Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1240040 | XP_024628367.1 | 95.987 | 299 | 6 | 3 | 1 | 298 | 35 | 328 | 0.0 | 591 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1240040 | sp|Q9SVY1|ZWIP2_ARATH | 68.033 | 244 | 51 | 1 | 81 | 297 | 122 | 365 | 2.24e-117 | 345 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1240040 | A0A396GKT8 | 95.987 | 299 | 6 | 3 | 1 | 298 | 35 | 328 | 0.0 | 591 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1240040 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1240040 | MtrunA17_Chr8g0352011 | 95.987 | 299 | 6 | 3 | 1 | 298 | 35 | 328 | 0.0 | 591 |
| Msa1240040 | MtrunA17_Chr1g0173841 | 63.158 | 285 | 94 | 3 | 24 | 297 | 92 | 376 | 4.57e-128 | 370 |
| Msa1240040 | MtrunA17_Chr7g0258011 | 64.057 | 281 | 85 | 3 | 24 | 297 | 66 | 337 | 2.96e-125 | 361 |
| Msa1240040 | MtrunA17_Chr2g0328921 | 66.423 | 274 | 74 | 7 | 25 | 297 | 44 | 300 | 1.09e-122 | 353 |
| Msa1240040 | MtrunA17_Chr5g0422571 | 63.393 | 224 | 61 | 3 | 76 | 296 | 57 | 262 | 1.32e-103 | 304 |
| Msa1240040 | MtrunA17_Chr2g0321291 | 60.669 | 239 | 79 | 5 | 66 | 297 | 65 | 295 | 1.49e-103 | 305 |
| Msa1240040 | MtrunA17_Chr4g0026521 | 82.237 | 152 | 27 | 0 | 133 | 284 | 115 | 266 | 7.85e-101 | 297 |
| Msa1240040 | MtrunA17_Chr4g0053341 | 61.925 | 239 | 63 | 3 | 49 | 287 | 15 | 225 | 3.50e-98 | 288 |
| Msa1240040 | MtrunA17_Chr1g0198651 | 74.233 | 163 | 39 | 1 | 133 | 292 | 99 | 261 | 6.89e-94 | 279 |
| Msa1240040 | MtrunA17_Chr1g0200421 | 34.804 | 204 | 117 | 5 | 91 | 280 | 186 | 387 | 3.47e-27 | 110 |
| Msa1240040 | MtrunA17_Chr2g0320341 | 37.584 | 149 | 85 | 4 | 143 | 284 | 238 | 385 | 2.90e-23 | 98.6 |
| Msa1240040 | MtrunA17_Chr1g0151351 | 36.620 | 142 | 79 | 5 | 141 | 280 | 62 | 194 | 6.30e-21 | 92.4 |
| Msa1240040 | MtrunA17_Chr8g0382121 | 32.558 | 172 | 110 | 4 | 113 | 280 | 91 | 260 | 1.15e-20 | 90.1 |
| Msa1240040 | MtrunA17_Chr1g0191991 | 35.519 | 183 | 92 | 8 | 122 | 296 | 59 | 223 | 1.24e-20 | 91.7 |
| Msa1240040 | MtrunA17_Chr1g0163001 | 29.902 | 204 | 114 | 7 | 97 | 280 | 1 | 195 | 1.26e-20 | 91.7 |
| Msa1240040 | MtrunA17_Chr1g0162971 | 38.129 | 139 | 76 | 5 | 143 | 280 | 64 | 193 | 1.34e-20 | 91.3 |
| Msa1240040 | MtrunA17_Chr1g0210821 | 36.301 | 146 | 83 | 5 | 136 | 280 | 60 | 196 | 1.98e-20 | 91.3 |
| Msa1240040 | MtrunA17_Chr7g0268961 | 33.929 | 168 | 85 | 8 | 137 | 296 | 33 | 182 | 2.33e-20 | 90.9 |
| Msa1240040 | MtrunA17_Chr4g0029521 | 37.857 | 140 | 76 | 5 | 143 | 280 | 61 | 191 | 2.65e-20 | 90.9 |
| Msa1240040 | MtrunA17_Chr1g0199101 | 36.735 | 147 | 81 | 6 | 136 | 280 | 63 | 199 | 3.09e-20 | 90.5 |
| Msa1240040 | MtrunA17_Chr1g0185121 | 36.620 | 142 | 79 | 5 | 141 | 280 | 61 | 193 | 6.29e-20 | 89.4 |
| Msa1240040 | MtrunA17_Chr2g0326381 | 37.410 | 139 | 78 | 4 | 143 | 280 | 55 | 185 | 7.34e-20 | 89.0 |
| Msa1240040 | MtrunA17_Chr8g0342421 | 35.252 | 139 | 80 | 4 | 143 | 280 | 85 | 214 | 7.51e-20 | 89.4 |
| Msa1240040 | MtrunA17_Chr7g0263941 | 36.735 | 147 | 81 | 6 | 136 | 280 | 50 | 186 | 1.45e-19 | 88.2 |
| Msa1240040 | MtrunA17_Chr2g0330171 | 34.247 | 146 | 86 | 4 | 136 | 280 | 62 | 198 | 1.46e-19 | 88.6 |
| Msa1240040 | MtrunA17_Chr8g0373541 | 31.579 | 209 | 117 | 7 | 96 | 296 | 3 | 193 | 4.27e-19 | 87.4 |
| Msa1240040 | MtrunA17_Chr1g0181381 | 32.919 | 161 | 91 | 5 | 136 | 295 | 54 | 198 | 4.95e-19 | 87.0 |
| Msa1240040 | MtrunA17_Chr3g0123941 | 38.158 | 152 | 82 | 7 | 151 | 298 | 139 | 282 | 1.63e-18 | 84.3 |
| Msa1240040 | MtrunA17_Chr2g0324991 | 35.915 | 142 | 81 | 5 | 136 | 275 | 8 | 141 | 3.03e-18 | 79.7 |
| Msa1240040 | MtrunA17_Chr4g0040571 | 33.562 | 146 | 87 | 4 | 136 | 280 | 55 | 191 | 8.54e-18 | 83.2 |
| Msa1240040 | MtrunA17_Chr3g0141431 | 33.333 | 138 | 82 | 4 | 141 | 276 | 43 | 172 | 2.26e-16 | 79.0 |
| Msa1240040 | MtrunA17_Chr6g0479921 | 31.034 | 145 | 90 | 5 | 141 | 283 | 50 | 186 | 9.56e-14 | 71.2 |
| Msa1240040 | MtrunA17_Chr8g0375521 | 32.394 | 142 | 85 | 5 | 141 | 279 | 48 | 181 | 1.03e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1240040 | AT3G57670.1 | 68.033 | 244 | 51 | 1 | 81 | 297 | 122 | 365 | 2.28e-118 | 345 |
| Msa1240040 | AT1G51220.1 | 57.576 | 297 | 92 | 5 | 14 | 297 | 51 | 326 | 5.47e-115 | 335 |
| Msa1240040 | AT3G20880.1 | 57.823 | 294 | 99 | 6 | 18 | 295 | 119 | 403 | 2.10e-112 | 331 |
| Msa1240040 | AT1G08290.1 | 54.412 | 272 | 104 | 5 | 44 | 297 | 63 | 332 | 5.01e-97 | 289 |
| Msa1240040 | AT1G13290.1 | 64.455 | 211 | 52 | 4 | 81 | 289 | 54 | 243 | 5.21e-96 | 285 |
| Msa1240040 | AT1G34790.1 | 64.352 | 216 | 69 | 3 | 81 | 295 | 83 | 291 | 1.64e-95 | 284 |
| Msa1240040 | AT1G34370.2 | 32.407 | 216 | 128 | 5 | 81 | 280 | 169 | 382 | 9.15e-28 | 112 |
| Msa1240040 | AT1G34370.1 | 32.407 | 216 | 128 | 5 | 81 | 280 | 169 | 382 | 9.15e-28 | 112 |
| Msa1240040 | AT1G34370.3 | 39.456 | 147 | 78 | 4 | 143 | 280 | 28 | 172 | 8.66e-27 | 106 |
| Msa1240040 | AT5G22890.1 | 38.926 | 149 | 83 | 4 | 143 | 284 | 211 | 358 | 5.16e-24 | 100 |
| Msa1240040 | AT1G55110.3 | 38.028 | 142 | 77 | 6 | 141 | 280 | 84 | 216 | 3.57e-21 | 93.6 |
| Msa1240040 | AT1G55110.1 | 38.028 | 142 | 77 | 6 | 141 | 280 | 84 | 216 | 3.57e-21 | 93.6 |
| Msa1240040 | AT1G55110.2 | 38.028 | 142 | 77 | 6 | 141 | 280 | 84 | 216 | 3.57e-21 | 93.6 |
| Msa1240040 | AT2G02080.1 | 36.879 | 141 | 79 | 4 | 141 | 280 | 75 | 206 | 1.05e-20 | 92.4 |
| Msa1240040 | AT2G02080.4 | 36.879 | 141 | 79 | 4 | 141 | 280 | 75 | 206 | 1.05e-20 | 92.4 |
| Msa1240040 | AT2G02080.5 | 36.879 | 141 | 79 | 4 | 141 | 280 | 75 | 206 | 1.05e-20 | 92.4 |
| Msa1240040 | AT2G02080.3 | 36.879 | 141 | 79 | 4 | 141 | 280 | 75 | 206 | 1.05e-20 | 92.4 |
| Msa1240040 | AT2G02070.2 | 36.301 | 146 | 83 | 4 | 136 | 280 | 68 | 204 | 1.89e-20 | 91.7 |
| Msa1240040 | AT2G02070.1 | 36.301 | 146 | 83 | 4 | 136 | 280 | 68 | 204 | 1.89e-20 | 91.7 |
| Msa1240040 | AT1G14580.3 | 32.787 | 183 | 100 | 6 | 112 | 280 | 46 | 219 | 2.46e-20 | 91.3 |
| Msa1240040 | AT1G14580.1 | 32.787 | 183 | 100 | 6 | 112 | 280 | 32 | 205 | 2.47e-20 | 90.9 |
| Msa1240040 | AT1G14580.2 | 32.787 | 183 | 100 | 6 | 112 | 280 | 32 | 205 | 2.47e-20 | 90.9 |
| Msa1240040 | AT5G03150.1 | 34.839 | 155 | 84 | 5 | 142 | 295 | 75 | 213 | 3.07e-20 | 90.9 |
| Msa1240040 | AT2G02080.6 | 36.957 | 138 | 77 | 4 | 144 | 280 | 1 | 129 | 6.42e-20 | 89.7 |
| Msa1240040 | AT2G02080.2 | 36.957 | 138 | 77 | 4 | 144 | 280 | 1 | 129 | 6.42e-20 | 89.7 |
| Msa1240040 | AT5G66730.1 | 35.915 | 142 | 79 | 5 | 141 | 280 | 53 | 184 | 2.98e-19 | 88.2 |
| Msa1240040 | AT3G45260.2 | 36.691 | 139 | 79 | 4 | 143 | 280 | 62 | 192 | 1.37e-18 | 85.9 |
| Msa1240040 | AT3G45260.1 | 36.691 | 139 | 79 | 4 | 143 | 280 | 62 | 192 | 1.37e-18 | 85.9 |
| Msa1240040 | AT1G03840.2 | 34.932 | 146 | 85 | 5 | 136 | 280 | 55 | 191 | 2.09e-18 | 85.5 |
| Msa1240040 | AT1G03840.1 | 34.932 | 146 | 85 | 5 | 136 | 280 | 57 | 193 | 2.16e-18 | 85.5 |
| Msa1240040 | AT5G60470.1 | 36.029 | 136 | 77 | 4 | 143 | 276 | 58 | 185 | 2.32e-18 | 85.1 |
| Msa1240040 | AT5G44160.1 | 35.252 | 139 | 80 | 4 | 143 | 280 | 60 | 189 | 2.33e-18 | 85.5 |
| Msa1240040 | AT5G60470.2 | 35.294 | 136 | 78 | 4 | 143 | 276 | 67 | 194 | 2.51e-18 | 85.1 |
| Msa1240040 | AT5G44160.2 | 35.252 | 139 | 80 | 4 | 143 | 280 | 21 | 150 | 2.57e-18 | 85.1 |
| Msa1240040 | AT5G60470.3 | 35.294 | 136 | 78 | 4 | 143 | 276 | 63 | 190 | 2.96e-18 | 85.1 |
| Msa1240040 | AT3G13810.4 | 34.014 | 147 | 86 | 5 | 136 | 280 | 86 | 223 | 1.11e-17 | 83.6 |
| Msa1240040 | AT3G13810.1 | 34.014 | 147 | 86 | 5 | 136 | 280 | 86 | 223 | 1.11e-17 | 83.6 |
| Msa1240040 | AT3G13810.5 | 34.014 | 147 | 86 | 5 | 136 | 280 | 81 | 218 | 1.29e-17 | 83.2 |
| Msa1240040 | AT3G13810.2 | 34.014 | 147 | 86 | 5 | 136 | 280 | 87 | 224 | 1.52e-17 | 83.2 |
| Msa1240040 | AT3G13810.6 | 34.014 | 147 | 86 | 5 | 136 | 280 | 67 | 204 | 1.56e-17 | 82.8 |
| Msa1240040 | AT4G02670.2 | 32.919 | 161 | 91 | 6 | 136 | 295 | 71 | 215 | 1.67e-17 | 82.4 |
| Msa1240040 | AT3G50700.1 | 33.544 | 158 | 85 | 6 | 141 | 296 | 55 | 194 | 1.68e-17 | 82.8 |
| Msa1240040 | AT4G02670.1 | 32.919 | 161 | 91 | 6 | 136 | 295 | 69 | 213 | 1.72e-17 | 82.4 |
| Msa1240040 | AT3G13810.3 | 34.014 | 147 | 86 | 5 | 136 | 280 | 73 | 210 | 1.75e-17 | 82.8 |
| Msa1240040 | AT1G25250.1 | 30.935 | 139 | 86 | 5 | 141 | 276 | 31 | 162 | 5.70e-14 | 72.0 |
| Msa1240040 | AT1G25250.3 | 28.272 | 191 | 116 | 8 | 89 | 276 | 13 | 185 | 5.92e-14 | 72.0 |
| Msa1240040 | AT1G68130.1 | 31.655 | 139 | 84 | 5 | 141 | 276 | 62 | 192 | 2.93e-13 | 70.1 |
| Msa1240040 | AT2G01940.1 | 30.935 | 139 | 85 | 5 | 141 | 276 | 65 | 195 | 5.63e-12 | 66.2 |
Find 63 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTACTGTTGCACTACAAAT+AGG | 0.241591 | 8_2:-22274240 | Msa1240040:CDS |
| AGTAATTCTTCTTCTGATCT+TGG | 0.279002 | 8_2:-22274210 | Msa1240040:CDS |
| GGTTATGGTCATGGTGCTTT+TGG | 0.295781 | 8_2:-22271858 | Msa1240040:CDS |
| CATATTAAAGCCTTTGGTTA+TGG | 0.310320 | 8_2:-22271873 | Msa1240040:CDS |
| AGGAGGAGAAGGAGGATTCA+TGG | 0.322930 | 8_2:+22274434 | None:intergenic |
| AGAAGAATTGTGGCAAAATA+TGG | 0.329283 | 8_2:-22271944 | Msa1240040:CDS |
| TCTCATCAAACCAACATGTT+TGG | 0.335594 | 8_2:-22274495 | Msa1240040:exon |
| AAGGGGCCAGATTCTCTAAA+AGG | 0.343680 | 8_2:-22272170 | Msa1240040:CDS |
| AAAGACCATATTAAAGCCTT+TGG | 0.344662 | 8_2:-22271879 | Msa1240040:CDS |
| TTCTGAACATCAACAACCTT+TGG | 0.351430 | 8_2:-22274127 | Msa1240040:CDS |
| AGGATTCATGGTGGAGGATG+AGG | 0.378060 | 8_2:+22274446 | None:intergenic |
| CATAACCAAAGGCTTTAATA+TGG | 0.384327 | 8_2:+22271874 | None:intergenic |
| CTCATCAAATTGCATAGAAA+TGG | 0.392609 | 8_2:-22274175 | Msa1240040:CDS |
| TTACTGTTGCACTACAAATA+GGG | 0.402089 | 8_2:-22274239 | Msa1240040:CDS |
| CTTCTTCTGATCTTGGATCA+AGG | 0.402872 | 8_2:-22274203 | Msa1240040:CDS |
| CAACAGATACAACAATCTTC+AGG | 0.407884 | 8_2:-22274007 | Msa1240040:intron |
| CATTTGCAGTGAAAGGTGAT+TGG | 0.425078 | 8_2:-22271977 | Msa1240040:CDS |
| CATGGTGGAGGATGAGGAGG+AGG | 0.440334 | 8_2:+22274452 | None:intergenic |
| ACACCTTCTCAAATTCTCAT+TGG | 0.440374 | 8_2:-22274069 | Msa1240040:CDS |
| TGAATTAGAAGACAAGAGAA+TGG | 0.451445 | 8_2:-22274313 | Msa1240040:CDS |
| CCATGCTATTGTTGTGCACC+AGG | 0.454587 | 8_2:-22272119 | Msa1240040:CDS |
| TGAACAACAAGGGTCAGTAT+TGG | 0.475729 | 8_2:-22274098 | Msa1240040:CDS |
| AAAGCCTTTGGTTATGGTCA+TGG | 0.479825 | 8_2:-22271867 | Msa1240040:CDS |
| TTTGTTGTTGATGATTTATG+AGG | 0.483129 | 8_2:+22274376 | None:intergenic |
| TTCTGATCTTGGATCAAGGA+TGG | 0.488172 | 8_2:-22274199 | Msa1240040:CDS |
| TGAGAGGCTTTGCTCTAGGA+TGG | 0.497344 | 8_2:+22272078 | None:intergenic |
| TCTTTGAGAGGCTTTGCTCT+AGG | 0.513133 | 8_2:+22272074 | None:intergenic |
| ATGAGAATTTGAGAAGGTGT+TGG | 0.518525 | 8_2:+22274072 | None:intergenic |
| AGAAGGAGGATTCATGGTGG+AGG | 0.523835 | 8_2:+22274440 | None:intergenic |
| TAGATGCATATGTGGGGACA+TGG | 0.526441 | 8_2:-22272206 | Msa1240040:CDS |
| AGAGGAAGAGCTTCTCTAAG+AGG | 0.528799 | 8_2:+22274414 | None:intergenic |
| CCTTATATGTGTAGAAAATG+TGG | 0.531273 | 8_2:-22272005 | Msa1240040:CDS |
| ATTCATGGTGGAGGATGAGG+AGG | 0.531814 | 8_2:+22274449 | None:intergenic |
| AGATCAGAAGAAGAATTACT+AGG | 0.534223 | 8_2:+22274213 | None:intergenic |
| CATGGATCTCAATACAGAAA+GGG | 0.536031 | 8_2:-22272188 | Msa1240040:CDS |
| AGGCTTAGTTTGTTAATGAG+AGG | 0.538138 | 8_2:+22274396 | None:intergenic |
| GCTTCTCTAAGAGGAGGAGA+AGG | 0.538140 | 8_2:+22274423 | None:intergenic |
| AGATTGAATTCCAAACATGT+TGG | 0.541760 | 8_2:+22274485 | None:intergenic |
| TTGCAAGAAGAAGATGAAGT+AGG | 0.553002 | 8_2:-22271825 | None:intergenic |
| GACAAGAGAATGGAAAGGCA+TGG | 0.561442 | 8_2:-22274303 | Msa1240040:CDS |
| TGCAAGAAGAAGATGAAGTA+GGG | 0.562185 | 8_2:-22271824 | None:intergenic |
| AGGAGAAGGAGGATTCATGG+TGG | 0.564100 | 8_2:+22274437 | None:intergenic |
| ACACATTATAAGAGAAAGCA+TGG | 0.564164 | 8_2:-22272035 | Msa1240040:CDS |
| TTGTTGTTCAACTTATCCAA+AGG | 0.565952 | 8_2:+22274111 | None:intergenic |
| GGTAGCCTTAGCATTGCTGT+TGG | 0.572264 | 8_2:+22272140 | None:intergenic |
| TCTCTAAGAGGAGGAGAAGG+AGG | 0.574547 | 8_2:+22274426 | None:intergenic |
| TCAATGTTGTGCTTGCAACC+TGG | 0.575492 | 8_2:+22272101 | None:intergenic |
| CACAACCAACAGCAATGCTA+AGG | 0.579227 | 8_2:-22272145 | Msa1240040:CDS |
| ATGGTGGAGGATGAGGAGGA+GGG | 0.583723 | 8_2:+22274453 | None:intergenic |
| AGAGTTCTAAAATCTTTGAG+AGG | 0.584007 | 8_2:+22272062 | None:intergenic |
| ACATGGATCTCAATACAGAA+AGG | 0.588548 | 8_2:-22272189 | Msa1240040:CDS |
| AAAATATGGTATTGTTTGTG+TGG | 0.602783 | 8_2:-22271930 | Msa1240040:CDS |
| TAGAAGACAAGAGAATGGAA+AGG | 0.616360 | 8_2:-22274308 | Msa1240040:CDS |
| GGCAAATCATTTGCAGTGAA+AGG | 0.616551 | 8_2:-22271984 | Msa1240040:CDS |
| ATGGATCTCAATACAGAAAG+GGG | 0.624745 | 8_2:-22272187 | Msa1240040:CDS |
| AGAACACATGAGAAGAATTG+TGG | 0.625082 | 8_2:-22271954 | Msa1240040:CDS |
| ACAGGACATGAGAATTGTGT+AGG | 0.627887 | 8_2:+22274045 | None:intergenic |
| GGAAGAGCTTCTCTAAGAGG+AGG | 0.638851 | 8_2:+22274417 | None:intergenic |
| TTGGATAAGTTGAACAACAA+GGG | 0.662388 | 8_2:-22274108 | Msa1240040:CDS |
| TTTGGATAAGTTGAACAACA+AGG | 0.664103 | 8_2:-22274109 | Msa1240040:CDS |
| AGCACCATGACCATAACCAA+AGG | 0.668968 | 8_2:+22271863 | None:intergenic |
| CCTGGTGCACAACAATAGCA+TGG | 0.670992 | 8_2:+22272119 | None:intergenic |
| GGACCAATGAGAATTTGAGA+AGG | 0.682153 | 8_2:+22274066 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTTTTTATTTTTTT+AGG | - | chr8_2:22273242-22273261 | Msa1240040:intron | 0.0% |
| !!! | TATTTTCTTTTCTAAATTTA+GGG | + | chr8_2:22272461-22272480 | None:intergenic | 10.0% |
| !!! | TTATTTTCTTTTCTAAATTT+AGG | + | chr8_2:22272462-22272481 | None:intergenic | 10.0% |
| !! | TATAATCTGAAAAATAAATA+TGG | - | chr8_2:22273660-22273679 | Msa1240040:intron | 10.0% |
| !!! | AATTTTTTTATTTTTTGAAG+AGG | + | chr8_2:22273790-22273809 | None:intergenic | 10.0% |
| !!! | AAATTTGTTATTTCTTTTAT+AGG | - | chr8_2:22273805-22273824 | Msa1240040:intron | 10.0% |
| !! | AAATAAAATATATAAACCAT+GGG | + | chr8_2:22273840-22273859 | None:intergenic | 10.0% |
| !! | TAAATAAAATATATAAACCA+TGG | + | chr8_2:22273841-22273860 | None:intergenic | 10.0% |
| !! | AATAATAACTAAAAAGATTA+TGG | - | chr8_2:22273944-22273963 | Msa1240040:intron | 10.0% |
| !!! | ATTTTCTTTTCTAAATTTAG+GGG | + | chr8_2:22272460-22272479 | None:intergenic | 15.0% |
| !! | TAGAAATATAATTAAAACCT+TGG | - | chr8_2:22273030-22273049 | Msa1240040:intron | 15.0% |
| !!! | TTTTTTATTTTTTTAGGAGA+AGG | - | chr8_2:22273248-22273267 | Msa1240040:intron | 15.0% |
| !!! | TTTTGTTACTTTCTTTTTTT+AGG | - | chr8_2:22273299-22273318 | Msa1240040:intron | 15.0% |
| !!! | TTTGTTACTTTCTTTTTTTA+GGG | - | chr8_2:22273300-22273319 | Msa1240040:intron | 15.0% |
| !! | ATTATGATGATTGTATATTT+GGG | + | chr8_2:22273386-22273405 | None:intergenic | 15.0% |
| !! | AATTATGATGATTGTATATT+TGG | + | chr8_2:22273387-22273406 | None:intergenic | 15.0% |
| !! | ATAATTTAGTAGTTAATTGA+TGG | - | chr8_2:22274077-22274096 | Msa1240040:CDS | 15.0% |
| !! | TAATTTAGTAGTTAATTGAT+GGG | - | chr8_2:22274078-22274097 | Msa1240040:CDS | 15.0% |
| !!! | AAGTTTTCAAGATCTAAATA+TGG | + | chr8_2:22272353-22272372 | None:intergenic | 20.0% |
| !! | TTAGAACAATTTCTACAAAA+GGG | + | chr8_2:22272938-22272957 | None:intergenic | 20.0% |
| !! | ATTAGAACAATTTCTACAAA+AGG | + | chr8_2:22272939-22272958 | None:intergenic | 20.0% |
| !! | AATATAATTAAAACCTTGGA+TGG | - | chr8_2:22273034-22273053 | Msa1240040:intron | 20.0% |
| !! | TGTGTGAATAATAAAAAAGT+AGG | + | chr8_2:22273097-22273116 | None:intergenic | 20.0% |
| !!! | AAACCAAGTATTAGTATTTT+TGG | + | chr8_2:22273157-22273176 | None:intergenic | 20.0% |
| !!! | TTTCTTTAGTTACTGTTTTT+TGG | - | chr8_2:22273219-22273238 | Msa1240040:intron | 20.0% |
| !! | TATAATTTAGACATAACCAT+GGG | + | chr8_2:22273636-22273655 | None:intergenic | 20.0% |
| !!! | CATGACTTTATATTTAAGTT+AGG | - | chr8_2:22273687-22273706 | Msa1240040:intron | 20.0% |
| !!! | GTTAGGTTTTTTTTTTTTGA+AGG | - | chr8_2:22273704-22273723 | Msa1240040:intron | 20.0% |
| !!! | TTTGAAGGAATATTTAAGTT+AGG | - | chr8_2:22273719-22273738 | Msa1240040:intron | 20.0% |
| !!! | ATTTTGTAACAAGAAAACTA+AGG | - | chr8_2:22273994-22274013 | Msa1240040:intron | 20.0% |
| !!! | TTTGTTGTTGATGATTTATG+AGG | + | chr8_2:22271952-22271971 | None:intergenic | 25.0% |
| ! | TGAGTGTTAAAAATGTTTGA+GGG | + | chr8_2:22271980-22271999 | None:intergenic | 25.0% |
| ! | TTGAGTGTTAAAAATGTTTG+AGG | + | chr8_2:22271981-22272000 | None:intergenic | 25.0% |
| ! | GATTCTTGATACACATATTT+AGG | + | chr8_2:22272393-22272412 | None:intergenic | 25.0% |
| ! | ATGTGTATCAAGAATCATAA+TGG | - | chr8_2:22272397-22272416 | Msa1240040:intron | 25.0% |
| ! | ATGTGTATCAAGAATCATAA+TGG | - | chr8_2:22272397-22272416 | Msa1240040:intron | 25.0% |
| ! | AGGAAAAAAAACATGCAAAA+GGG | + | chr8_2:22272538-22272557 | None:intergenic | 25.0% |
| ! | AAGGAAAAAAAACATGCAAA+AGG | + | chr8_2:22272539-22272558 | None:intergenic | 25.0% |
| !! | GATATTTGAAACTAAGAAGA+AGG | + | chr8_2:22272558-22272577 | None:intergenic | 25.0% |
| ! | ATTTCTCAGACATCAATTAA+AGG | + | chr8_2:22272883-22272902 | None:intergenic | 25.0% |
| ! | TTCATATTCATGTGCTAATT+TGG | + | chr8_2:22273127-22273146 | None:intergenic | 25.0% |
| ! | AAATTAGCACATGAATATGA+AGG | - | chr8_2:22273126-22273145 | Msa1240040:intron | 25.0% |
| !!! | AGGTAGTGTTCTTTTTTTTT+TGG | - | chr8_2:22273268-22273287 | Msa1240040:intron | 25.0% |
| ! | AAGATGCACATAAAAATTCA+AGG | + | chr8_2:22273344-22273363 | None:intergenic | 25.0% |
| ! | GAACTTATTGTAAGTAAGTT+TGG | - | chr8_2:22273470-22273489 | Msa1240040:intron | 25.0% |
| ! | AAAAACTCATCACTAATTCA+CGG | - | chr8_2:22273499-22273518 | Msa1240040:intron | 25.0% |
| ! | CTATAATTTAGACATAACCA+TGG | + | chr8_2:22273637-22273656 | None:intergenic | 25.0% |
| ! | TATGAATGATTATGCCATTA+TGG | - | chr8_2:22273871-22273890 | Msa1240040:intron | 25.0% |
| ! | ATGAATGATTATGCCATTAT+GGG | - | chr8_2:22273872-22273891 | Msa1240040:intron | 25.0% |
| ! | AAAATATGGTATTGTTTGTG+TGG | - | chr8_2:22274395-22274414 | Msa1240040:CDS | 25.0% |
| !! | GCTCAGATTTTAAACATAAA+AGG | - | chr8_2:22274417-22274436 | Msa1240040:CDS | 25.0% |
| AGATTGAATTCCAAACATGT+TGG | + | chr8_2:22271843-22271862 | None:intergenic | 30.0% | |
| TGAATTAGAAGACAAGAGAA+TGG | - | chr8_2:22272012-22272031 | Msa1240040:CDS | 30.0% | |
| TTACTGTTGCACTACAAATA+GGG | - | chr8_2:22272086-22272105 | Msa1240040:CDS | 30.0% | |
| AGATCAGAAGAAGAATTACT+AGG | + | chr8_2:22272115-22272134 | None:intergenic | 30.0% | |
| AGTAATTCTTCTTCTGATCT+TGG | - | chr8_2:22272115-22272134 | Msa1240040:CDS | 30.0% | |
| CTCATCAAATTGCATAGAAA+TGG | - | chr8_2:22272150-22272169 | Msa1240040:CDS | 30.0% | |
| ! | TTGTTGTTCAACTTATCCAA+AGG | + | chr8_2:22272217-22272236 | None:intergenic | 30.0% |
| ! | TTTGGATAAGTTGAACAACA+AGG | - | chr8_2:22272216-22272235 | Msa1240040:intron | 30.0% |
| ! | TTGGATAAGTTGAACAACAA+GGG | - | chr8_2:22272217-22272236 | Msa1240040:intron | 30.0% |
| AAAAACATGCAAAAGGGATA+TGG | + | chr8_2:22272532-22272551 | None:intergenic | 30.0% | |
| !!! | TTTTCATTGATTTGCAGTAC+TGG | + | chr8_2:22272722-22272741 | None:intergenic | 30.0% |
| GTCTGTGATAAGATCATATA+TGG | - | chr8_2:22272855-22272874 | Msa1240040:intron | 30.0% | |
| ! | TTGCTAACTTGTCTTTATCA+TGG | - | chr8_2:22272968-22272987 | Msa1240040:intron | 30.0% |
| ! | CATTGTTTAATTTCCATCCA+AGG | + | chr8_2:22273050-22273069 | None:intergenic | 30.0% |
| ! | TGTGTCTGTCTTCAATTTTA+TGG | - | chr8_2:22273182-22273201 | Msa1240040:intron | 30.0% |
| CATAAAAATTCAAGGAATGG+TGG | + | chr8_2:22273336-22273355 | None:intergenic | 30.0% | |
| GCACATAAAAATTCAAGGAA+TGG | + | chr8_2:22273339-22273358 | None:intergenic | 30.0% | |
| TTGCAACTAACGTACAAATT+TGG | + | chr8_2:22273445-22273464 | None:intergenic | 30.0% | |
| ! | ATTGTAAGTAAGTTTGGTGA+AGG | - | chr8_2:22273476-22273495 | Msa1240040:intron | 30.0% |
| TTGTAACAAGAAAACTAAGG+AGG | - | chr8_2:22273997-22274016 | Msa1240040:intron | 30.0% | |
| TGTAACAAGAAAACTAAGGA+GGG | - | chr8_2:22273998-22274017 | Msa1240040:intron | 30.0% | |
| !! | TGGATTTTTAGATGCATATG+TGG | - | chr8_2:22274111-22274130 | Msa1240040:CDS | 30.0% |
| !! | GGATTTTTAGATGCATATGT+GGG | - | chr8_2:22274112-22274131 | Msa1240040:CDS | 30.0% |
| !! | GATTTTTAGATGCATATGTG+GGG | - | chr8_2:22274113-22274132 | Msa1240040:CDS | 30.0% |
| !! | AGAGTTCTAAAATCTTTGAG+AGG | + | chr8_2:22274266-22274285 | None:intergenic | 30.0% |
| ACACATTATAAGAGAAAGCA+TGG | - | chr8_2:22274290-22274309 | Msa1240040:CDS | 30.0% | |
| ! | CCACATTTTCTACACATATA+AGG | + | chr8_2:22274323-22274342 | None:intergenic | 30.0% |
| CCTTATATGTGTAGAAAATG+TGG | - | chr8_2:22274320-22274339 | Msa1240040:CDS | 30.0% | |
| AGAAGAATTGTGGCAAAATA+TGG | - | chr8_2:22274381-22274400 | Msa1240040:CDS | 30.0% | |
| AAAGACCATATTAAAGCCTT+TGG | - | chr8_2:22274446-22274465 | Msa1240040:CDS | 30.0% | |
| ! | CATAACCAAAGGCTTTAATA+TGG | + | chr8_2:22274454-22274473 | None:intergenic | 30.0% |
| CATATTAAAGCCTTTGGTTA+TGG | - | chr8_2:22274452-22274471 | Msa1240040:CDS | 30.0% | |
| TCTCATCAAACCAACATGTT+TGG | - | chr8_2:22271830-22271849 | Msa1240040:CDS | 35.0% | |
| !! | AGGCTTAGTTTGTTAATGAG+AGG | + | chr8_2:22271932-22271951 | None:intergenic | 35.0% |
| TAGAAGACAAGAGAATGGAA+AGG | - | chr8_2:22272017-22272036 | Msa1240040:CDS | 35.0% | |
| GTTACTGTTGCACTACAAAT+AGG | - | chr8_2:22272085-22272104 | Msa1240040:CDS | 35.0% | |
| CATAGAAATGGCTGAAAAAG+AGG | - | chr8_2:22272162-22272181 | Msa1240040:CDS | 35.0% | |
| TTCTGAACATCAACAACCTT+TGG | - | chr8_2:22272198-22272217 | Msa1240040:CDS | 35.0% | |
| ! | ATGAGAATTTGAGAAGGTGT+TGG | + | chr8_2:22272256-22272275 | None:intergenic | 35.0% |
| ACACCTTCTCAAATTCTCAT+TGG | - | chr8_2:22272256-22272275 | Msa1240040:intron | 35.0% | |
| !!! | TTGAAAGTTTTAGAGCACAC+AGG | + | chr8_2:22272301-22272320 | None:intergenic | 35.0% |
| CAACAGATACAACAATCTTC+AGG | - | chr8_2:22272318-22272337 | Msa1240040:intron | 35.0% | |
| TTAGCACATGAATATGAAGG+AGG | - | chr8_2:22273129-22273148 | Msa1240040:intron | 35.0% | |
| TAGCACATGAATATGAAGGA+GGG | - | chr8_2:22273130-22273149 | Msa1240040:intron | 35.0% | |
| GGGCCAAAAATACTAATACT+TGG | - | chr8_2:22273151-22273170 | Msa1240040:intron | 35.0% | |
| AGATGGACACAATACTATTG+AGG | - | chr8_2:22273597-22273616 | Msa1240040:intron | 35.0% | |
| TTATAGGTTTAAGTCTCCCA+TGG | - | chr8_2:22273821-22273840 | Msa1240040:intron | 35.0% | |
| GTAACAAGAAAACTAAGGAG+GGG | - | chr8_2:22273999-22274018 | Msa1240040:intron | 35.0% | |
| ! | AATTGATGGGTGCATCTTTA+TGG | - | chr8_2:22274091-22274110 | Msa1240040:CDS | 35.0% |
| ACATGGATCTCAATACAGAA+AGG | - | chr8_2:22274136-22274155 | Msa1240040:CDS | 35.0% | |
| CATGGATCTCAATACAGAAA+GGG | - | chr8_2:22274137-22274156 | Msa1240040:CDS | 35.0% | |
| ATGGATCTCAATACAGAAAG+GGG | - | chr8_2:22274138-22274157 | Msa1240040:CDS | 35.0% | |
| !! | TGTGATCCTTTTAGAGAATC+TGG | + | chr8_2:22274164-22274183 | None:intergenic | 35.0% |
| AGAACACATGAGAAGAATTG+TGG | - | chr8_2:22274371-22274390 | Msa1240040:CDS | 35.0% | |
| CTTCTTCTGATCTTGGATCA+AGG | - | chr8_2:22272122-22272141 | Msa1240040:CDS | 40.0% | |
| TTCTGATCTTGGATCAAGGA+TGG | - | chr8_2:22272126-22272145 | Msa1240040:CDS | 40.0% | |
| TGAACAACAAGGGTCAGTAT+TGG | - | chr8_2:22272227-22272246 | Msa1240040:intron | 40.0% | |
| GGACCAATGAGAATTTGAGA+AGG | + | chr8_2:22272262-22272281 | None:intergenic | 40.0% | |
| ACAGGACATGAGAATTGTGT+AGG | + | chr8_2:22272283-22272302 | None:intergenic | 40.0% | |
| !! | GTGCTCTGAAAAAGTTGAAG+TGG | + | chr8_2:22272792-22272811 | None:intergenic | 40.0% |
| AGCACATGAATATGAAGGAG+GGG | - | chr8_2:22273131-22273150 | Msa1240040:intron | 40.0% | |
| AGGATAATTCTAAGCTCCCA+TGG | - | chr8_2:22273617-22273636 | Msa1240040:intron | 40.0% | |
| ! | TTACTCTCAAGTCGACTCTA+TGG | + | chr8_2:22273900-22273919 | None:intergenic | 40.0% |
| GGCAAATCATTTGCAGTGAA+AGG | - | chr8_2:22274341-22274360 | Msa1240040:CDS | 40.0% | |
| CATTTGCAGTGAAAGGTGAT+TGG | - | chr8_2:22274348-22274367 | Msa1240040:CDS | 40.0% | |
| AAAGCCTTTGGTTATGGTCA+TGG | - | chr8_2:22274458-22274477 | Msa1240040:CDS | 40.0% | |
| AGAGGAAGAGCTTCTCTAAG+AGG | + | chr8_2:22271914-22271933 | None:intergenic | 45.0% | |
| GACAAGAGAATGGAAAGGCA+TGG | - | chr8_2:22272022-22272041 | Msa1240040:CDS | 45.0% | |
| TGATTCTCTCTCTGCAGAGA+TGG | - | chr8_2:22273580-22273599 | Msa1240040:intron | 45.0% | |
| TAGATGCATATGTGGGGACA+TGG | - | chr8_2:22274119-22274138 | Msa1240040:CDS | 45.0% | |
| AAGGGGCCAGATTCTCTAAA+AGG | - | chr8_2:22274155-22274174 | Msa1240040:CDS | 45.0% | |
| CACAACCAACAGCAATGCTA+AGG | - | chr8_2:22274180-22274199 | Msa1240040:CDS | 45.0% | |
| TCAATGTTGTGCTTGCAACC+TGG | + | chr8_2:22274227-22274246 | None:intergenic | 45.0% | |
| ! | TCTTTGAGAGGCTTTGCTCT+AGG | + | chr8_2:22274254-22274273 | None:intergenic | 45.0% |
| AGCACCATGACCATAACCAA+AGG | + | chr8_2:22274465-22274484 | None:intergenic | 45.0% | |
| ! | GGTTATGGTCATGGTGCTTT+TGG | - | chr8_2:22274467-22274486 | Msa1240040:CDS | 45.0% |
| ! | ATTCATGGTGGAGGATGAGG+AGG | + | chr8_2:22271879-22271898 | None:intergenic | 50.0% |
| ! | AGGATTCATGGTGGAGGATG+AGG | + | chr8_2:22271882-22271901 | None:intergenic | 50.0% |
| AGAAGGAGGATTCATGGTGG+AGG | + | chr8_2:22271888-22271907 | None:intergenic | 50.0% | |
| AGGAGAAGGAGGATTCATGG+TGG | + | chr8_2:22271891-22271910 | None:intergenic | 50.0% | |
| AGGAGGAGAAGGAGGATTCA+TGG | + | chr8_2:22271894-22271913 | None:intergenic | 50.0% | |
| ! | TCTCTAAGAGGAGGAGAAGG+AGG | + | chr8_2:22271902-22271921 | None:intergenic | 50.0% |
| ! | GCTTCTCTAAGAGGAGGAGA+AGG | + | chr8_2:22271905-22271924 | None:intergenic | 50.0% |
| ! | GGAAGAGCTTCTCTAAGAGG+AGG | + | chr8_2:22271911-22271930 | None:intergenic | 50.0% |
| CGACTCTATGGCACCCATAA+TGG | + | chr8_2:22273888-22273907 | None:intergenic | 50.0% | |
| ! | GGTAGCCTTAGCATTGCTGT+TGG | + | chr8_2:22274188-22274207 | None:intergenic | 50.0% |
| CCTGGTGCACAACAATAGCA+TGG | + | chr8_2:22274209-22274228 | None:intergenic | 50.0% | |
| CCATGCTATTGTTGTGCACC+AGG | - | chr8_2:22274206-22274225 | Msa1240040:CDS | 50.0% | |
| !! | TGAGAGGCTTTGCTCTAGGA+TGG | + | chr8_2:22274250-22274269 | None:intergenic | 50.0% |
| ! | ATGGTGGAGGATGAGGAGGA+GGG | + | chr8_2:22271875-22271894 | None:intergenic | 55.0% |
| CTGGTGCAGCACAGTGTTCT+AGG | + | chr8_2:22272703-22272722 | None:intergenic | 55.0% | |
| ! | CATGGTGGAGGATGAGGAGG+AGG | + | chr8_2:22271876-22271895 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 22271827 | 22274520 | 22271827 | ID=Msa1240040;Name=Msa1240040 |
| chr8_2 | mRNA | 22271827 | 22274520 | 22271827 | ID=Msa1240040-mRNA-1;Parent=Msa1240040;Name=Msa1240040-mRNA-1;_AED=0.02;_eAED=0.02;_QI=18|1|0.5|1|1|0.5|2|0|298 |
| chr8_2 | exon | 22271827 | 22272225 | 22271827 | ID=Msa1240040-mRNA-1:exon:7915;Parent=Msa1240040-mRNA-1 |
| chr8_2 | exon | 22274008 | 22274520 | 22274008 | ID=Msa1240040-mRNA-1:exon:7914;Parent=Msa1240040-mRNA-1 |
| chr8_2 | five_prime_UTR | 22274503 | 22274520 | 22274503 | ID=Msa1240040-mRNA-1:five_prime_utr;Parent=Msa1240040-mRNA-1 |
| chr8_2 | CDS | 22274008 | 22274502 | 22274008 | ID=Msa1240040-mRNA-1:cds;Parent=Msa1240040-mRNA-1 |
| chr8_2 | CDS | 22271827 | 22272225 | 22271827 | ID=Msa1240040-mRNA-1:cds;Parent=Msa1240040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
