AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1239350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1239350 MtrunA17_Chr8g0351041 77.011 87 18 1 11 97 1 85 1.27e-40 132
Msa1239350 MtrunA17_Chr8g0351031 75.862 87 19 1 11 97 1 85 2.08e-39 130
Msa1239350 MtrunA17_Chr7g0246431 86.567 67 9 0 11 77 1 67 1.09e-37 126
Msa1239350 MtrunA17_Chr4g0057151 82.090 67 12 0 11 77 1 67 6.83e-34 116
Msa1239350 MtrunA17_Chr3g0077501 74.627 67 17 0 11 77 1 67 6.59e-32 111
Msa1239350 MtrunA17_Chr3g0097101 71.429 70 20 0 8 77 13 82 1.23e-31 111
Msa1239350 MtrunA17_Chr2g0284911 60.204 98 35 2 10 106 15 109 2.26e-31 111
Msa1239350 MtrunA17_Chr8g0380021 58.163 98 37 2 10 106 16 110 3.56e-31 110
Msa1239350 MtrunA17_Chr7g0246381 74.194 62 16 0 11 72 1 62 7.63e-29 99.4
Msa1239350 MtrunA17_Chr4g0061671 73.770 61 16 0 11 71 1 61 1.56e-28 102
Msa1239350 MtrunA17_Chr6g0455511 56.436 101 41 2 11 108 1 101 2.87e-28 102
Msa1239350 MtrunA17_Chr8g0351051 70.149 67 20 0 11 77 1 67 3.55e-28 102
Msa1239350 MtrunA17_Chr7g0220111 55.446 101 42 2 11 108 1 101 4.31e-28 102
Msa1239350 MtrunA17_Chr3g0122251 75.806 62 15 0 11 72 1 62 5.65e-28 102
Msa1239350 MtrunA17_Chr5g0420091 70.968 62 18 0 11 72 1 62 9.12e-28 100
Msa1239350 MtrunA17_Chr2g0279821 68.657 67 21 0 11 77 1 67 1.16e-27 101
Msa1239350 MtrunA17_Chr8g0377561 75.862 58 14 0 11 68 1 58 1.40e-27 97.1
Msa1239350 MtrunA17_Chr4g0020221 54.082 98 41 1 11 104 1 98 1.18e-26 99.0
Msa1239350 MtrunA17_Chr2g0308251 72.881 59 16 0 11 69 1 59 3.04e-26 93.2
Msa1239350 MtrunA17_Chr1g0173161 71.667 60 17 0 11 70 1 60 3.93e-26 92.8
Msa1239350 MtrunA17_Chr5g0427921 68.333 60 19 0 11 70 1 60 5.17e-26 92.0
Msa1239350 MtrunA17_Chr8g0366231 72.131 61 17 0 11 71 1 61 2.38e-25 95.1
Msa1239350 MtrunA17_Chr5g0411691 49.495 99 40 2 11 106 1 92 6.50e-25 94.0
Msa1239350 MtrunA17_Chr4g0049541 56.098 82 35 1 11 91 1 82 7.76e-25 93.6
Msa1239350 MtrunA17_Chr6g0474371 67.213 61 20 0 11 71 1 61 1.38e-24 92.0
Msa1239350 MtrunA17_Chr4g0061691 71.186 59 17 0 11 69 1 59 2.47e-24 92.4
Msa1239350 MtrunA17_Chr3g0142191 65.625 64 22 0 11 74 1 64 2.76e-24 92.0
Msa1239350 MtrunA17_Chr4g0018421 56.410 78 32 1 11 88 1 76 2.96e-24 91.3
Msa1239350 MtrunA17_Chr1g0204111 58.333 72 30 0 6 77 12 83 3.33e-24 92.4
Msa1239350 MtrunA17_Chr5g0427401 62.121 66 25 0 11 76 1 66 4.72e-24 91.7
Msa1239350 MtrunA17_Chr5g0412271 62.687 67 25 0 11 77 1 67 9.73e-24 90.9
Msa1239350 MtrunA17_Chr5g0412461 62.687 67 25 0 11 77 1 67 1.12e-23 90.5
Msa1239350 MtrunA17_Chr7g0220121 62.500 72 25 1 11 82 1 70 5.22e-23 89.4
Msa1239350 MtrunA17_Chr5g0425191 66.102 59 20 0 11 69 1 59 1.03e-22 84.7
Msa1239350 MtrunA17_Chr5g0420081 65.574 61 21 0 11 71 1 61 1.44e-22 87.8
Msa1239350 MtrunA17_Chr3g0125241 60.656 61 24 0 11 71 26 86 1.82e-22 87.0
Msa1239350 MtrunA17_Chr4g0044071 62.712 59 22 0 11 69 1 59 3.18e-22 84.0
Msa1239350 MtrunA17_Chr4g0049901 59.701 67 27 0 11 77 27 93 1.11e-21 85.5
Msa1239350 MtrunA17_Chr1g0159661 54.839 62 28 0 11 72 1 62 1.77e-21 83.6
Msa1239350 MtrunA17_Chr3g0134451 66.667 60 20 0 11 70 1 60 1.95e-21 86.3
Msa1239350 MtrunA17_Chr1g0164791 58.730 63 26 0 11 73 1 63 7.53e-21 83.2
Msa1239350 MtrunA17_Chr5g0404951 56.522 69 28 1 11 77 1 69 1.62e-20 82.4
Msa1239350 MtrunA17_Chr2g0333981 41.667 96 55 1 1 95 1 96 1.22e-19 79.0
Msa1239350 MtrunA17_Chr1g0166611 72.917 48 13 0 23 70 17 64 9.11e-19 75.5
Msa1239350 MtrunA17_Chr1g0208581 50.769 65 32 0 13 77 10 74 5.32e-18 75.9
Msa1239350 MtrunA17_Chr2g0292791 52.308 65 31 0 13 77 10 74 1.29e-17 74.7
Msa1239350 MtrunA17_Chr1g0208561 49.231 65 33 0 13 77 10 74 6.64e-17 72.8
Msa1239350 MtrunA17_Chr3g0089141 49.231 65 33 0 13 77 10 74 6.71e-17 72.8
Msa1239350 MtrunA17_Chr8g0379021 47.887 71 37 0 7 77 7 77 8.15e-17 71.6
Msa1239350 MtrunA17_Chr8g0376821 56.897 58 25 0 11 68 1 58 1.18e-16 71.2
Msa1239350 MtrunA17_Chr1g0175611 44.186 86 37 1 11 96 1 75 1.20e-16 70.9
Msa1239350 MtrunA17_Chr1g0149391 43.590 78 44 0 13 90 10 87 1.37e-16 72.0
Msa1239350 MtrunA17_Chr1g0169761 56.897 58 25 0 11 68 1 58 2.08e-16 70.5
Msa1239350 MtrunA17_Chr3g0099411 49.231 65 33 0 13 77 10 74 2.59e-16 71.2
Msa1239350 MtrunA17_Chr4g0018951 51.471 68 32 1 24 90 24 91 3.45e-16 69.7
Msa1239350 MtrunA17_Chr1g0206721 49.231 65 33 0 13 77 10 74 3.48e-16 71.2
Msa1239350 MtrunA17_Chr5g0419601 47.143 70 37 0 8 77 5 74 3.75e-16 70.9
Msa1239350 MtrunA17_Chr5g0422421 50.769 65 32 0 13 77 10 74 4.62e-16 70.9
Msa1239350 MtrunA17_Chr3g0099421 50.769 65 32 0 13 77 35 99 4.78e-16 70.9
Msa1239350 MtrunA17_Chr1g0206701 49.231 65 33 0 13 77 10 74 4.91e-16 70.9
Msa1239350 MtrunA17_Chr8g0355091 49.231 65 33 0 13 77 10 74 7.01e-16 70.5
Msa1239350 MtrunA17_Chr1g0180591 53.448 58 27 0 11 68 1 58 7.22e-16 69.3
Msa1239350 MtrunA17_Chr1g0188671 49.231 65 33 0 13 77 48 112 7.89e-16 70.5
Msa1239350 MtrunA17_Chr1g0175601 55.172 58 26 0 11 68 1 58 9.10e-16 68.9
Msa1239350 MtrunA17_Chr1g0187361 49.231 65 33 0 13 77 10 74 1.04e-15 69.7
Msa1239350 MtrunA17_Chr5g0417661 52.830 53 25 0 11 63 56 108 1.21e-15 67.4
Msa1239350 MtrunA17_Chr4g0074101 53.448 58 27 0 11 68 1 58 1.32e-15 68.9
Msa1239350 MtrunA17_Chr2g0317481 41.111 90 41 1 13 90 10 99 1.35e-15 69.7
Msa1239350 MtrunA17_Chr2g0317451 41.111 90 41 1 13 90 10 99 1.44e-15 69.3
Msa1239350 MtrunA17_Chr8g0357771 52.459 61 29 0 11 71 1 61 1.99e-15 68.2
Msa1239350 MtrunA17_Chr2g0325971 47.692 65 34 0 13 77 10 74 2.76e-15 68.6
Msa1239350 MtrunA17_Chr1g0206991 46.154 65 35 0 13 77 10 74 2.93e-15 67.8
Msa1239350 MtrunA17_Chr5g0422941 47.692 65 34 0 13 77 10 74 6.36e-15 67.8
Msa1239350 MtrunA17_Chr3g0111841 42.308 78 39 1 18 95 2 73 1.04e-14 63.5
Msa1239350 MtrunA17_Chr4g0071601 42.553 94 53 1 1 93 1 94 1.06e-14 66.2
Msa1239350 MtrunA17_Chr2g0300421 46.269 67 35 1 13 79 10 75 1.54e-14 65.5
Msa1239350 MtrunA17_Chr4g0052081 49.153 59 30 0 11 69 1 59 1.83e-14 65.5
Msa1239350 MtrunA17_Chr1g0187351 41.026 78 40 1 21 98 1 72 2.07e-14 62.8
Msa1239350 MtrunA17_Chr4g0052061 45.902 61 33 0 11 71 1 61 3.21e-14 64.3
Msa1239350 MtrunA17_Chr3g0119901 43.056 72 41 0 6 77 3 74 6.35e-14 64.7
Msa1239350 MtrunA17_Chr3g0089151 44.118 68 36 1 12 77 7 74 1.25e-13 62.4
Msa1239350 MtrunA17_Chr2g0300441 44.444 63 35 0 15 77 12 74 2.17e-13 63.5
Msa1239350 MtrunA17_Chr3g0085241 42.254 71 41 0 7 77 36 106 2.64e-13 63.5
Msa1239350 MtrunA17_Chr8g0356071 38.372 86 51 2 11 94 1 86 3.03e-13 62.0
Msa1239350 MtrunA17_Chr4g0060841 50.943 53 26 0 11 63 1 53 3.63e-13 63.9
Msa1239350 MtrunA17_Chr1g0206691 47.368 57 30 0 21 77 1 57 8.27e-13 62.0
Msa1239350 MtrunA17_Chr6g0457851 50.000 52 26 0 9 60 9 60 7.07e-12 60.1
Msa1239350 MtrunA17_Chr6g0449851 47.059 51 27 0 11 61 1 51 4.83e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1239350 AT2G45660.2 86.567 67 9 0 11 77 1 67 7.49e-39 127
Msa1239350 AT2G45660.1 86.567 67 9 0 11 77 1 67 8.18e-38 127
Msa1239350 AT4G11880.2 91.935 62 5 0 11 72 1 62 1.04e-36 122
Msa1239350 AT4G11880.3 91.935 62 5 0 11 72 1 62 1.04e-36 122
Msa1239350 AT4G22950.2 83.582 67 11 0 11 77 1 67 1.50e-36 122
Msa1239350 AT4G11880.4 91.935 62 5 0 11 72 1 62 3.48e-36 122
Msa1239350 AT4G11880.1 91.935 62 5 0 11 72 1 62 3.48e-36 122
Msa1239350 AT4G22950.3 83.582 67 11 0 11 77 1 67 1.64e-35 121
Msa1239350 AT4G22950.1 83.582 67 11 0 11 77 1 67 1.64e-35 121
Msa1239350 AT5G62165.6 76.119 67 16 0 11 77 1 67 5.73e-34 115
Msa1239350 AT5G62165.9 76.119 67 16 0 11 77 1 67 5.73e-34 115
Msa1239350 AT5G62165.7 76.119 67 16 0 11 77 1 67 5.73e-34 115
Msa1239350 AT5G62165.8 76.119 67 16 0 11 77 1 67 5.73e-34 115
Msa1239350 AT5G62165.13 76.119 67 16 0 11 77 1 67 5.73e-34 115
Msa1239350 AT5G62165.17 76.119 67 16 0 11 77 1 67 7.16e-34 115
Msa1239350 AT5G62165.12 76.119 67 16 0 11 77 1 67 7.16e-34 115
Msa1239350 AT5G62165.11 76.119 67 16 0 11 77 1 67 7.16e-34 115
Msa1239350 AT5G62165.14 76.119 67 16 0 11 77 1 67 1.24e-33 112
Msa1239350 AT4G09960.2 59.794 97 35 2 11 106 1 94 4.82e-33 114
Msa1239350 AT4G09960.6 59.794 97 35 2 11 106 2 95 5.49e-33 115
Msa1239350 AT4G09960.1 59.794 97 35 2 11 106 1 94 5.72e-33 114
Msa1239350 AT5G62165.10 76.119 67 16 0 11 77 1 67 6.05e-33 114
Msa1239350 AT5G62165.4 76.119 67 16 0 11 77 1 67 6.05e-33 114
Msa1239350 AT5G62165.3 76.119 67 16 0 11 77 1 67 6.06e-33 114
Msa1239350 AT5G62165.1 76.119 67 16 0 11 77 1 67 6.06e-33 114
Msa1239350 AT5G62165.2 76.119 67 16 0 11 77 1 67 6.06e-33 114
Msa1239350 AT4G09960.5 59.794 97 35 2 11 106 11 104 1.04e-32 114
Msa1239350 AT4G09960.3 59.184 98 36 2 10 106 26 120 1.23e-32 114
Msa1239350 AT2G42830.2 56.122 98 39 2 10 106 15 109 1.76e-31 111
Msa1239350 AT2G42830.1 56.122 98 39 2 10 106 15 109 1.91e-31 111
Msa1239350 AT4G09960.4 59.184 98 36 2 10 106 95 189 2.42e-31 113
Msa1239350 AT3G58780.1 55.102 98 40 2 10 106 15 109 5.55e-31 110
Msa1239350 AT3G58780.5 55.102 98 40 2 10 106 21 115 6.68e-31 110
Msa1239350 AT4G18960.1 57.143 98 38 2 10 106 16 110 1.18e-30 109
Msa1239350 AT3G58780.4 55.102 98 40 2 10 106 15 109 1.98e-30 109
Msa1239350 AT3G57230.2 55.208 96 40 1 11 106 1 93 2.20e-29 103
Msa1239350 AT2G45650.1 73.134 67 18 0 11 77 1 67 2.22e-29 106
Msa1239350 AT5G51860.2 55.319 94 36 3 11 103 1 89 4.72e-29 103
Msa1239350 AT5G51860.1 55.319 94 36 3 11 103 1 89 5.80e-29 103
Msa1239350 AT3G57230.1 55.208 96 40 1 11 106 1 93 7.07e-29 104
Msa1239350 AT3G57230.4 55.208 96 40 1 11 106 1 93 7.07e-29 104
Msa1239350 AT3G58780.3 75.806 62 15 0 10 71 15 76 1.06e-28 105
Msa1239350 AT3G58780.2 73.438 64 17 0 10 73 15 78 1.67e-28 103
Msa1239350 AT2G03710.3 53.763 93 39 1 11 103 1 89 2.72e-28 101
Msa1239350 AT5G15800.1 73.529 68 17 1 11 77 1 68 3.71e-28 103
Msa1239350 AT5G15800.2 73.529 68 17 1 11 77 1 68 5.75e-28 102
Msa1239350 AT1G24260.3 75.806 62 15 0 11 72 1 62 6.10e-28 102
Msa1239350 AT1G24260.2 75.806 62 15 0 11 72 1 62 6.98e-28 102
Msa1239350 AT5G51870.2 56.383 94 35 2 11 103 1 89 7.28e-28 100
Msa1239350 AT1G24260.1 75.806 62 15 0 11 72 1 62 7.29e-28 102
Msa1239350 AT3G02310.2 75.410 61 15 0 11 71 1 61 1.21e-27 100
Msa1239350 AT5G51870.1 56.383 94 35 2 11 103 1 89 1.58e-27 100
Msa1239350 AT5G51870.5 55.670 97 37 2 8 103 21 112 1.91e-27 99.8
Msa1239350 AT2G03710.2 53.763 93 39 1 11 103 1 89 2.63e-27 100
Msa1239350 AT3G02310.1 75.410 61 15 0 11 71 1 61 2.72e-27 100
Msa1239350 AT2G03710.1 53.763 93 39 1 11 103 1 89 2.83e-27 100
Msa1239350 AT5G51870.4 56.383 94 35 2 11 103 1 89 4.31e-27 99.4
Msa1239350 AT4G37940.1 56.322 87 37 1 11 96 1 87 4.53e-27 99.8
Msa1239350 AT4G37940.4 56.322 87 37 1 11 96 1 87 4.73e-27 99.4
Msa1239350 AT5G51870.3 56.383 94 35 2 11 103 11 99 5.32e-27 99.8
Msa1239350 AT4G37940.3 54.639 97 39 2 11 106 1 93 1.04e-26 97.4
Msa1239350 AT5G13790.1 72.727 66 18 0 11 76 1 66 1.36e-26 99.4
Msa1239350 AT5G13790.2 72.727 66 18 0 11 76 1 66 1.36e-26 99.4
Msa1239350 AT3G61120.1 64.179 67 24 0 11 77 1 67 3.71e-25 95.1
Msa1239350 AT2G14210.1 65.152 66 23 0 11 76 1 66 4.23e-25 94.7
Msa1239350 AT2G14210.2 65.152 66 23 0 11 76 1 66 4.71e-25 94.7
Msa1239350 AT5G60910.1 70.492 61 18 0 11 71 1 61 4.92e-25 94.7
Msa1239350 AT2G22540.3 67.164 67 22 0 11 77 1 67 1.01e-24 94.0
Msa1239350 AT2G22540.1 67.164 67 22 0 11 77 1 67 1.01e-24 94.0
Msa1239350 AT1G69120.2 68.852 61 19 0 11 71 1 61 1.06e-24 93.6
Msa1239350 AT3G30260.1 67.647 68 21 1 11 77 1 68 1.45e-24 93.6
Msa1239350 AT2G22630.1 64.179 67 24 0 11 77 1 67 1.67e-24 93.2
Msa1239350 AT2G22630.2 64.179 67 24 0 11 77 1 67 1.67e-24 93.2
Msa1239350 AT3G57390.3 69.492 59 18 0 11 69 1 59 1.86e-24 92.8
Msa1239350 AT1G69120.1 68.852 61 19 0 11 71 1 61 2.50e-24 93.2
Msa1239350 AT3G57390.1 69.492 59 18 0 11 69 1 59 3.67e-24 92.8
Msa1239350 AT1G71692.1 67.797 59 19 0 11 69 1 59 7.09e-24 90.9
Msa1239350 AT1G26310.1 68.852 61 19 0 11 71 1 61 8.69e-24 91.7
Msa1239350 AT3G54340.1 55.263 76 32 1 11 84 1 76 2.79e-23 90.1
Msa1239350 AT4G24540.1 62.121 66 25 0 11 76 1 66 7.60e-22 85.9
Msa1239350 AT5G10140.2 66.667 60 20 0 11 70 1 60 7.65e-22 84.7
Msa1239350 AT5G10140.4 66.667 60 20 0 11 70 1 60 1.24e-21 84.7
Msa1239350 AT5G20240.2 60.656 61 24 0 11 71 1 61 1.71e-21 83.2
Msa1239350 AT5G23260.1 58.824 68 28 0 6 73 12 79 1.78e-21 85.9
Msa1239350 AT5G10140.1 66.667 60 20 0 11 70 1 60 1.85e-21 84.3
Msa1239350 AT5G23260.4 58.824 68 28 0 6 73 12 79 1.87e-21 85.9
Msa1239350 AT5G10140.3 67.797 59 19 0 11 69 1 59 1.89e-21 84.3
Msa1239350 AT5G23260.3 61.905 63 24 0 11 73 1 63 6.87e-21 84.0
Msa1239350 AT5G23260.2 61.905 63 24 0 11 73 1 63 8.24e-21 84.0
Msa1239350 AT5G20240.1 60.656 61 24 0 11 71 1 61 9.51e-21 82.8
Msa1239350 AT2G22540.2 66.667 57 19 0 11 67 1 57 1.11e-20 83.2
Msa1239350 AT5G65070.4 59.677 62 25 0 11 72 1 62 1.35e-20 80.9
Msa1239350 AT5G65070.1 59.677 62 25 0 11 72 1 62 3.18e-20 81.3
Msa1239350 AT5G65070.5 59.677 62 25 0 11 72 1 62 8.07e-20 80.5
Msa1239350 AT5G65070.2 59.677 62 25 0 11 72 1 62 8.14e-20 80.9
Msa1239350 AT1G22130.1 63.934 61 22 0 11 71 1 61 9.50e-20 82.4
Msa1239350 AT1G77980.1 62.295 61 23 0 11 71 1 61 1.42e-19 81.6
Msa1239350 AT5G65070.3 62.712 59 22 0 11 69 1 59 1.75e-19 80.1
Msa1239350 AT5G65050.2 59.322 59 24 0 11 69 1 59 5.18e-19 77.8
Msa1239350 AT5G65050.1 54.545 66 30 0 11 76 1 66 9.93e-19 77.0
Msa1239350 AT5G65050.5 56.250 64 28 0 11 74 1 64 1.20e-18 77.0
Msa1239350 AT5G65050.3 56.250 64 28 0 11 74 1 64 1.30e-18 77.0
Msa1239350 AT1G77950.3 55.738 61 27 0 11 71 1 61 2.02e-17 75.1
Msa1239350 AT1G77950.2 55.738 61 27 0 11 71 1 61 2.02e-17 75.1
Msa1239350 AT1G77950.1 55.738 61 27 0 11 71 1 61 2.02e-17 75.1
Msa1239350 AT1G77950.4 55.738 61 27 0 11 71 1 61 2.02e-17 75.1
Msa1239350 AT1G31140.2 54.839 62 28 0 11 72 1 62 2.83e-17 73.9
Msa1239350 AT1G31140.1 54.839 62 28 0 11 72 1 62 2.92e-17 73.9
Msa1239350 AT5G65060.3 51.515 66 32 0 11 76 1 66 3.42e-17 73.2
Msa1239350 AT5G65060.1 51.515 66 32 0 11 76 1 66 3.83e-17 73.2
Msa1239350 AT5G65060.2 51.515 66 32 0 11 76 1 66 3.86e-17 73.2
Msa1239350 AT5G65080.3 43.182 88 47 1 6 93 3 87 3.97e-17 73.2
Msa1239350 AT4G37435.1 42.553 94 52 2 11 104 1 92 8.83e-17 72.0
Msa1239350 AT5G65080.2 52.308 65 31 0 6 70 3 67 9.58e-17 72.4
Msa1239350 AT1G01530.1 46.479 71 38 0 8 78 3 73 1.13e-16 72.8
Msa1239350 AT1G18750.3 54.386 57 26 0 11 67 1 57 1.26e-15 71.2
Msa1239350 AT2G24840.1 50.725 69 34 0 9 77 60 128 1.32e-15 70.5
Msa1239350 AT1G18750.4 54.386 57 26 0 11 67 1 57 1.41e-15 71.2
Msa1239350 AT1G18750.1 54.386 57 26 0 11 67 1 57 1.54e-15 70.9
Msa1239350 AT2G34440.1 42.667 75 42 1 11 84 1 75 1.80e-15 68.6
Msa1239350 AT3G66656.1 51.724 58 28 0 11 68 1 58 2.22e-15 68.2
Msa1239350 AT5G60440.1 49.231 65 33 0 13 77 8 72 3.43e-15 69.7
Msa1239350 AT4G36590.1 51.562 64 31 0 13 76 8 71 4.85e-15 68.6
Msa1239350 AT1G77080.5 59.322 59 24 0 11 69 1 59 5.28e-14 64.7
Msa1239350 AT1G77080.11 59.322 59 24 0 11 69 1 59 6.13e-14 64.3
Msa1239350 AT2G03060.3 54.717 53 24 0 11 63 1 53 6.31e-14 66.6
Msa1239350 AT2G03060.7 54.717 53 24 0 11 63 1 53 6.31e-14 66.6
Msa1239350 AT2G03060.1 54.717 53 24 0 11 63 1 53 6.31e-14 66.6
Msa1239350 AT1G77080.12 54.545 66 30 0 11 76 1 66 7.20e-14 63.5
Msa1239350 AT2G03060.2 54.717 53 24 0 11 63 1 53 1.12e-13 65.9
Msa1239350 AT1G65360.1 42.857 70 40 0 8 77 3 72 1.20e-13 64.7
Msa1239350 AT1G77080.4 57.377 61 26 0 11 71 1 61 1.37e-13 63.9
Msa1239350 AT1G77080.2 57.377 61 26 0 11 71 1 61 1.88e-13 63.5
Msa1239350 AT3G04100.1 44.776 67 37 0 15 81 17 83 2.55e-13 63.5
Msa1239350 AT1G77080.8 57.377 61 26 0 11 71 1 61 3.24e-13 63.5
Msa1239350 AT1G72350.1 53.333 60 28 0 13 72 44 103 6.50e-13 62.4
Msa1239350 AT1G69540.2 50.943 53 26 0 11 63 1 53 7.31e-13 63.5
Msa1239350 AT1G69540.1 50.943 53 26 0 11 63 1 53 1.18e-12 62.8
Msa1239350 AT2G26320.1 52.830 53 25 0 8 60 14 66 7.60e-12 57.4
Msa1239350 AT1G28460.1 50.877 57 28 0 15 71 11 67 1.25e-11 58.5
Msa1239350 AT1G47760.1 46.552 58 31 0 11 68 1 58 1.36e-11 58.5
Msa1239350 AT1G29962.1 48.485 66 32 1 8 71 2 67 1.94e-11 58.2

Find 22 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATCATTTATTTCTTAATA+TGG 0.167043 8_2:+20973147 Msa1239350:five_prime_UTR
GAGAAATCGAGCAACGATTT+TGG 0.210435 8_2:-20978000 None:intergenic
CTTAATATGGTGGGGTAAGA+TGG 0.331970 8_2:+20973160 Msa1239350:five_prime_UTR
GTTAAAACCGAGCCTCGATT+TGG 0.377208 8_2:-20978022 None:intergenic
ACATTCTCAAAGAGGAGAAA+TGG 0.421788 8_2:+20974040 Msa1239350:CDS
CATTTATTTCTTAATATGGT+GGG 0.422909 8_2:+20973151 Msa1239350:five_prime_UTR
TTAATATGGTGGGGTAAGAT+GGG 0.445741 8_2:+20973161 Msa1239350:five_prime_UTR
TGGTGGGGTAAGATGGGGTC+AGG 0.482684 8_2:+20973167 Msa1239350:five_prime_UTR
TCATTTATTTCTTAATATGG+TGG 0.491560 8_2:+20973150 Msa1239350:five_prime_UTR
TTTATGAATTTGCTAGCTCT+AGG 0.521973 8_2:+20974143 Msa1239350:CDS
TGGGGTCAGGTTGATTAATG+AGG 0.540818 8_2:+20973180 Msa1239350:exon
ATTTATTTCTTAATATGGTG+GGG 0.544084 8_2:+20973152 Msa1239350:five_prime_UTR
AATTCATAAAGCCTCCCTCT+TGG 0.547865 8_2:-20974130 None:intergenic
TCAGGTTGATTAATGAGGAA+AGG 0.559252 8_2:+20973185 Msa1239350:exon
ATCAGTGTTGTGTGATGCTG+AGG 0.567431 8_2:+20974087 Msa1239350:CDS
CGCTCGATTTCTGCAAATCG+TGG 0.569087 8_2:+20977940 Msa1239350:CDS
TGCTCGATTTCTCCAAATCG+AGG 0.571450 8_2:+20978010 Msa1239350:CDS
GATTTCTCCAAATCGAGGCT+CGG 0.571868 8_2:+20978015 Msa1239350:CDS
GGCAAGTAACATTCTCAAAG+AGG 0.594159 8_2:+20974032 Msa1239350:CDS
ACACAACACTGATAACTCAA+AGG 0.620897 8_2:-20974077 None:intergenic
TAATATGGTGGGGTAAGATG+GGG 0.636610 8_2:+20973162 Msa1239350:five_prime_UTR
GTATAGAGAACGCAACAAGT+AGG 0.642404 8_2:+20974011 Msa1239350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTCTTGAAAAAATTAAA+TGG - chr8_2:20973589-20973608 None:intergenic 10.0%
!!! AATAATAATTTTATACATCA+AGG + chr8_2:20974225-20974244 Msa1239350:intron 10.0%
!!! ATAATAATTTTATACATCAA+GGG + chr8_2:20974226-20974245 Msa1239350:intron 10.0%
!!! TACTTTTTTTTTTTTTTTGA+AGG + chr8_2:20974995-20975014 Msa1239350:intron 10.0%
!!! ATACTGTAATTATTATATTT+TGG + chr8_2:20975269-20975288 Msa1239350:intron 10.0%
!! GAATTTGATATTAAAATTAA+AGG - chr8_2:20975473-20975492 None:intergenic 10.0%
!! TTAAATCCATAATATAATAA+AGG - chr8_2:20975495-20975514 None:intergenic 10.0%
!! TTAAAAAAAAAAAAATCCAA+TGG - chr8_2:20976381-20976400 None:intergenic 10.0%
!!! ATTGGATTTTTTTTTTTTTA+AGG + chr8_2:20976380-20976399 Msa1239350:intron 10.0%
!!! TTGGATTTTTTTTTTTTTAA+GGG + chr8_2:20976381-20976400 Msa1239350:intron 10.0%
!!! AAAATAAAACGTATTTTTAT+GGG - chr8_2:20977899-20977918 None:intergenic 10.0%
!!! AAAAATAAAACGTATTTTTA+TGG - chr8_2:20977900-20977919 None:intergenic 10.0%
!!! CAATCATTTATTTCTTAATA+TGG + chr8_2:20973147-20973166 Msa1239350:five_prime_UTR 15.0%
!! TAAAAAATAAATAAGAGTCA+AGG - chr8_2:20973346-20973365 None:intergenic 15.0%
!!! TTTCTTTTATTTTTCCAATT+TGG + chr8_2:20973437-20973456 Msa1239350:intron 15.0%
!!! TTTTTGTTATGAATTGAAAT+AGG + chr8_2:20973862-20973881 Msa1239350:intron 15.0%
!! ATTAATTAAGTCGAAAAAAA+AGG - chr8_2:20974174-20974193 None:intergenic 15.0%
!! TGTTAGATTAAATATTTAAG+AGG + chr8_2:20974332-20974351 Msa1239350:intron 15.0%
!! GTTAGATTAAATATTTAAGA+GGG + chr8_2:20974333-20974352 Msa1239350:intron 15.0%
!!! TTTTTATTGACTAAACAAAT+AGG + chr8_2:20974453-20974472 Msa1239350:intron 15.0%
!! TGATAACATTAAGTTATATA+GGG + chr8_2:20974940-20974959 Msa1239350:intron 15.0%
!! AATGCAAATATATATATCAA+AGG - chr8_2:20975040-20975059 None:intergenic 15.0%
!! TTTAAAAAATAATGTGTACT+TGG + chr8_2:20975058-20975077 Msa1239350:intron 15.0%
!!! TTTAAGTTACATTTTCATTT+TGG - chr8_2:20975356-20975375 None:intergenic 15.0%
!! CAAATTCCTTTATTATATTA+TGG + chr8_2:20975486-20975505 Msa1239350:intron 15.0%
!! ATAAAGATTCTTTACATTTA+CGG - chr8_2:20975528-20975547 None:intergenic 15.0%
!! ATCATTAATAGTAACAATAT+TGG + chr8_2:20975745-20975764 Msa1239350:intron 15.0%
!!! TAGTTAATAACTTAAGATTT+TGG + chr8_2:20976095-20976114 Msa1239350:intron 15.0%
!!! AGTTAATAACTTAAGATTTT+GGG + chr8_2:20976096-20976115 Msa1239350:intron 15.0%
!!! TATTTGTTCAATTGTTTTTA+GGG - chr8_2:20976648-20976667 None:intergenic 15.0%
!!! ATATTTGTTCAATTGTTTTT+AGG - chr8_2:20976649-20976668 None:intergenic 15.0%
!! AATTTCTAATGTAACAAAAT+TGG - chr8_2:20976939-20976958 None:intergenic 15.0%
!! TCATTGTAAAATAAAAACAA+AGG - chr8_2:20977154-20977173 None:intergenic 15.0%
!!! TCATTTATTTCTTAATATGG+TGG + chr8_2:20973150-20973169 Msa1239350:five_prime_UTR 20.0%
!!! CATTTATTTCTTAATATGGT+GGG + chr8_2:20973151-20973170 Msa1239350:five_prime_UTR 20.0%
!!! ATTTATTTCTTAATATGGTG+GGG + chr8_2:20973152-20973171 Msa1239350:five_prime_UTR 20.0%
!!! ATTATGTATCACTACTTTTT+TGG + chr8_2:20973289-20973308 Msa1239350:intron 20.0%
!!! TTATGTATCACTACTTTTTT+GGG + chr8_2:20973290-20973309 Msa1239350:intron 20.0%
!! ATAAAAGAAAAAATGAACCA+AGG - chr8_2:20973427-20973446 None:intergenic 20.0%
!! GAATTATATCTCATAAAAGA+AGG - chr8_2:20973524-20973543 None:intergenic 20.0%
!!! CTTTTATGAGATATAATTCT+TGG + chr8_2:20973525-20973544 Msa1239350:intron 20.0%
!! AAAATAGATTCCTAGAAAAA+GGG - chr8_2:20973563-20973582 None:intergenic 20.0%
!! TAAAATAGATTCCTAGAAAA+AGG - chr8_2:20973564-20973583 None:intergenic 20.0%
!! TTAAGATCTAGAAAACTATA+AGG - chr8_2:20973774-20973793 None:intergenic 20.0%
!!! TAGTTTTCTAGATCTTAAAA+AGG + chr8_2:20973776-20973795 Msa1239350:intron 20.0%
!! AGAGAAAAGAAAAGAAAAAA+TGG + chr8_2:20973964-20973983 Msa1239350:CDS 20.0%
!! TTCTAATTCCAATGTTATAT+TGG + chr8_2:20974389-20974408 Msa1239350:intron 20.0%
!! TTATGATTCCAATATAACAT+TGG - chr8_2:20974400-20974419 None:intergenic 20.0%
!! GGAAATTTATATATATGAGT+TGG - chr8_2:20974492-20974511 None:intergenic 20.0%
!! TTTGTGATTTATATAATCGA+AGG - chr8_2:20974513-20974532 None:intergenic 20.0%
!! AAATCACAAATAAATCTCTT+AGG + chr8_2:20974523-20974542 Msa1239350:intron 20.0%
!! AATCACAAATAAATCTCTTA+GGG + chr8_2:20974524-20974543 Msa1239350:intron 20.0%
!! GAAAAACATGTTATATAGTA+TGG - chr8_2:20974613-20974632 None:intergenic 20.0%
!!! CATATATCAAGTTTTGATTT+CGG - chr8_2:20974850-20974869 None:intergenic 20.0%
!! CTGATAACATTAAGTTATAT+AGG + chr8_2:20974939-20974958 Msa1239350:intron 20.0%
!!! TTATATTTTGGTTTTCGTAA+AGG + chr8_2:20975281-20975300 Msa1239350:intron 20.0%
!!! TATATTTTGGTTTTCGTAAA+GGG + chr8_2:20975282-20975301 Msa1239350:intron 20.0%
!! AATCATACTCTTGTATTATT+AGG + chr8_2:20975686-20975705 Msa1239350:intron 20.0%
!! ATTAATCATAACCTAAACTA+TGG + chr8_2:20975714-20975733 Msa1239350:intron 20.0%
!! TTAATCATAACCTAAACTAT+GGG + chr8_2:20975715-20975734 Msa1239350:intron 20.0%
!!! CTTGACACTAATATTTTTAA+TGG - chr8_2:20976306-20976325 None:intergenic 20.0%
!! AGTGACAACATATTATTAAA+TGG - chr8_2:20976711-20976730 None:intergenic 20.0%
!!! ATCTATCATTTTGTTTTTGT+TGG + chr8_2:20977292-20977311 Msa1239350:intron 20.0%
!! TATTTAGTAGTGAATTATCT+TGG + chr8_2:20977405-20977424 Msa1239350:intron 20.0%
! ACATAATTGAGGTAAATTCA+AGG - chr8_2:20973276-20973295 None:intergenic 25.0%
! AAAGTAGTGATACATAATTG+AGG - chr8_2:20973287-20973306 None:intergenic 25.0%
!!! TATGTATCACTACTTTTTTG+GGG + chr8_2:20973291-20973310 Msa1239350:intron 25.0%
! TATATCTCATAAAAGAAGGT+GGG - chr8_2:20973520-20973539 None:intergenic 25.0%
! TTATATCTCATAAAAGAAGG+TGG - chr8_2:20973521-20973540 None:intergenic 25.0%
! TATGAGATATAATTCTTGGT+AGG + chr8_2:20973529-20973548 Msa1239350:intron 25.0%
!! AAATGGACGGAAAATTTTAA+GGG - chr8_2:20973706-20973725 None:intergenic 25.0%
! TTTAAACCTTGTAAGGAAAA+GGG - chr8_2:20973815-20973834 None:intergenic 25.0%
! ATTTAAACCTTGTAAGGAAA+AGG - chr8_2:20973816-20973835 None:intergenic 25.0%
! AACACAATTTAAACCTTGTA+AGG - chr8_2:20973822-20973841 None:intergenic 25.0%
!! TAAATTGTGTTTTTCCTTCT+TGG + chr8_2:20973831-20973850 Msa1239350:intron 25.0%
! ACAACACAACAACAAAAATT+AGG - chr8_2:20973935-20973954 None:intergenic 25.0%
!! TCATGCTAATCTTTTATTGT+TGG - chr8_2:20974799-20974818 None:intergenic 25.0%
! TATAACTTGATGTTATGGTT+GGG - chr8_2:20974913-20974932 None:intergenic 25.0%
! ATATAACTTGATGTTATGGT+TGG - chr8_2:20974914-20974933 None:intergenic 25.0%
! ACAGATATAACTTGATGTTA+TGG - chr8_2:20974918-20974937 None:intergenic 25.0%
! TTACCATTACAGATATAATG+CGG + chr8_2:20975326-20975345 Msa1239350:intron 25.0%
! AATAATAACCTCATTTCCAA+AGG + chr8_2:20975428-20975447 Msa1239350:intron 25.0%
! CAGAATTATATAACAACCTT+TGG - chr8_2:20975447-20975466 None:intergenic 25.0%
! TAATCATAACCTAAACTATG+GGG + chr8_2:20975716-20975735 Msa1239350:intron 25.0%
! AATAGTAACAATATTGGTGA+AGG + chr8_2:20975751-20975770 Msa1239350:intron 25.0%
! ACCATTCCATTTGATAAAAA+TGG + chr8_2:20976027-20976046 Msa1239350:intron 25.0%
!!! TCCATTTTTATCAAATGGAA+TGG - chr8_2:20976031-20976050 None:intergenic 25.0%
!!! CAACATCCATTTTTATCAAA+TGG - chr8_2:20976036-20976055 None:intergenic 25.0%
! ACTAACAAACAACTATACAA+AGG - chr8_2:20976171-20976190 None:intergenic 25.0%
!!! GACACTAATATTTTTAATGG+CGG - chr8_2:20976303-20976322 None:intergenic 25.0%
! AAAAATCCAATGGTTCTTAA+AGG - chr8_2:20976371-20976390 None:intergenic 25.0%
!! CACTCAAAGATATCAATTTT+GGG + chr8_2:20976974-20976993 Msa1239350:intron 25.0%
! AACAAAATGATAGATGACTT+GGG - chr8_2:20977287-20977306 None:intergenic 25.0%
! AAACAAAATGATAGATGACT+TGG - chr8_2:20977288-20977307 None:intergenic 25.0%
! TCATAACTCCAAAAATAATC+AGG + chr8_2:20977351-20977370 Msa1239350:intron 25.0%
! CATAACTCCAAAAATAATCA+GGG + chr8_2:20977352-20977371 Msa1239350:intron 25.0%
! AAAGGTAGAAAAACATCAAA+GGG + chr8_2:20977564-20977583 Msa1239350:intron 25.0%
! AAAGTTACTCATCATTATAG+TGG - chr8_2:20977609-20977628 None:intergenic 25.0%
! TTTACAAAACAGATATCGAA+GGG + chr8_2:20977626-20977645 Msa1239350:intron 25.0%
! TAGAAACAAACAACAAACTA+GGG - chr8_2:20977781-20977800 None:intergenic 25.0%
! TTAGAAACAAACAACAAACT+AGG - chr8_2:20977782-20977801 None:intergenic 25.0%
! TAAAAGAATCCCTCAAAAAT+TGG + chr8_2:20977862-20977881 Msa1239350:intron 25.0%
!!! AGATTTGTTCCAATTTTTGA+GGG - chr8_2:20977874-20977893 None:intergenic 25.0%
GTAAATTCAAGGAAAAGGAT+TGG - chr8_2:20973265-20973284 None:intergenic 30.0%
TTGAGGTAAATTCAAGGAAA+AGG - chr8_2:20973270-20973289 None:intergenic 30.0%
!!! ATGTATCACTACTTTTTTGG+GGG + chr8_2:20973292-20973311 Msa1239350:intron 30.0%
AGGAAAAGAATGGAAGAAAA+GGG - chr8_2:20973369-20973388 None:intergenic 30.0%
AAGGAAAAGAATGGAAGAAA+AGG - chr8_2:20973370-20973389 None:intergenic 30.0%
! TTCCATTCTTTTCCTTTTCT+AGG + chr8_2:20973374-20973393 Msa1239350:intron 30.0%
AGAAAAAATGAACCAAGGTA+CGG - chr8_2:20973422-20973441 None:intergenic 30.0%
AAGGGTGATTATATGAATGA+TGG - chr8_2:20973688-20973707 None:intergenic 30.0%
! CAAATGGACGGAAAATTTTA+AGG - chr8_2:20973707-20973726 None:intergenic 30.0%
! CTTAAAATTTTCCGTCCATT+TGG + chr8_2:20973705-20973724 Msa1239350:intron 30.0%
ACTCAATAAAACCAAATGGA+CGG - chr8_2:20973719-20973738 None:intergenic 30.0%
TACCACTCAATAAAACCAAA+TGG - chr8_2:20973723-20973742 None:intergenic 30.0%
AGGAAAAGGGATGAAAATAT+TGG - chr8_2:20973802-20973821 None:intergenic 30.0%
AGAAAAGAAAAAATGGTGAG+AGG + chr8_2:20973971-20973990 Msa1239350:CDS 30.0%
! TTATTGTTTTCTCACCAAGA+GGG + chr8_2:20974116-20974135 Msa1239350:CDS 30.0%
!! TTTATGAATTTGCTAGCTCT+AGG + chr8_2:20974143-20974162 Msa1239350:CDS 30.0%
TATTTAAGAGGGCTAATAAG+AGG + chr8_2:20974344-20974363 Msa1239350:intron 30.0%
GAAAAGCCACAAAAAATTTC+AGG - chr8_2:20974372-20974391 None:intergenic 30.0%
ATAACTTGATGTTATGGTTG+GGG - chr8_2:20974912-20974931 None:intergenic 30.0%
TATTGATCATACGATATTGC+AGG - chr8_2:20975252-20975271 None:intergenic 30.0%
! TATAACAACCTTTGGAAATG+AGG - chr8_2:20975439-20975458 None:intergenic 30.0%
! AACCATCATTTGTTAGTTTG+AGG + chr8_2:20975835-20975854 Msa1239350:intron 30.0%
!! TTTTGGGTAACATGTGATAT+CGG + chr8_2:20976112-20976131 Msa1239350:intron 30.0%
TGATATCGGAATCAATTAAG+TGG + chr8_2:20976126-20976145 Msa1239350:intron 30.0%
! TTCTAGCTGAAATTTGAACT+TGG + chr8_2:20976338-20976357 Msa1239350:intron 30.0%
TTCAGATCCATTGGATTTAT+AGG + chr8_2:20976416-20976435 Msa1239350:intron 30.0%
!! TTTATAGGTGCTGTGTATTT+TGG + chr8_2:20976431-20976450 Msa1239350:intron 30.0%
! ATTTGTCAGAAAACTGACTT+TGG + chr8_2:20976474-20976493 Msa1239350:intron 30.0%
!! CTCTTGTTATGTCTTAGTTT+TGG + chr8_2:20976584-20976603 Msa1239350:intron 30.0%
!!! TTGTTATGTCTTAGTTTTGG+TGG + chr8_2:20976587-20976606 Msa1239350:intron 30.0%
!!! TGTTATGTCTTAGTTTTGGT+GGG + chr8_2:20976588-20976607 Msa1239350:intron 30.0%
!!! TTGTTTTTAGGGTTTGAAAC+AGG - chr8_2:20976637-20976656 None:intergenic 30.0%
CCAAAATTGATATCTTTGAG+TGG - chr8_2:20976976-20976995 None:intergenic 30.0%
! CCACTCAAAGATATCAATTT+TGG + chr8_2:20976973-20976992 Msa1239350:intron 30.0%
! ATGGTAACCCTGATTATTTT+TGG - chr8_2:20977362-20977381 None:intergenic 30.0%
AAAAATAATCAGGGTTACCA+TGG + chr8_2:20977361-20977380 Msa1239350:intron 30.0%
AATTCACTACTAAATAGCAG+TGG - chr8_2:20977401-20977420 None:intergenic 30.0%
! CCACACATCAAGTATTTTAT+TGG - chr8_2:20977492-20977511 None:intergenic 30.0%
CCAATAAAATACTTGATGTG+TGG + chr8_2:20977489-20977508 Msa1239350:intron 30.0%
ACACTTATAAACACAAGCAA+AGG + chr8_2:20977546-20977565 Msa1239350:intron 30.0%
CAAAGGTAGAAAAACATCAA+AGG + chr8_2:20977563-20977582 Msa1239350:intron 30.0%
AAGGTAGAAAAACATCAAAG+GGG + chr8_2:20977565-20977584 Msa1239350:intron 30.0%
! TACTCATCATTATAGTGGAA+CGG - chr8_2:20977604-20977623 None:intergenic 30.0%
CTTTACAAAACAGATATCGA+AGG + chr8_2:20977625-20977644 Msa1239350:intron 30.0%
TATGAAGAGATTGAGACTTT+GGG - chr8_2:20977683-20977702 None:intergenic 30.0%
ATATGAAGAGATTGAGACTT+TGG - chr8_2:20977684-20977703 None:intergenic 30.0%
!! GAGATTTGTTCCAATTTTTG+AGG - chr8_2:20977875-20977894 None:intergenic 30.0%
! TTAATATGGTGGGGTAAGAT+GGG + chr8_2:20973161-20973180 Msa1239350:five_prime_UTR 35.0%
!! TCAGGTTGATTAATGAGGAA+AGG + chr8_2:20973185-20973204 Msa1239350:exon 35.0%
GTTGATTAATGAGGAAAGGT+AGG + chr8_2:20973189-20973208 Msa1239350:intron 35.0%
TCAAGGAAAAGGATTGGATT+TGG - chr8_2:20973259-20973278 None:intergenic 35.0%
TGCCTAGAAAAGGAAAAGAA+TGG - chr8_2:20973379-20973398 None:intergenic 35.0%
! AATCTGCTTCATTTTGTTGC+TGG + chr8_2:20973464-20973483 Msa1239350:intron 35.0%
!!! GTCCATTTGGTTTTATTGAG+TGG + chr8_2:20973718-20973737 Msa1239350:intron 35.0%
! TTTCATCCCTTTTCCTTACA+AGG + chr8_2:20973806-20973825 Msa1239350:intron 35.0%
! TGTGTTTTTCCTTCTTGGTT+AGG + chr8_2:20973836-20973855 Msa1239350:intron 35.0%
CAAAAAAGTCCTAACCAAGA+AGG - chr8_2:20973848-20973867 None:intergenic 35.0%
ACATTCTCAAAGAGGAGAAA+TGG + chr8_2:20974040-20974059 Msa1239350:CDS 35.0%
ACACAACACTGATAACTCAA+AGG - chr8_2:20974080-20974099 None:intergenic 35.0%
! CTTATTGTTTTCTCACCAAG+AGG + chr8_2:20974115-20974134 Msa1239350:CDS 35.0%
AGATGCAATCACACAATTTG+AGG - chr8_2:20974205-20974224 None:intergenic 35.0%
TAAATCTCTTAGGGTGTGTT+TGG + chr8_2:20974533-20974552 Msa1239350:intron 35.0%
TTATTGTTGGTGTGACCTTA+GGG - chr8_2:20974786-20974805 None:intergenic 35.0%
TTTATTGTTGGTGTGACCTT+AGG - chr8_2:20974787-20974806 None:intergenic 35.0%
TAACTTGATGTTATGGTTGG+GGG - chr8_2:20974911-20974930 None:intergenic 35.0%
TATATAGGGTTGAAGTAGCA+CGG + chr8_2:20974954-20974973 Msa1239350:intron 35.0%
ACACCGCATTATATCTGTAA+TGG - chr8_2:20975332-20975351 None:intergenic 35.0%
GATATTGATCCCCATAGTTT+AGG - chr8_2:20975728-20975747 None:intergenic 35.0%
TGCCTCAAACTAACAAATGA+TGG - chr8_2:20975840-20975859 None:intergenic 35.0%
ATCGTATACCATACGTTGTT+GGG - chr8_2:20975935-20975954 None:intergenic 35.0%
AATCGTATACCATACGTTGT+TGG - chr8_2:20975936-20975955 None:intergenic 35.0%
CATTCAATCAAATCAACCGT+TGG + chr8_2:20975982-20976001 Msa1239350:intron 35.0%
AATCAAATCAACCGTTGGAT+TGG + chr8_2:20975987-20976006 Msa1239350:intron 35.0%
ATCAAATCAACCGTTGGATT+GGG + chr8_2:20975988-20976007 Msa1239350:intron 35.0%
TAAAGATACACCCAATCCAA+CGG - chr8_2:20976001-20976020 None:intergenic 35.0%
GATTGGGTGTATCTTTATAG+AGG + chr8_2:20976004-20976023 Msa1239350:intron 35.0%
AAGTCAAGAGCTAACAGAAA+TGG - chr8_2:20976243-20976262 None:intergenic 35.0%
! TGTTTCTGTTTCAGATCCAT+TGG + chr8_2:20976407-20976426 Msa1239350:intron 35.0%
!!! GTTATGTCTTAGTTTTGGTG+GGG + chr8_2:20976589-20976608 Msa1239350:intron 35.0%
!!! TTATGTCTTAGTTTTGGTGG+GGG + chr8_2:20976590-20976609 Msa1239350:intron 35.0%
! TAGGGTTTGAAACAGGTTAA+GGG - chr8_2:20976630-20976649 None:intergenic 35.0%
! TTAGGGTTTGAAACAGGTTA+AGG - chr8_2:20976631-20976650 None:intergenic 35.0%
TGTCACTCATGCATGTAAAA+AGG - chr8_2:20976866-20976885 None:intergenic 35.0%
AATCAAGCAACCAAATCAAG+TGG + chr8_2:20977520-20977539 Msa1239350:intron 35.0%
ATCAAGCAACCAAATCAAGT+GGG + chr8_2:20977521-20977540 Msa1239350:intron 35.0%
TTGAGACTTTGGGTAGAATT+AGG - chr8_2:20977673-20977692 None:intergenic 35.0%
TCAAGGTTTCATCTGATACA+AGG + chr8_2:20977826-20977845 Msa1239350:intron 35.0%
!!! ACGATTTTGGGTGTTGTTTT+GGG - chr8_2:20977990-20978009 None:intergenic 35.0%
!!! AACGATTTTGGGTGTTGTTT+TGG - chr8_2:20977991-20978010 None:intergenic 35.0%
! AGAAATCGAGCAACGATTTT+GGG - chr8_2:20978002-20978021 None:intergenic 35.0%
! CTTAATATGGTGGGGTAAGA+TGG + chr8_2:20973160-20973179 Msa1239350:five_prime_UTR 40.0%
! TAATATGGTGGGGTAAGATG+GGG + chr8_2:20973162-20973181 Msa1239350:five_prime_UTR 40.0%
TAAAGGGTTGTGCCTAGAAA+AGG - chr8_2:20973389-20973408 None:intergenic 40.0%
GTACGGATAGGAGGAATAAA+GGG - chr8_2:20973405-20973424 None:intergenic 40.0%
AAATGAACCAAGGTACGGAT+AGG - chr8_2:20973417-20973436 None:intergenic 40.0%
GAAGCAGATTTGCACCAAAT+TGG - chr8_2:20973454-20973473 None:intergenic 40.0%
! GGTGTTTAGACCCTTTTTCT+AGG + chr8_2:20973550-20973569 Msa1239350:intron 40.0%
GTATAGAGAACGCAACAAGT+AGG + chr8_2:20974011-20974030 Msa1239350:CDS 40.0%
GGCAAGTAACATTCTCAAAG+AGG + chr8_2:20974032-20974051 Msa1239350:CDS 40.0%
AATTCATAAAGCCTCCCTCT+TGG - chr8_2:20974133-20974152 None:intergenic 40.0%
!!! GAGGAGCCTGAAATTTTTTG+TGG + chr8_2:20974363-20974382 Msa1239350:intron 40.0%
TTAGGGTGTGTTTGGATTGA+GGG + chr8_2:20974541-20974560 Msa1239350:intron 40.0%
TGTGTTTGGATTGAGGGTTT+AGG + chr8_2:20974547-20974566 Msa1239350:intron 40.0%
TTTGGATTGAGGGTTTAGGA+GGG + chr8_2:20974551-20974570 Msa1239350:intron 40.0%
TGATCATACGATATTGCAGG+AGG - chr8_2:20975249-20975268 None:intergenic 40.0%
AAGTGGTTGTCCAATGCTTT+AGG + chr8_2:20976143-20976162 Msa1239350:intron 40.0%
TACAAAGGAGCCTAAAGCAT+TGG - chr8_2:20976156-20976175 None:intergenic 40.0%
! GCTTCACCTTTAAGAACCAT+TGG + chr8_2:20976362-20976381 Msa1239350:intron 40.0%
CACAGCACCTATAAATCCAA+TGG - chr8_2:20976426-20976445 None:intergenic 40.0%
!!! TATGTCTTAGTTTTGGTGGG+GGG + chr8_2:20976591-20976610 Msa1239350:intron 40.0%
TAATCAGGGTTACCATGGTA+TGG + chr8_2:20977366-20977385 Msa1239350:intron 40.0%
TAAGTGTCACCCACTTGATT+TGG - chr8_2:20977533-20977552 None:intergenic 40.0%
ACTGTTAGGATTGAGTCTCT+TGG - chr8_2:20977709-20977728 None:intergenic 40.0%
AATCCTAACAGTGTTTCCCA+AGG + chr8_2:20977717-20977736 Msa1239350:intron 40.0%
GGGATTGTTTGATTCACCTT+GGG - chr8_2:20977736-20977755 None:intergenic 40.0%
TGGGATTGTTTGATTCACCT+TGG - chr8_2:20977737-20977756 None:intergenic 40.0%
AGATGAAACCTTGAGAGAGA+GGG - chr8_2:20977820-20977839 None:intergenic 40.0%
! GAGAAATCGAGCAACGATTT+TGG - chr8_2:20978003-20978022 None:intergenic 40.0%
!! TGGGGTCAGGTTGATTAATG+AGG + chr8_2:20973180-20973199 Msa1239350:exon 45.0%
GGTACGGATAGGAGGAATAA+AGG - chr8_2:20973406-20973425 None:intergenic 45.0%
TATTCCTCCTATCCGTACCT+TGG + chr8_2:20973407-20973426 Msa1239350:intron 45.0%
ATCAGTGTTGTGTGATGCTG+AGG + chr8_2:20974087-20974106 Msa1239350:CDS 45.0%
! TTGTTTTCTCACCAAGAGGG+AGG + chr8_2:20974119-20974138 Msa1239350:CDS 45.0%
CTTAGGGTGTGTTTGGATTG+AGG + chr8_2:20974540-20974559 Msa1239350:intron 45.0%
GTTTGGATTGAGGGTTTAGG+AGG + chr8_2:20974550-20974569 Msa1239350:intron 45.0%
TTGGATTGAGGGTTTAGGAG+GGG + chr8_2:20974552-20974571 Msa1239350:intron 45.0%
TTTGGATGAGGGTTTAGGAG+GGG - chr8_2:20974759-20974778 None:intergenic 45.0%
GTTTGGATGAGGGTTTAGGA+GGG - chr8_2:20974760-20974779 None:intergenic 45.0%
TGTTTGGATGAGGGTTTAGG+AGG - chr8_2:20974761-20974780 None:intergenic 45.0%
GTGTGTTTGGATGAGGGTTT+AGG - chr8_2:20974764-20974783 None:intergenic 45.0%
CTTAGGGTGTGTTTGGATGA+GGG - chr8_2:20974770-20974789 None:intergenic 45.0%
CTTTGACACCCAACAACGTA+TGG + chr8_2:20975924-20975943 Msa1239350:intron 45.0%
AGAAATGGCTGCCTCAACAA+GGG - chr8_2:20976228-20976247 None:intergenic 45.0%
!!! ATGTCTTAGTTTTGGTGGGG+GGG + chr8_2:20976592-20976611 Msa1239350:intron 45.0%
AGCACCAAGAAAAACGTGAG+TGG + chr8_2:20977122-20977141 Msa1239350:intron 45.0%
! TGCACCACTCACGTTTTTCT+TGG - chr8_2:20977129-20977148 None:intergenic 45.0%
TGGAACTACGTACCATACCA+TGG - chr8_2:20977381-20977400 None:intergenic 45.0%
TCACCTTGGGAAACACTGTT+AGG - chr8_2:20977723-20977742 None:intergenic 45.0%
TAGAGAGAGACACTAGGGTT+GGG - chr8_2:20977756-20977775 None:intergenic 45.0%
TTAGAGAGAGACACTAGGGT+TGG - chr8_2:20977757-20977776 None:intergenic 45.0%
GGGTTTAGAGAGAGACACTA+GGG - chr8_2:20977761-20977780 None:intergenic 45.0%
AGGGTTTAGAGAGAGACACT+AGG - chr8_2:20977762-20977781 None:intergenic 45.0%
ATGAAACCTTGAGAGAGAGG+GGG - chr8_2:20977818-20977837 None:intergenic 45.0%
GATGAAACCTTGAGAGAGAG+GGG - chr8_2:20977819-20977838 None:intergenic 45.0%
CAGATGAAACCTTGAGAGAG+AGG - chr8_2:20977821-20977840 None:intergenic 45.0%
TGCTCGATTTCTCCAAATCG+AGG + chr8_2:20978010-20978029 Msa1239350:CDS 45.0%
GATTTCTCCAAATCGAGGCT+CGG + chr8_2:20978015-20978034 Msa1239350:CDS 45.0%
!!! TATTTTTCATTTTTAAATTA+CGG - chr8_2:20974720-20974739 None:intergenic 5.0%
!!! ATTTTTTATGAATATAATAA+TGG - chr8_2:20975900-20975919 None:intergenic 5.0%
!! CTATTAATTAATTAAAAAAA+TGG - chr8_2:20976563-20976582 None:intergenic 5.0%
TGAACCAAGGTACGGATAGG+AGG - chr8_2:20973414-20973433 None:intergenic 50.0%
AGGGTTTAGGAGGGGAATGA+AGG + chr8_2:20974560-20974579 Msa1239350:intron 50.0%
GGGTTTAGGAGGGGAATGAA+GGG + chr8_2:20974561-20974580 Msa1239350:intron 50.0%
GGTTTAGGAGGGGAATGAAG+GGG + chr8_2:20974562-20974581 Msa1239350:intron 50.0%
ATGAGGGTTTAGGAGGGGAA+GGG - chr8_2:20974754-20974773 None:intergenic 50.0%
CCTTAGGGTGTGTTTGGATG+AGG - chr8_2:20974771-20974790 None:intergenic 50.0%
CCTCATCCAAACACACCCTA+AGG + chr8_2:20974768-20974787 Msa1239350:intron 50.0%
GTGTGACCTTAGGGTGTGTT+TGG - chr8_2:20974777-20974796 None:intergenic 50.0%
! GTTATGGTTGGGGGTGCAAA+GGG - chr8_2:20974902-20974921 None:intergenic 50.0%
! TGTTATGGTTGGGGGTGCAA+AGG - chr8_2:20974903-20974922 None:intergenic 50.0%
TGCCTCAACAAGGGCAAGAA+CGG - chr8_2:20976219-20976238 None:intergenic 50.0%
CAGAAATGGCTGCCTCAACA+AGG - chr8_2:20976229-20976248 None:intergenic 50.0%
!!! TGTCTTAGTTTTGGTGGGGG+GGG + chr8_2:20976593-20976612 Msa1239350:intron 50.0%
CGCTCGATTTCTGCAAATCG+TGG + chr8_2:20977940-20977959 Msa1239350:CDS 50.0%
GGTTTAGGAGGGGAAGGGAT+GGG - chr8_2:20974749-20974768 None:intergenic 55.0%
GATGAGGGTTTAGGAGGGGA+AGG - chr8_2:20974755-20974774 None:intergenic 55.0%
CACCGTTCTTGCCCTTGTTG+AGG + chr8_2:20976214-20976233 Msa1239350:intron 55.0%
!!! GTCTTAGTTTTGGTGGGGGG+GGG + chr8_2:20976594-20976613 Msa1239350:intron 55.0%
!!! TCTTAGTTTTGGTGGGGGGG+GGG + chr8_2:20976595-20976614 Msa1239350:intron 55.0%
GAGAGAGGGGGCTGAAACAA+GGG - chr8_2:20977806-20977825 None:intergenic 55.0%
AGAGAGAGGGGGCTGAAACA+AGG - chr8_2:20977807-20977826 None:intergenic 55.0%
TTTCAGCCCCCTCTCTCTCA+AGG + chr8_2:20977809-20977828 Msa1239350:intron 55.0%
TGGTGGGGTAAGATGGGGTC+AGG + chr8_2:20973167-20973186 Msa1239350:five_prime_UTR 60.0%
TAGGAGGGGAAGGGATGGGA+GGG - chr8_2:20974745-20974764 None:intergenic 60.0%
TTAGGAGGGGAAGGGATGGG+AGG - chr8_2:20974746-20974765 None:intergenic 60.0%
GGGTTTAGGAGGGGAAGGGA+TGG - chr8_2:20974750-20974769 None:intergenic 60.0%
!!! CTTAGTTTTGGTGGGGGGGG+GGG + chr8_2:20976596-20976615 Msa1239350:intron 60.0%
!!! TTAGTTTTGGTGGGGGGGGG+GGG + chr8_2:20976597-20976616 Msa1239350:intron 60.0%
!!! TAGTTTTGGTGGGGGGGGGG+GGG + chr8_2:20976598-20976617 Msa1239350:intron 65.0%
! TTTTGGTGGGGGGGGGGGGG+CGG + chr8_2:20976601-20976620 Msa1239350:intron 75.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 20973144 20978043 20973144 ID=Msa1239350;Name=Msa1239350
chr8_2 mRNA 20973144 20978043 20973144 ID=Msa1239350-mRNA-1;Parent=Msa1239350;Name=Msa1239350-mRNA-1;_AED=0.15;_eAED=0.15;_QI=53|0.5|0.66|0.66|0.5|0.33|3|0|108
chr8_2 exon 20973144 20973206 20973144 ID=Msa1239350-mRNA-1:exon:7535;Parent=Msa1239350-mRNA-1
chr8_2 exon 20973963 20974164 20973963 ID=Msa1239350-mRNA-1:exon:7536;Parent=Msa1239350-mRNA-1
chr8_2 exon 20977929 20978043 20977929 ID=Msa1239350-mRNA-1:exon:7537;Parent=Msa1239350-mRNA-1
chr8_2 five_prime_UTR 20973144 20973196 20973144 ID=Msa1239350-mRNA-1:five_prime_utr;Parent=Msa1239350-mRNA-1
chr8_2 CDS 20973197 20973206 20973197 ID=Msa1239350-mRNA-1:cds;Parent=Msa1239350-mRNA-1
chr8_2 CDS 20973963 20974164 20973963 ID=Msa1239350-mRNA-1:cds;Parent=Msa1239350-mRNA-1
chr8_2 CDS 20977929 20978043 20977929 ID=Msa1239350-mRNA-1:cds;Parent=Msa1239350-mRNA-1
Gene Sequence

>Msa1239350

ATGAGGAAAGCAGAGAAAAGAAAAGAAAAAATGGTGAGAGGAAAGACACAAATGAAGCGTATAGAGAACGCAACAAGTAGGCAAGTAACATTCTCAAAGAGGAGAAATGGTTTGTTGAAGAAAGCCTTTGAGTTATCAGTGTTGTGTGATGCTGAGGTTGCTCTTATTGTTTTCTCACCAAGAGGGAGGCTTTATGAATTTGCTAGCTCTAGCGCAAAATCGACGCTCGATTTCTGCAAATCGTGGCTCGATTTTCGTAGAAGCAAAACTCCCAAAACAACACCCAAAATCGTTGCTCGATTTCTCCAAATCGAGGCTCGGTTTTAA
Protein sequence

>Msa1239350

MRKAEKRKEKMVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASSSAKSTLDFCKSWLDFRRSKTPKTTPKIVARFLQIEARF*