AlfalfaGEDB | Msa1238340

M. sativa cultivar zhongmu-4 / Msa1238340

KEGG: K09377
GO: GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030029 GO:0030036 GO:0044085 GO:0044877 GO:0051015 GO:0051017 GO:0061572 GO:0071840 GO:0097435
PFAM: PF00412.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1238340	KEH18910.1	99.024	205	2	0	1	205	1	205	1.33e-148	421

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1238340	sp\|Q500W4\|PLI2C_ARATH	69.697	198	56	2	2	195	3	200	1.05e-102	298

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1238340	A0A072TZG0	99.024	205	2	0	1	205	1	205	6.34e-149	421

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TFs/TRs:

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Gene ID	Type	Classification
Msa1238340	TF	LIM

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1238340	MtrunA17_Chr8g0349391	99.024	205	2	0	1	205	1	205	1.22e-152	421
Msa1238340	MtrunA17_Chr7g0247111	77.295	207	45	2	1	205	1	207	4.32e-112	318
Msa1238340	MtrunA17_Chr3g0113051	61.497	187	66	2	1	181	1	187	3.31e-83	245
Msa1238340	MtrunA17_Chr8g0386501	54.680	203	86	3	1	202	1	198	4.83e-75	225
Msa1238340	MtrunA17_Chr1g0152431	48.718	195	93	3	1	189	1	194	9.45e-63	193
Msa1238340	MtrunA17_Chr4g0059371	48.045	179	80	2	2	171	3	177	6.27e-57	178

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1238340	AT3G61230.1	69.697	198	56	2	2	195	3	200	1.06e-103	298
Msa1238340	AT1G01780.1	67.500	200	65	0	1	200	1	200	1.87e-101	292
Msa1238340	AT2G45800.1	70.098	204	55	4	1	198	1	204	1.20e-100	291
Msa1238340	AT3G55770.3	67.232	177	54	2	1	173	1	177	1.76e-88	259
Msa1238340	AT3G55770.5	67.232	177	54	2	1	173	1	177	1.76e-88	259
Msa1238340	AT3G55770.2	67.232	177	54	2	1	173	1	177	1.76e-88	259
Msa1238340	AT3G55770.1	67.232	177	54	2	1	173	1	177	1.76e-88	259
Msa1238340	AT2G39900.1	66.292	178	55	2	1	173	1	178	2.46e-87	256
Msa1238340	AT3G55770.7	56.398	211	54	3	1	173	1	211	1.66e-80	240
Msa1238340	AT3G55770.7	42.857	98	54	1	97	194	3	98	2.50e-19	83.2

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Find 35 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCTGCACACAAGAGGAA+TGG	0.618865	8_2:+18363225	Msa1238340:CDS
AACATGGAAGATAGTCTACT+TGG	0.545011	8_2:-18362694	None:intergenic
AACCGTCTATCCACTGGAAA+AGG	0.456725	8_2:+18362753	Msa1238340:CDS
AGACTATCTTCCATGTTCAG+TGG	0.654978	8_2:+18362700	Msa1238340:CDS
AGCAAGTCGCACATTTGTCC+AGG	0.436853	8_2:-18362726	None:intergenic
AGTACATACTCCTCCATGGA+TGG	0.562913	8_2:+18362107	Msa1238340:CDS
ATAGAGAATTCCATCCATGG+AGG	0.764020	8_2:-18362117	None:intergenic
ATTAAACAGGTGACACTGGA+AGG	0.549370	8_2:+18363054	Msa1238340:intron
CAAAATGAACCCTGCAGTAT+AGG	0.377575	8_2:-18363161	None:intergenic
CACACCTAAAGCATGTCTTG+TGG	0.697099	8_2:-18363086	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCAAATGTAGTCATTGCAA+GGG	+	chr8_2:18361785-18361804	Msa1238340:CDS	30.0%
ATGTCATTGGTATCTCATTT+AGG	-	chr8_2:18362066-18362085	None:intergenic	30.0%
GAATTAGCCATATGGAAATT+AGG	+	chr8_2:18362445-18362464	Msa1238340:intron	30.0%
TTCAAATGTAGTCATTGCAA+GGG	+	chr8_2:18361785-18361804	Msa1238340:CDS	30.0%
ATGTCATTGGTATCTCATTT+AGG	-	chr8_2:18362066-18362085	None:intergenic	30.0%
GAATTAGCCATATGGAAATT+AGG	+	chr8_2:18362445-18362464	Msa1238340:intron	30.0%
TGGAACTCTTGATAAATGCA+AGG	+	chr8_2:18361694-18361713	Msa1238340:CDS	35.0%
CTTCAAATGTAGTCATTGCA+AGG	+	chr8_2:18361784-18361803	Msa1238340:CDS	35.0%
TCATTGCAAGGGAAATCTTA+CGG	+	chr8_2:18361796-18361815	Msa1238340:CDS	35.0%
TTTGGTCCCTAATTTCCATA+TGG	-	chr8_2:18362455-18362474	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	18361683	18363332	18361683	ID=Msa1238340;Name=Msa1238340
chr8_2	mRNA	18361683	18363332	18361683	ID=Msa1238340-mRNA-1;Parent=Msa1238340;Name=Msa1238340-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0\|0\|0\|1\|1\|1\|5\|0\|205
chr8_2	exon	18361683	18361817	18361683	ID=Msa1238340-mRNA-1:exon:6920;Parent=Msa1238340-mRNA-1
chr8_2	exon	18362104	18362197	18362104	ID=Msa1238340-mRNA-1:exon:6921;Parent=Msa1238340-mRNA-1
chr8_2	exon	18362329	18362357	18362329	ID=Msa1238340-mRNA-1:exon:6922;Parent=Msa1238340-mRNA-1
chr8_2	exon	18362685	18362774	18362685	ID=Msa1238340-mRNA-1:exon:6923;Parent=Msa1238340-mRNA-1
chr8_2	exon	18363063	18363332	18363063	ID=Msa1238340-mRNA-1:exon:6924;Parent=Msa1238340-mRNA-1
chr8_2	CDS	18361683	18361817	18361683	ID=Msa1238340-mRNA-1:cds;Parent=Msa1238340-mRNA-1
chr8_2	CDS	18362104	18362197	18362104	ID=Msa1238340-mRNA-1:cds;Parent=Msa1238340-mRNA-1
chr8_2	CDS	18362329	18362357	18362329	ID=Msa1238340-mRNA-1:cds;Parent=Msa1238340-mRNA-1
chr8_2	CDS	18362685	18362774	18362685	ID=Msa1238340-mRNA-1:cds;Parent=Msa1238340-mRNA-1
chr8_2	CDS	18363063	18363332	18363063	ID=Msa1238340-mRNA-1:cds;Parent=Msa1238340-mRNA-1

Gene Sequence

>Msa1238340

ATGTCTTTCACTGGAACTCTTGATAAATGCAAGGCTTGTGACAAGACTGTTTATGTTGTTGATTTGTTAACTCTTGAAAATATTCCATACCATAAAAGCTGCTTCAAATGTAGTCATTGCAAGGGAAATCTTACGATGAGTACATACTCCTCCATGGATGGAATTCTCTATTGCAAAACACATTTTGAACAGCTTTTCAAGGAATCTGGCAATTTTAGCAAGAACTTTGCAAAGTCTTCTGACAAAGCAAATGAGCTGAATAGGACACCAAGTAGACTATCTTCCATGTTCAGTGGTACCCTGGACAAATGTGCGACTTGCTCTAAAACCGTCTATCCACTGGAAAAGGTGACACTGGAAGGAGAAATCTACCACAAGACATGCTTTAGGTGTGCTCATGCAGGGTGCCCTCTCACACATTCAAGCTATGCTGCTCTTGATGGTGTCCTATACTGCAGGGTTCATTTTGCACAACTTTTCATGGAGAAAGGTAACTACAGTCATGTACTCAAATCTGCACACAAGAGGAATGGTTCTTCTTCTGAATCAGTTGAAGTTGTTGAAGAGCCTTCACAATCAGCAGAAGCACCTGAAGATCATCCAGAAGAAACCTCTTGA

Protein sequence

>Msa1238340

MSFTGTLDKCKACDKTVYVVDLLTLENIPYHKSCFKCSHCKGNLTMSTYSSMDGILYCKTHFEQLFKESGNFSKNFAKSSDKANELNRTPSRLSSMFSGTLDKCATCSKTVYPLEKVTLEGEIYHKTCFRCAHAGCPLTHSSYAALDGVLYCRVHFAQLFMEKGNYSHVLKSAHKRNGSSSESVEVVEEPSQSAEAPEDHPEETS*