Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1238340 | KEH18910.1 | 99.024 | 205 | 2 | 0 | 1 | 205 | 1 | 205 | 1.33e-148 | 421 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1238340 | sp|Q500W4|PLI2C_ARATH | 69.697 | 198 | 56 | 2 | 2 | 195 | 3 | 200 | 1.05e-102 | 298 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1238340 | A0A072TZG0 | 99.024 | 205 | 2 | 0 | 1 | 205 | 1 | 205 | 6.34e-149 | 421 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1238340 | TF | LIM |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1238340 | MtrunA17_Chr8g0349391 | 99.024 | 205 | 2 | 0 | 1 | 205 | 1 | 205 | 1.22e-152 | 421 |
| Msa1238340 | MtrunA17_Chr7g0247111 | 77.295 | 207 | 45 | 2 | 1 | 205 | 1 | 207 | 4.32e-112 | 318 |
| Msa1238340 | MtrunA17_Chr3g0113051 | 61.497 | 187 | 66 | 2 | 1 | 181 | 1 | 187 | 3.31e-83 | 245 |
| Msa1238340 | MtrunA17_Chr8g0386501 | 54.680 | 203 | 86 | 3 | 1 | 202 | 1 | 198 | 4.83e-75 | 225 |
| Msa1238340 | MtrunA17_Chr1g0152431 | 48.718 | 195 | 93 | 3 | 1 | 189 | 1 | 194 | 9.45e-63 | 193 |
| Msa1238340 | MtrunA17_Chr4g0059371 | 48.045 | 179 | 80 | 2 | 2 | 171 | 3 | 177 | 6.27e-57 | 178 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1238340 | AT3G61230.1 | 69.697 | 198 | 56 | 2 | 2 | 195 | 3 | 200 | 1.06e-103 | 298 |
| Msa1238340 | AT1G01780.1 | 67.500 | 200 | 65 | 0 | 1 | 200 | 1 | 200 | 1.87e-101 | 292 |
| Msa1238340 | AT2G45800.1 | 70.098 | 204 | 55 | 4 | 1 | 198 | 1 | 204 | 1.20e-100 | 291 |
| Msa1238340 | AT3G55770.3 | 67.232 | 177 | 54 | 2 | 1 | 173 | 1 | 177 | 1.76e-88 | 259 |
| Msa1238340 | AT3G55770.5 | 67.232 | 177 | 54 | 2 | 1 | 173 | 1 | 177 | 1.76e-88 | 259 |
| Msa1238340 | AT3G55770.2 | 67.232 | 177 | 54 | 2 | 1 | 173 | 1 | 177 | 1.76e-88 | 259 |
| Msa1238340 | AT3G55770.1 | 67.232 | 177 | 54 | 2 | 1 | 173 | 1 | 177 | 1.76e-88 | 259 |
| Msa1238340 | AT2G39900.1 | 66.292 | 178 | 55 | 2 | 1 | 173 | 1 | 178 | 2.46e-87 | 256 |
| Msa1238340 | AT3G55770.7 | 56.398 | 211 | 54 | 3 | 1 | 173 | 1 | 211 | 1.66e-80 | 240 |
| Msa1238340 | AT3G55770.7 | 42.857 | 98 | 54 | 1 | 97 | 194 | 3 | 98 | 2.50e-19 | 83.2 |
| Msa1238340 | AT3G55770.7 | 35.088 | 114 | 40 | 1 | 3 | 82 | 101 | 214 | 2.34e-14 | 69.7 |
| Msa1238340 | AT2G45800.2 | 65.116 | 172 | 51 | 6 | 34 | 198 | 4 | 173 | 1.40e-70 | 213 |
| Msa1238340 | AT2G45800.2 | 52.113 | 71 | 34 | 0 | 3 | 73 | 68 | 138 | 6.49e-21 | 86.3 |
| Msa1238340 | AT1G10200.1 | 50.286 | 175 | 81 | 2 | 1 | 169 | 1 | 175 | 9.84e-61 | 188 |
| Msa1238340 | AT3G55770.4 | 65.414 | 133 | 41 | 3 | 1 | 129 | 1 | 132 | 2.93e-56 | 175 |
| Msa1238340 | AT3G55770.4 | 42.857 | 98 | 54 | 1 | 97 | 194 | 3 | 98 | 1.45e-20 | 84.0 |
| Msa1238340 | AT3G55770.6 | 66.142 | 127 | 37 | 3 | 1 | 121 | 1 | 127 | 1.19e-53 | 168 |
| Msa1238340 | AT3G55770.6 | 42.857 | 98 | 54 | 1 | 97 | 194 | 3 | 98 | 8.83e-21 | 84.3 |
| Msa1238340 | AT1G10200.2 | 45.385 | 130 | 65 | 2 | 46 | 169 | 4 | 133 | 2.32e-37 | 127 |
| Msa1238340 | AT1G10200.2 | 48.611 | 72 | 37 | 0 | 3 | 74 | 61 | 132 | 2.30e-17 | 75.9 |
Find 35 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATTCAAGAGGTTTCTTC+TGG | 0.235129 | 8_2:-18363315 | None:intergenic |
| GTTTCTTCTGGATGATCTTC+AGG | 0.252303 | 8_2:-18363303 | None:intergenic |
| TCAAGCTATGCTGCTCTTGA+TGG | 0.353414 | 8_2:+18363135 | Msa1238340:CDS |
| CAAAATGAACCCTGCAGTAT+AGG | 0.377575 | 8_2:-18363161 | None:intergenic |
| AGCAAGTCGCACATTTGTCC+AGG | 0.436853 | 8_2:-18362726 | None:intergenic |
| TGCTTTAGGTGTGCTCATGC+AGG | 0.437095 | 8_2:+18363096 | Msa1238340:CDS |
| TTGATGGTGTCCTATACTGC+AGG | 0.448405 | 8_2:+18363151 | Msa1238340:CDS |
| TCTACCACAAGACATGCTTT+AGG | 0.453453 | 8_2:+18363082 | Msa1238340:CDS |
| AACCGTCTATCCACTGGAAA+AGG | 0.456725 | 8_2:+18362753 | Msa1238340:CDS |
| CTCTAAAACCGTCTATCCAC+TGG | 0.500295 | 8_2:+18362747 | Msa1238340:CDS |
| GAAGAAAACATGTCTTTCAC+TGG | 0.519623 | 8_2:+18361674 | None:intergenic |
| TTGTTACTGTTTCATTCAAG+AGG | 0.524503 | 8_2:-18363325 | None:intergenic |
| TTCCATGTTCAGTGGTACCC+TGG | 0.525905 | 8_2:+18362708 | Msa1238340:CDS |
| TCATTGCAAGGGAAATCTTA+CGG | 0.534756 | 8_2:+18361796 | Msa1238340:CDS |
| AACATGGAAGATAGTCTACT+TGG | 0.545011 | 8_2:-18362694 | None:intergenic |
| GGTGCTTCTGCTGATTGTGA+AGG | 0.545791 | 8_2:-18363282 | None:intergenic |
| ATTAAACAGGTGACACTGGA+AGG | 0.549370 | 8_2:+18363054 | Msa1238340:intron |
| CTTCAAATGTAGTCATTGCA+AGG | 0.555260 | 8_2:+18361784 | Msa1238340:CDS |
| GCAATAGAGAATTCCATCCA+TGG | 0.558350 | 8_2:-18362120 | None:intergenic |
| AGTACATACTCCTCCATGGA+TGG | 0.562913 | 8_2:+18362107 | Msa1238340:CDS |
| TTCTGACAAAGCAAATGAGC+TGG | 0.565336 | 8_2:+18362336 | Msa1238340:CDS |
| TACTCAAATCTGCACACAAG+AGG | 0.573033 | 8_2:+18363220 | Msa1238340:CDS |
| GCTTTAGGTGTGCTCATGCA+GGG | 0.590942 | 8_2:+18363097 | Msa1238340:CDS |
| TTCAAATGTAGTCATTGCAA+GGG | 0.595286 | 8_2:+18361785 | Msa1238340:CDS |
| TGATGGTGTCCTATACTGCA+GGG | 0.598936 | 8_2:+18363152 | Msa1238340:CDS |
| GATGAGTACATACTCCTCCA+TGG | 0.608526 | 8_2:+18362103 | Msa1238340:intron |
| GTCCAGGGTACCACTGAACA+TGG | 0.612761 | 8_2:-18362710 | None:intergenic |
| GCATAGCTTGAATGTGTGAG+AGG | 0.618734 | 8_2:-18363123 | None:intergenic |
| AAATCTGCACACAAGAGGAA+TGG | 0.618865 | 8_2:+18363225 | Msa1238340:CDS |
| TGGAACTCTTGATAAATGCA+AGG | 0.629692 | 8_2:+18361694 | Msa1238340:CDS |
| CATAGCTTGAATGTGTGAGA+GGG | 0.638300 | 8_2:-18363122 | None:intergenic |
| AGACTATCTTCCATGTTCAG+TGG | 0.654978 | 8_2:+18362700 | Msa1238340:CDS |
| GCAAGTCGCACATTTGTCCA+GGG | 0.661497 | 8_2:-18362725 | None:intergenic |
| CACACCTAAAGCATGTCTTG+TGG | 0.697099 | 8_2:-18363086 | None:intergenic |
| ATAGAGAATTCCATCCATGG+AGG | 0.764020 | 8_2:-18362117 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATAATTTTTTGTTCATTT+TGG | + | chr8_2:18362280-18362299 | Msa1238340:intron | 10.0% |
| !! | TAAAATAAAAATTCAAGTAA+TGG | - | chr8_2:18362405-18362424 | None:intergenic | 10.0% |
| !! | AATTTATCTCTAATAATTTA+TGG | - | chr8_2:18362505-18362524 | None:intergenic | 10.0% |
| !!! | AATTGTTTCTTTTAAAAATT+TGG | + | chr8_2:18362840-18362859 | Msa1238340:intron | 10.0% |
| !!! | ATATAATTTTTTGTTCATTT+TGG | + | chr8_2:18362280-18362299 | Msa1238340:intron | 10.0% |
| !! | TAAAATAAAAATTCAAGTAA+TGG | - | chr8_2:18362405-18362424 | None:intergenic | 10.0% |
| !! | AATTTATCTCTAATAATTTA+TGG | - | chr8_2:18362505-18362524 | None:intergenic | 10.0% |
| !!! | AATTGTTTCTTTTAAAAATT+TGG | + | chr8_2:18362840-18362859 | Msa1238340:intron | 10.0% |
| !!! | TTAAAGCTTCAATTTATTTT+TGG | + | chr8_2:18362024-18362043 | Msa1238340:intron | 15.0% |
| !! | AAAATAAAAAATGAAGGATT+TGG | - | chr8_2:18362207-18362226 | None:intergenic | 15.0% |
| !! | AAAATTATATGTGTATCAAT+TGG | - | chr8_2:18362270-18362289 | None:intergenic | 15.0% |
| !!! | TTTTTTTGGTTTTATTAAAC+AGG | + | chr8_2:18363041-18363060 | Msa1238340:intron | 15.0% |
| !!! | TTAAAGCTTCAATTTATTTT+TGG | + | chr8_2:18362024-18362043 | Msa1238340:intron | 15.0% |
| !! | AAAATAAAAAATGAAGGATT+TGG | - | chr8_2:18362207-18362226 | None:intergenic | 15.0% |
| !! | AAAATTATATGTGTATCAAT+TGG | - | chr8_2:18362270-18362289 | None:intergenic | 15.0% |
| !!! | TTTTTTTGGTTTTATTAAAC+AGG | + | chr8_2:18363041-18363060 | Msa1238340:intron | 15.0% |
| !!! | TACAGCTTGTTTTAAAATTT+AGG | - | chr8_2:18362000-18362019 | None:intergenic | 20.0% |
| !! | TAAAAGATAAAGATACGATA+TGG | - | chr8_2:18362368-18362387 | None:intergenic | 20.0% |
| !!! | AGACAAATTTCATATCTTTT+TGG | - | chr8_2:18362473-18362492 | None:intergenic | 20.0% |
| !!! | GCTTTTTTAAATCAAATTCT+TGG | - | chr8_2:18362893-18362912 | None:intergenic | 20.0% |
| !! | AATATGGAATTCATAAATGA+AGG | + | chr8_2:18362979-18362998 | Msa1238340:intron | 20.0% |
| !!! | TACAGCTTGTTTTAAAATTT+AGG | - | chr8_2:18362000-18362019 | None:intergenic | 20.0% |
| !! | TAAAAGATAAAGATACGATA+TGG | - | chr8_2:18362368-18362387 | None:intergenic | 20.0% |
| !!! | AGACAAATTTCATATCTTTT+TGG | - | chr8_2:18362473-18362492 | None:intergenic | 20.0% |
| !!! | GCTTTTTTAAATCAAATTCT+TGG | - | chr8_2:18362893-18362912 | None:intergenic | 20.0% |
| !! | AATATGGAATTCATAAATGA+AGG | + | chr8_2:18362979-18362998 | Msa1238340:intron | 20.0% |
| !!! | ATGCTTATTTGAAGCATTTT+AGG | + | chr8_2:18361932-18361951 | Msa1238340:intron | 25.0% |
| ! | CCAATATTCAATAATGTCAT+TGG | - | chr8_2:18362079-18362098 | None:intergenic | 25.0% |
| ! | CCAATGACATTATTGAATAT+TGG | + | chr8_2:18362076-18362095 | Msa1238340:intron | 25.0% |
| ! | AAAAAGTTGAATTAGCCATA+TGG | + | chr8_2:18362437-18362456 | Msa1238340:intron | 25.0% |
| ! | AATTAGCCATATGGAAATTA+GGG | + | chr8_2:18362446-18362465 | Msa1238340:intron | 25.0% |
| !! | TCTTTCTAGTAGTGATATAA+AGG | + | chr8_2:18362566-18362585 | Msa1238340:intron | 25.0% |
| !!! | GTATTGATCTTTTACAGAAT+AGG | + | chr8_2:18362668-18362687 | Msa1238340:intron | 25.0% |
| !! | AACAATTTTCCACAAAATCA+AGG | - | chr8_2:18362827-18362846 | None:intergenic | 25.0% |
| ! | TTACCTGATTTCATATAACT+TGG | + | chr8_2:18362866-18362885 | Msa1238340:intron | 25.0% |
| ! | TTTAAACACAAGCTGTAATA+TGG | + | chr8_2:18362963-18362982 | Msa1238340:intron | 25.0% |
| !! | AAAAAATGTGTTACGACTTT+TGG | - | chr8_2:18363027-18363046 | None:intergenic | 25.0% |
| !!! | AAAGTCGTAACACATTTTTT+TGG | + | chr8_2:18363027-18363046 | Msa1238340:intron | 25.0% |
| !!! | ATGCTTATTTGAAGCATTTT+AGG | + | chr8_2:18361932-18361951 | Msa1238340:intron | 25.0% |
| ! | CCAATATTCAATAATGTCAT+TGG | - | chr8_2:18362079-18362098 | None:intergenic | 25.0% |
| ! | CCAATGACATTATTGAATAT+TGG | + | chr8_2:18362076-18362095 | Msa1238340:intron | 25.0% |
| ! | AAAAAGTTGAATTAGCCATA+TGG | + | chr8_2:18362437-18362456 | Msa1238340:intron | 25.0% |
| ! | AATTAGCCATATGGAAATTA+GGG | + | chr8_2:18362446-18362465 | Msa1238340:intron | 25.0% |
| !! | TCTTTCTAGTAGTGATATAA+AGG | + | chr8_2:18362566-18362585 | Msa1238340:intron | 25.0% |
| !!! | GTATTGATCTTTTACAGAAT+AGG | + | chr8_2:18362668-18362687 | Msa1238340:intron | 25.0% |
| !! | AACAATTTTCCACAAAATCA+AGG | - | chr8_2:18362827-18362846 | None:intergenic | 25.0% |
| ! | TTACCTGATTTCATATAACT+TGG | + | chr8_2:18362866-18362885 | Msa1238340:intron | 25.0% |
| ! | TTTAAACACAAGCTGTAATA+TGG | + | chr8_2:18362963-18362982 | Msa1238340:intron | 25.0% |
| !! | AAAAAATGTGTTACGACTTT+TGG | - | chr8_2:18363027-18363046 | None:intergenic | 25.0% |
| !!! | AAAGTCGTAACACATTTTTT+TGG | + | chr8_2:18363027-18363046 | Msa1238340:intron | 25.0% |
| !! | TACATTTGAAGCAGCTTTTA+TGG | - | chr8_2:18361775-18361794 | None:intergenic | 30.0% |
| TTCAAATGTAGTCATTGCAA+GGG | + | chr8_2:18361785-18361804 | Msa1238340:CDS | 30.0% | |
| ! | AGGAGCATATGAAGAATTTA+AGG | - | chr8_2:18361859-18361878 | None:intergenic | 30.0% |
| ATGTCATTGGTATCTCATTT+AGG | - | chr8_2:18362066-18362085 | None:intergenic | 30.0% | |
| ! | ACATTTTGAACAGCTTTTCA+AGG | + | chr8_2:18362148-18362167 | Msa1238340:CDS | 30.0% |
| GAATTAGCCATATGGAAATT+AGG | + | chr8_2:18362445-18362464 | Msa1238340:intron | 30.0% | |
| ! | TTCATAAATGAAGGTGCATT+CGG | + | chr8_2:18362988-18363007 | Msa1238340:intron | 30.0% |
| ! | TTTTATTAAACAGGTGACAC+TGG | + | chr8_2:18363050-18363069 | Msa1238340:intron | 30.0% |
| ! | TCATTTTGCACAACTTTTCA+TGG | + | chr8_2:18363176-18363195 | Msa1238340:CDS | 30.0% |
| !! | TACATTTGAAGCAGCTTTTA+TGG | - | chr8_2:18361775-18361794 | None:intergenic | 30.0% |
| TTCAAATGTAGTCATTGCAA+GGG | + | chr8_2:18361785-18361804 | Msa1238340:CDS | 30.0% | |
| ! | AGGAGCATATGAAGAATTTA+AGG | - | chr8_2:18361859-18361878 | None:intergenic | 30.0% |
| ATGTCATTGGTATCTCATTT+AGG | - | chr8_2:18362066-18362085 | None:intergenic | 30.0% | |
| ! | ACATTTTGAACAGCTTTTCA+AGG | + | chr8_2:18362148-18362167 | Msa1238340:CDS | 30.0% |
| GAATTAGCCATATGGAAATT+AGG | + | chr8_2:18362445-18362464 | Msa1238340:intron | 30.0% | |
| ! | TTCATAAATGAAGGTGCATT+CGG | + | chr8_2:18362988-18363007 | Msa1238340:intron | 30.0% |
| ! | TTTTATTAAACAGGTGACAC+TGG | + | chr8_2:18363050-18363069 | Msa1238340:intron | 30.0% |
| ! | TCATTTTGCACAACTTTTCA+TGG | + | chr8_2:18363176-18363195 | Msa1238340:CDS | 30.0% |
| TGGAACTCTTGATAAATGCA+AGG | + | chr8_2:18361694-18361713 | Msa1238340:CDS | 35.0% | |
| ! | TTGAAGCAGCTTTTATGGTA+TGG | - | chr8_2:18361770-18361789 | None:intergenic | 35.0% |
| CTTCAAATGTAGTCATTGCA+AGG | + | chr8_2:18361784-18361803 | Msa1238340:CDS | 35.0% | |
| TCATTGCAAGGGAAATCTTA+CGG | + | chr8_2:18361796-18361815 | Msa1238340:CDS | 35.0% | |
| !! | GGCAATTTTAGCAAGAACTT+TGG | + | chr8_2:18362176-18362195 | Msa1238340:CDS | 35.0% |
| TTTGGTCCCTAATTTCCATA+TGG | - | chr8_2:18362455-18362474 | None:intergenic | 35.0% | |
| AACATGGAAGATAGTCTACT+TGG | - | chr8_2:18362697-18362716 | None:intergenic | 35.0% | |
| ! | TGTTGTGATCCTTGATTTTG+TGG | + | chr8_2:18362815-18362834 | Msa1238340:intron | 35.0% |
| GGTCCAAGTTATATGAAATC+AGG | - | chr8_2:18362872-18362891 | None:intergenic | 35.0% | |
| AAAGCAATCATACGTTTCGT+TGG | + | chr8_2:18362908-18362927 | Msa1238340:intron | 35.0% | |
| ATCATACGTTTCGTTGGATA+TGG | + | chr8_2:18362914-18362933 | Msa1238340:intron | 35.0% | |
| TGGAACTCTTGATAAATGCA+AGG | + | chr8_2:18361694-18361713 | Msa1238340:CDS | 35.0% | |
| ! | TTGAAGCAGCTTTTATGGTA+TGG | - | chr8_2:18361770-18361789 | None:intergenic | 35.0% |
| CTTCAAATGTAGTCATTGCA+AGG | + | chr8_2:18361784-18361803 | Msa1238340:CDS | 35.0% | |
| TCATTGCAAGGGAAATCTTA+CGG | + | chr8_2:18361796-18361815 | Msa1238340:CDS | 35.0% | |
| !! | GGCAATTTTAGCAAGAACTT+TGG | + | chr8_2:18362176-18362195 | Msa1238340:CDS | 35.0% |
| TTTGGTCCCTAATTTCCATA+TGG | - | chr8_2:18362455-18362474 | None:intergenic | 35.0% | |
| AACATGGAAGATAGTCTACT+TGG | - | chr8_2:18362697-18362716 | None:intergenic | 35.0% | |
| ! | TGTTGTGATCCTTGATTTTG+TGG | + | chr8_2:18362815-18362834 | Msa1238340:intron | 35.0% |
| GGTCCAAGTTATATGAAATC+AGG | - | chr8_2:18362872-18362891 | None:intergenic | 35.0% | |
| AAAGCAATCATACGTTTCGT+TGG | + | chr8_2:18362908-18362927 | Msa1238340:intron | 35.0% | |
| ATCATACGTTTCGTTGGATA+TGG | + | chr8_2:18362914-18362933 | Msa1238340:intron | 35.0% | |
| ATAGAGAATTCCATCCATGG+AGG | - | chr8_2:18362120-18362139 | None:intergenic | 40.0% | |
| GCAATAGAGAATTCCATCCA+TGG | - | chr8_2:18362123-18362142 | None:intergenic | 40.0% | |
| !! | GAACAGCTTTTCAAGGAATC+TGG | + | chr8_2:18362155-18362174 | Msa1238340:CDS | 40.0% |
| TTCTGACAAAGCAAATGAGC+TGG | + | chr8_2:18362336-18362355 | Msa1238340:CDS | 40.0% | |
| AGACTATCTTCCATGTTCAG+TGG | + | chr8_2:18362700-18362719 | Msa1238340:CDS | 40.0% | |
| ! | AACCTTTTCCAGTGGATAGA+CGG | - | chr8_2:18362758-18362777 | None:intergenic | 40.0% |
| ! | TGTCGCGATTCTTGATTTTG+AGG | + | chr8_2:18362778-18362797 | Msa1238340:intron | 40.0% |
| ! | TGTGTTACGACTTTTGGTCA+CGG | - | chr8_2:18363021-18363040 | None:intergenic | 40.0% |
| ATTAAACAGGTGACACTGGA+AGG | + | chr8_2:18363054-18363073 | Msa1238340:intron | 40.0% | |
| TCTACCACAAGACATGCTTT+AGG | + | chr8_2:18363082-18363101 | Msa1238340:CDS | 40.0% | |
| CATAGCTTGAATGTGTGAGA+GGG | - | chr8_2:18363125-18363144 | None:intergenic | 40.0% | |
| CAAAATGAACCCTGCAGTAT+AGG | - | chr8_2:18363164-18363183 | None:intergenic | 40.0% | |
| ! | GCACAACTTTTCATGGAGAA+AGG | + | chr8_2:18363183-18363202 | Msa1238340:CDS | 40.0% |
| TACTCAAATCTGCACACAAG+AGG | + | chr8_2:18363220-18363239 | Msa1238340:CDS | 40.0% | |
| AAATCTGCACACAAGAGGAA+TGG | + | chr8_2:18363225-18363244 | Msa1238340:CDS | 40.0% | |
| GTTTCTTCTGGATGATCTTC+AGG | - | chr8_2:18363306-18363325 | None:intergenic | 40.0% | |
| ATAGAGAATTCCATCCATGG+AGG | - | chr8_2:18362120-18362139 | None:intergenic | 40.0% | |
| GCAATAGAGAATTCCATCCA+TGG | - | chr8_2:18362123-18362142 | None:intergenic | 40.0% | |
| !! | GAACAGCTTTTCAAGGAATC+TGG | + | chr8_2:18362155-18362174 | Msa1238340:CDS | 40.0% |
| TTCTGACAAAGCAAATGAGC+TGG | + | chr8_2:18362336-18362355 | Msa1238340:CDS | 40.0% | |
| AGACTATCTTCCATGTTCAG+TGG | + | chr8_2:18362700-18362719 | Msa1238340:CDS | 40.0% | |
| ! | AACCTTTTCCAGTGGATAGA+CGG | - | chr8_2:18362758-18362777 | None:intergenic | 40.0% |
| ! | TGTCGCGATTCTTGATTTTG+AGG | + | chr8_2:18362778-18362797 | Msa1238340:intron | 40.0% |
| ! | TGTGTTACGACTTTTGGTCA+CGG | - | chr8_2:18363021-18363040 | None:intergenic | 40.0% |
| ATTAAACAGGTGACACTGGA+AGG | + | chr8_2:18363054-18363073 | Msa1238340:intron | 40.0% | |
| TCTACCACAAGACATGCTTT+AGG | + | chr8_2:18363082-18363101 | Msa1238340:CDS | 40.0% | |
| CATAGCTTGAATGTGTGAGA+GGG | - | chr8_2:18363125-18363144 | None:intergenic | 40.0% | |
| CAAAATGAACCCTGCAGTAT+AGG | - | chr8_2:18363164-18363183 | None:intergenic | 40.0% | |
| ! | GCACAACTTTTCATGGAGAA+AGG | + | chr8_2:18363183-18363202 | Msa1238340:CDS | 40.0% |
| TACTCAAATCTGCACACAAG+AGG | + | chr8_2:18363220-18363239 | Msa1238340:CDS | 40.0% | |
| AAATCTGCACACAAGAGGAA+TGG | + | chr8_2:18363225-18363244 | Msa1238340:CDS | 40.0% | |
| GTTTCTTCTGGATGATCTTC+AGG | - | chr8_2:18363306-18363325 | None:intergenic | 40.0% | |
| ! | TGGAGGAGTATGTACTCATC+TGG | - | chr8_2:18362103-18362122 | None:intergenic | 45.0% |
| GATGAGTACATACTCCTCCA+TGG | + | chr8_2:18362103-18362122 | Msa1238340:intron | 45.0% | |
| AGTACATACTCCTCCATGGA+TGG | + | chr8_2:18362107-18362126 | Msa1238340:CDS | 45.0% | |
| !! | CTCTAAAACCGTCTATCCAC+TGG | + | chr8_2:18362747-18362766 | Msa1238340:CDS | 45.0% |
| AACCGTCTATCCACTGGAAA+AGG | + | chr8_2:18362753-18362772 | Msa1238340:CDS | 45.0% | |
| CACACCTAAAGCATGTCTTG+TGG | - | chr8_2:18363089-18363108 | None:intergenic | 45.0% | |
| GCATAGCTTGAATGTGTGAG+AGG | - | chr8_2:18363126-18363145 | None:intergenic | 45.0% | |
| TCAAGCTATGCTGCTCTTGA+TGG | + | chr8_2:18363135-18363154 | Msa1238340:CDS | 45.0% | |
| !! | TTGATGGTGTCCTATACTGC+AGG | + | chr8_2:18363151-18363170 | Msa1238340:CDS | 45.0% |
| ! | TGATGGTGTCCTATACTGCA+GGG | + | chr8_2:18363152-18363171 | Msa1238340:CDS | 45.0% |
| ! | TGGAGGAGTATGTACTCATC+TGG | - | chr8_2:18362103-18362122 | None:intergenic | 45.0% |
| GATGAGTACATACTCCTCCA+TGG | + | chr8_2:18362103-18362122 | Msa1238340:intron | 45.0% | |
| AGTACATACTCCTCCATGGA+TGG | + | chr8_2:18362107-18362126 | Msa1238340:CDS | 45.0% | |
| !! | CTCTAAAACCGTCTATCCAC+TGG | + | chr8_2:18362747-18362766 | Msa1238340:CDS | 45.0% |
| AACCGTCTATCCACTGGAAA+AGG | + | chr8_2:18362753-18362772 | Msa1238340:CDS | 45.0% | |
| CACACCTAAAGCATGTCTTG+TGG | - | chr8_2:18363089-18363108 | None:intergenic | 45.0% | |
| GCATAGCTTGAATGTGTGAG+AGG | - | chr8_2:18363126-18363145 | None:intergenic | 45.0% | |
| TCAAGCTATGCTGCTCTTGA+TGG | + | chr8_2:18363135-18363154 | Msa1238340:CDS | 45.0% | |
| !! | TTGATGGTGTCCTATACTGC+AGG | + | chr8_2:18363151-18363170 | Msa1238340:CDS | 45.0% |
| ! | TGATGGTGTCCTATACTGCA+GGG | + | chr8_2:18363152-18363171 | Msa1238340:CDS | 45.0% |
| !! | TATGTATATAAATAATTAAA+AGG | - | chr8_2:18361879-18361898 | None:intergenic | 5.0% |
| !! | AAAATTAAAATAAAAAATGA+AGG | - | chr8_2:18362213-18362232 | None:intergenic | 5.0% |
| !! | TATGTATATAAATAATTAAA+AGG | - | chr8_2:18361879-18361898 | None:intergenic | 5.0% |
| !! | AAAATTAAAATAAAAAATGA+AGG | - | chr8_2:18362213-18362232 | None:intergenic | 5.0% |
| TTCCATGTTCAGTGGTACCC+TGG | + | chr8_2:18362708-18362727 | Msa1238340:CDS | 50.0% | |
| GCAAGTCGCACATTTGTCCA+GGG | - | chr8_2:18362728-18362747 | None:intergenic | 50.0% | |
| AGCAAGTCGCACATTTGTCC+AGG | - | chr8_2:18362729-18362748 | None:intergenic | 50.0% | |
| ! | TCGCGACAAACCTTTTCCAG+TGG | - | chr8_2:18362766-18362785 | None:intergenic | 50.0% |
| ! | CGACTTTTGGTCACGGAGTT+TGG | - | chr8_2:18363014-18363033 | None:intergenic | 50.0% |
| ! | TGCTTTAGGTGTGCTCATGC+AGG | + | chr8_2:18363096-18363115 | Msa1238340:CDS | 50.0% |
| ! | GCTTTAGGTGTGCTCATGCA+GGG | + | chr8_2:18363097-18363116 | Msa1238340:CDS | 50.0% |
| ! | GGTGCTTCTGCTGATTGTGA+AGG | - | chr8_2:18363285-18363304 | None:intergenic | 50.0% |
| TTCCATGTTCAGTGGTACCC+TGG | + | chr8_2:18362708-18362727 | Msa1238340:CDS | 50.0% | |
| GCAAGTCGCACATTTGTCCA+GGG | - | chr8_2:18362728-18362747 | None:intergenic | 50.0% | |
| AGCAAGTCGCACATTTGTCC+AGG | - | chr8_2:18362729-18362748 | None:intergenic | 50.0% | |
| ! | TCGCGACAAACCTTTTCCAG+TGG | - | chr8_2:18362766-18362785 | None:intergenic | 50.0% |
| ! | CGACTTTTGGTCACGGAGTT+TGG | - | chr8_2:18363014-18363033 | None:intergenic | 50.0% |
| ! | TGCTTTAGGTGTGCTCATGC+AGG | + | chr8_2:18363096-18363115 | Msa1238340:CDS | 50.0% |
| ! | GCTTTAGGTGTGCTCATGCA+GGG | + | chr8_2:18363097-18363116 | Msa1238340:CDS | 50.0% |
| ! | GGTGCTTCTGCTGATTGTGA+AGG | - | chr8_2:18363285-18363304 | None:intergenic | 50.0% |
| ! | GTCCAGGGTACCACTGAACA+TGG | - | chr8_2:18362713-18362732 | None:intergenic | 55.0% |
| ! | GTCCAGGGTACCACTGAACA+TGG | - | chr8_2:18362713-18362732 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 18361683 | 18363332 | 18361683 | ID=Msa1238340;Name=Msa1238340 |
| chr8_2 | mRNA | 18361683 | 18363332 | 18361683 | ID=Msa1238340-mRNA-1;Parent=Msa1238340;Name=Msa1238340-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0|1|1|1|5|0|205 |
| chr8_2 | exon | 18361683 | 18361817 | 18361683 | ID=Msa1238340-mRNA-1:exon:6920;Parent=Msa1238340-mRNA-1 |
| chr8_2 | exon | 18362104 | 18362197 | 18362104 | ID=Msa1238340-mRNA-1:exon:6921;Parent=Msa1238340-mRNA-1 |
| chr8_2 | exon | 18362329 | 18362357 | 18362329 | ID=Msa1238340-mRNA-1:exon:6922;Parent=Msa1238340-mRNA-1 |
| chr8_2 | exon | 18362685 | 18362774 | 18362685 | ID=Msa1238340-mRNA-1:exon:6923;Parent=Msa1238340-mRNA-1 |
| chr8_2 | exon | 18363063 | 18363332 | 18363063 | ID=Msa1238340-mRNA-1:exon:6924;Parent=Msa1238340-mRNA-1 |
| chr8_2 | CDS | 18361683 | 18361817 | 18361683 | ID=Msa1238340-mRNA-1:cds;Parent=Msa1238340-mRNA-1 |
| chr8_2 | CDS | 18362104 | 18362197 | 18362104 | ID=Msa1238340-mRNA-1:cds;Parent=Msa1238340-mRNA-1 |
| chr8_2 | CDS | 18362329 | 18362357 | 18362329 | ID=Msa1238340-mRNA-1:cds;Parent=Msa1238340-mRNA-1 |
| chr8_2 | CDS | 18362685 | 18362774 | 18362685 | ID=Msa1238340-mRNA-1:cds;Parent=Msa1238340-mRNA-1 |
| chr8_2 | CDS | 18363063 | 18363332 | 18363063 | ID=Msa1238340-mRNA-1:cds;Parent=Msa1238340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
