13787053 Msa1235680:CDS 35.0%
! AGTACCTTTCGAGATGATTT+TGG + chr8_2:13787160-13787179 Msa1235680:CDS 35.0%
! GTACCTTTCGAGATGATTTT+GGG + chr8_2:13787161-13787180 Msa1235680:CDS 35.0%
! TACCTTTCGAGATGATTTTG+GGG + chr8_2:13787162-13787181 Msa1235680:CDS 35.0%
!! TTGCGTTTTCTTATAGTGGA+AGG - chr8_2:13787265-13787284 None:intergenic 35.0%
! CCATTTTACAACTGTTCCTA+AGG - chr8_2:13787507-13787526 None:intergenic 35.0%
CCTTAGGAACAGTTGTAAAA+TGG + chr8_2:13787504-13787523 Msa1235680:three_prime_UTR 35.0%
! TAGTGTGTGTGAGAGTTTTG+AGG - chr8_2:13784508-13784527 None:intergenic 40.0%
ATCTGAATCCAACAGGAACA+TGG - chr8_2:13784694-13784713 None:intergenic 40.0%
CTTACAAGCTCTTCATCTGT+TGG - chr8_2:13784722-13784741 None:intergenic 40.0%
! TTTTTACCTGGTAACTCCCA+AGG - chr8_2:13784827-13784846 None:intergenic 40.0%
!!! ATCTTTTTCAGCTTGTTCGG+TGG + chr8_2:13784908-13784927 Msa1235680:intron 40.0%
GGACACAAGAAAAACCATTC+TGG - chr8_2:13784948-13784967 None:intergenic 40.0%
!! TTTTTGGAAAGCTACCGGAA+AGG + chr8_2:13785022-13785041 Msa1235680:CDS 40.0%
CGGAAAGGATCGAAAGATTA+AGG + chr8_2:13785037-13785056 Msa1235680:CDS 40.0%
! TACCACCTTTGAAGATGACA+AGG + chr8_2:13785163-13785182 Msa1235680:CDS 40.0%
AACCTTGTCATCTTCAAAGG+TGG - chr8_2:13785168-13785187 None:intergenic 40.0%
AAGGATGAACTCCTTACATC+AGG - chr8_2:13785818-13785837 None:intergenic 40.0%
GGAATCAATATTTCAGGCAC+AGG + chr8_2:13785963-13785982 Msa1235680:CDS 40.0%
CATCGTGAATTGACGAGTTT+GGG - chr8_2:13786038-13786057 None:intergenic 40.0%
! GTAGACCATTTTCAACGACT+CGG - chr8_2:13786178-13786197 None:intergenic 40.0%
TGTAAGGAGTTCCTGATGTA+AGG + chr8_2:13786261-13786280 Msa1235680:intron 40.0%
AAGGATGAACTCCTTACATC+AGG - chr8_2:13785818-13785837 None:intergenic 40.0%
GGAATCAATATTTCAGGCAC+AGG + chr8_2:13785963-13785982 Msa1235680:CDS 40.0%
CATCGTGAATTGGAGAGTTT+GGG - chr8_2:13786495-13786514 None:intergenic 40.0%
! GTAGACCATTTTCAACGACT+CGG - chr8_2:13786178-13786197 None:intergenic 40.0%
!! GACCACATTTTAGCAATGCT+TGG + chr8_2:13786781-13786800 Msa1235680:intron 40.0%
! CACCAAGCATTGCTAAAATG+TGG - chr8_2:13786786-13786805 None:intergenic 40.0%
! ACCTTTCGAGATGATTTTGG+GGG + chr8_2:13787163-13787182 Msa1235680:CDS 40.0%
!! AGATGATTTTGGGGGATTAG+AGG + chr8_2:13787171-13787190 Msa1235680:CDS 40.0%
ATCTGCAGTTGAATCACAAG+AGG - chr8_2:13787200-13787219 None:intergenic 40.0%
! AGCTCTTTTCGACATGAAGA+TGG - chr8_2:13787311-13787330 None:intergenic 40.0%
! TCGAAAAGAGCTGCTTTAAG+AGG + chr8_2:13787319-13787338 Msa1235680:CDS 40.0%
ACCACTAAGCTAACACTTCA+TGG - chr8_2:13787443-13787462 None:intergenic 40.0%
GTCAAGAGTCGGAGGAAATA+AGG - chr8_2:13784672-13784691 None:intergenic 45.0%
ACAGGAACATGGTCAAGAGT+CGG - chr8_2:13784683-13784702 None:intergenic 45.0%
ACTCTTGACCATGTTCCTGT+TGG + chr8_2:13784683-13784702 Msa1235680:CDS 45.0%
GGTCTGAATCTGAATCCAAC+AGG - chr8_2:13784701-13784720 None:intergenic 45.0%
TATGAACCTTGGGAGTTACC+AGG + chr8_2:13784818-13784837 Msa1235680:CDS 45.0%
TACTATAGTGGTCGTGTTCC+TGG + chr8_2:13785104-13785123 Msa1235680:CDS 45.0%
TCGGAACTCATGTGTCTACT+TGG - chr8_2:13785764-13785783 None:intergenic 45.0%
GTGAATTGACGAGTTTGGGA+TGG - chr8_2:13786034-13786053 None:intergenic 45.0%
GCATCGTGAATTGACGAGTT+TGG - chr8_2:13786039-13786058 None:intergenic 45.0%
TGCTGAAGTAGTCTCTATGC+CGG + chr8_2:13786218-13786237 Msa1235680:CDS 45.0%
CATCAGGAACTCCTTACATC+AGG - chr8_2:13786259-13786278 None:intergenic 45.0%
GTGAATTGGAGAGTTTGGGA+TGG - chr8_2:13786491-13786510 None:intergenic 45.0%
GCATCGTGAATTGGAGAGTT+TGG - chr8_2:13786496-13786515 None:intergenic 45.0%
TCAAACTCATGTCACCGCAA+TGG - chr8_2:13786763-13786782 None:intergenic 45.0%
! TCAACGCATGGTAATGTTCC+TGG + chr8_2:13787085-13787104 Msa1235680:CDS 45.0%
GATAGAAAACAGGTGCTTCC+AGG - chr8_2:13787106-13787125 None:intergenic 45.0%
TCCCCCAAAATCATCTCGAA+AGG - chr8_2:13787167-13787186 None:intergenic 45.0%
! CTTTTCGACATGAAGATGGC+TGG - chr8_2:13787307-13787326 None:intergenic 45.0%
!! GCTGCTTTAAGAGGATCTTG+AGG + chr8_2:13787328-13787347 Msa1235680:CDS 45.0%
! GCCATGAAGTGTTAGCTTAG+TGG + chr8_2:13787439-13787458 Msa1235680:three_prime_UTR 45.0%
! TTCCTGGTGTTAACAGCAGC+TGG + chr8_2:13785120-13785139 Msa1235680:CDS 50.0%
! TCCTGGTGTTAACAGCAGCT+GGG + chr8_2:13785121-13785140 Msa1235680:CDS 50.0%
!! CCATTTTCAACGACTCGGAC+TGG - chr8_2:13786173-13786192 None:intergenic 50.0%
CCAGTCCGAGTCGTTGAAAA+TGG + chr8_2:13786170-13786189 Msa1235680:CDS 50.0%
!! CCATTTTCAACGACTCGGAC+TGG - chr8_2:13786173-13786192 None:intergenic 50.0%
CCAGTCCGAGTCGTTGAAAA+TGG + chr8_2:13786170-13786189 Msa1235680:CDS 50.0%
TGCTGAAGTAGTCTCTACGC+CGG + chr8_2:13786675-13786694 Msa1235680:CDS 50.0%
ACTCATGTCACCGCAATGGA+TGG - chr8_2:13786759-13786778 None:intergenic 50.0%
! GCAGAGTATTCGCCTGAACT+AGG - chr8_2:13787049-13787068 None:intergenic 50.0%
!! TGGCTGGTCTTGGATGATAC+TGG - chr8_2:13787291-13787310 None:intergenic 50.0%
!! GACATGAAGATGGCTGGTCT+TGG - chr8_2:13787301-13787320 None:intergenic 50.0%
GGAACATGGTCAAGAGTCGG+AGG - chr8_2:13784680-13784699 None:intergenic 55.0%
ACCCAGCTGCTGTTAACACC+AGG - chr8_2:13785125-13785144 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 13784436 13787723 13784436 ID=Msa1235680;Name=Msa1235680
chr8_2 mRNA 13784436 13787723 13784436 ID=Msa1235680-mRNA-1;Parent=Msa1235680;Name=Msa1235680-mRNA-1;_AED=0.09;_eAED=0.09;_QI=226|1|1|1|1|1|6|375|515
chr8_2 exon 13784436 13784839 13784436 ID=Msa1235680-mRNA-1:exon:5266;Parent=Msa1235680-mRNA-1
chr8_2 exon 13784919 13785184 13784919 ID=Msa1235680-mRNA-1:exon:5267;Parent=Msa1235680-mRNA-1
chr8_2 exon 13785674 13785820 13785674 ID=Msa1235680-mRNA-1:exon:5268;Parent=Msa1235680-mRNA-1
chr8_2 exon 13785934 13786239 13785934 ID=Msa1235680-mRNA-1:exon:5269;Parent=Msa1235680-mRNA-1
chr8_2 exon 13786391 13786696 13786391 ID=Msa1235680-mRNA-1:exon:5270;Parent=Msa1235680-mRNA-1
chr8_2 exon 13787004 13787723 13787004 ID=Msa1235680-mRNA-1:exon:5271;Parent=Msa1235680-mRNA-1
chr8_2 five_prime_UTR 13784436 13784661 13784436 ID=Msa1235680-mRNA-1:five_prime_utr;Parent=Msa1235680-mRNA-1
chr8_2 CDS 13784662 13784839 13784662 ID=Msa1235680-mRNA-1:cds;Parent=Msa1235680-mRNA-1
chr8_2 CDS 13784919 13785184 13784919 ID=Msa1235680-mRNA-1:cds;Parent=Msa1235680-mRNA-1
chr8_2 CDS 13785674 13785820 13785674 ID=Msa1235680-mRNA-1:cds;Parent=Msa1235680-mRNA-1
chr8_2 CDS 13785934 13786239 13785934 ID=Msa1235680-mRNA-1:cds;Parent=Msa1235680-mRNA-1
chr8_2 CDS 13786391 13786696 13786391 ID=Msa1235680-mRNA-1:cds;Parent=Msa1235680-mRNA-1
chr8_2 CDS 13787004 13787348 13787004 ID=Msa1235680-mRNA-1:cds;Parent=Msa1235680-mRNA-1
chr8_2 three_prime_UTR 13787349 13787723 13787349 ID=Msa1235680-mRNA-1:three_prime_utr;Parent=Msa1235680-mRNA-1
Gene Sequence

>Msa1235680

ATGACAACCTTATTTCCTCCGACTCTTGACCATGTTCCTGTTGGATTCAGATTCAGACCAACAGATGAAGAGCTTGTAAGCCACTATCTCAAAAACAAGTTACTTGATAACGATTCCATTGTCGACAATGTTATAGCTGAAGTTGATGTATGCAAGTATGAACCTTGGGAGTTACCAGCTTGTTCGGTGGTAAAATCAGATGACCCAGAATGGTTTTTCTTGTGTCCTATTGATTATAAGTATGCAAAGAGTAAGAGGTTTAAAAGGACAACTAATAATGGTTTTTGGAAAGCTACCGGAAAGGATCGAAAGATTAAGGTTAGGGGTAGCAATAATATTATTGGGATTAAGAAGACTCTTGTTTACTATAGTGGTCGTGTTCCTGGTGTTAACAGCAGCTGGGTGATTCATGAATATCATGATACCACCTTTGAAGATGACAAGCGGACTTTTGTTTTATGTCGCTTGATGAAGAAAGCTGAGAAAAAAGCTGAAAAGGAAGCTGATGCAGATATATGTGATGAAGGGGAGCCAAGTAGACACATGAGTTCCGACCATGAAAATAAAGAAACTTTTGAAGGAATTCCTGATGTGGGTGATACTTTGCCAGAAATAAATATGGAATCAATATTTCAGGCACAGGCAGAAAAATACTTTCCTTCAATCTCTGAAAATGAGCAGGAAGTATCCATCCCAAACTCGTCAATTCACGATGCCTATTTTAGAAATGACAACATCATTGTTCAGAGTCCATTTGAAACCATTGAAGAGGAAGATAAGTTCGTCAGTTCAATGATTATTGATGGGGATTTGGACAACGCTCATGTCCAGTCCGAGTCGTTGAAAATGGTCTACTATGGAAGCAGTGACACAGATGCTGAAGTAGTCTCTATGCCGGTGGGTGATACTTTGCCAGAAATAAATATGGAATCAATATTTCAGGCACAGGCAGAAAAATACCTTCCTTCAATCTCTGAAAATGAGCAGGAAGTATCCATCCCAAACTCTCCAATTCACGATGCCTATTTTAGAAATGACAACATCATTGTTCTGAGTCCATTTGAAACCATTGAAGAGGAAGATAAGTTCGTAAGTTCAATGATTATTGACGGGGATTTGGACAACGCTCATGTCCAGTCCGAGTCGTTGAAAATGGTCTACTATGGAAGCAGTGACACAGATGCTGAAGTAGTCTCTACGCCGTGTGGTGATATTCTTGATACTTCAATGGCATTTCTTGAACATCCTAGTTCAGGCGAATACTCTGCATCAAAATTGTTGAAATCAACGCATGGTAATGTTCCTGGAAGCACCTGTTTTCTATCTTTAAAGAATGGTGAAATCGAAGACAACAACGAGAGTACCTTTCGAGATGATTTTGGGGGATTAGAGGCATCCTCTTGTGATTCAACTGCAGATATATCTTTGGAGACGATCAATTGTATTGAAATTTCTAGTTTACCTTCCACTATAAGAAAACGCAAAAACCAGTATCATCCAAGACCAGCCATCTTCATGTCGAAAAGAGCTGCTTTAAGAGGATCTTGA
Protein sequence

>Msa1235680

MTTLFPPTLDHVPVGFRFRPTDEELVSHYLKNKLLDNDSIVDNVIAEVDVCKYEPWELPACSVVKSDDPEWFFLCPIDYKYAKSKRFKRTTNNGFWKATGKDRKIKVRGSNNIIGIKKTLVYYSGRVPGVNSSWVIHEYHDTTFEDDKRTFVLCRLMKKAEKKAEKEADADICDEGEPSRHMSSDHENKETFEGIPDVGDTLPEINMESIFQAQAEKYFPSISENEQEVSIPNSSIHDAYFRNDNIIVQSPFETIEEEDKFVSSMIIDGDLDNAHVQSESLKMVYYGSSDTDAEVVSMPVGDTLPEINMESIFQAQAEKYLPSISENEQEVSIPNSPIHDAYFRNDNIIVLSPFETIEEEDKFVSSMIIDGDLDNAHVQSESLKMVYYGSSDTDAEVVSTPCGDILDTSMAFLEHPSSGEYSASKLLKSTHGNVPGSTCFLSLKNGEIEDNNESTFRDDFGGLEASSCDSTADISLETINCIEISSLPSTIRKRKNQYHPRPAIFMSKRAALRGS*