AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1239090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1239090 MtrunA17_Chr8g0360761 64.762 210 20 2 44 253 37 192 1.48e-84 250
Msa1239090 MtrunA17_Chr4g0051261 41.221 262 126 6 5 246 35 288 2.45e-58 187
Msa1239090 MtrunA17_Chr2g0293491 40.458 262 128 6 5 246 35 288 2.94e-57 184
Msa1239090 MtrunA17_Chr4g0002001 43.891 221 98 6 49 245 85 303 1.58e-48 162
Msa1239090 MtrunA17_Chr8g0358921 43.519 216 98 4 53 245 121 335 3.93e-48 162
Msa1239090 MtrunA17_Chr1g0187371 40.909 220 106 5 48 245 91 308 2.33e-44 151
Msa1239090 MtrunA17_Chr4g0030231 34.800 250 140 6 18 248 84 329 5.95e-37 134
Msa1239090 MtrunA17_Chr4g0045841 35.426 223 122 6 48 252 127 345 1.99e-36 132
Msa1239090 MtrunA17_Chr5g0397261 34.510 255 144 6 18 253 85 335 2.27e-36 132
Msa1239090 MtrunA17_Chr4g0057791 38.182 220 111 5 52 246 293 512 1.36e-35 132
Msa1239090 MtrunA17_Chr8g0387401 36.364 220 119 5 48 248 124 341 2.02e-35 130
Msa1239090 MtrunA17_Chr3g0099951 35.321 218 121 4 46 245 81 296 2.10e-35 130
Msa1239090 MtrunA17_Chr7g0248461 35.484 217 119 5 48 245 110 324 2.42e-35 129
Msa1239090 MtrunA17_Chr6g0483151 36.916 214 115 4 50 245 83 294 4.03e-35 129
Msa1239090 MtrunA17_Chr3g0093391 35.349 215 120 2 50 245 108 322 7.97e-34 127
Msa1239090 MtrunA17_Chr3g0093571 35.349 215 120 2 50 245 110 324 1.14e-33 127
Msa1239090 MtrunA17_Chr4g0030151 35.455 220 117 7 53 252 116 330 5.34e-32 120
Msa1239090 MtrunA17_Chr8g0348481 32.719 217 125 5 48 245 109 323 2.49e-31 119
Msa1239090 MtrunA17_Chr8g0378831 35.211 213 116 5 53 245 109 319 2.29e-30 116
Msa1239090 MtrunA17_Chr8g0377071 34.783 230 125 5 42 246 448 677 2.63e-30 119
Msa1239090 MtrunA17_Chr3g0141871 35.023 217 117 5 53 248 109 322 5.00e-30 115
Msa1239090 MtrunA17_Chr3g0122781 33.061 245 124 6 42 246 479 723 7.45e-30 117
Msa1239090 MtrunA17_Chr8g0369451 30.415 217 135 1 46 246 68 284 6.55e-29 113
Msa1239090 MtrunA17_Chr3g0102571 35.789 190 102 3 74 245 179 366 6.81e-29 113
Msa1239090 MtrunA17_Chr3g0102601 34.872 195 123 3 53 245 12 204 1.48e-28 108
Msa1239090 MtrunA17_Chr8g0392811 33.778 225 121 7 53 252 194 415 8.28e-28 111
Msa1239090 MtrunA17_Chr8g0339221 27.799 259 144 5 19 249 45 288 1.73e-27 109
Msa1239090 MtrunA17_Chr4g0061141 32.407 216 122 6 52 246 178 390 8.57e-27 108
Msa1239090 MtrunA17_Chr5g0409421 29.412 221 132 3 46 246 68 284 3.22e-26 105
Msa1239090 MtrunA17_Chr5g0396361 31.651 218 127 4 48 245 209 424 3.64e-26 106
Msa1239090 MtrunA17_Chr6g0453711 31.556 225 118 7 51 248 182 397 1.34e-25 105
Msa1239090 MtrunA17_Chr4g0065851 33.480 227 122 8 48 249 98 320 1.64e-25 104
Msa1239090 MtrunA17_Chr2g0287271 33.480 227 122 8 48 249 98 320 2.77e-25 103
Msa1239090 MtrunA17_Chr7g0218071 33.333 222 111 7 52 245 193 405 6.03e-25 103
Msa1239090 MtrunA17_Chr6g0482681 34.783 230 121 8 48 252 162 387 1.26e-24 102
Msa1239090 MtrunA17_Chr2g0284091 33.645 214 117 7 55 245 113 324 5.17e-24 99.4
Msa1239090 MtrunA17_Chr1g0201571 33.333 216 116 7 52 245 199 408 5.82e-24 100
Msa1239090 MtrunA17_Chr2g0320011 31.982 222 124 8 49 245 153 372 6.47e-24 99.4
Msa1239090 MtrunA17_Chr3g0130781 33.659 205 97 5 81 247 127 330 1.73e-23 98.6
Msa1239090 MtrunA17_Chr3g0131861 31.416 226 109 8 52 245 170 381 4.16e-23 97.8
Msa1239090 MtrunA17_Chr5g0443351 33.913 230 123 8 45 249 92 317 5.18e-23 97.4
Msa1239090 MtrunA17_Chr4g0066691 30.841 214 126 5 52 245 177 388 5.99e-23 97.4
Msa1239090 MtrunA17_Chr8g0359091 34.802 227 119 8 48 249 99 321 6.69e-23 97.4
Msa1239090 MtrunA17_Chr2g0286421 30.841 214 126 5 52 245 175 386 8.20e-23 97.1
Msa1239090 MtrunA17_Chr1g0194201 34.225 187 101 6 79 245 175 359 1.44e-22 95.5
Msa1239090 MtrunA17_Chr6g0486031 39.706 136 78 2 114 245 265 400 1.46e-22 95.5
Msa1239090 MtrunA17_Chr7g0270371 33.333 186 102 5 79 244 175 358 1.48e-22 95.5
Msa1239090 MtrunA17_Chr2g0277011 34.759 187 100 6 79 245 190 374 2.06e-22 95.1
Msa1239090 MtrunA17_Chr1g0193081 33.155 187 103 6 79 245 175 359 6.46e-22 93.6
Msa1239090 MtrunA17_Chr7g0273601 30.374 214 127 6 52 245 180 391 1.81e-21 93.2
Msa1239090 MtrunA17_Chr1g0191221 30.734 218 121 7 52 245 195 406 4.56e-21 92.0
Msa1239090 MtrunA17_Chr3g0096631 32.883 222 121 7 53 249 102 320 6.12e-21 91.7
Msa1239090 MtrunA17_Chr4g0040141 29.148 223 126 5 48 245 198 413 9.73e-21 91.3
Msa1239090 MtrunA17_Chr7g0246591 32.086 187 105 6 79 245 241 425 1.12e-20 90.5
Msa1239090 MtrunA17_Chr8g0385971 31.019 216 115 8 51 240 162 369 1.23e-20 90.5
Msa1239090 MtrunA17_Chr2g0317501 29.187 209 126 4 52 240 207 413 1.48e-20 90.5
Msa1239090 MtrunA17_Chr2g0324461 30.137 219 121 6 52 245 214 425 1.67e-20 90.5
Msa1239090 MtrunA17_Chr8g0350311 32.979 188 104 7 81 248 241 426 2.10e-20 89.7
Msa1239090 MtrunA17_Chr4g0030241 39.200 125 59 2 83 190 7 131 2.12e-20 85.5
Msa1239090 MtrunA17_Chr4g0053821 26.744 258 125 8 29 245 140 374 3.42e-20 88.6
Msa1239090 MtrunA17_Chr8g0390341 38.095 126 77 1 121 245 288 413 3.93e-20 89.0
Msa1239090 MtrunA17_Chr8g0383451 33.766 154 81 4 52 185 71 223 9.51e-20 87.8
Msa1239090 MtrunA17_Chr2g0314321 32.510 243 120 8 48 249 98 337 6.72e-19 85.5
Msa1239090 MtrunA17_Chr4g0053951 24.901 253 136 8 29 245 171 405 1.31e-18 84.3
Msa1239090 MtrunA17_Chr5g0401371 27.000 200 102 5 81 245 210 400 6.88e-18 82.4
Msa1239090 MtrunA17_Chr6g0480541 27.451 204 115 7 73 245 999 1200 1.19e-15 76.3
Msa1239090 MtrunA17_Chr8g0369241 33.333 144 75 5 55 178 217 359 1.82e-14 72.8
Msa1239090 MtrunA17_Chr5g0437131 29.592 196 106 7 81 245 511 705 2.67e-14 72.0
Msa1239090 MtrunA17_Chr3g0129721 29.279 222 107 7 47 246 91 284 7.53e-14 69.7
Msa1239090 MtrunA17_Chr3g0133541 28.251 223 106 7 53 252 384 575 1.04e-13 70.5
Msa1239090 MtrunA17_Chr8g0384301 28.649 185 79 6 83 246 404 556 1.23e-13 70.1
Msa1239090 MtrunA17_Chr8g0392821 33.566 143 64 5 107 242 18 136 3.32e-13 66.2
Msa1239090 MtrunA17_Chr4g0051191 30.387 181 80 7 83 246 267 418 3.44e-13 68.6
Msa1239090 MtrunA17_Chr1g0157131 28.415 183 83 5 84 246 179 333 1.91e-11 63.5
Msa1239090 MtrunA17_Chr7g0276111 28.495 186 85 5 81 246 250 407 2.66e-11 63.2
Msa1239090 MtrunA17_Chr1g0202831 27.072 181 87 4 83 246 516 668 2.91e-11 63.2
Msa1239090 MtrunA17_Chr3g0130151 26.230 183 86 4 83 246 349 501 8.04e-11 62.0
Msa1239090 MtrunA17_Chr8g0386981 26.519 181 88 4 83 246 513 665 8.07e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1239090 AT3G48750.1 39.394 264 132 6 5 248 35 290 2.96e-53 174
Msa1239090 AT2G38620.2 39.382 259 120 8 13 245 56 303 6.07e-50 166
Msa1239090 AT3G54180.1 43.498 223 96 6 49 245 83 301 9.47e-49 163
Msa1239090 AT1G20930.1 40.678 236 114 6 32 245 75 306 1.13e-47 160
Msa1239090 AT1G76540.1 42.273 220 103 5 48 245 87 304 6.48e-47 158
Msa1239090 AT2G38620.4 44.505 182 80 3 83 245 62 241 3.27e-45 152
Msa1239090 AT1G18040.1 37.674 215 112 5 50 245 81 292 1.11e-38 139
Msa1239090 AT1G73690.1 33.462 260 144 6 5 245 42 291 1.37e-36 134
Msa1239090 AT3G59790.1 36.792 212 112 5 53 245 137 345 2.00e-35 130
Msa1239090 AT1G07880.2 34.413 247 139 6 18 245 77 319 2.78e-35 129
Msa1239090 AT4G11330.1 35.455 220 121 5 53 253 120 337 1.59e-34 127
Msa1239090 AT1G66750.1 35.377 212 117 3 52 245 84 293 3.23e-34 126
Msa1239090 AT2G46070.1 36.493 211 115 4 53 245 118 327 3.42e-34 127
Msa1239090 AT4G01370.1 33.603 247 141 6 18 245 87 329 3.51e-34 127
Msa1239090 AT2G46070.3 36.493 211 115 4 53 245 152 361 4.84e-34 127
Msa1239090 AT1G01560.2 35.455 220 121 5 53 253 117 334 6.94e-34 125
Msa1239090 AT2G43790.1 36.239 218 117 6 53 252 140 353 4.59e-32 121
Msa1239090 AT5G63370.2 36.364 220 111 6 53 245 242 459 7.90e-32 122
Msa1239090 AT5G63370.3 36.364 220 111 6 53 245 242 459 7.90e-32 122
Msa1239090 AT5G63370.7 36.364 220 111 6 53 245 376 593 1.09e-31 122
Msa1239090 AT5G63370.8 36.364 220 111 6 53 245 376 593 1.09e-31 122
Msa1239090 AT5G63370.4 36.364 220 111 6 53 245 376 593 1.09e-31 122
Msa1239090 AT5G63370.6 36.364 220 111 6 53 245 376 593 1.09e-31 122
Msa1239090 AT5G63370.1 36.364 220 111 6 53 245 376 593 1.09e-31 122
Msa1239090 AT5G10270.1 33.796 216 122 4 50 245 111 325 9.12e-31 119
Msa1239090 AT3G45640.1 34.685 222 120 7 53 253 115 332 1.77e-30 117
Msa1239090 AT1G10210.2 35.909 220 116 7 47 245 104 319 2.27e-30 116
Msa1239090 AT1G10210.3 35.909 220 116 7 47 245 104 319 2.27e-30 116
Msa1239090 AT1G10210.1 35.909 220 116 7 47 245 104 319 2.27e-30 116
Msa1239090 AT1G59580.2 35.349 215 113 6 53 245 109 319 3.56e-30 116
Msa1239090 AT1G59580.1 35.349 215 113 6 53 245 109 319 3.56e-30 116
Msa1239090 AT4G13020.7 31.624 234 137 2 32 249 61 287 4.45e-30 115
Msa1239090 AT4G13020.8 31.624 234 137 2 32 249 70 296 6.51e-30 115
Msa1239090 AT4G13020.6 31.624 234 137 2 32 249 61 287 6.77e-30 115
Msa1239090 AT5G64960.2 32.093 215 127 2 50 245 58 272 8.63e-30 116
Msa1239090 AT4G13020.4 31.624 234 137 2 32 249 61 287 8.65e-30 115
Msa1239090 AT1G67580.1 34.842 221 119 5 51 246 478 698 9.36e-30 117
Msa1239090 AT1G67580.2 34.842 221 119 5 51 246 478 698 9.36e-30 117
Msa1239090 AT5G64960.1 32.093 215 127 2 50 245 111 325 1.03e-29 116
Msa1239090 AT4G13020.5 31.624 234 137 2 32 249 70 296 1.13e-29 115
Msa1239090 AT4G13020.1 31.624 234 137 2 32 249 61 287 1.17e-29 115
Msa1239090 AT2G46070.2 34.826 201 112 4 53 235 118 317 1.18e-29 114
Msa1239090 AT4G13020.2 31.624 234 137 2 32 249 69 295 1.25e-29 115
Msa1239090 AT4G13020.3 31.624 234 137 2 32 249 69 295 1.26e-29 115
Msa1239090 AT4G19110.3 30.769 221 129 3 46 246 12 228 1.42e-29 115
Msa1239090 AT4G19110.2 30.213 235 133 4 32 246 61 284 1.43e-29 115
Msa1239090 AT4G19110.1 30.769 221 129 3 46 246 68 284 1.44e-29 115
Msa1239090 AT1G01560.3 34.928 209 113 6 53 240 117 323 3.66e-29 112
Msa1239090 AT2G18170.1 33.333 213 120 4 53 245 109 319 1.35e-28 111
Msa1239090 AT4G36450.1 31.356 236 138 6 31 245 84 316 9.60e-28 109
Msa1239090 AT2G01450.3 35.652 230 119 9 48 252 89 314 1.14e-27 110
Msa1239090 AT2G01450.1 35.652 230 119 9 48 252 89 314 1.14e-27 110
Msa1239090 AT2G01450.2 35.652 230 119 9 48 252 89 314 1.14e-27 110
Msa1239090 AT2G01450.4 35.652 230 119 9 48 252 89 314 1.14e-27 110
Msa1239090 AT5G45430.1 30.672 238 128 8 32 246 61 284 4.63e-27 109
Msa1239090 AT5G45430.2 30.672 238 128 8 32 246 61 284 4.80e-27 108
Msa1239090 AT2G38620.3 36.649 191 86 7 13 177 56 237 7.37e-27 105
Msa1239090 AT2G38620.1 36.649 191 86 7 13 177 56 237 7.37e-27 105
Msa1239090 AT1G73670.1 33.632 223 120 7 53 250 167 386 8.90e-27 108
Msa1239090 AT5G39420.1 31.674 221 115 6 52 245 178 389 1.33e-25 105
Msa1239090 AT5G19010.1 33.784 222 119 7 53 249 102 320 1.48e-25 105
Msa1239090 AT5G63370.9 36.994 173 89 4 53 207 242 412 3.28e-25 103
Msa1239090 AT5G63370.5 36.994 173 89 4 53 207 376 546 4.35e-25 103
Msa1239090 AT5G63370.10 36.994 173 89 4 53 207 376 546 4.35e-25 103
Msa1239090 AT5G63610.1 35.610 205 93 5 81 247 132 335 5.73e-25 103
Msa1239090 AT3G01085.3 30.342 234 137 5 32 245 173 400 1.00e-24 103
Msa1239090 AT3G01085.1 30.342 234 137 5 32 245 173 400 1.13e-24 102
Msa1239090 AT3G01085.2 30.342 234 137 5 32 245 173 400 1.13e-24 102
Msa1239090 AT1G03740.1 31.050 219 121 5 52 246 286 498 8.33e-24 100
Msa1239090 AT5G44290.6 32.727 220 116 6 52 246 210 422 8.74e-24 100
Msa1239090 AT4G18710.1 31.532 222 125 8 49 245 105 324 9.55e-24 99.0
Msa1239090 AT1G03740.2 31.050 219 121 5 52 246 286 498 9.59e-24 100
Msa1239090 AT5G44290.7 32.727 220 116 6 52 246 210 422 1.01e-23 99.8
Msa1239090 AT5G44290.2 32.727 220 116 6 52 246 210 422 1.21e-23 100
Msa1239090 AT5G44290.5 32.727 220 116 6 52 246 210 422 1.21e-23 100
Msa1239090 AT5G44290.4 32.727 220 116 6 52 246 210 422 1.21e-23 100
Msa1239090 AT5G44290.1 32.727 220 116 6 52 246 210 422 1.21e-23 100
Msa1239090 AT5G44290.3 32.727 220 116 6 52 246 210 422 1.21e-23 100
Msa1239090 AT3G18040.1 35.398 226 116 8 53 252 100 321 1.69e-23 99.4
Msa1239090 AT3G18040.5 35.398 226 116 8 53 252 95 316 2.11e-23 99.0
Msa1239090 AT3G18040.2 35.398 226 116 8 53 252 12 233 2.13e-23 98.2
Msa1239090 AT3G18040.3 35.398 226 116 8 53 252 209 430 2.34e-23 99.0
Msa1239090 AT2G30980.1 32.287 223 122 7 49 245 137 356 2.73e-23 97.8
Msa1239090 AT1G57870.3 34.759 187 100 6 79 245 182 366 2.74e-23 98.2
Msa1239090 AT3G18040.4 35.398 226 116 8 53 252 209 430 2.91e-23 99.0
Msa1239090 AT1G57870.1 34.759 187 100 6 79 245 182 366 3.00e-23 97.8
Msa1239090 AT1G57870.4 34.759 187 100 6 79 245 182 366 3.00e-23 97.8
Msa1239090 AT1G57870.2 34.759 187 100 6 79 245 182 366 3.00e-23 97.8
Msa1239090 AT3G14720.2 35.965 228 115 9 48 249 98 320 3.69e-23 97.8
Msa1239090 AT3G14720.3 35.965 228 115 9 48 249 98 320 3.69e-23 97.8
Msa1239090 AT1G53050.2 31.944 216 121 5 52 245 207 418 5.11e-23 98.2
Msa1239090 AT1G53050.1 31.944 216 121 5 52 245 207 418 5.11e-23 98.2
Msa1239090 AT2G42880.2 34.498 229 117 9 48 249 98 320 8.85e-23 97.1
Msa1239090 AT1G06390.2 31.390 223 124 7 49 245 135 354 9.25e-23 96.3
Msa1239090 AT1G06390.1 31.390 223 124 7 49 245 135 354 9.25e-23 96.3
Msa1239090 AT2G42880.1 34.498 229 117 9 48 249 98 320 1.00e-22 97.1
Msa1239090 AT1G18150.3 33.184 223 121 7 53 250 181 400 1.02e-22 97.1
Msa1239090 AT1G18150.2 33.184 223 121 7 53 250 181 400 1.02e-22 97.1
Msa1239090 AT1G18150.1 33.184 223 121 7 53 250 181 400 1.02e-22 97.1
Msa1239090 AT3G14720.1 35.652 230 113 9 48 249 98 320 2.17e-22 96.3
Msa1239090 AT1G74330.1 30.698 215 125 4 53 245 195 407 2.20e-22 96.3
Msa1239090 AT1G74330.3 30.698 215 125 4 53 245 195 407 2.23e-22 96.3
Msa1239090 AT3G05840.2 32.620 187 104 5 79 245 173 357 2.34e-22 95.1
Msa1239090 AT3G05840.1 32.620 187 104 5 79 245 173 357 2.34e-22 95.1
Msa1239090 AT1G74330.2 30.698 215 125 4 53 245 195 407 2.40e-22 96.3
Msa1239090 AT1G54610.1 28.169 213 133 3 52 245 191 402 2.61e-22 95.9
Msa1239090 AT1G54610.3 28.169 213 133 3 52 245 191 402 2.61e-22 95.9
Msa1239090 AT1G54610.2 28.169 213 133 3 52 245 191 402 2.61e-22 95.9
Msa1239090 AT5G14640.1 34.225 187 101 6 79 245 174 358 3.23e-22 94.7
Msa1239090 AT5G14640.2 34.225 187 101 6 79 245 174 358 3.23e-22 94.7
Msa1239090 AT1G09840.11 33.514 185 101 5 79 243 56 238 4.47e-22 92.8
Msa1239090 AT5G26751.1 32.620 187 104 5 79 245 169 353 4.81e-22 94.4
Msa1239090 AT1G18670.3 30.876 217 125 5 52 245 204 418 5.90e-22 95.1
Msa1239090 AT1G18670.2 35.526 152 78 3 52 183 204 355 6.92e-22 94.7
Msa1239090 AT1G18670.1 30.876 217 125 5 52 245 204 418 7.88e-22 94.7
Msa1239090 AT1G09840.3 34.054 185 100 6 79 243 183 365 2.00e-21 92.8
Msa1239090 AT1G09840.7 34.054 185 100 6 79 243 183 365 2.00e-21 92.8
Msa1239090 AT1G09840.10 34.054 185 100 6 79 243 183 365 2.00e-21 92.8
Msa1239090 AT1G09840.6 34.054 185 100 6 79 243 183 365 2.00e-21 92.8
Msa1239090 AT1G09840.4 34.054 185 100 6 79 243 183 365 2.00e-21 92.8
Msa1239090 AT1G09840.1 34.054 185 100 6 79 243 183 365 2.00e-21 92.8
Msa1239090 AT1G09840.9 34.054 185 100 6 79 243 183 365 2.00e-21 92.8
Msa1239090 AT1G09840.5 34.054 185 100 6 79 243 183 365 2.00e-21 92.8
Msa1239090 AT1G09840.8 34.054 185 100 6 79 243 183 365 2.00e-21 92.8
Msa1239090 AT1G09840.2 34.054 185 100 6 79 243 183 365 2.00e-21 92.8
Msa1239090 AT1G71530.3 31.651 218 111 6 52 241 220 427 2.74e-21 92.4
Msa1239090 AT1G71530.2 31.081 222 115 6 52 245 220 431 3.32e-21 92.4
Msa1239090 AT1G71530.1 31.081 222 115 6 52 245 220 431 4.56e-21 92.4
Msa1239090 AT2G23080.1 28.235 255 125 8 29 245 85 319 4.61e-21 90.9
Msa1239090 AT4G00720.1 33.514 185 101 7 81 245 240 422 5.64e-21 91.7
Msa1239090 AT1G53510.1 34.361 227 120 8 48 249 98 320 6.54e-21 92.0
Msa1239090 AT4G10010.1 30.769 221 117 6 52 245 49 260 6.83e-21 91.7
Msa1239090 AT5G67380.2 25.448 279 143 9 9 245 107 362 1.04e-20 90.5
Msa1239090 AT4G10010.2 30.769 221 117 6 52 245 229 440 1.56e-20 90.9
Msa1239090 AT1G33770.1 35.762 151 78 2 52 183 214 364 3.93e-20 89.7
Msa1239090 AT1G07880.1 32.727 165 91 4 18 165 77 238 4.24e-20 86.7
Msa1239090 AT5G67380.1 26.744 258 125 8 29 245 161 395 4.70e-20 89.0
Msa1239090 AT3G05050.3 30.000 170 100 1 52 202 211 380 5.13e-20 89.4
Msa1239090 AT3G05050.2 30.000 170 100 1 52 202 211 380 5.13e-20 89.4
Msa1239090 AT3G05050.1 30.000 170 100 1 52 202 211 380 5.13e-20 89.4
Msa1239090 AT2G23070.1 26.984 252 132 8 29 245 183 417 6.61e-20 88.6
Msa1239090 AT3G61160.4 30.481 187 108 6 79 245 202 386 7.66e-20 88.2
Msa1239090 AT3G61160.1 31.016 187 107 7 79 245 202 386 8.47e-20 88.2
Msa1239090 AT5G50860.2 30.455 220 119 8 52 245 187 398 8.59e-20 88.6
Msa1239090 AT3G61160.2 30.481 187 108 6 79 245 209 393 9.65e-20 88.2
Msa1239090 AT3G50000.1 26.744 258 125 8 29 245 155 389 1.08e-19 87.8
Msa1239090 AT5G50860.1 30.455 220 119 8 52 245 187 398 1.23e-19 88.2
Msa1239090 AT1G09600.1 28.972 214 130 5 52 245 236 447 3.75e-19 87.0
Msa1239090 AT4G18710.2 32.000 175 95 6 49 199 99 273 5.05e-19 84.3
Msa1239090 AT4G28980.3 37.302 126 78 1 121 245 293 418 1.14e-18 85.1
Msa1239090 AT4G28980.1 37.302 126 78 1 121 245 293 418 1.14e-18 85.1
Msa1239090 AT4G28980.2 37.302 126 78 1 121 245 293 418 1.14e-18 85.1
Msa1239090 AT4G22940.1 29.101 189 106 6 81 246 206 389 2.64e-18 84.0
Msa1239090 AT4G22940.2 29.101 189 106 6 81 246 206 389 3.54e-18 84.0
Msa1239090 AT3G17750.1 29.412 204 111 8 73 245 928 1129 1.18e-17 82.8
Msa1239090 AT3G61160.5 30.508 177 99 7 81 236 204 377 2.90e-17 80.5
Msa1239090 AT1G01560.4 35.385 130 66 3 53 165 117 245 3.95e-17 79.0
Msa1239090 AT1G01560.1 35.385 130 66 3 53 165 117 245 3.95e-17 79.0
Msa1239090 AT3G04530.1 29.487 234 110 8 32 245 71 269 7.95e-17 78.2
Msa1239090 AT1G57700.1 28.182 220 136 3 46 245 213 430 1.05e-16 79.7
Msa1239090 AT2G23080.2 30.409 171 90 5 29 179 85 246 1.16e-15 75.5
Msa1239090 AT5G35980.1 35.664 143 72 5 55 178 200 341 1.61e-15 76.3
Msa1239090 AT5G35980.2 35.664 143 72 5 55 178 200 341 1.98e-15 75.9
Msa1239090 AT5G35980.3 35.664 143 72 5 55 178 165 306 2.02e-15 75.9
Msa1239090 AT1G73460.2 27.451 204 115 7 73 245 959 1160 4.16e-15 75.1
Msa1239090 AT1G73460.1 27.451 204 115 7 73 245 959 1160 4.16e-15 75.1
Msa1239090 AT1G73450.1 27.451 204 115 7 73 245 942 1143 4.96e-15 75.1
Msa1239090 AT1G08650.1 28.962 183 83 5 83 246 120 274 1.65e-14 72.0
Msa1239090 AT1G71530.4 30.882 136 71 2 52 166 220 353 3.42e-14 71.6
Msa1239090 AT1G53570.5 29.341 167 81 3 83 249 319 448 3.46e-14 72.0
Msa1239090 AT2G40120.1 29.064 203 112 6 81 252 369 570 7.54e-14 71.2
Msa1239090 AT3G61160.3 31.250 128 69 4 81 189 204 331 1.20e-13 70.1
Msa1239090 AT3G61160.6 31.250 128 69 4 81 189 211 338 1.38e-13 70.1
Msa1239090 AT1G53570.7 27.174 184 89 4 83 249 319 474 1.07e-12 67.8
Msa1239090 AT1G53570.6 27.174 184 89 4 83 249 319 474 1.09e-12 67.8
Msa1239090 AT3G45240.3 23.810 210 115 4 51 245 187 366 1.56e-12 67.0
Msa1239090 AT1G53570.1 27.174 184 89 4 83 249 319 474 1.84e-12 67.0
Msa1239090 AT1G53570.4 28.261 184 87 4 83 249 319 474 1.87e-12 67.0
Msa1239090 AT1G53570.2 27.174 184 89 4 83 249 319 474 1.90e-12 67.0
Msa1239090 AT1G53570.3 27.174 184 89 4 83 249 319 474 1.90e-12 67.0
Msa1239090 AT5G24430.1 27.059 255 117 10 20 246 193 406 4.17e-12 65.9
Msa1239090 AT3G45240.2 23.474 213 115 4 51 245 187 369 9.61e-12 64.7
Msa1239090 AT3G45240.1 23.474 213 115 4 51 245 187 369 9.61e-12 64.7
Msa1239090 AT5G39440.1 25.688 218 112 7 46 245 85 270 2.34e-11 63.5

Find 43 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGCTGAAATCCTACTATT+TGG 0.136428 8_2:+20221563 None:intergenic
ATATATTGGCTAAGATATTT+TGG 0.191221 8_2:-20222113 Msa1239090:intron
TGCAGTTGATATCTGGTCTA+TGG 0.259046 8_2:-20222196 Msa1239090:CDS
ACTGAAGCCAGAATATTATT+AGG 0.269823 8_2:+20222433 None:intergenic
ATCAACTGCAGTTGAGTAAT+TGG 0.289792 8_2:+20222209 None:intergenic
ATGAATACCTTTGGCACAAT+TGG 0.321974 8_2:+20221929 None:intergenic
TCTGAAACCTAATAATATTC+TGG 0.322462 8_2:-20222440 Msa1239090:CDS
TAATGATGAACCGCATATAT+TGG 0.364622 8_2:-20222127 Msa1239090:CDS
AGATGGTCTTGATCTTCTTT+CGG 0.382199 8_2:-20221795 Msa1239090:intron
ACTCAACTGCAGTTGATATC+TGG 0.396574 8_2:-20222203 Msa1239090:CDS
CAGCTGAAATCCTACTATTT+GGG 0.399231 8_2:+20221564 None:intergenic
AGACCATCTGGTTCGAGCTC+AGG 0.408839 8_2:+20221809 None:intergenic
GCATATTTGCTGAGATGCTT+AGG 0.419785 8_2:-20222170 Msa1239090:CDS
TTTGCCTGTGCCCAAATAGT+AGG 0.425991 8_2:-20221574 Msa1239090:CDS
GTGGTTAAAATTCGAAGATA+TGG 0.441943 8_2:+20221524 None:intergenic
GTAGAACCCATCAAAAGTTC+AGG 0.451436 8_2:+20222231 None:intergenic
TTTCTGCGTGAAGCTCTCTC+TGG 0.452816 8_2:-20222502 Msa1239090:CDS
CCAGGCAAGGTTTCTTCAGT+TGG 0.471842 8_2:+20221992 None:intergenic
GACCATCTGGTTCGAGCTCA+GGG 0.473592 8_2:+20221810 None:intergenic
AATACCTTTGGCACAATTGG+AGG 0.486665 8_2:+20221932 None:intergenic
GAAAGAAGATCAAGACCATC+TGG 0.494875 8_2:+20221797 None:intergenic
AGTTCAGGTGCTTTATAGCA+AGG 0.509440 8_2:+20222246 None:intergenic
GCAGACAGTGATGGAAACTA+AGG 0.513905 8_2:-20222891 Msa1239090:intron
AGGAGCTTCATCAATCATCA+TGG 0.514486 8_2:+20221501 None:intergenic
GCGTGAAGCTCTCTCTGGAT+TGG 0.519222 8_2:-20222497 Msa1239090:CDS
GCAGTTGATATCTGGTCTAT+GGG 0.534989 8_2:-20222195 Msa1239090:CDS
AAATCCTACTATTTGGGCAC+AGG 0.550994 8_2:+20221570 None:intergenic
CCAACTGAAGAAACCTTGCC+TGG 0.557241 8_2:-20221992 Msa1239090:CDS
CAACCCTCCAATTGTGCCAA+AGG 0.567503 8_2:-20221936 Msa1239090:intron
AGGCTCGAACCTCTGTTCGT+TGG 0.569118 8_2:-20222150 Msa1239090:CDS
ATTCCGATTGCAGACAGTGA+TGG 0.571694 8_2:-20222900 Msa1239090:intron
TGATAACTGCAGAAGGTGGA+AGG 0.590352 8_2:-20223274 Msa1239090:CDS
TTCCCTGAGCTCGAACCAGA+TGG 0.598920 8_2:-20221812 Msa1239090:CDS
ATACCTTTGGCACAATTGGA+GGG 0.599258 8_2:+20221933 None:intergenic
TATAGAAGACACACCAGGCA+AGG 0.601290 8_2:+20221979 None:intergenic
TTTAGGCTGATAACTGCAGA+AGG 0.608512 8_2:-20223281 Msa1239090:CDS
GGAGCTTCATCAATCATCAT+GGG 0.611673 8_2:+20221502 None:intergenic
AGGCTGATAACTGCAGAAGG+TGG 0.619928 8_2:-20223278 Msa1239090:CDS
TCATCATTACCAACGAACAG+AGG 0.662248 8_2:+20222141 None:intergenic
CATATTCGCAAAATTCTACA+CGG 0.662906 8_2:-20222466 Msa1239090:CDS
AATATCTTAGCCAATATATG+CGG 0.678526 8_2:+20222117 None:intergenic
GCTTCATCAATCATCATGGG+TGG 0.679817 8_2:+20221505 None:intergenic
TTGCATATAGAAGACACACC+AGG 0.687587 8_2:+20221974 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATAACTTCAATTTTTTT+GGG + chr8_2:20222700-20222719 None:intergenic 10.0%
!!! ATTAATAACTTCAATTTTTT+TGG + chr8_2:20222701-20222720 None:intergenic 10.0%
!! TAATATTGCTTATTTATAAA+AGG + chr8_2:20223134-20223153 None:intergenic 10.0%
!!! TTAATAACTTCAATTTTTTT+GGG + chr8_2:20222700-20222719 None:intergenic 10.0%
!!! ATTAATAACTTCAATTTTTT+TGG + chr8_2:20222701-20222720 None:intergenic 10.0%
!! TAATATTGCTTATTTATAAA+AGG + chr8_2:20223134-20223153 None:intergenic 10.0%
!! ATTTATTCATTAATAGAGTA+CGG + chr8_2:20222671-20222690 None:intergenic 15.0%
!!! ATTTATTTTCAATTTTCAGA+TGG - chr8_2:20222731-20222750 Msa1239090:intron 15.0%
!!! TTTATTTTCAATTTTCAGAT+GGG - chr8_2:20222732-20222751 Msa1239090:intron 15.0%
!! AGAAATCATAAAAATAGTTA+TGG + chr8_2:20222934-20222953 None:intergenic 15.0%
!! ATTTATTCATTAATAGAGTA+CGG + chr8_2:20222671-20222690 None:intergenic 15.0%
!!! ATTTATTTTCAATTTTCAGA+TGG - chr8_2:20222731-20222750 Msa1239090:intron 15.0%
!!! TTTATTTTCAATTTTCAGAT+GGG - chr8_2:20222732-20222751 Msa1239090:intron 15.0%
!! AGAAATCATAAAAATAGTTA+TGG + chr8_2:20222934-20222953 None:intergenic 15.0%
!!! ATAGCACATATAAAGATTTT+AGG - chr8_2:20221707-20221726 Msa1239090:intron 20.0%
!! AATAGAAACGCAATAAATTA+TGG + chr8_2:20222320-20222339 None:intergenic 20.0%
!! TTATATATTAGATGCAAACA+AGG - chr8_2:20222439-20222458 Msa1239090:CDS 20.0%
!!! ATATATTGGCTAAGATATTT+TGG - chr8_2:20222892-20222911 Msa1239090:intron 20.0%
!! TGCTTATTTATAAAAGGTAA+TGG + chr8_2:20223128-20223147 None:intergenic 20.0%
!!! CAATATTATATGCAAACTTT+TGG - chr8_2:20223146-20223165 Msa1239090:intron 20.0%
!! AATTAATTCTCAAAGATATG+AGG + chr8_2:20223247-20223266 None:intergenic 20.0%
!! ATCTAGTGAATGTTTATTAA+TGG - chr8_2:20223380-20223399 Msa1239090:intron 20.0%
!!! ATAGCACATATAAAGATTTT+AGG - chr8_2:20221707-20221726 Msa1239090:intron 20.0%
!! AATAGAAACGCAATAAATTA+TGG + chr8_2:20222320-20222339 None:intergenic 20.0%
!! TTATATATTAGATGCAAACA+AGG - chr8_2:20222439-20222458 Msa1239090:CDS 20.0%
!!! ATATATTGGCTAAGATATTT+TGG - chr8_2:20222892-20222911 Msa1239090:intron 20.0%
!! TGCTTATTTATAAAAGGTAA+TGG + chr8_2:20223128-20223147 None:intergenic 20.0%
!!! CAATATTATATGCAAACTTT+TGG - chr8_2:20223146-20223165 Msa1239090:intron 20.0%
!! AATTAATTCTCAAAGATATG+AGG + chr8_2:20223247-20223266 None:intergenic 20.0%
!! ATCTAGTGAATGTTTATTAA+TGG - chr8_2:20223380-20223399 Msa1239090:intron 20.0%
! AATTCCTGAATGATGAAATT+TGG + chr8_2:20221543-20221562 None:intergenic 25.0%
! ATAACAGAGATTAAGTCTAT+AGG + chr8_2:20221608-20221627 None:intergenic 25.0%
! CAAAATCAATAAATGTGACA+AGG + chr8_2:20221995-20222014 None:intergenic 25.0%
!! TTTGGAATGTTTAAAAACTC+CGG + chr8_2:20222199-20222218 None:intergenic 25.0%
!! AGTTTTTAAACATTCCAAAC+TGG - chr8_2:20222200-20222219 Msa1239090:CDS 25.0%
!!! TATCTTTGTTTTCAACATCA+TGG - chr8_2:20222292-20222311 Msa1239090:intron 25.0%
! ATATCTTATAGTGCAAGAAA+AGG - chr8_2:20222342-20222361 Msa1239090:intron 25.0%
!! TCTGAAACCTAATAATATTC+TGG - chr8_2:20222565-20222584 Msa1239090:intron 25.0%
! AATATCTTAGCCAATATATG+CGG + chr8_2:20222891-20222910 None:intergenic 25.0%
!!! TTTTATATGTAAAGCTTGCT+CGG - chr8_2:20222986-20223005 Msa1239090:intron 25.0%
!! TTCAATTTGCTTAAAATAGC+TGG + chr8_2:20223334-20223353 None:intergenic 25.0%
! AATTCCTGAATGATGAAATT+TGG + chr8_2:20221543-20221562 None:intergenic 25.0%
! ATAACAGAGATTAAGTCTAT+AGG + chr8_2:20221608-20221627 None:intergenic 25.0%
! CAAAATCAATAAATGTGACA+AGG + chr8_2:20221995-20222014 None:intergenic 25.0%
!! TTTGGAATGTTTAAAAACTC+CGG + chr8_2:20222199-20222218 None:intergenic 25.0%
!! AGTTTTTAAACATTCCAAAC+TGG - chr8_2:20222200-20222219 Msa1239090:CDS 25.0%
!!! TATCTTTGTTTTCAACATCA+TGG - chr8_2:20222292-20222311 Msa1239090:intron 25.0%
! ATATCTTATAGTGCAAGAAA+AGG - chr8_2:20222342-20222361 Msa1239090:intron 25.0%
!! TCTGAAACCTAATAATATTC+TGG - chr8_2:20222565-20222584 Msa1239090:intron 25.0%
! AATATCTTAGCCAATATATG+CGG + chr8_2:20222891-20222910 None:intergenic 25.0%
!!! TTTTATATGTAAAGCTTGCT+CGG - chr8_2:20222986-20223005 Msa1239090:intron 25.0%
!! TTCAATTTGCTTAAAATAGC+TGG + chr8_2:20223334-20223353 None:intergenic 25.0%
AGTTCCAAATTTCATCATTC+AGG - chr8_2:20221536-20221555 Msa1239090:CDS 30.0%
AAGATTGACACGACAATATT+GGG + chr8_2:20221895-20221914 None:intergenic 30.0%
AAAGATTGACACGACAATAT+TGG + chr8_2:20221896-20221915 None:intergenic 30.0%
AATGTTTAAAAACTCCGGAT+CGG + chr8_2:20222194-20222213 None:intergenic 30.0%
!!! TGACTTACTTTTTTCCAGTT+TGG + chr8_2:20222217-20222236 None:intergenic 30.0%
CATATTCGCAAAATTCTACA+CGG - chr8_2:20222539-20222558 Msa1239090:intron 30.0%
ACTGAAGCCAGAATATTATT+AGG + chr8_2:20222575-20222594 None:intergenic 30.0%
TAATGATGAACCGCATATAT+TGG - chr8_2:20222878-20222897 Msa1239090:CDS 30.0%
AAGTAGAACATGAATACCTT+TGG + chr8_2:20223088-20223107 None:intergenic 30.0%
! TGCAAACTTTTGGATTTTGT+AGG - chr8_2:20223156-20223175 Msa1239090:intron 30.0%
ATAGTTAGTTAACTCTTCCA+TGG - chr8_2:20223357-20223376 Msa1239090:intron 30.0%
ATAAACATTCACTAGATCCA+TGG + chr8_2:20223377-20223396 None:intergenic 30.0%
GTGGTTAAAATTCGAAGATA+TGG + chr8_2:20223484-20223503 None:intergenic 30.0%
AGTTCCAAATTTCATCATTC+AGG - chr8_2:20221536-20221555 Msa1239090:CDS 30.0%
AAGATTGACACGACAATATT+GGG + chr8_2:20221895-20221914 None:intergenic 30.0%
AAAGATTGACACGACAATAT+TGG + chr8_2:20221896-20221915 None:intergenic 30.0%
AATGTTTAAAAACTCCGGAT+CGG + chr8_2:20222194-20222213 None:intergenic 30.0%
!!! TGACTTACTTTTTTCCAGTT+TGG + chr8_2:20222217-20222236 None:intergenic 30.0%
CATATTCGCAAAATTCTACA+CGG - chr8_2:20222539-20222558 Msa1239090:intron 30.0%
ACTGAAGCCAGAATATTATT+AGG + chr8_2:20222575-20222594 None:intergenic 30.0%
TAATGATGAACCGCATATAT+TGG - chr8_2:20222878-20222897 Msa1239090:CDS 30.0%
AAGTAGAACATGAATACCTT+TGG + chr8_2:20223088-20223107 None:intergenic 30.0%
! TGCAAACTTTTGGATTTTGT+AGG - chr8_2:20223156-20223175 Msa1239090:intron 30.0%
ATAGTTAGTTAACTCTTCCA+TGG - chr8_2:20223357-20223376 Msa1239090:intron 30.0%
ATAAACATTCACTAGATCCA+TGG + chr8_2:20223377-20223396 None:intergenic 30.0%
GTGGTTAAAATTCGAAGATA+TGG + chr8_2:20223484-20223503 None:intergenic 30.0%
!!! GTTTTTCTGGTTTTCTGGAA+TGG + chr8_2:20221815-20221834 None:intergenic 35.0%
!!! CCATTGTTTTTCTGGTTTTC+TGG + chr8_2:20221820-20221839 None:intergenic 35.0%
CCAGAAAACCAGAAAAACAA+TGG - chr8_2:20221817-20221836 Msa1239090:CDS 35.0%
!! GTGGAAATCCATTGTTTTTC+TGG + chr8_2:20221828-20221847 None:intergenic 35.0%
AGATTGACACGACAATATTG+GGG + chr8_2:20221894-20221913 None:intergenic 35.0%
AGAGATGAAGGAAGAAAAGA+AGG + chr8_2:20221921-20221940 None:intergenic 35.0%
CTGTAACAGAAAAGAGATGA+AGG + chr8_2:20221933-20221952 None:intergenic 35.0%
TAAAAAATACCTCACCGATC+CGG - chr8_2:20222177-20222196 Msa1239090:CDS 35.0%
! CGTGTAGAATTTTGCGAATA+TGG + chr8_2:20222541-20222560 None:intergenic 35.0%
! TCTGGCTTCAGTTGAAAAAT+TGG - chr8_2:20222583-20222602 Msa1239090:intron 35.0%
TTAATAGAGTACGGTGAAAG+AGG + chr8_2:20222662-20222681 None:intergenic 35.0%
!! TAAAGCACCTGAACTTTTGA+TGG - chr8_2:20222767-20222786 Msa1239090:intron 35.0%
!! AAAGCACCTGAACTTTTGAT+GGG - chr8_2:20222768-20222787 Msa1239090:intron 35.0%
ATCAACTGCAGTTGAGTAAT+TGG + chr8_2:20222799-20222818 None:intergenic 35.0%
ATGAATACCTTTGGCACAAT+TGG + chr8_2:20223079-20223098 None:intergenic 35.0%
! AGATGGTCTTGATCTTCTTT+CGG - chr8_2:20223210-20223229 Msa1239090:intron 35.0%
! TAATGGCAAGTGTTTTGTGT+TGG - chr8_2:20223397-20223416 Msa1239090:intron 35.0%
CAGCTGAAATCCTACTATTT+GGG + chr8_2:20223444-20223463 None:intergenic 35.0%
TCAGCTGAAATCCTACTATT+TGG + chr8_2:20223445-20223464 None:intergenic 35.0%
!!! GTTTTTCTGGTTTTCTGGAA+TGG + chr8_2:20221815-20221834 None:intergenic 35.0%
!!! CCATTGTTTTTCTGGTTTTC+TGG + chr8_2:20221820-20221839 None:intergenic 35.0%
CCAGAAAACCAGAAAAACAA+TGG - chr8_2:20221817-20221836 Msa1239090:CDS 35.0%
!! GTGGAAATCCATTGTTTTTC+TGG + chr8_2:20221828-20221847 None:intergenic 35.0%
AGATTGACACGACAATATTG+GGG + chr8_2:20221894-20221913 None:intergenic 35.0%
AGAGATGAAGGAAGAAAAGA+AGG + chr8_2:20221921-20221940 None:intergenic 35.0%
CTGTAACAGAAAAGAGATGA+AGG + chr8_2:20221933-20221952 None:intergenic 35.0%
TAAAAAATACCTCACCGATC+CGG - chr8_2:20222177-20222196 Msa1239090:CDS 35.0%
! CGTGTAGAATTTTGCGAATA+TGG + chr8_2:20222541-20222560 None:intergenic 35.0%
! TCTGGCTTCAGTTGAAAAAT+TGG - chr8_2:20222583-20222602 Msa1239090:intron 35.0%
TTAATAGAGTACGGTGAAAG+AGG + chr8_2:20222662-20222681 None:intergenic 35.0%
!! TAAAGCACCTGAACTTTTGA+TGG - chr8_2:20222767-20222786 Msa1239090:intron 35.0%
!! AAAGCACCTGAACTTTTGAT+GGG - chr8_2:20222768-20222787 Msa1239090:intron 35.0%
ATCAACTGCAGTTGAGTAAT+TGG + chr8_2:20222799-20222818 None:intergenic 35.0%
ATGAATACCTTTGGCACAAT+TGG + chr8_2:20223079-20223098 None:intergenic 35.0%
! AGATGGTCTTGATCTTCTTT+CGG - chr8_2:20223210-20223229 Msa1239090:intron 35.0%
! TAATGGCAAGTGTTTTGTGT+TGG - chr8_2:20223397-20223416 Msa1239090:intron 35.0%
CAGCTGAAATCCTACTATTT+GGG + chr8_2:20223444-20223463 None:intergenic 35.0%
TCAGCTGAAATCCTACTATT+TGG + chr8_2:20223445-20223464 None:intergenic 35.0%
TTTAGGCTGATAACTGCAGA+AGG - chr8_2:20221724-20221743 Msa1239090:intron 40.0%
ACGTCCTCTTCGCTAAAAAT+CGG + chr8_2:20221775-20221794 None:intergenic 40.0%
! ACGCGATTTAAGATACTGTG+TGG + chr8_2:20221847-20221866 None:intergenic 40.0%
TTTCCATCACTGTCTGCAAT+CGG + chr8_2:20222111-20222130 None:intergenic 40.0%
GAAAAATCTGCAAGGACAAG+AGG + chr8_2:20222487-20222506 None:intergenic 40.0%
TTCACGCAGAAAAATCTGCA+AGG + chr8_2:20222495-20222514 None:intergenic 40.0%
GAAGCTATCTGACTTTAGTG+CGG - chr8_2:20222619-20222638 Msa1239090:intron 40.0%
AGTTCAGGTGCTTTATAGCA+AGG + chr8_2:20222762-20222781 None:intergenic 40.0%
GTAGAACCCATCAAAAGTTC+AGG + chr8_2:20222777-20222796 None:intergenic 40.0%
! ACTCAACTGCAGTTGATATC+TGG - chr8_2:20222802-20222821 Msa1239090:CDS 40.0%
! TGCAGTTGATATCTGGTCTA+TGG - chr8_2:20222809-20222828 Msa1239090:CDS 40.0%
! GCAGTTGATATCTGGTCTAT+GGG - chr8_2:20222810-20222829 Msa1239090:CDS 40.0%
! GCATATTTGCTGAGATGCTT+AGG - chr8_2:20222835-20222854 Msa1239090:CDS 40.0%
TCATCATTACCAACGAACAG+AGG + chr8_2:20222867-20222886 None:intergenic 40.0%
TTGCATATAGAAGACACACC+AGG + chr8_2:20223034-20223053 None:intergenic 40.0%
ATACCTTTGGCACAATTGGA+GGG + chr8_2:20223075-20223094 None:intergenic 40.0%
AATACCTTTGGCACAATTGG+AGG + chr8_2:20223076-20223095 None:intergenic 40.0%
GAAAGAAGATCAAGACCATC+TGG + chr8_2:20223211-20223230 None:intergenic 40.0%
AAATCCTACTATTTGGGCAC+AGG + chr8_2:20223438-20223457 None:intergenic 40.0%
TTTAGGCTGATAACTGCAGA+AGG - chr8_2:20221724-20221743 Msa1239090:intron 40.0%
ACGTCCTCTTCGCTAAAAAT+CGG + chr8_2:20221775-20221794 None:intergenic 40.0%
! ACGCGATTTAAGATACTGTG+TGG + chr8_2:20221847-20221866 None:intergenic 40.0%
TTTCCATCACTGTCTGCAAT+CGG + chr8_2:20222111-20222130 None:intergenic 40.0%
GAAAAATCTGCAAGGACAAG+AGG + chr8_2:20222487-20222506 None:intergenic 40.0%
TTCACGCAGAAAAATCTGCA+AGG + chr8_2:20222495-20222514 None:intergenic 40.0%
GAAGCTATCTGACTTTAGTG+CGG - chr8_2:20222619-20222638 Msa1239090:intron 40.0%
AGTTCAGGTGCTTTATAGCA+AGG + chr8_2:20222762-20222781 None:intergenic 40.0%
GTAGAACCCATCAAAAGTTC+AGG + chr8_2:20222777-20222796 None:intergenic 40.0%
! ACTCAACTGCAGTTGATATC+TGG - chr8_2:20222802-20222821 Msa1239090:CDS 40.0%
! TGCAGTTGATATCTGGTCTA+TGG - chr8_2:20222809-20222828 Msa1239090:CDS 40.0%
! GCAGTTGATATCTGGTCTAT+GGG - chr8_2:20222810-20222829 Msa1239090:CDS 40.0%
! GCATATTTGCTGAGATGCTT+AGG - chr8_2:20222835-20222854 Msa1239090:CDS 40.0%
TCATCATTACCAACGAACAG+AGG + chr8_2:20222867-20222886 None:intergenic 40.0%
TTGCATATAGAAGACACACC+AGG + chr8_2:20223034-20223053 None:intergenic 40.0%
ATACCTTTGGCACAATTGGA+GGG + chr8_2:20223075-20223094 None:intergenic 40.0%
AATACCTTTGGCACAATTGG+AGG + chr8_2:20223076-20223095 None:intergenic 40.0%
GAAAGAAGATCAAGACCATC+TGG + chr8_2:20223211-20223230 None:intergenic 40.0%
AAATCCTACTATTTGGGCAC+AGG + chr8_2:20223438-20223457 None:intergenic 40.0%
TGATAACTGCAGAAGGTGGA+AGG - chr8_2:20221731-20221750 Msa1239090:intron 45.0%
!!! CAAGCCGATTTTTAGCGAAG+AGG - chr8_2:20221768-20221787 Msa1239090:intron 45.0%
CGAAGAGGACGTAACTATCA+TGG - chr8_2:20221783-20221802 Msa1239090:intron 45.0%
TTGACACGACAATATTGGGG+TGG + chr8_2:20221891-20221910 None:intergenic 45.0%
ATTCCGATTGCAGACAGTGA+TGG - chr8_2:20222105-20222124 Msa1239090:intron 45.0%
! GCAGACAGTGATGGAAACTA+AGG - chr8_2:20222114-20222133 Msa1239090:CDS 45.0%
TTAAAAACTCCGGATCGGTG+AGG + chr8_2:20222189-20222208 None:intergenic 45.0%
CTGCAAGGACAAGAGGAAAA+TGG + chr8_2:20222480-20222499 None:intergenic 45.0%
ATAGAGTACGGTGAAAGAGG+AGG + chr8_2:20222659-20222678 None:intergenic 45.0%
TATAGAAGACACACCAGGCA+AGG + chr8_2:20223029-20223048 None:intergenic 45.0%
TTTGCCTGTGCCCAAATAGT+AGG - chr8_2:20223431-20223450 Msa1239090:intron 45.0%
TGATAACTGCAGAAGGTGGA+AGG - chr8_2:20221731-20221750 Msa1239090:intron 45.0%
!!! CAAGCCGATTTTTAGCGAAG+AGG - chr8_2:20221768-20221787 Msa1239090:intron 45.0%
CGAAGAGGACGTAACTATCA+TGG - chr8_2:20221783-20221802 Msa1239090:intron 45.0%
TTGACACGACAATATTGGGG+TGG + chr8_2:20221891-20221910 None:intergenic 45.0%
ATTCCGATTGCAGACAGTGA+TGG - chr8_2:20222105-20222124 Msa1239090:intron 45.0%
! GCAGACAGTGATGGAAACTA+AGG - chr8_2:20222114-20222133 Msa1239090:CDS 45.0%
TTAAAAACTCCGGATCGGTG+AGG + chr8_2:20222189-20222208 None:intergenic 45.0%
CTGCAAGGACAAGAGGAAAA+TGG + chr8_2:20222480-20222499 None:intergenic 45.0%
ATAGAGTACGGTGAAAGAGG+AGG + chr8_2:20222659-20222678 None:intergenic 45.0%
TATAGAAGACACACCAGGCA+AGG + chr8_2:20223029-20223048 None:intergenic 45.0%
TTTGCCTGTGCCCAAATAGT+AGG - chr8_2:20223431-20223450 Msa1239090:intron 45.0%
AGGCTGATAACTGCAGAAGG+TGG - chr8_2:20221727-20221746 Msa1239090:intron 50.0%
TTTCTGCGTGAAGCTCTCTC+TGG - chr8_2:20222503-20222522 Msa1239090:CDS 50.0%
CCAGGCAAGGTTTCTTCAGT+TGG + chr8_2:20223016-20223035 None:intergenic 50.0%
CCAACTGAAGAAACCTTGCC+TGG - chr8_2:20223013-20223032 Msa1239090:intron 50.0%
CAACCCTCCAATTGTGCCAA+AGG - chr8_2:20223069-20223088 Msa1239090:intron 50.0%
! GCTCAGGGAATTTTGCTGCT+AGG + chr8_2:20223183-20223202 None:intergenic 50.0%
AGGCTGATAACTGCAGAAGG+TGG - chr8_2:20221727-20221746 Msa1239090:intron 50.0%
TTTCTGCGTGAAGCTCTCTC+TGG - chr8_2:20222503-20222522 Msa1239090:CDS 50.0%
CCAGGCAAGGTTTCTTCAGT+TGG + chr8_2:20223016-20223035 None:intergenic 50.0%
CCAACTGAAGAAACCTTGCC+TGG - chr8_2:20223013-20223032 Msa1239090:intron 50.0%
CAACCCTCCAATTGTGCCAA+AGG - chr8_2:20223069-20223088 Msa1239090:intron 50.0%
! GCTCAGGGAATTTTGCTGCT+AGG + chr8_2:20223183-20223202 None:intergenic 50.0%
GCGTGAAGCTCTCTCTGGAT+TGG - chr8_2:20222508-20222527 Msa1239090:CDS 55.0%
AGGCTCGAACCTCTGTTCGT+TGG - chr8_2:20222855-20222874 Msa1239090:CDS 55.0%
TTCCCTGAGCTCGAACCAGA+TGG - chr8_2:20223193-20223212 Msa1239090:intron 55.0%
! GACCATCTGGTTCGAGCTCA+GGG + chr8_2:20223198-20223217 None:intergenic 55.0%
! AGACCATCTGGTTCGAGCTC+AGG + chr8_2:20223199-20223218 None:intergenic 55.0%
GCGTGAAGCTCTCTCTGGAT+TGG - chr8_2:20222508-20222527 Msa1239090:CDS 55.0%
AGGCTCGAACCTCTGTTCGT+TGG - chr8_2:20222855-20222874 Msa1239090:CDS 55.0%
TTCCCTGAGCTCGAACCAGA+TGG - chr8_2:20223193-20223212 Msa1239090:intron 55.0%
! GACCATCTGGTTCGAGCTCA+GGG + chr8_2:20223198-20223217 None:intergenic 55.0%
! AGACCATCTGGTTCGAGCTC+AGG + chr8_2:20223199-20223218 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 20221511 20223516 20221511 ID=Msa1239090;Name=Msa1239090
chr8_2 mRNA 20221511 20223516 20221511 ID=Msa1239090-mRNA-1;Parent=Msa1239090;Name=Msa1239090-mRNA-1;_AED=0.27;_eAED=0.33;_QI=0|0|0|0.75|1|1|8|0|253
chr8_2 exon 20223506 20223516 20223506 ID=Msa1239090-mRNA-1:exon:7434;Parent=Msa1239090-mRNA-1
chr8_2 exon 20223235 20223355 20223235 ID=Msa1239090-mRNA-1:exon:7433;Parent=Msa1239090-mRNA-1
chr8_2 exon 20222799 20222909 20222799 ID=Msa1239090-mRNA-1:exon:7432;Parent=Msa1239090-mRNA-1
chr8_2 exon 20222411 20222527 20222411 ID=Msa1239090-mRNA-1:exon:7431;Parent=Msa1239090-mRNA-1
chr8_2 exon 20222114 20222277 20222114 ID=Msa1239090-mRNA-1:exon:7430;Parent=Msa1239090-mRNA-1
chr8_2 exon 20221937 20222027 20221937 ID=Msa1239090-mRNA-1:exon:7429;Parent=Msa1239090-mRNA-1
chr8_2 exon 20221796 20221849 20221796 ID=Msa1239090-mRNA-1:exon:7428;Parent=Msa1239090-mRNA-1
chr8_2 exon 20221511 20221603 20221511 ID=Msa1239090-mRNA-1:exon:7427;Parent=Msa1239090-mRNA-1
chr8_2 CDS 20223506 20223516 20223506 ID=Msa1239090-mRNA-1:cds;Parent=Msa1239090-mRNA-1
chr8_2 CDS 20223235 20223355 20223235 ID=Msa1239090-mRNA-1:cds;Parent=Msa1239090-mRNA-1
chr8_2 CDS 20222799 20222909 20222799 ID=Msa1239090-mRNA-1:cds;Parent=Msa1239090-mRNA-1
chr8_2 CDS 20222411 20222527 20222411 ID=Msa1239090-mRNA-1:cds;Parent=Msa1239090-mRNA-1
chr8_2 CDS 20222114 20222277 20222114 ID=Msa1239090-mRNA-1:cds;Parent=Msa1239090-mRNA-1
chr8_2 CDS 20221937 20222027 20221937 ID=Msa1239090-mRNA-1:cds;Parent=Msa1239090-mRNA-1
chr8_2 CDS 20221796 20221849 20221796 ID=Msa1239090-mRNA-1:cds;Parent=Msa1239090-mRNA-1
chr8_2 CDS 20221511 20221603 20221511 ID=Msa1239090-mRNA-1:cds;Parent=Msa1239090-mRNA-1
Gene Sequence

>Msa1239090

ATGGAAATGTTACTGCATCTAACAAAAGAGCAATATAAAGTGCTAAATAGCACATATAAAGATTTTAGGCTGATAACTGCAGAAGGTGGAAGGCATATTATCAAGTGCAAGCCGATTTTTAGCGAAGAGGACACAGTGATGGAAACTAAGGATGCAGTGTTTCTTGTTTATGAGCATCTTGACACTAGTCTTAAAAAATACCTCACCGATCCGGAGTTTTTAAACATTCCAAACTGGAAAAAAATTTTTCTGCGTGAAGCTCTCTCTGGATTGGCATTCTGCCATATTCGCAAAATTCTACACGGAGATCTGAAACCTAATAATATTCTGGCTTCAGTTGAAAAATTGGATGTCAAGAAAATGGGTAATCCTTGCTATAAAGCACCTGAACTTTTGATGGGTTCTACCAATTACTCAACTGCAGTTGATATCTGGTCTATGGGATGCATATTTGCTGAGATGCTTAGGCTCGAACCTCTGTTCGTTGGTAATGATGAACCGCATATATTGGCTAAGATATTTTGCTTGCTCGGTACGCCAACTGAAGAAACCTTGCCTGGTGTGTCTTCTATATGCAACTATATTGAAGCATTCAACCCTCCAATTGTGCCAAAGGACCTAGCAGCAAAATTCCCTGAGCTCGAACCAGATGGTCTTGATCTTCTTTCGAAAATGCTTTGCCTGTGCCCAAATAGTAGGATTTCAGCTGATGAAGCTCTTGAGCATCCATATCTTCGAATTTTAACCACCCATGATGATTGA
Protein sequence

>Msa1239090

MEMLLHLTKEQYKVLNSTYKDFRLITAEGGRHIIKCKPIFSEEDTVMETKDAVFLVYEHLDTSLKKYLTDPEFLNIPNWKKIFLREALSGLAFCHIRKILHGDLKPNNILASVEKLDVKKMGNPCYKAPELLMGSTNYSTAVDIWSMGCIFAEMLRLEPLFVGNDEPHILAKIFCLLGTPTEETLPGVSSICNYIEAFNPPIVPKDLAAKFPELEPDGLDLLSKMLCLCPNSRISADEALEHPYLRILTTHDD*