AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1238020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1238020 MtrunA17_Chr8g0349261 98.653 297 4 0 1 297 1 297 0.0 609
Msa1238020 MtrunA17_Chr7g0247131 68.872 257 71 6 45 296 9 261 2.97e-116 335
Msa1238020 MtrunA17_Chr1g0203411 48.387 310 116 10 1 296 1 280 2.98e-88 265
Msa1238020 MtrunA17_Chr7g0217741 67.251 171 53 3 1 171 1 168 1.82e-78 241
Msa1238020 MtrunA17_Chr6g0453471 61.307 199 61 6 1 195 1 187 2.86e-77 239
Msa1238020 MtrunA17_Chr4g0042671 65.341 176 47 4 1 169 1 169 5.79e-76 237
Msa1238020 MtrunA17_Chr4g0039971 76.923 130 28 2 1 130 2 129 3.43e-70 221
Msa1238020 MtrunA17_Chr2g0281071 72.308 130 35 1 1 130 1 129 1.29e-68 216
Msa1238020 MtrunA17_Chr3g0115821 73.077 130 33 2 1 130 1 128 8.20e-68 214
Msa1238020 MtrunA17_Chr4g0048511 71.538 130 36 1 1 130 1 129 4.42e-67 213
Msa1238020 MtrunA17_Chr5g0434571 73.134 134 34 2 1 134 37 168 4.24e-65 208
Msa1238020 MtrunA17_Chr2g0323411 67.832 143 43 3 1 143 1 140 1.94e-64 205
Msa1238020 MtrunA17_Chr4g0057031 73.282 131 33 2 1 131 1 129 2.13e-64 203
Msa1238020 MtrunA17_Chr5g0410961 68.462 130 39 2 1 130 1 128 7.58e-64 204
Msa1238020 MtrunA17_Chr5g0395281 70.769 130 36 2 1 130 1 128 9.47e-64 203
Msa1238020 MtrunA17_Chr3g0110351 70.896 134 37 2 1 134 1 132 1.86e-63 202
Msa1238020 MtrunA17_Chr7g0228891 70.992 131 36 2 1 131 1 129 1.88e-62 198
Msa1238020 MtrunA17_Chr4g0037141 51.323 189 85 3 1 189 1 182 9.24e-62 197
Msa1238020 MtrunA17_Chr1g0187761 72.881 118 30 2 1 118 1 116 2.78e-61 195
Msa1238020 MtrunA17_Chr3g0121241 68.504 127 38 2 5 131 35 159 5.60e-61 196
Msa1238020 MtrunA17_Chr7g0261281 72.881 118 30 2 1 118 1 116 2.33e-60 193
Msa1238020 MtrunA17_Chr1g0193371 68.182 132 40 2 1 132 1 130 2.50e-60 196
Msa1238020 MtrunA17_Chr3g0131121 59.603 151 55 3 1 147 1 149 3.38e-59 191
Msa1238020 MtrunA17_Chr8g0385321 64.662 133 45 2 1 133 1 131 3.42e-59 191
Msa1238020 MtrunA17_Chr1g0167691 70.588 119 33 2 1 119 1 117 2.04e-58 187
Msa1238020 MtrunA17_Chr1g0167661 69.748 119 34 2 1 119 1 117 2.86e-58 187
Msa1238020 MtrunA17_Chr5g0417821 57.792 154 59 2 11 164 5 152 5.43e-58 187
Msa1238020 MtrunA17_Chr4g0068061 66.116 121 39 2 1 121 1 119 2.09e-57 187
Msa1238020 MtrunA17_Chr7g0270891 66.667 132 42 2 1 132 1 130 2.38e-57 188
Msa1238020 MtrunA17_Chr1g0193801 66.667 132 42 2 1 132 1 130 2.44e-57 189
Msa1238020 MtrunA17_Chr7g0275911 69.492 118 34 2 1 118 1 116 5.41e-57 184
Msa1238020 MtrunA17_Chr7g0274581 63.559 118 41 2 1 118 1 116 7.71e-57 182
Msa1238020 MtrunA17_Chr3g0117091 52.062 194 76 4 1 181 1 190 4.09e-56 184
Msa1238020 MtrunA17_Chr2g0309911 63.077 130 46 2 6 135 5 132 7.59e-56 182
Msa1238020 MtrunA17_Chr4g0058631 62.963 135 48 2 1 135 1 133 1.41e-55 183
Msa1238020 MtrunA17_Chr7g0271241 66.667 132 42 2 1 132 1 130 2.50e-55 183
Msa1238020 MtrunA17_Chr1g0211161 64.122 131 46 1 1 131 1 130 2.61e-55 179
Msa1238020 MtrunA17_Chr6g0452271 59.848 132 51 2 1 132 1 130 3.14e-54 179
Msa1238020 MtrunA17_Chr5g0435101 62.205 127 46 2 3 129 2 126 3.54e-54 175
Msa1238020 MtrunA17_Chr8g0346561 66.949 118 37 2 1 118 1 116 4.54e-54 178
Msa1238020 MtrunA17_Chr2g0330041 50.909 165 70 3 1 156 1 163 1.03e-53 180
Msa1238020 MtrunA17_Chr4g0060721 66.102 118 38 2 1 118 2 117 1.22e-53 177
Msa1238020 MtrunA17_Chr7g0217221 46.188 223 87 9 1 210 1 203 3.27e-53 174
Msa1238020 MtrunA17_Chr3g0092401 47.826 207 98 6 1 204 2 201 1.18e-52 174
Msa1238020 MtrunA17_Chr7g0254411 63.780 127 42 3 1 125 1 125 1.32e-52 175
Msa1238020 MtrunA17_Chr3g0103281 55.152 165 62 6 1 165 1 153 1.36e-52 175
Msa1238020 MtrunA17_Chr4g0044421 60.317 126 49 1 3 128 2 126 2.95e-52 169
Msa1238020 MtrunA17_Chr1g0194951 62.308 130 47 2 1 130 1 128 3.64e-52 175
Msa1238020 MtrunA17_Chr4g0022931 63.559 118 42 1 1 118 1 117 6.26e-52 171
Msa1238020 MtrunA17_Chr4g0022901 63.866 119 42 1 1 119 1 118 1.18e-51 171
Msa1238020 MtrunA17_Chr8g0342541 60.800 125 47 2 1 125 1 123 8.03e-51 171
Msa1238020 MtrunA17_Chr8g0342521 60.800 125 47 2 1 125 1 123 3.81e-50 169
Msa1238020 MtrunA17_Chr4g0070611 64.407 118 40 2 1 118 1 116 6.20e-50 167
Msa1238020 MtrunA17_Chr4g0070641 64.407 118 40 2 1 118 1 116 8.69e-50 162
Msa1238020 MtrunA17_Chr4g0022911 60.504 119 46 1 1 119 1 118 1.89e-49 166
Msa1238020 MtrunA17_Chr4g0028311 57.364 129 54 1 1 129 1 128 7.00e-49 165
Msa1238020 MtrunA17_Chr2g0311221 66.071 112 36 2 2 113 4 113 8.64e-49 165
Msa1238020 MtrunA17_Chr6g0453211 65.487 113 37 2 1 113 1 111 8.92e-49 164
Msa1238020 MtrunA17_Chr7g0269831 67.797 118 36 2 1 118 1 116 3.53e-48 164
Msa1238020 MtrunA17_Chr8g0387421 61.864 118 43 2 1 118 1 116 4.18e-48 163
Msa1238020 MtrunA17_Chr1g0151941 57.983 119 49 1 1 119 1 118 5.75e-48 160
Msa1238020 MtrunA17_Chr5g0400821 59.664 119 47 1 1 119 1 118 2.20e-47 160
Msa1238020 MtrunA17_Chr7g0264641 58.678 121 49 1 1 121 1 120 2.20e-47 159
Msa1238020 MtrunA17_Chr2g0323351 63.025 119 42 2 1 119 1 117 2.60e-47 159
Msa1238020 MtrunA17_Chr3g0135311 59.664 119 47 1 1 119 1 118 2.66e-47 161
Msa1238020 MtrunA17_Chr8g0342481 60.504 119 46 1 1 119 1 118 7.11e-47 162
Msa1238020 MtrunA17_Chr2g0327351 58.156 141 53 3 1 138 1 138 7.91e-47 159
Msa1238020 MtrunA17_Chr5g0397231 64.286 112 38 2 1 112 1 110 8.22e-47 160
Msa1238020 MtrunA17_Chr1g0152011 57.983 119 49 1 1 119 1 118 3.54e-46 158
Msa1238020 MtrunA17_Chr8g0354661 66.667 105 34 1 13 117 37 140 9.84e-46 162
Msa1238020 MtrunA17_Chr6g0487491 55.906 127 47 2 1 119 1 126 1.05e-45 155
Msa1238020 MtrunA17_Chr4g0032401 60.714 112 43 1 13 124 17 127 2.86e-45 156
Msa1238020 MtrunA17_Chr3g0088461 61.017 118 45 1 1 118 10 126 1.18e-44 154
Msa1238020 MtrunA17_Chr4g0022891 60.000 115 44 2 1 115 1 113 2.12e-44 151
Msa1238020 MtrunA17_Chr2g0328771 62.264 106 39 1 13 118 20 124 3.01e-44 153
Msa1238020 MtrunA17_Chr4g0072751 60.714 112 43 1 1 112 1 111 3.78e-44 153
Msa1238020 MtrunA17_Chr4g0022881 56.667 120 50 2 1 120 1 118 7.68e-44 149
Msa1238020 MtrunA17_Chr6g0450101 57.983 119 48 2 1 118 1 118 2.17e-43 147
Msa1238020 MtrunA17_Chr7g0228231 63.208 106 38 1 13 118 14 118 2.45e-43 147
Msa1238020 MtrunA17_Chr1g0168661 60.577 104 40 1 14 117 22 124 7.81e-43 147
Msa1238020 MtrunA17_Chr1g0186061 54.839 124 51 2 14 137 21 139 8.55e-43 147
Msa1238020 MtrunA17_Chr4g0054391 57.658 111 46 1 1 111 1 110 2.07e-42 147
Msa1238020 MtrunA17_Chr3g0080861 61.905 105 39 1 13 117 37 140 4.81e-42 151
Msa1238020 MtrunA17_Chr1g0203441 52.713 129 59 2 1 129 1 127 1.52e-41 144
Msa1238020 MtrunA17_Chr4g0042611 70.000 90 25 2 1 90 1 88 2.83e-41 138
Msa1238020 MtrunA17_Chr1g0154031 61.905 105 39 1 13 117 76 179 3.05e-41 147
Msa1238020 MtrunA17_Chr3g0099131 60.000 105 41 1 13 117 41 144 5.76e-41 149
Msa1238020 MtrunA17_Chr1g0180391 60.377 106 41 1 13 118 19 123 6.21e-41 142
Msa1238020 MtrunA17_Chr1g0209661 56.250 112 48 1 13 124 27 137 1.19e-40 143
Msa1238020 MtrunA17_Chr2g0294811 55.738 122 48 3 1 118 1 120 3.62e-40 136
Msa1238020 MtrunA17_Chr2g0322521 60.360 111 43 1 7 117 23 132 1.01e-39 143
Msa1238020 MtrunA17_Chr1g0194301 47.015 134 70 1 8 141 28 160 4.51e-39 138
Msa1238020 MtrunA17_Chr6g0470971 53.175 126 57 2 10 134 11 135 2.68e-38 136
Msa1238020 MtrunA17_Chr1g0194291 56.364 110 47 1 8 117 16 124 3.26e-38 135
Msa1238020 MtrunA17_Chr4g0055981 54.237 118 53 1 10 127 52 168 3.51e-38 134
Msa1238020 MtrunA17_Chr7g0240821 56.075 107 46 1 18 124 6 111 2.81e-37 132
Msa1238020 MtrunA17_Chr2g0327821 56.190 105 45 1 13 117 6 109 5.28e-37 132
Msa1238020 MtrunA17_Chr8g0343831 55.660 106 46 1 13 118 8 112 5.47e-37 132
Msa1238020 MtrunA17_Chr7g0220341 53.509 114 50 2 8 119 20 132 1.57e-36 131
Msa1238020 MtrunA17_Chr5g0434931 53.704 108 49 1 12 119 34 140 2.95e-36 131
Msa1238020 MtrunA17_Chr4g0030881 54.054 111 43 2 14 117 8 117 1.24e-35 129
Msa1238020 MtrunA17_Chr5g0434831 54.630 108 48 1 12 119 6 112 1.42e-35 126
Msa1238020 MtrunA17_Chr5g0434911 51.852 108 51 1 12 119 20 126 4.56e-35 127
Msa1238020 MtrunA17_Chr2g0293911 56.881 109 46 1 8 116 19 126 3.06e-34 127
Msa1238020 MtrunA17_Chr5g0440781 48.673 113 55 3 14 125 13 123 5.55e-34 122
Msa1238020 MtrunA17_Chr7g0228991 51.786 112 53 1 8 119 24 134 6.06e-34 125
Msa1238020 MtrunA17_Chr5g0395221 67.470 83 26 1 8 90 7 88 1.01e-33 118
Msa1238020 MtrunA17_Chr4g0068921 55.963 109 47 1 8 116 19 126 1.67e-33 121
Msa1238020 MtrunA17_Chr1g0192411 47.200 125 59 2 11 129 10 133 2.10e-33 126
Msa1238020 MtrunA17_Chr8g0360111 53.271 107 49 1 8 114 20 125 4.04e-33 122
Msa1238020 MtrunA17_Chr8g0342511 60.674 89 33 2 1 89 1 87 4.28e-33 117
Msa1238020 MtrunA17_Chr5g0440761 48.673 113 55 3 14 125 13 123 5.14e-33 122
Msa1238020 MtrunA17_Chr5g0434841 52.778 108 50 1 12 119 19 125 5.25e-33 123
Msa1238020 MtrunA17_Chr5g0441141 48.673 113 55 3 14 125 13 123 5.92e-33 122
Msa1238020 MtrunA17_Chr8g0342531 56.250 96 41 1 3 98 2 96 1.40e-32 118
Msa1238020 MtrunA17_Chr2g0323321 58.511 94 36 2 1 94 1 91 2.29e-32 115
Msa1238020 MtrunA17_Chr5g0441131 48.673 113 55 3 14 125 10 120 1.68e-31 115
Msa1238020 MtrunA17_Chr8g0334881 54.286 105 46 2 13 116 10 113 4.74e-31 118
Msa1238020 MtrunA17_Chr8g0342461 56.044 91 39 1 1 91 1 90 5.56e-31 113
Msa1238020 MtrunA17_Chr8g0342471 56.044 91 39 1 1 91 1 90 9.55e-31 112
Msa1238020 MtrunA17_Chr3g0099141 54.762 84 37 1 13 96 40 122 2.37e-30 111
Msa1238020 MtrunA17_Chr4g0008551 51.887 106 47 3 15 119 38 140 8.23e-30 115
Msa1238020 MtrunA17_Chr4g0013361 52.381 105 48 2 13 116 10 113 1.98e-29 113
Msa1238020 MtrunA17_Chr3g0133601 46.957 115 57 3 9 122 31 142 2.75e-29 111
Msa1238020 MtrunA17_Chr3g0093811 56.818 88 38 0 45 132 13 100 3.76e-29 112
Msa1238020 MtrunA17_Chr6g0454921 48.276 116 56 3 10 124 10 122 3.83e-29 110
Msa1238020 MtrunA17_Chr5g0401731 43.382 136 69 4 10 140 10 142 5.58e-28 110
Msa1238020 MtrunA17_Chr7g0238631 46.377 138 61 4 13 149 111 236 3.82e-27 110
Msa1238020 MtrunA17_Chr5g0429661 47.321 112 57 1 1 112 108 217 4.48e-27 108
Msa1238020 MtrunA17_Chr5g0437321 50.495 101 46 3 15 114 19 116 5.91e-27 106
Msa1238020 MtrunA17_Chr4g0053431 50.485 103 49 2 15 117 5 105 4.81e-26 103
Msa1238020 MtrunA17_Chr3g0139671 42.446 139 72 5 13 146 83 218 2.14e-25 106
Msa1238020 MtrunA17_Chr6g0453751 52.128 94 37 2 12 97 19 112 3.63e-25 97.8
Msa1238020 MtrunA17_Chr6g0480581 44.800 125 61 4 15 134 4 125 4.20e-25 100
Msa1238020 MtrunA17_Chr7g0229101 60.563 71 28 0 45 115 3 73 6.74e-25 99.4
Msa1238020 MtrunA17_Chr7g0247141 79.592 49 9 1 1 49 1 48 7.44e-25 94.7
Msa1238020 MtrunA17_Chr4g0058991 49.515 103 50 1 10 112 204 304 9.11e-25 103
Msa1238020 MtrunA17_Chr7g0229131 56.000 75 33 0 45 119 3 77 1.81e-24 97.1
Msa1238020 MtrunA17_Chr1g0157731 47.664 107 52 3 13 118 89 192 2.10e-24 103
Msa1238020 MtrunA17_Chr4g0042621 58.696 92 25 4 86 169 9 95 1.08e-23 98.6
Msa1238020 MtrunA17_Chr3g0117511 45.045 111 53 4 10 117 178 283 1.76e-23 99.8
Msa1238020 MtrunA17_Chr7g0228531 33.514 185 94 6 11 190 216 376 2.59e-23 99.0
Msa1238020 MtrunA17_Chr5g0425591 48.235 85 42 2 14 97 10 93 4.19e-23 91.3
Msa1238020 MtrunA17_Chr5g0434901 59.091 66 27 0 50 115 9 74 1.78e-22 90.1
Msa1238020 MtrunA17_Chr5g0397841 47.000 100 49 3 13 111 108 204 1.67e-20 91.3
Msa1238020 MtrunA17_Chr6g0460661 43.434 99 52 3 15 112 16 111 1.73e-20 86.3
Msa1238020 MtrunA17_Chr1g0177901 50.000 78 38 1 35 112 13 89 2.99e-20 87.0
Msa1238020 MtrunA17_Chr3g0125801 47.115 104 51 3 15 117 16 116 3.20e-20 88.6
Msa1238020 MtrunA17_Chr7g0233061 44.000 100 48 2 15 112 180 273 7.59e-20 88.6
Msa1238020 MtrunA17_Chr5g0417621 44.762 105 54 3 15 118 134 235 8.11e-20 89.0
Msa1238020 MtrunA17_Chr7g0228481 30.769 182 103 7 11 190 216 376 2.16e-19 87.8
Msa1238020 MtrunA17_Chr4g0042501 44.231 104 54 3 15 117 105 205 4.19e-19 87.0
Msa1238020 MtrunA17_Chr7g0228401 48.864 88 41 3 26 112 290 374 8.70e-19 86.3
Msa1238020 MtrunA17_Chr7g0238651 39.062 128 74 3 18 142 10 136 1.88e-17 81.6
Msa1238020 MtrunA17_Chr5g0395231 66.667 51 17 0 80 130 5 55 2.01e-17 80.1
Msa1238020 MtrunA17_Chr6g0460671 38.462 104 60 3 15 117 99 199 5.16e-17 80.1
Msa1238020 MtrunA17_Chr5g0416341 41.748 103 52 4 18 117 29 126 4.20e-16 78.2
Msa1238020 MtrunA17_Chr8g0362231 40.777 103 53 4 18 117 25 122 2.00e-15 76.3
Msa1238020 MtrunA17_Chr7g0254261 41.346 104 57 3 15 117 89 189 5.08e-15 74.3
Msa1238020 MtrunA17_Chr1g0193901 51.667 60 27 2 13 71 11 69 4.15e-14 67.4
Msa1238020 MtrunA17_Chr1g0193891 51.667 60 27 2 13 71 11 69 4.15e-14 67.4
Msa1238020 MtrunA17_Chr1g0193871 51.667 60 27 2 13 71 11 69 4.15e-14 67.4
Msa1238020 MtrunA17_Chr1g0193881 51.667 60 27 2 13 71 11 69 4.15e-14 67.4
Msa1238020 MtrunA17_Chr5g0434871 52.273 44 21 0 76 119 2 45 2.48e-13 63.9
Msa1238020 MtrunA17_Chr3g0145551 68.421 38 12 0 94 131 2 39 1.78e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1238020 AT3G61250.1 62.252 302 85 9 1 297 1 278 1.04e-120 348
Msa1238020 AT3G01140.2 65.027 183 56 3 1 177 1 181 2.89e-80 247
Msa1238020 AT5G15310.4 65.318 173 58 2 1 173 1 171 1.31e-79 242
Msa1238020 AT5G15310.1 65.318 173 58 2 1 173 1 171 2.12e-79 244
Msa1238020 AT5G15310.2 65.318 173 58 2 1 173 1 171 2.55e-79 243
Msa1238020 AT3G01140.1 64.444 180 56 3 4 177 47 224 9.57e-77 239
Msa1238020 AT3G02940.2 73.846 130 32 2 1 130 1 128 1.29e-67 213
Msa1238020 AT5G10280.1 53.299 197 65 4 1 176 1 191 3.00e-67 213
Msa1238020 AT3G02940.1 73.846 130 32 2 1 130 1 128 3.18e-67 213
Msa1238020 AT3G02940.3 73.846 130 32 2 1 130 1 128 3.18e-67 213
Msa1238020 AT5G16770.4 73.077 130 33 2 1 130 1 128 9.96e-67 211
Msa1238020 AT5G16770.3 73.077 130 33 2 1 130 1 128 9.96e-67 211
Msa1238020 AT1G34670.1 55.080 187 71 3 1 176 1 185 2.44e-66 212
Msa1238020 AT4G05100.1 70.000 130 38 1 1 130 1 129 3.24e-66 210
Msa1238020 AT5G16770.1 73.077 130 33 2 1 130 1 128 3.27e-66 211
Msa1238020 AT5G16770.2 73.077 130 33 2 1 130 1 128 3.27e-66 211
Msa1238020 AT4G21440.1 70.769 130 36 2 1 130 1 128 6.62e-66 210
Msa1238020 AT4G22680.1 72.519 131 34 2 1 131 1 129 2.04e-65 206
Msa1238020 AT4G12350.1 70.992 131 36 2 1 131 1 129 1.79e-64 204
Msa1238020 AT5G65230.1 70.769 130 36 2 1 130 1 128 6.67e-64 204
Msa1238020 AT4G28110.1 68.462 130 39 2 1 130 1 128 1.03e-63 202
Msa1238020 AT3G13540.1 70.312 128 36 2 4 131 15 140 3.45e-63 200
Msa1238020 AT5G16600.1 71.970 132 35 2 1 132 1 130 3.51e-63 202
Msa1238020 AT4G17785.2 67.692 130 41 1 1 130 1 129 1.14e-62 202
Msa1238020 AT4G17785.1 67.692 130 41 1 1 130 1 129 1.68e-62 202
Msa1238020 AT1G22640.1 47.534 223 106 6 1 218 1 217 2.31e-62 198
Msa1238020 AT3G23250.1 74.576 118 28 2 1 118 1 116 1.99e-61 196
Msa1238020 AT1G06180.1 72.881 118 30 2 1 118 1 116 3.85e-61 194
Msa1238020 AT2G31180.1 72.034 118 31 2 1 118 1 116 9.91e-61 194
Msa1238020 AT2G16720.1 59.864 147 57 2 1 147 1 145 2.22e-60 193
Msa1238020 AT4G38620.1 66.418 134 43 2 1 134 1 132 3.62e-60 193
Msa1238020 AT4G09460.1 64.925 134 45 2 1 134 1 132 3.85e-60 192
Msa1238020 AT1G09540.1 65.693 137 45 2 1 137 1 135 2.17e-59 194
Msa1238020 AT1G18570.1 64.925 134 46 1 1 134 1 133 2.31e-59 193
Msa1238020 AT5G62320.1 57.229 166 53 3 2 150 3 167 5.64e-59 189
Msa1238020 AT1G35515.1 63.359 131 46 2 1 131 1 129 2.50e-58 186
Msa1238020 AT5G61420.2 64.179 134 46 2 1 134 1 132 2.61e-58 191
Msa1238020 AT1G57560.1 64.394 132 45 2 1 132 1 130 3.47e-58 189
Msa1238020 AT5G14340.1 66.412 131 42 2 1 131 13 141 5.29e-58 187
Msa1238020 AT1G57560.2 64.394 132 45 2 1 132 1 130 7.47e-58 187
Msa1238020 AT5G26660.1 64.662 133 45 2 1 133 1 131 2.38e-57 188
Msa1238020 AT4G34990.1 64.885 131 44 2 1 131 1 129 3.01e-57 186
Msa1238020 AT5G07690.1 63.636 132 46 2 1 132 1 130 6.08e-57 187
Msa1238020 AT5G07700.1 61.871 139 51 2 1 139 1 137 1.02e-56 186
Msa1238020 AT5G07700.2 61.871 139 51 2 1 139 1 137 1.02e-56 186
Msa1238020 AT5G60890.1 63.433 134 47 2 1 134 1 132 1.19e-56 184
Msa1238020 AT4G01680.3 66.667 129 41 2 1 129 1 127 2.60e-56 182
Msa1238020 AT5G54230.1 70.339 118 34 1 13 130 12 128 5.40e-56 184
Msa1238020 AT1G08810.1 70.339 118 33 2 1 118 1 116 1.12e-55 182
Msa1238020 AT4G01680.1 66.667 129 41 2 1 129 1 127 1.65e-55 183
Msa1238020 AT1G16490.1 69.231 117 34 2 2 118 4 118 2.84e-55 180
Msa1238020 AT1G79180.1 70.085 117 33 2 2 118 4 118 1.12e-54 179
Msa1238020 AT1G56160.1 69.231 117 34 2 2 118 4 118 1.50e-54 179
Msa1238020 AT5G49330.1 56.757 148 61 3 1 147 1 146 2.66e-54 180
Msa1238020 AT1G74650.1 67.769 121 37 2 1 121 1 119 3.12e-54 179
Msa1238020 AT1G74430.1 64.179 134 46 2 1 134 1 132 8.62e-54 176
Msa1238020 AT3G47600.1 67.769 121 37 2 1 121 1 119 1.01e-53 178
Msa1238020 AT1G74080.1 61.832 131 48 2 1 131 1 129 1.13e-53 178
Msa1238020 AT2G47460.1 68.644 118 35 2 1 118 1 116 1.48e-53 179
Msa1238020 AT5G56110.1 59.848 132 51 2 1 132 1 130 4.76e-53 176
Msa1238020 AT5G62470.2 67.797 118 36 2 1 118 1 116 9.34e-53 176
Msa1238020 AT3G12820.1 69.231 117 34 2 3 119 5 119 1.22e-52 172
Msa1238020 AT3G62610.1 67.797 118 36 2 1 118 1 116 1.30e-52 176
Msa1238020 AT3G28910.1 67.797 118 36 2 1 118 1 116 3.15e-52 174
Msa1238020 AT4G01680.2 60.993 141 41 3 1 129 1 139 4.97e-52 174
Msa1238020 AT1G18710.1 63.359 131 46 2 1 131 1 129 8.64e-52 171
Msa1238020 AT5G62470.1 67.797 118 35 3 1 118 1 115 2.44e-51 172
Msa1238020 AT3G13890.2 63.866 119 41 2 1 119 1 117 1.14e-50 171
Msa1238020 AT3G12720.1 59.375 128 50 2 6 133 16 141 2.53e-50 169
Msa1238020 AT4G37780.1 61.345 119 45 1 1 119 1 118 9.13e-50 167
Msa1238020 AT3G28470.1 52.353 170 67 4 1 158 1 168 4.95e-49 166
Msa1238020 AT1G63910.1 61.864 118 43 2 1 118 1 116 7.14e-48 164
Msa1238020 AT1G79180.2 54.667 150 33 3 2 118 4 151 8.87e-48 162
Msa1238020 AT3G13890.1 59.375 128 41 3 1 119 1 126 1.46e-47 163
Msa1238020 AT2G36890.1 56.716 134 56 2 1 133 1 133 1.49e-47 161
Msa1238020 AT3G49690.1 60.504 119 46 1 1 119 1 118 2.12e-47 161
Msa1238020 AT2G36890.2 56.716 134 56 2 1 133 42 174 2.56e-47 162
Msa1238020 AT5G57620.1 59.664 119 47 1 1 119 1 118 7.77e-47 160
Msa1238020 AT5G23000.1 58.824 119 48 1 1 119 1 118 1.70e-46 159
Msa1238020 AT5G65790.1 58.824 119 48 1 1 119 1 118 2.55e-46 160
Msa1238020 AT2G32460.1 65.094 106 36 1 12 117 17 121 9.22e-46 161
Msa1238020 AT2G32460.2 65.094 106 36 1 12 117 5 109 9.46e-46 161
Msa1238020 AT3G08500.1 63.063 111 40 1 8 118 25 134 9.88e-45 155
Msa1238020 AT5G55020.1 61.207 116 43 2 8 123 21 134 2.17e-44 158
Msa1238020 AT5G40350.1 60.909 110 42 1 13 122 17 125 7.53e-44 149
Msa1238020 AT5G14750.1 41.398 186 88 4 14 197 17 183 1.79e-43 147
Msa1238020 AT5G12870.1 62.385 109 40 1 13 121 18 125 1.93e-43 150
Msa1238020 AT3G27810.1 61.321 106 40 1 13 118 20 124 3.19e-43 148
Msa1238020 AT3G24310.1 61.321 106 40 1 12 117 17 121 7.05e-43 148
Msa1238020 AT4G26930.1 63.462 104 37 1 13 116 19 121 1.06e-42 151
Msa1238020 AT3G01530.1 61.321 106 40 1 13 118 25 129 1.31e-42 145
Msa1238020 AT4G13480.1 62.500 104 38 1 14 117 7 109 1.51e-42 147
Msa1238020 AT5G06100.1 58.491 106 43 1 12 117 31 135 2.98e-42 151
Msa1238020 AT3G11440.2 59.048 105 42 1 13 117 41 144 8.42e-42 150
Msa1238020 AT1G25340.1 49.296 142 67 3 1 138 4 144 1.01e-41 145
Msa1238020 AT5G06100.5 58.491 106 43 1 12 117 31 135 1.16e-41 150
Msa1238020 AT5G06100.2 58.491 106 43 1 12 117 31 135 1.16e-41 150
Msa1238020 AT5G06100.3 58.491 106 43 1 12 117 31 135 1.16e-41 150
Msa1238020 AT5G06100.4 58.491 106 43 1 12 117 31 135 1.16e-41 150
Msa1238020 AT3G11440.3 59.048 105 42 1 13 117 41 144 3.44e-41 150
Msa1238020 AT3G11440.4 59.048 105 42 1 13 117 41 144 3.44e-41 150
Msa1238020 AT3G11440.1 59.048 105 42 1 13 117 41 144 3.44e-41 150
Msa1238020 AT5G40330.1 58.095 105 43 1 14 118 13 116 3.61e-41 142
Msa1238020 AT5G35550.1 56.098 123 49 2 13 135 14 131 1.09e-40 142
Msa1238020 AT3G27920.1 56.604 106 45 1 14 119 15 119 1.70e-40 141
Msa1238020 AT3G30210.1 58.095 105 43 1 12 116 26 129 2.67e-40 142
Msa1238020 AT2G26960.1 58.772 114 45 2 10 123 17 128 3.98e-40 145
Msa1238020 AT3G46130.1 59.434 106 42 1 12 117 8 112 1.31e-39 139
Msa1238020 AT1G68320.1 56.250 112 48 1 13 124 19 129 1.54e-39 140
Msa1238020 AT5G59780.3 59.615 104 41 1 14 117 9 111 3.26e-39 137
Msa1238020 AT5G26660.2 68.966 87 27 0 47 133 14 100 4.90e-39 139
Msa1238020 AT5G52600.1 47.059 136 62 2 8 134 7 141 1.51e-38 135
Msa1238020 AT3G53200.1 58.095 105 43 1 13 117 9 112 7.41e-38 134
Msa1238020 AT2G47190.1 51.754 114 54 1 4 117 11 123 1.12e-37 135
Msa1238020 AT1G25340.2 47.183 142 65 4 1 138 4 139 2.07e-37 134
Msa1238020 AT1G25340.3 47.183 142 65 4 1 138 4 139 3.16e-37 134
Msa1238020 AT1G48000.1 43.333 150 84 1 13 162 32 180 3.90e-36 130
Msa1238020 AT1G66370.1 54.701 117 47 2 1 117 1 111 7.22e-36 129
Msa1238020 AT3G06490.1 54.098 122 55 1 8 129 14 134 1.21e-35 130
Msa1238020 AT5G52260.1 57.273 110 46 1 10 119 9 117 1.65e-35 129
Msa1238020 AT3G48920.1 50.000 126 56 3 14 139 19 137 3.49e-35 128
Msa1238020 AT4G25560.1 55.660 106 46 1 14 119 11 115 6.18e-35 128
Msa1238020 AT5G49620.1 55.455 110 48 1 7 116 20 128 1.14e-32 122
Msa1238020 AT1G66380.1 58.491 106 43 1 12 117 7 111 2.12e-32 117
Msa1238020 AT3G47600.2 75.000 72 18 0 47 118 39 110 2.38e-32 122
Msa1238020 AT5G14750.3 39.264 163 74 4 42 197 5 149 3.43e-32 117
Msa1238020 AT3G12820.2 71.831 71 20 0 49 119 1 71 4.10e-32 118
Msa1238020 AT1G22640.3 41.718 163 86 4 61 218 2 160 5.61e-32 118
Msa1238020 AT2G26950.1 48.246 114 57 2 10 123 13 124 3.62e-31 120
Msa1238020 AT1G56650.1 57.547 106 44 1 12 117 7 111 4.55e-31 117
Msa1238020 AT3G60460.1 51.852 108 50 2 10 116 8 114 1.08e-30 117
Msa1238020 AT5G35550.2 59.574 94 34 1 42 135 45 134 1.12e-30 116
Msa1238020 AT1G66390.1 57.547 106 44 1 12 117 7 111 3.84e-30 114
Msa1238020 AT3G46130.3 66.667 72 24 0 46 117 9 80 8.01e-30 113
Msa1238020 AT5G40350.2 63.158 76 28 0 47 122 5 80 8.41e-30 111
Msa1238020 AT3G27810.2 63.889 72 26 0 47 118 4 75 1.01e-29 111
Msa1238020 AT3G53200.2 64.789 71 25 0 47 117 9 79 1.50e-29 112
Msa1238020 AT5G59780.2 67.606 71 23 0 47 117 20 90 1.52e-29 112
Msa1238020 AT3G46130.4 67.606 71 23 0 47 117 20 90 1.56e-29 112
Msa1238020 AT5G49620.2 49.194 124 48 2 7 116 20 142 5.17e-29 113
Msa1238020 AT1G18960.1 47.107 121 54 3 15 132 10 123 6.10e-28 110
Msa1238020 AT3G09230.1 51.376 109 43 3 15 119 55 157 1.02e-27 111
Msa1238020 AT5G15310.3 57.143 84 36 0 90 173 9 92 1.84e-26 104
Msa1238020 AT3G55730.1 49.533 107 44 3 15 117 56 156 2.52e-26 107
Msa1238020 AT3G23250.2 75.862 58 14 0 61 118 2 59 3.69e-26 103
Msa1238020 AT1G71030.2 50.588 85 42 0 53 137 5 89 5.54e-26 101
Msa1238020 AT2G39880.1 48.598 107 45 3 15 117 50 150 7.00e-26 105
Msa1238020 AT1G71030.1 50.588 85 42 0 53 137 19 103 7.86e-26 101
Msa1238020 AT4G18770.1 45.946 111 54 2 10 118 212 318 1.15e-25 105
Msa1238020 AT5G02320.1 51.402 107 48 3 13 118 125 228 1.51e-25 106
Msa1238020 AT5G02320.2 51.402 107 48 3 13 118 125 228 1.51e-25 106
Msa1238020 AT5G11510.3 50.467 107 49 3 13 118 79 182 1.58e-25 107
Msa1238020 AT5G11510.1 50.467 107 49 3 13 118 79 182 1.58e-25 107
Msa1238020 AT5G11510.4 50.467 107 49 3 13 118 79 182 1.58e-25 107
Msa1238020 AT5G02320.3 51.402 107 48 3 13 118 65 168 1.61e-25 105
Msa1238020 AT3G50060.1 47.706 109 51 4 15 122 6 109 1.64e-25 103
Msa1238020 AT5G11510.2 50.467 107 49 3 13 118 79 182 1.70e-25 106
Msa1238020 AT5G11510.5 50.467 107 49 3 13 118 79 182 1.78e-25 106
Msa1238020 AT5G67300.1 43.182 132 67 5 15 145 6 130 3.74e-25 102
Msa1238020 AT5G40360.1 46.226 106 54 3 13 118 156 258 8.06e-25 102
Msa1238020 AT3G09370.1 50.943 106 48 3 13 117 128 230 2.35e-24 102
Msa1238020 AT3G09370.2 50.943 106 48 3 13 117 133 235 2.36e-24 102
Msa1238020 AT3G27785.1 50.485 103 47 3 10 111 184 283 2.58e-24 102
Msa1238020 AT3G09370.3 50.943 106 48 3 13 117 141 243 3.29e-24 102
Msa1238020 AT2G23290.1 49.038 104 49 3 15 117 13 113 4.16e-24 99.8
Msa1238020 AT5G58850.1 47.000 100 51 1 13 112 103 200 7.40e-24 100
Msa1238020 AT4G37260.1 47.115 104 51 3 15 117 13 113 1.13e-23 99.0
Msa1238020 AT1G17950.1 47.222 108 53 3 11 117 1 105 1.18e-23 97.4
Msa1238020 AT4G32730.1 45.794 107 54 3 13 118 85 188 4.05e-23 99.8
Msa1238020 AT4G32730.5 45.794 107 54 3 13 118 85 188 4.47e-23 99.8
Msa1238020 AT4G32730.4 45.794 107 54 3 13 118 85 188 4.47e-23 99.8
Msa1238020 AT4G32730.3 45.794 107 54 3 13 118 85 188 4.47e-23 99.8
Msa1238020 AT4G32730.2 45.794 107 54 3 13 118 85 188 4.47e-23 99.8
Msa1238020 AT5G14750.4 36.691 139 68 3 61 197 2 122 2.12e-22 91.3
Msa1238020 AT5G14750.2 36.691 139 68 3 61 197 2 122 2.12e-22 91.3
Msa1238020 AT5G11050.1 46.465 99 49 3 15 112 105 200 2.16e-22 96.7
Msa1238020 AT1G66380.3 59.740 77 31 0 41 117 2 78 2.74e-22 89.7
Msa1238020 AT4G00540.2 47.706 109 52 3 13 118 101 207 7.17e-22 95.1
Msa1238020 AT1G73410.1 48.077 104 50 3 15 117 6 106 1.34e-21 91.7
Msa1238020 AT4G00540.1 47.706 109 52 3 13 118 99 205 1.52e-21 94.4
Msa1238020 AT1G73410.2 48.077 104 50 3 15 117 6 106 3.54e-21 89.7
Msa1238020 AT4G33450.1 43.243 111 59 3 8 117 12 119 5.23e-21 90.1
Msa1238020 AT1G69560.1 42.202 109 61 1 10 118 102 208 2.38e-20 89.7
Msa1238020 AT1G69560.2 42.202 109 61 1 10 118 118 224 2.97e-20 89.7
Msa1238020 AT2G25230.1 42.727 110 58 4 10 118 21 126 3.26e-20 87.8
Msa1238020 AT1G26780.1 43.810 105 57 1 13 117 96 198 2.80e-19 85.9
Msa1238020 AT1G66380.2 54.118 85 38 1 12 96 7 90 3.16e-19 81.6
Msa1238020 AT1G26780.2 43.810 105 57 1 13 117 96 198 4.54e-19 86.7
Msa1238020 AT5G61420.1 71.154 52 15 0 83 134 2 53 1.41e-18 84.3
Msa1238020 AT3G29020.1 38.095 105 61 3 15 118 65 166 1.41e-16 77.8
Msa1238020 AT5G17800.1 41.748 103 58 2 15 117 93 193 1.61e-16 79.0
Msa1238020 AT3G29020.2 38.095 105 61 3 15 118 67 168 2.88e-16 78.2
Msa1238020 AT2G37630.1 36.220 127 78 2 18 142 7 132 4.98e-16 77.8
Msa1238020 AT5G59780.1 65.217 46 16 0 72 117 1 46 7.18e-16 74.3
Msa1238020 AT3G46130.2 65.217 46 16 0 72 117 1 46 9.78e-16 74.3
Msa1238020 AT1G22640.2 36.567 134 76 4 90 218 16 145 1.04e-15 74.3
Msa1238020 AT5G40430.1 36.364 110 64 4 10 118 49 153 1.61e-15 75.1
Msa1238020 AT2G02820.3 39.000 100 59 1 18 117 33 130 4.06e-15 75.1
Msa1238020 AT4G28110.2 70.732 41 12 0 90 130 4 44 5.34e-15 72.4
Msa1238020 AT1G74650.3 69.767 43 13 0 79 121 1 43 9.26e-15 72.8
Msa1238020 AT2G02820.1 39.000 100 59 1 18 117 33 130 1.06e-14 74.3
Msa1238020 AT1G14350.2 39.000 100 59 1 18 117 28 125 1.32e-14 73.9
Msa1238020 AT1G14350.1 39.000 100 59 1 18 117 28 125 1.32e-14 73.9
Msa1238020 AT2G02820.2 39.000 100 59 1 18 117 33 130 1.59e-14 73.9
Msa1238020 AT3G28910.2 70.000 40 12 0 79 118 1 40 3.01e-13 68.6
Msa1238020 AT1G74430.2 57.895 57 23 1 79 134 7 63 5.12e-13 67.0
Msa1238020 AT4G25560.2 55.319 47 21 0 73 119 3 49 2.52e-12 65.5
Msa1238020 AT1G14350.3 48.333 60 31 0 58 117 23 82 8.96e-12 65.5
Msa1238020 AT1G14350.4 48.333 60 31 0 58 117 23 82 8.96e-12 65.5
Msa1238020 AT5G39700.1 36.538 104 63 3 16 119 57 157 2.11e-11 62.4
Msa1238020 AT5G14340.2 59.524 42 17 0 90 131 10 51 6.34e-11 60.8
Msa1238020 AT1G16490.2 67.442 43 12 1 78 118 7 49 9.58e-11 60.8

Find 54 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACGAATTTGATTTGGAAAT+TGG 0.082125 8_2:-17749747 None:intergenic
ACCTTGTTGTGATAACAAAA+TGG 0.200976 8_2:+17747613 Msa1238020:CDS
CAATAACAACATTCCTTCTT+TGG 0.206897 8_2:+17749854 Msa1238020:CDS
CTGACTATTTCCTTAAGATA+TGG 0.244127 8_2:+17749895 Msa1238020:CDS
TTCGTTGCGGTAAGAGTTGC+CGG 0.304296 8_2:+17748640 Msa1238020:CDS
CACTGCACTGCAACTCTTGT+TGG 0.308906 8_2:+17750169 Msa1238020:CDS
CCTTGTTGTGATAACAAAAT+GGG 0.328230 8_2:+17747614 Msa1238020:CDS
GGCGATAGACGAATTTGATT+TGG 0.329986 8_2:-17749754 None:intergenic
ATCTCATTGTCAGTTCTTCC+TGG 0.339461 8_2:-17749630 None:intergenic
CTTCAGAGTTCCATATCTTA+AGG 0.345177 8_2:-17749905 None:intergenic
ACAATGAGATCAAGAATCTA+TGG 0.367759 8_2:+17749643 Msa1238020:CDS
ACGAATTTGATTTGGAAATT+GGG 0.374944 8_2:-17749746 None:intergenic
AAGGGACCGCGTTTAATATC+AGG 0.376248 8_2:-17748687 None:intergenic
CGCGTTTAATATCAGGTCTT+AGG 0.377987 8_2:-17748680 None:intergenic
CACACGCCACATGGCTCAAT+GGG 0.411490 8_2:+17749776 Msa1238020:CDS
CGTTCTCTTCCTAAGTTAGC+AGG 0.426052 8_2:+17747719 Msa1238020:CDS
AAGCTCATGTCATTGTTAGA+AGG 0.433035 8_2:-17750197 None:intergenic
CCACACGCCACATGGCTCAA+TGG 0.443811 8_2:+17749775 Msa1238020:CDS
GTAAGAGTTGCCGGCTAAGA+TGG 0.456858 8_2:+17748649 Msa1238020:CDS
TTCATGCCATCCTTGGAAAC+AGG 0.458279 8_2:+17748742 Msa1238020:CDS
ATACAGCTTCATGCCATCCT+TGG 0.465045 8_2:+17748735 Msa1238020:CDS
AACAAAATGGGGTTGAAGAA+AGG 0.484655 8_2:+17747626 Msa1238020:CDS
AAAATGGTGGTCATGGAAGC+TGG 0.495565 8_2:+17747696 Msa1238020:CDS
AAGATATGGAACTCTGAAGT+TGG 0.497165 8_2:+17749909 Msa1238020:CDS
AACTCTTACCGCAACGAAGA+AGG 0.505550 8_2:-17748635 None:intergenic
GGTAGTTTGTCCATCTTAGC+CGG 0.507787 8_2:-17748659 None:intergenic
GCTATTGGTTCATGAGTTTG+TGG 0.511715 8_2:-17749708 None:intergenic
AGACATTGAACTCTGGCACT+TGG 0.515510 8_2:-17749985 None:intergenic
AAAGTACCTGTTTCCAAGGA+TGG 0.520875 8_2:-17748748 None:intergenic
AAAGAAACGTCTCATATGCA+TGG 0.523969 8_2:+17749677 Msa1238020:CDS
TCAATTGCCTCTCAGCTACC+AGG 0.524112 8_2:+17749612 Msa1238020:CDS
CACTTTCCCATTGAGCCATG+TGG 0.532790 8_2:-17749782 None:intergenic
TCATCTTCTTCACTAGTCCA+TGG 0.537332 8_2:-17747650 None:intergenic
CAAGAAAGTACCTGTTTCCA+AGG 0.540593 8_2:-17748752 None:intergenic
TTCGTCGTCTGATTTGCGAC+CGG 0.551788 8_2:-17749946 None:intergenic
AACTACAAGTCATTTGATGT+AGG 0.555746 8_2:+17750101 Msa1238020:CDS
CTTCTTGAGACATTGAACTC+TGG 0.559731 8_2:-17749992 None:intergenic
TGTAATAACAACAACAAATG+TGG 0.560142 8_2:+17750023 Msa1238020:CDS
TACTACAACAAGCAATGTGA+TGG 0.566980 8_2:+17750061 Msa1238020:CDS
CAGAGTTCAATGTCTCAAGA+AGG 0.569037 8_2:+17749993 Msa1238020:CDS
AAGAAACGTCTCATATGCAT+GGG 0.571800 8_2:+17749678 Msa1238020:CDS
CTTTCAGGCCTTCTTCGTTG+CGG 0.574007 8_2:+17748627 Msa1238020:intron
TGGGGTTGAAGAAAGGTCCA+TGG 0.581977 8_2:+17747633 Msa1238020:CDS
AAGTAATGTGATGAGGCTAT+TGG 0.582396 8_2:-17749723 None:intergenic
CAAGACTTGAAGCAGAAGCA+AGG 0.585545 8_2:+17749805 Msa1238020:CDS
AGAGTTCAATGTCTCAAGAA+GGG 0.618934 8_2:+17749994 Msa1238020:CDS
GTCTATCGCCACACGCCACA+TGG 0.619157 8_2:+17749767 Msa1238020:CDS
TACAACAAGCAATGTGATGG+AGG 0.620346 8_2:+17750064 Msa1238020:CDS
CCATTGAGCCATGTGGCGTG+TGG 0.621705 8_2:-17749775 None:intergenic
ACGCGGTCCCTTTACACCTG+AGG 0.638908 8_2:+17748698 Msa1238020:CDS
CTTGTTGTGATAACAAAATG+GGG 0.670831 8_2:+17747615 Msa1238020:CDS
AGTTCTTCCTGGTAGCTGAG+AGG 0.678055 8_2:-17749619 None:intergenic
AATTGGGAAGTAATGTGATG+AGG 0.686160 8_2:-17749730 None:intergenic
CTAAGACCTGATATTAAACG+CGG 0.689576 8_2:+17748681 Msa1238020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTCTTCATAAATATATA+AGG - chr8_2:17747783-17747802 None:intergenic 10.0%
!!! AAATATGTTTTTTATGAAAT+AGG + chr8_2:17748111-17748130 Msa1238020:intron 10.0%
!!! AACATTTTTAAATAAAGTTT+TGG + chr8_2:17749165-17749184 Msa1238020:intron 10.0%
!! TAGTATAAATATTTCATAAT+AGG + chr8_2:17749213-17749232 Msa1238020:intron 10.0%
!! AGTATAAATATTTCATAATA+GGG + chr8_2:17749214-17749233 Msa1238020:intron 10.0%
!!! GTTAATTTTATCAAGAAAAA+TGG + chr8_2:17747680-17747699 Msa1238020:CDS 15.0%
!!! TGTATTTAAGTTATTTTCAT+AGG - chr8_2:17747979-17747998 None:intergenic 15.0%
!! AAATATTTATACTAACATCA+TGG - chr8_2:17749207-17749226 None:intergenic 15.0%
!! TCATTAATAATTTAAGAAAG+TGG - chr8_2:17749422-17749441 None:intergenic 15.0%
!!! AATTTTATCAAGAAAAATGG+TGG + chr8_2:17747683-17747702 Msa1238020:CDS 20.0%
!! TCTTCATAAATATATAAGGA+GGG - chr8_2:17747779-17747798 None:intergenic 20.0%
!! TTCTTCATAAATATATAAGG+AGG - chr8_2:17747780-17747799 None:intergenic 20.0%
!! AAGAAATATAAGTCTATGTT+TGG + chr8_2:17747795-17747814 Msa1238020:intron 20.0%
!! TGAGTAAAATTTATGAAAAC+AGG + chr8_2:17747857-17747876 Msa1238020:intron 20.0%
!!! TTTTTAACCTAACTTTTCAT+TGG + chr8_2:17748063-17748082 Msa1238020:intron 20.0%
!!! AAAAAGTACAAACCAATAAA+GGG - chr8_2:17748180-17748199 None:intergenic 20.0%
!!! TAAAAAGTACAAACCAATAA+AGG - chr8_2:17748181-17748200 None:intergenic 20.0%
!! TTACCTAACAAGTTATTATT+AGG + chr8_2:17748198-17748217 Msa1238020:intron 20.0%
!!! TATCCTAATAATAACTTGTT+AGG - chr8_2:17748204-17748223 None:intergenic 20.0%
!! GGATAATAATATTGTCTTAA+AGG + chr8_2:17748219-17748238 Msa1238020:intron 20.0%
!! TCTTTGTATTCATATATTCA+TGG + chr8_2:17748275-17748294 Msa1238020:intron 20.0%
!!! TTCATTTTCACATATAAGTT+TGG - chr8_2:17748949-17748968 None:intergenic 20.0%
!! TCTATCATTCAATATCAATA+TGG - chr8_2:17749121-17749140 None:intergenic 20.0%
!! AAATTCTTAAAATATAGCCA+TGG - chr8_2:17749560-17749579 None:intergenic 20.0%
! AGTATGATGTTTATCTAAAC+AGG + chr8_2:17748026-17748045 Msa1238020:intron 25.0%
! ATTTATGCCAATGAAAAGTT+AGG - chr8_2:17748073-17748092 None:intergenic 25.0%
!! GTTTGTTAAACAAATGTGTT+TGG + chr8_2:17748140-17748159 Msa1238020:intron 25.0%
! AAAAAGCCAATAATATGAGA+AGG + chr8_2:17748400-17748419 Msa1238020:intron 25.0%
! AAAAGCCAATAATATGAGAA+GGG + chr8_2:17748401-17748420 Msa1238020:intron 25.0%
!! TTTTTCCCTTCTCATATTAT+TGG - chr8_2:17748409-17748428 None:intergenic 25.0%
!! CTCATATTTAGAACACATAA+TGG - chr8_2:17748493-17748512 None:intergenic 25.0%
!! CATTATGTGTTCTAAATATG+AGG + chr8_2:17748491-17748510 Msa1238020:intron 25.0%
!!! TTCCTTTCTTTGATGATTTT+AGG + chr8_2:17748593-17748612 Msa1238020:intron 25.0%
! AACCTAAAATCATCAAAGAA+AGG - chr8_2:17748598-17748617 None:intergenic 25.0%
! ACAGAAAAAATCCAAACTAA+TGG + chr8_2:17749058-17749077 Msa1238020:intron 25.0%
! CAGAAAAAATCCAAACTAAT+GGG + chr8_2:17749059-17749078 Msa1238020:intron 25.0%
! GATATTGAATGATAGAAATC+AGG + chr8_2:17749125-17749144 Msa1238020:intron 25.0%
!!! GTTGTTCTGAAAGTATATAA+AGG - chr8_2:17749267-17749286 None:intergenic 25.0%
! AAATGTAACAATTTCACAGA+TGG + chr8_2:17749586-17749605 Msa1238020:intron 25.0%
! AATGTAACAATTTCACAGAT+GGG + chr8_2:17749587-17749606 Msa1238020:intron 25.0%
!!! ACGAATTTGATTTGGAAATT+GGG - chr8_2:17749749-17749768 None:intergenic 25.0%
! TGTAATAACAACAACAAATG+TGG + chr8_2:17750023-17750042 Msa1238020:CDS 25.0%
! ACCTTGTTGTGATAACAAAA+TGG + chr8_2:17747613-17747632 Msa1238020:CDS 30.0%
! CCTTGTTGTGATAACAAAAT+GGG + chr8_2:17747614-17747633 Msa1238020:CDS 30.0%
! CTTGTTGTGATAACAAAATG+GGG + chr8_2:17747615-17747634 Msa1238020:CDS 30.0%
CAAAAACAGCTTATAGCTAA+TGG + chr8_2:17747929-17747948 Msa1238020:intron 30.0%
!!! GATTTTTTGTGACCCTTTAT+TGG + chr8_2:17748165-17748184 Msa1238020:intron 30.0%
AGAGAAAGTTCCAATCTTTA+TGG + chr8_2:17748245-17748264 Msa1238020:intron 30.0%
AGAAACATAGCCATAAAGAT+TGG - chr8_2:17748258-17748277 None:intergenic 30.0%
TAAAAAAGATGAGCAGAAAG+AGG - chr8_2:17748364-17748383 None:intergenic 30.0%
AAGGGAAAAATTGAAGTAGA+TGG + chr8_2:17748419-17748438 Msa1238020:intron 30.0%
TAACAACATACTGCTTGTAA+AGG - chr8_2:17748455-17748474 None:intergenic 30.0%
! CTAAGGTTTTTATGAGGTTA+AGG + chr8_2:17748514-17748533 Msa1238020:intron 30.0%
TTCTGAATCAAGTAGGTTTA+TGG + chr8_2:17748537-17748556 Msa1238020:intron 30.0%
! TAGGTTTTTACGTTTCTTTC+AGG + chr8_2:17748612-17748631 Msa1238020:intron 30.0%
CTGTTGAAACAAAGTCTAAA+GGG - chr8_2:17748782-17748801 None:intergenic 30.0%
TCTGTTGAAACAAAGTCTAA+AGG - chr8_2:17748783-17748802 None:intergenic 30.0%
TAGTCAAAAGTAACAGGAAT+AGG - chr8_2:17748856-17748875 None:intergenic 30.0%
!! TTTTGGTAGTCAAAAGTAAC+AGG - chr8_2:17748862-17748881 None:intergenic 30.0%
! AACAGACACTAAATAGGTTT+TGG - chr8_2:17748879-17748898 None:intergenic 30.0%
AAACCTATTTAGTGTCTGTT+TGG + chr8_2:17748879-17748898 Msa1238020:intron 30.0%
AATCCAAACAGACACTAAAT+AGG - chr8_2:17748885-17748904 None:intergenic 30.0%
! TCTAAAACTCAGTAAATGTG+AGG + chr8_2:17748970-17748989 Msa1238020:intron 30.0%
!!! TTGGATTTTTTCTGTTCAAC+TGG - chr8_2:17749053-17749072 None:intergenic 30.0%
ATTGAATGATAGAAATCAGG+TGG + chr8_2:17749128-17749147 Msa1238020:intron 30.0%
AGAAATCAGGTGGATATTTA+TGG + chr8_2:17749138-17749157 Msa1238020:intron 30.0%
TTGACCATTGAAATACCTTT+CGG + chr8_2:17749294-17749313 Msa1238020:intron 30.0%
AAATATAGCCATGGAGAAAA+TGG - chr8_2:17749551-17749570 None:intergenic 30.0%
ACAATGAGATCAAGAATCTA+TGG + chr8_2:17749643-17749662 Msa1238020:CDS 30.0%
!! GACGAATTTGATTTGGAAAT+TGG - chr8_2:17749750-17749769 None:intergenic 30.0%
CAATAACAACATTCCTTCTT+TGG + chr8_2:17749854-17749873 Msa1238020:CDS 30.0%
CTGACTATTTCCTTAAGATA+TGG + chr8_2:17749895-17749914 Msa1238020:CDS 30.0%
AACTACAAGTCATTTGATGT+AGG + chr8_2:17750101-17750120 Msa1238020:CDS 30.0%
!! CCCATTTTGTTATCACAACA+AGG - chr8_2:17747617-17747636 None:intergenic 35.0%
AACAAAATGGGGTTGAAGAA+AGG + chr8_2:17747626-17747645 Msa1238020:CDS 35.0%
ATCAAGAAAAATGGTGGTCA+TGG + chr8_2:17747689-17747708 Msa1238020:CDS 35.0%
CTTCAAAAACCTGCTAACTT+AGG - chr8_2:17747731-17747750 None:intergenic 35.0%
! GTGTTCTAAATATGAGGCTA+AGG + chr8_2:17748497-17748516 Msa1238020:intron 35.0%
! ATGAGGCTAAGGTTTTTATG+AGG + chr8_2:17748508-17748527 Msa1238020:intron 35.0%
!! GTTAAGGTTCTGAATCAAGT+AGG + chr8_2:17748530-17748549 Msa1238020:intron 35.0%
CTAAGACCTGATATTAAACG+CGG + chr8_2:17748681-17748700 Msa1238020:CDS 35.0%
! TTTTCTTCCTCAGGTGTAAA+GGG - chr8_2:17748708-17748727 None:intergenic 35.0%
! TTTTTCTTCCTCAGGTGTAA+AGG - chr8_2:17748709-17748728 None:intergenic 35.0%
!!! ATGACTAGTTTTTCTTCCTC+AGG - chr8_2:17748717-17748736 None:intergenic 35.0%
TTAGTGTCTGTTTGGATTGA+TGG + chr8_2:17748887-17748906 Msa1238020:intron 35.0%
!!! GATTTTTTCTGTTCAACTGG+AGG - chr8_2:17749050-17749069 None:intergenic 35.0%
TATTTCAAATGAGCCTAAGC+AGG - chr8_2:17749092-17749111 None:intergenic 35.0%
! TTTCATGACCATTTTCTCCA+TGG + chr8_2:17749540-17749559 Msa1238020:intron 35.0%
AAAGAAACGTCTCATATGCA+TGG + chr8_2:17749677-17749696 Msa1238020:CDS 35.0%
AAGAAACGTCTCATATGCAT+GGG + chr8_2:17749678-17749697 Msa1238020:CDS 35.0%
AAGTAATGTGATGAGGCTAT+TGG - chr8_2:17749726-17749745 None:intergenic 35.0%
AATTGGGAAGTAATGTGATG+AGG - chr8_2:17749733-17749752 None:intergenic 35.0%
CTTCAGAGTTCCATATCTTA+AGG - chr8_2:17749908-17749927 None:intergenic 35.0%
!! AAGATATGGAACTCTGAAGT+TGG + chr8_2:17749909-17749928 Msa1238020:CDS 35.0%
AGAGTTCAATGTCTCAAGAA+GGG + chr8_2:17749994-17750013 Msa1238020:CDS 35.0%
TACTACAACAAGCAATGTGA+TGG + chr8_2:17750061-17750080 Msa1238020:CDS 35.0%
!! ATGTGATGGAGGATTTTGAA+TGG + chr8_2:17750075-17750094 Msa1238020:CDS 35.0%
AAGCTCATGTCATTGTTAGA+AGG - chr8_2:17750200-17750219 None:intergenic 35.0%
TCATCTTCTTCACTAGTCCA+TGG - chr8_2:17747653-17747672 None:intergenic 40.0%
CGCGTTTAATATCAGGTCTT+AGG - chr8_2:17748683-17748702 None:intergenic 40.0%
! AAAGTACCTGTTTCCAAGGA+TGG - chr8_2:17748751-17748770 None:intergenic 40.0%
!! CAAGAAAGTACCTGTTTCCA+AGG - chr8_2:17748755-17748774 None:intergenic 40.0%
! CTCAGTAAATGTGAGGTGTT+TGG + chr8_2:17748977-17748996 Msa1238020:intron 40.0%
TTCTGTTCAACTGGAGGAAT+AGG - chr8_2:17749044-17749063 None:intergenic 40.0%
AGGCACAATTCCCATTAGTT+TGG - chr8_2:17749072-17749091 None:intergenic 40.0%
GAACATGGTTCATCTACTGA+GGG - chr8_2:17749321-17749340 None:intergenic 40.0%
ATCTCATTGTCAGTTCTTCC+TGG - chr8_2:17749633-17749652 None:intergenic 40.0%
!! GCTATTGGTTCATGAGTTTG+TGG - chr8_2:17749711-17749730 None:intergenic 40.0%
GGCGATAGACGAATTTGATT+TGG - chr8_2:17749757-17749776 None:intergenic 40.0%
!! GTTTTGTTGCTTGCCAAAGA+AGG - chr8_2:17749870-17749889 None:intergenic 40.0%
CTTCTTGAGACATTGAACTC+TGG - chr8_2:17749995-17750014 None:intergenic 40.0%
CAGAGTTCAATGTCTCAAGA+AGG + chr8_2:17749993-17750012 Msa1238020:CDS 40.0%
TACAACAAGCAATGTGATGG+AGG + chr8_2:17750064-17750083 Msa1238020:CDS 40.0%
AAAATGGTGGTCATGGAAGC+TGG + chr8_2:17747696-17747715 Msa1238020:CDS 45.0%
CGTTCTCTTCCTAAGTTAGC+AGG + chr8_2:17747719-17747738 Msa1238020:CDS 45.0%
AACTCTTACCGCAACGAAGA+AGG - chr8_2:17748638-17748657 None:intergenic 45.0%
! GGTAGTTTGTCCATCTTAGC+CGG - chr8_2:17748662-17748681 None:intergenic 45.0%
AAGGGACCGCGTTTAATATC+AGG - chr8_2:17748690-17748709 None:intergenic 45.0%
ATACAGCTTCATGCCATCCT+TGG + chr8_2:17748735-17748754 Msa1238020:CDS 45.0%
TTCATGCCATCCTTGGAAAC+AGG + chr8_2:17748742-17748761 Msa1238020:CDS 45.0%
AATGGGAATTGTGCCTGCTT+AGG + chr8_2:17749076-17749095 Msa1238020:intron 45.0%
CATAATAGGGCTGTCACATG+TGG + chr8_2:17749227-17749246 Msa1238020:intron 45.0%
!! GGGTCCGAAAGGTATTTCAA+TGG - chr8_2:17749301-17749320 None:intergenic 45.0%
CGAACATGGTTCATCTACTG+AGG - chr8_2:17749322-17749341 None:intergenic 45.0%
CACTGAACACGAATCGAACA+TGG - chr8_2:17749336-17749355 None:intergenic 45.0%
!! CACGTGTGTTAGTGTCGTTT+CGG - chr8_2:17749383-17749402 None:intergenic 45.0%
CAAGACTTGAAGCAGAAGCA+AGG + chr8_2:17749805-17749824 Msa1238020:CDS 45.0%
! GTTGGACAATCTTTTCGCAC+CGG + chr8_2:17749927-17749946 Msa1238020:CDS 45.0%
AGACATTGAACTCTGGCACT+TGG - chr8_2:17749988-17750007 None:intergenic 45.0%
TGGGGTTGAAGAAAGGTCCA+TGG + chr8_2:17747633-17747652 Msa1238020:CDS 50.0%
CTTTCAGGCCTTCTTCGTTG+CGG + chr8_2:17748627-17748646 Msa1238020:intron 50.0%
TTCGTTGCGGTAAGAGTTGC+CGG + chr8_2:17748640-17748659 Msa1238020:CDS 50.0%
! GTAAGAGTTGCCGGCTAAGA+TGG + chr8_2:17748649-17748668 Msa1238020:CDS 50.0%
!! GTGCACTTTAGAGTGCTGAG+TGG + chr8_2:17748829-17748848 Msa1238020:intron 50.0%
AATAGGGCTGTCACATGTGG+TGG + chr8_2:17749230-17749249 Msa1238020:intron 50.0%
TCATCTACTGAGGGTCCGAA+AGG - chr8_2:17749312-17749331 None:intergenic 50.0%
TCAATTGCCTCTCAGCTACC+AGG + chr8_2:17749612-17749631 Msa1238020:CDS 50.0%
AGTTCTTCCTGGTAGCTGAG+AGG - chr8_2:17749622-17749641 None:intergenic 50.0%
CACTTTCCCATTGAGCCATG+TGG - chr8_2:17749785-17749804 None:intergenic 50.0%
! TTCGTCGTCTGATTTGCGAC+CGG - chr8_2:17749949-17749968 None:intergenic 50.0%
CACTGCACTGCAACTCTTGT+TGG + chr8_2:17750169-17750188 Msa1238020:CDS 50.0%
CACACGCCACATGGCTCAAT+GGG + chr8_2:17749776-17749795 Msa1238020:CDS 55.0%
ACGCGGTCCCTTTACACCTG+AGG + chr8_2:17748698-17748717 Msa1238020:CDS 60.0%
GTCTATCGCCACACGCCACA+TGG + chr8_2:17749767-17749786 Msa1238020:CDS 60.0%
CCATTGAGCCATGTGGCGTG+TGG - chr8_2:17749778-17749797 None:intergenic 60.0%
CCACACGCCACATGGCTCAA+TGG + chr8_2:17749775-17749794 Msa1238020:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 17747602 17750229 17747602 ID=Msa1238020;Name=Msa1238020
chr8_2 mRNA 17747602 17750229 17747602 ID=Msa1238020-mRNA-1;Parent=Msa1238020;Name=Msa1238020-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|1|0.33|1|1|1|3|0|297
chr8_2 exon 17747602 17747740 17747602 ID=Msa1238020-mRNA-1:exon:6761;Parent=Msa1238020-mRNA-1
chr8_2 exon 17748634 17748763 17748634 ID=Msa1238020-mRNA-1:exon:6762;Parent=Msa1238020-mRNA-1
chr8_2 exon 17749605 17750229 17749605 ID=Msa1238020-mRNA-1:exon:6763;Parent=Msa1238020-mRNA-1
chr8_2 CDS 17747602 17747740 17747602 ID=Msa1238020-mRNA-1:cds;Parent=Msa1238020-mRNA-1
chr8_2 CDS 17748634 17748763 17748634 ID=Msa1238020-mRNA-1:cds;Parent=Msa1238020-mRNA-1
chr8_2 CDS 17749605 17750229 17749605 ID=Msa1238020-mRNA-1:cds;Parent=Msa1238020-mRNA-1
Gene Sequence

>Msa1238020

ATGGGAAGAACACCTTGTTGTGATAACAAAATGGGGTTGAAGAAAGGTCCATGGACTAGTGAAGAAGATGAAGTTCTTGTTAATTTTATCAAGAAAAATGGTGGTCATGGAAGCTGGCGTTCTCTTCCTAAGTTAGCAGGCCTTCTTCGTTGCGGTAAGAGTTGCCGGCTAAGATGGACAAACTACCTAAGACCTGATATTAAACGCGGTCCCTTTACACCTGAGGAAGAAAAACTAGTCATACAGCTTCATGCCATCCTTGGAAACAGATGGGCTTCAATTGCCTCTCAGCTACCAGGAAGAACTGACAATGAGATCAAGAATCTATGGAACACACACTTAAAGAAACGTCTCATATGCATGGGAATTGATCCACAAACTCATGAACCAATAGCCTCATCACATTACTTCCCAATTTCCAAATCAAATTCGTCTATCGCCACACGCCACATGGCTCAATGGGAAAGTGCAAGACTTGAAGCAGAAGCAAGGCTCTCAAAAGACACATCTTTAATCAACAATAACAACATTCCTTCTTTGGCAAGCAACAAAACTGATTCTGACTATTTCCTTAAGATATGGAACTCTGAAGTTGGACAATCTTTTCGCACCGGTCGCAAATCAGACGACGAAGACGATGATGATAAAACCAAGTGCCAGAGTTCAATGTCTCAAGAAGGGTCATCTTGTAATAACAACAACAAATGTGGATCAATTTCTGTTACTACTACAACAAGCAATGTGATGGAGGATTTTGAATGGAGAAACTACAAGTCATTTGATGTAGGTTATGATGATTCATCAAGCTCTAATGATCTTGAAGACTCATCTGACACTGCACTGCAACTCTTGTTGGATTTTCCTTCTAACAATGACATGAGCTTCTTAGAATGA
Protein sequence

>Msa1238020

MGRTPCCDNKMGLKKGPWTSEEDEVLVNFIKKNGGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGPFTPEEEKLVIQLHAILGNRWASIASQLPGRTDNEIKNLWNTHLKKRLICMGIDPQTHEPIASSHYFPISKSNSSIATRHMAQWESARLEAEARLSKDTSLINNNNIPSLASNKTDSDYFLKIWNSEVGQSFRTGRKSDDEDDDDKTKCQSSMSQEGSSCNNNNKCGSISVTTTTSNVMEDFEWRNYKSFDVGYDDSSSSNDLEDSSDTALQLLLDFPSNNDMSFLE*