Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1240720 | XP_003627814.1 | 95.531 | 179 | 6 | 1 | 1 | 179 | 1 | 177 | 1.29e-119 | 345 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1240720 | sp|Q2RAP3|ORR9_ORYSJ | 70.807 | 161 | 42 | 2 | 1 | 160 | 1 | 157 | 9.63e-76 | 228 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1240720 | Q1RU46 | 95.531 | 179 | 6 | 1 | 1 | 179 | 1 | 177 | 6.15e-120 | 345 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1240720 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1240720 | MtrunA17_Chr8g0352871 | 95.531 | 179 | 6 | 1 | 1 | 179 | 1 | 177 | 1.18e-123 | 345 |
| Msa1240720 | MtrunA17_Chr3g0082861 | 80.892 | 157 | 26 | 3 | 8 | 162 | 3 | 157 | 1.30e-84 | 246 |
| Msa1240720 | MtrunA17_Chr7g0256551 | 73.077 | 156 | 41 | 1 | 1 | 155 | 1 | 156 | 1.73e-81 | 241 |
| Msa1240720 | MtrunA17_Chr3g0124861 | 58.125 | 160 | 56 | 2 | 6 | 155 | 19 | 177 | 9.81e-59 | 183 |
| Msa1240720 | MtrunA17_Chr4g0059571 | 54.762 | 168 | 64 | 3 | 4 | 170 | 21 | 177 | 1.47e-53 | 169 |
| Msa1240720 | MtrunA17_Chr5g0414931 | 57.746 | 142 | 56 | 1 | 8 | 149 | 15 | 152 | 2.27e-52 | 167 |
| Msa1240720 | MtrunA17_Chr1g0170741 | 59.859 | 142 | 52 | 2 | 8 | 149 | 7 | 143 | 5.08e-51 | 162 |
| Msa1240720 | MtrunA17_Chr3g0118211 | 52.174 | 161 | 60 | 3 | 4 | 156 | 18 | 169 | 1.41e-50 | 161 |
| Msa1240720 | MtrunA17_Chr3g0128691 | 57.246 | 138 | 49 | 3 | 10 | 145 | 19 | 148 | 3.37e-48 | 154 |
| Msa1240720 | MtrunA17_Chr4g0021731 | 79.787 | 94 | 11 | 1 | 1 | 94 | 3 | 88 | 4.25e-48 | 151 |
| Msa1240720 | MtrunA17_Chr8g0376881 | 29.193 | 161 | 90 | 4 | 11 | 167 | 31 | 171 | 2.96e-15 | 72.8 |
| Msa1240720 | MtrunA17_Chr8g0345901 | 28.777 | 139 | 82 | 1 | 11 | 149 | 38 | 159 | 7.74e-15 | 71.6 |
| Msa1240720 | MtrunA17_Chr7g0275891 | 31.159 | 138 | 76 | 3 | 11 | 148 | 11 | 129 | 1.92e-13 | 67.0 |
| Msa1240720 | MtrunA17_Chr7g0275401 | 30.714 | 140 | 77 | 3 | 9 | 148 | 9 | 128 | 2.09e-13 | 66.6 |
| Msa1240720 | MtrunA17_Chr3g0123131 | 27.273 | 165 | 93 | 4 | 11 | 168 | 19 | 163 | 3.72e-13 | 66.6 |
| Msa1240720 | MtrunA17_Chr1g0149851 | 31.159 | 138 | 75 | 3 | 11 | 148 | 11 | 128 | 8.60e-13 | 65.5 |
| Msa1240720 | MtrunA17_Chr1g0149841 | 30.435 | 138 | 76 | 3 | 11 | 148 | 11 | 128 | 1.35e-12 | 65.1 |
| Msa1240720 | MtrunA17_Chr1g0161431 | 28.276 | 145 | 84 | 3 | 11 | 155 | 17 | 141 | 1.52e-12 | 65.1 |
| Msa1240720 | MtrunA17_Chr4g0074411 | 27.711 | 166 | 99 | 4 | 11 | 176 | 24 | 168 | 3.56e-12 | 63.9 |
| Msa1240720 | MtrunA17_Chr4g0030271 | 30.882 | 136 | 77 | 2 | 11 | 146 | 91 | 209 | 4.05e-12 | 63.5 |
| Msa1240720 | MtrunA17_Chr3g0137101 | 27.381 | 168 | 93 | 4 | 11 | 178 | 14 | 152 | 7.90e-12 | 62.8 |
| Msa1240720 | MtrunA17_Chr4g0067981 | 28.082 | 146 | 85 | 3 | 9 | 154 | 35 | 160 | 1.68e-11 | 62.0 |
| Msa1240720 | MtrunA17_Chr3g0127941 | 27.857 | 140 | 84 | 2 | 9 | 148 | 56 | 178 | 3.75e-11 | 60.8 |
| Msa1240720 | MtrunA17_Chr1g0181811 | 27.941 | 136 | 81 | 1 | 11 | 146 | 87 | 205 | 3.92e-11 | 60.8 |
| Msa1240720 | MtrunA17_Chr7g0276361 | 26.087 | 138 | 85 | 1 | 9 | 146 | 14 | 134 | 8.93e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1240720 | AT2G41310.1 | 53.456 | 217 | 60 | 1 | 1 | 176 | 1 | 217 | 2.83e-75 | 225 |
| Msa1240720 | AT3G57040.2 | 65.868 | 167 | 49 | 2 | 1 | 162 | 1 | 164 | 7.05e-74 | 222 |
| Msa1240720 | AT3G57040.1 | 65.868 | 167 | 49 | 2 | 1 | 162 | 1 | 164 | 7.05e-74 | 222 |
| Msa1240720 | AT1G59940.1 | 61.429 | 140 | 46 | 2 | 7 | 146 | 31 | 162 | 1.33e-55 | 175 |
| Msa1240720 | AT1G59940.2 | 61.429 | 140 | 46 | 2 | 7 | 146 | 123 | 254 | 1.01e-53 | 173 |
| Msa1240720 | AT1G10470.3 | 60.000 | 140 | 48 | 1 | 7 | 146 | 18 | 149 | 1.21e-53 | 171 |
| Msa1240720 | AT1G10470.1 | 60.000 | 140 | 48 | 1 | 7 | 146 | 32 | 163 | 1.21e-53 | 171 |
| Msa1240720 | AT3G48100.1 | 56.757 | 148 | 55 | 2 | 2 | 148 | 18 | 157 | 1.47e-53 | 169 |
| Msa1240720 | AT5G62920.1 | 60.870 | 138 | 46 | 1 | 9 | 146 | 25 | 154 | 1.87e-52 | 166 |
| Msa1240720 | AT1G19050.1 | 53.548 | 155 | 64 | 1 | 8 | 162 | 23 | 169 | 5.04e-52 | 165 |
| Msa1240720 | AT3G56380.1 | 53.793 | 145 | 60 | 1 | 4 | 148 | 15 | 152 | 1.44e-51 | 162 |
| Msa1240720 | AT2G40670.1 | 53.901 | 141 | 60 | 2 | 8 | 148 | 28 | 163 | 3.70e-50 | 159 |
| Msa1240720 | AT1G74890.1 | 55.172 | 145 | 57 | 1 | 8 | 152 | 17 | 153 | 3.91e-50 | 160 |
| Msa1240720 | AT3G56380.2 | 53.425 | 146 | 60 | 2 | 4 | 148 | 15 | 153 | 7.91e-50 | 158 |
| Msa1240720 | AT2G40670.2 | 53.521 | 142 | 60 | 3 | 8 | 148 | 28 | 164 | 2.11e-48 | 155 |
| Msa1240720 | AT2G07440.1 | 45.833 | 120 | 27 | 1 | 95 | 176 | 9 | 128 | 3.81e-26 | 97.4 |
| Msa1240720 | AT1G10470.2 | 64.151 | 53 | 19 | 0 | 94 | 146 | 35 | 87 | 7.58e-18 | 77.4 |
| Msa1240720 | AT1G67710.1 | 29.861 | 144 | 81 | 3 | 11 | 154 | 13 | 136 | 1.80e-13 | 67.8 |
| Msa1240720 | AT5G60100.7 | 31.618 | 136 | 76 | 2 | 11 | 146 | 66 | 184 | 2.14e-13 | 67.4 |
| Msa1240720 | AT5G60100.6 | 31.618 | 136 | 76 | 2 | 11 | 146 | 66 | 184 | 2.14e-13 | 67.4 |
| Msa1240720 | AT5G60100.4 | 31.618 | 136 | 76 | 2 | 11 | 146 | 66 | 184 | 2.14e-13 | 67.4 |
| Msa1240720 | AT5G60100.2 | 31.618 | 136 | 76 | 2 | 11 | 146 | 66 | 184 | 2.49e-13 | 67.4 |
| Msa1240720 | AT5G60100.5 | 31.618 | 136 | 76 | 2 | 11 | 146 | 66 | 184 | 3.60e-13 | 67.0 |
| Msa1240720 | AT5G60100.3 | 31.618 | 136 | 76 | 2 | 11 | 146 | 66 | 184 | 3.60e-13 | 67.0 |
| Msa1240720 | AT5G60100.1 | 31.618 | 136 | 76 | 2 | 11 | 146 | 66 | 184 | 3.60e-13 | 67.0 |
| Msa1240720 | AT5G07210.2 | 31.655 | 139 | 74 | 3 | 10 | 148 | 17 | 134 | 4.52e-13 | 67.0 |
| Msa1240720 | AT2G25180.1 | 28.387 | 155 | 87 | 4 | 3 | 153 | 7 | 141 | 1.20e-12 | 65.5 |
| Msa1240720 | AT5G02810.1 | 29.412 | 136 | 79 | 3 | 11 | 146 | 80 | 198 | 1.72e-12 | 65.1 |
| Msa1240720 | AT5G24470.1 | 27.857 | 140 | 80 | 3 | 11 | 149 | 54 | 173 | 4.86e-11 | 60.8 |
Find 37 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGATAGCTGAACTGGTTTC+AGG | 0.198335 | 8_2:+23366465 | None:intergenic |
| AGTAAGGCCTTGAAATTTCT+TGG | 0.292045 | 8_2:-23367429 | Msa1240720:CDS |
| AGGTATGTCTTTGAAAGATT+TGG | 0.295699 | 8_2:+23366714 | None:intergenic |
| AGAGAATCAGTTCCATGTTT+TGG | 0.307421 | 8_2:-23367691 | Msa1240720:CDS |
| TCTCACCTATTGATCCTAGA+TGG | 0.331221 | 8_2:+23366664 | None:intergenic |
| AAAATCTAAATGCCAACTTT+TGG | 0.343059 | 8_2:+23366326 | None:intergenic |
| TATTGCTTCAGAAATTAATC+AGG | 0.389954 | 8_2:-23367370 | Msa1240720:intron |
| TGATTAATTTCTGAAGCAAT+AGG | 0.390281 | 8_2:+23367372 | None:intergenic |
| CTTACATCTGATAGCTGAAC+TGG | 0.391326 | 8_2:+23366458 | None:intergenic |
| TACAGTGGATTCTGCTAGTA+AGG | 0.426437 | 8_2:-23367445 | Msa1240720:CDS |
| AAGCAAACCAAGAAATTTCA+AGG | 0.430996 | 8_2:+23367422 | None:intergenic |
| ATGTTCCATCTAGGATCAAT+AGG | 0.432186 | 8_2:-23366669 | Msa1240720:intron |
| ATAACAGATTATTGTATGCC+AGG | 0.463952 | 8_2:-23367236 | Msa1240720:CDS |
| GAAATTTCTTGGTTTGCTTG+AGG | 0.464582 | 8_2:-23367418 | Msa1240720:CDS |
| TTTGTTGAAATCAAAAGTTA+AGG | 0.471711 | 8_2:-23366420 | Msa1240720:CDS |
| AACAACCTATCAACATCAAA+AGG | 0.471937 | 8_2:-23366388 | Msa1240720:CDS |
| TTGTAATTGTATCAGATGTT+TGG | 0.481004 | 8_2:-23366510 | Msa1240720:intron |
| TCTGAGGACATTATCACAAC+AGG | 0.486527 | 8_2:+23366694 | None:intergenic |
| CAACATCAAAAGGAAGGGTA+TGG | 0.487124 | 8_2:-23366378 | Msa1240720:CDS |
| CCTCAGAGAATGTTCCATCT+AGG | 0.494035 | 8_2:-23366678 | Msa1240720:CDS |
| TATTGTATGCCAGGGATGAC+CGG | 0.500365 | 8_2:-23367227 | Msa1240720:CDS |
| TGTATCAGATGTTTGGAAGA+GGG | 0.502137 | 8_2:-23366503 | Msa1240720:intron |
| TTGTATCAGATGTTTGGAAG+AGG | 0.508259 | 8_2:-23366504 | Msa1240720:intron |
| TTGATAGAATGTTGATTGAG+AGG | 0.516155 | 8_2:-23367650 | Msa1240720:CDS |
| AGATCATAGCCGGTCATCCC+TGG | 0.522997 | 8_2:+23367218 | None:intergenic |
| ACCTATCAACATCAAAAGGA+AGG | 0.530682 | 8_2:-23366384 | Msa1240720:CDS |
| GATAAAACTAGGCCAAAAGT+TGG | 0.541987 | 8_2:-23366338 | Msa1240720:CDS |
| TATCTTTCAAGTAATGGGCA+TGG | 0.552535 | 8_2:-23367718 | None:intergenic |
| TAACAGATTATTGTATGCCA+GGG | 0.564090 | 8_2:-23367235 | Msa1240720:CDS |
| TATCATCAACAGCCAAAACA+TGG | 0.580138 | 8_2:+23367679 | None:intergenic |
| GTTTGCTTGAGGATGAAATG+AGG | 0.583679 | 8_2:-23367407 | Msa1240720:CDS |
| GTCAATCACCAGATAAAACT+AGG | 0.591896 | 8_2:-23366349 | Msa1240720:CDS |
| GTATCAGATGTTTGGAAGAG+GGG | 0.607171 | 8_2:-23366502 | Msa1240720:intron |
| TATCAGATGTTTGGAAGAGG+GGG | 0.611980 | 8_2:-23366501 | Msa1240720:intron |
| TTGAAATACAGTTACTACAG+TGG | 0.620208 | 8_2:-23367460 | Msa1240720:intron |
| CCTATCAACATCAAAAGGAA+GGG | 0.630110 | 8_2:-23366383 | Msa1240720:CDS |
| CCTAGATGGAACATTCTCTG+AGG | 0.707424 | 8_2:+23366678 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACAAATTTATACAATAAAA+TGG | + | chr8_2:23366736-23366755 | None:intergenic | 10.0% |
| !! | TACAAATTTATACAATAAAA+TGG | + | chr8_2:23366736-23366755 | None:intergenic | 10.0% |
| !!! | TTGTATAGTCTATTATTTTT+TGG | - | chr8_2:23366516-23366535 | Msa1240720:intron | 15.0% |
| !!! | ATTATTTTGCTTTTCTATTT+AGG | - | chr8_2:23367007-23367026 | Msa1240720:intron | 15.0% |
| !!! | GATTAGTTAATTGAAAATTT+GGG | + | chr8_2:23367174-23367193 | None:intergenic | 15.0% |
| !!! | AGATTAGTTAATTGAAAATT+TGG | + | chr8_2:23367175-23367194 | None:intergenic | 15.0% |
| !!! | TTGTATAGTCTATTATTTTT+TGG | - | chr8_2:23366516-23366535 | Msa1240720:intron | 15.0% |
| !!! | ATTATTTTGCTTTTCTATTT+AGG | - | chr8_2:23367007-23367026 | Msa1240720:intron | 15.0% |
| !!! | GATTAGTTAATTGAAAATTT+GGG | + | chr8_2:23367174-23367193 | None:intergenic | 15.0% |
| !!! | AGATTAGTTAATTGAAAATT+TGG | + | chr8_2:23367175-23367194 | None:intergenic | 15.0% |
| !! | TACTGAATTGATAAAGATTA+TGG | - | chr8_2:23366704-23366723 | Msa1240720:CDS | 20.0% |
| !! | TAGGAAACAATTTGAAAAAA+AGG | - | chr8_2:23367026-23367045 | Msa1240720:intron | 20.0% |
| !!! | GATCTTATTTCTTAAATACA+TGG | - | chr8_2:23367048-23367067 | Msa1240720:intron | 20.0% |
| !!! | AAATGCAAAGTCTTATATTA+TGG | - | chr8_2:23367472-23367491 | Msa1240720:intron | 20.0% |
| !!! | ACAATTACAAACAATTTGTT+AGG | + | chr8_2:23367521-23367540 | None:intergenic | 20.0% |
| !! | TTTGTTGAAATCAAAAGTTA+AGG | - | chr8_2:23367621-23367640 | Msa1240720:intron | 20.0% |
| !! | TACTGAATTGATAAAGATTA+TGG | - | chr8_2:23366704-23366723 | Msa1240720:CDS | 20.0% |
| !! | TAGGAAACAATTTGAAAAAA+AGG | - | chr8_2:23367026-23367045 | Msa1240720:intron | 20.0% |
| !!! | GATCTTATTTCTTAAATACA+TGG | - | chr8_2:23367048-23367067 | Msa1240720:intron | 20.0% |
| !!! | AAATGCAAAGTCTTATATTA+TGG | - | chr8_2:23367472-23367491 | Msa1240720:intron | 20.0% |
| !!! | ACAATTACAAACAATTTGTT+AGG | + | chr8_2:23367521-23367540 | None:intergenic | 20.0% |
| !! | TTTGTTGAAATCAAAAGTTA+AGG | - | chr8_2:23367621-23367640 | Msa1240720:intron | 20.0% |
| !! | CATTAAAAGAAGAAGTTTTG+AGG | + | chr8_2:23366419-23366438 | None:intergenic | 25.0% |
| !! | CTCAAAACTTCTTCTTTTAA+TGG | - | chr8_2:23366417-23366436 | Msa1240720:CDS | 25.0% |
| !!! | TGATTAATTTCTGAAGCAAT+AGG | + | chr8_2:23366672-23366691 | None:intergenic | 25.0% |
| ! | TATTGCTTCAGAAATTAATC+AGG | - | chr8_2:23366671-23366690 | Msa1240720:CDS | 25.0% |
| ! | TTTGATTCAATTATTCATGC+AGG | - | chr8_2:23366762-23366781 | Msa1240720:intron | 25.0% |
| ! | TAGACTAATCAAATAAGAAG+TGG | + | chr8_2:23366911-23366930 | None:intergenic | 25.0% |
| ! | TTGAATGCATCAAAAAAGTT+TGG | - | chr8_2:23366980-23366999 | Msa1240720:intron | 25.0% |
| ! | ATCAATTCTCACAATTGATT+TGG | - | chr8_2:23367141-23367160 | Msa1240720:intron | 25.0% |
| ! | ATACTAGATTAATCGTGTTA+TGG | + | chr8_2:23367413-23367432 | None:intergenic | 25.0% |
| ! | TTGTAATTGTATCAGATGTT+TGG | - | chr8_2:23367531-23367550 | Msa1240720:intron | 25.0% |
| !!! | ACTTTTGATTTCAACAAATG+TGG | + | chr8_2:23367619-23367638 | None:intergenic | 25.0% |
| !! | CATTAAAAGAAGAAGTTTTG+AGG | + | chr8_2:23366419-23366438 | None:intergenic | 25.0% |
| !! | CTCAAAACTTCTTCTTTTAA+TGG | - | chr8_2:23366417-23366436 | Msa1240720:CDS | 25.0% |
| !!! | TGATTAATTTCTGAAGCAAT+AGG | + | chr8_2:23366672-23366691 | None:intergenic | 25.0% |
| ! | TATTGCTTCAGAAATTAATC+AGG | - | chr8_2:23366671-23366690 | Msa1240720:CDS | 25.0% |
| ! | TTTGATTCAATTATTCATGC+AGG | - | chr8_2:23366762-23366781 | Msa1240720:intron | 25.0% |
| ! | TAGACTAATCAAATAAGAAG+TGG | + | chr8_2:23366911-23366930 | None:intergenic | 25.0% |
| ! | TTGAATGCATCAAAAAAGTT+TGG | - | chr8_2:23366980-23366999 | Msa1240720:intron | 25.0% |
| ! | ATCAATTCTCACAATTGATT+TGG | - | chr8_2:23367141-23367160 | Msa1240720:intron | 25.0% |
| ! | ATACTAGATTAATCGTGTTA+TGG | + | chr8_2:23367413-23367432 | None:intergenic | 25.0% |
| ! | TTGTAATTGTATCAGATGTT+TGG | - | chr8_2:23367531-23367550 | Msa1240720:intron | 25.0% |
| !!! | ACTTTTGATTTCAACAAATG+TGG | + | chr8_2:23367619-23367638 | None:intergenic | 25.0% |
| ! | TTGATAGAATGTTGATTGAG+AGG | - | chr8_2:23366391-23366410 | Msa1240720:CDS | 30.0% |
| TTGAAATACAGTTACTACAG+TGG | - | chr8_2:23366581-23366600 | Msa1240720:intron | 30.0% | |
| AAGCAAACCAAGAAATTTCA+AGG | + | chr8_2:23366622-23366641 | None:intergenic | 30.0% | |
| ATAACAGATTATTGTATGCC+AGG | - | chr8_2:23366805-23366824 | Msa1240720:intron | 30.0% | |
| TAACAGATTATTGTATGCCA+GGG | - | chr8_2:23366806-23366825 | Msa1240720:intron | 30.0% | |
| TGATCTGTTGAGAAAAATCA+AGG | - | chr8_2:23366840-23366859 | Msa1240720:intron | 30.0% | |
| CAAAAGTAAGCACAAAATTG+TGG | + | chr8_2:23366956-23366975 | None:intergenic | 30.0% | |
| TCTCAATCCAAAATTGTTCA+TGG | - | chr8_2:23367192-23367211 | Msa1240720:intron | 30.0% | |
| ! | ATGCTTTCCATGAACAATTT+TGG | + | chr8_2:23367202-23367221 | None:intergenic | 30.0% |
| AATAAAGTTCATTGATCTGC+AGG | - | chr8_2:23367301-23367320 | Msa1240720:intron | 30.0% | |
| ! | AGGTATGTCTTTGAAAGATT+TGG | + | chr8_2:23367330-23367349 | None:intergenic | 30.0% |
| AACAACCTATCAACATCAAA+AGG | - | chr8_2:23367653-23367672 | Msa1240720:CDS | 30.0% | |
| ! | TTGATAGAATGTTGATTGAG+AGG | - | chr8_2:23366391-23366410 | Msa1240720:CDS | 30.0% |
| TTGAAATACAGTTACTACAG+TGG | - | chr8_2:23366581-23366600 | Msa1240720:intron | 30.0% | |
| AAGCAAACCAAGAAATTTCA+AGG | + | chr8_2:23366622-23366641 | None:intergenic | 30.0% | |
| ATAACAGATTATTGTATGCC+AGG | - | chr8_2:23366805-23366824 | Msa1240720:intron | 30.0% | |
| TAACAGATTATTGTATGCCA+GGG | - | chr8_2:23366806-23366825 | Msa1240720:intron | 30.0% | |
| TGATCTGTTGAGAAAAATCA+AGG | - | chr8_2:23366840-23366859 | Msa1240720:intron | 30.0% | |
| CAAAAGTAAGCACAAAATTG+TGG | + | chr8_2:23366956-23366975 | None:intergenic | 30.0% | |
| TCTCAATCCAAAATTGTTCA+TGG | - | chr8_2:23367192-23367211 | Msa1240720:intron | 30.0% | |
| ! | ATGCTTTCCATGAACAATTT+TGG | + | chr8_2:23367202-23367221 | None:intergenic | 30.0% |
| AATAAAGTTCATTGATCTGC+AGG | - | chr8_2:23367301-23367320 | Msa1240720:intron | 30.0% | |
| ! | AGGTATGTCTTTGAAAGATT+TGG | + | chr8_2:23367330-23367349 | None:intergenic | 30.0% |
| AACAACCTATCAACATCAAA+AGG | - | chr8_2:23367653-23367672 | Msa1240720:CDS | 30.0% | |
| ! | AGAGAATCAGTTCCATGTTT+TGG | - | chr8_2:23366350-23366369 | Msa1240720:CDS | 35.0% |
| TATCATCAACAGCCAAAACA+TGG | + | chr8_2:23366365-23366384 | None:intergenic | 35.0% | |
| AGTAAGGCCTTGAAATTTCT+TGG | - | chr8_2:23366612-23366631 | Msa1240720:intron | 35.0% | |
| !! | GAAATTTCTTGGTTTGCTTG+AGG | - | chr8_2:23366623-23366642 | Msa1240720:intron | 35.0% |
| ! | TTTTCTCAACAGATCATAGC+CGG | + | chr8_2:23366836-23366855 | None:intergenic | 35.0% |
| CTGTTGAGAAAAATCAAGGT+AGG | - | chr8_2:23366844-23366863 | Msa1240720:intron | 35.0% | |
| ! | ATGTTCCATCTAGGATCAAT+AGG | - | chr8_2:23367372-23367391 | Msa1240720:CDS | 35.0% |
| TTGTATCAGATGTTTGGAAG+AGG | - | chr8_2:23367537-23367556 | Msa1240720:intron | 35.0% | |
| TGTATCAGATGTTTGGAAGA+GGG | - | chr8_2:23367538-23367557 | Msa1240720:intron | 35.0% | |
| ACCTATCAACATCAAAAGGA+AGG | - | chr8_2:23367657-23367676 | Msa1240720:CDS | 35.0% | |
| CCTATCAACATCAAAAGGAA+GGG | - | chr8_2:23367658-23367677 | Msa1240720:CDS | 35.0% | |
| GTCAATCACCAGATAAAACT+AGG | - | chr8_2:23367692-23367711 | Msa1240720:CDS | 35.0% | |
| !!! | ACTTTTGGCCTAGTTTTATC+TGG | + | chr8_2:23367703-23367722 | None:intergenic | 35.0% |
| GATAAAACTAGGCCAAAAGT+TGG | - | chr8_2:23367703-23367722 | Msa1240720:CDS | 35.0% | |
| ! | AGAGAATCAGTTCCATGTTT+TGG | - | chr8_2:23366350-23366369 | Msa1240720:CDS | 35.0% |
| TATCATCAACAGCCAAAACA+TGG | + | chr8_2:23366365-23366384 | None:intergenic | 35.0% | |
| AGTAAGGCCTTGAAATTTCT+TGG | - | chr8_2:23366612-23366631 | Msa1240720:intron | 35.0% | |
| !! | GAAATTTCTTGGTTTGCTTG+AGG | - | chr8_2:23366623-23366642 | Msa1240720:intron | 35.0% |
| ! | TTTTCTCAACAGATCATAGC+CGG | + | chr8_2:23366836-23366855 | None:intergenic | 35.0% |
| CTGTTGAGAAAAATCAAGGT+AGG | - | chr8_2:23366844-23366863 | Msa1240720:intron | 35.0% | |
| ! | ATGTTCCATCTAGGATCAAT+AGG | - | chr8_2:23367372-23367391 | Msa1240720:CDS | 35.0% |
| TTGTATCAGATGTTTGGAAG+AGG | - | chr8_2:23367537-23367556 | Msa1240720:intron | 35.0% | |
| TGTATCAGATGTTTGGAAGA+GGG | - | chr8_2:23367538-23367557 | Msa1240720:intron | 35.0% | |
| ACCTATCAACATCAAAAGGA+AGG | - | chr8_2:23367657-23367676 | Msa1240720:CDS | 35.0% | |
| CCTATCAACATCAAAAGGAA+GGG | - | chr8_2:23367658-23367677 | Msa1240720:CDS | 35.0% | |
| GTCAATCACCAGATAAAACT+AGG | - | chr8_2:23367692-23367711 | Msa1240720:CDS | 35.0% | |
| !!! | ACTTTTGGCCTAGTTTTATC+TGG | + | chr8_2:23367703-23367722 | None:intergenic | 35.0% |
| GATAAAACTAGGCCAAAAGT+TGG | - | chr8_2:23367703-23367722 | Msa1240720:CDS | 35.0% | |
| ! | TACAGTGGATTCTGCTAGTA+AGG | - | chr8_2:23366596-23366615 | Msa1240720:intron | 40.0% |
| GTTTGCTTGAGGATGAAATG+AGG | - | chr8_2:23366634-23366653 | Msa1240720:intron | 40.0% | |
| TCTGAGGACATTATCACAAC+AGG | + | chr8_2:23367350-23367369 | None:intergenic | 40.0% | |
| TCTCACCTATTGATCCTAGA+TGG | + | chr8_2:23367380-23367399 | None:intergenic | 40.0% | |
| ATTGTCTATGCAGTTGCGAT+CGG | - | chr8_2:23367436-23367455 | Msa1240720:CDS | 40.0% | |
| GTATCAGATGTTTGGAAGAG+GGG | - | chr8_2:23367539-23367558 | Msa1240720:intron | 40.0% | |
| TATCAGATGTTTGGAAGAGG+GGG | - | chr8_2:23367540-23367559 | Msa1240720:intron | 40.0% | |
| CTTACATCTGATAGCTGAAC+TGG | + | chr8_2:23367586-23367605 | None:intergenic | 40.0% | |
| ! | CCCTTCCTTTTGATGTTGAT+AGG | + | chr8_2:23367661-23367680 | None:intergenic | 40.0% |
| CAACATCAAAAGGAAGGGTA+TGG | - | chr8_2:23367663-23367682 | Msa1240720:CDS | 40.0% | |
| ! | TACAGTGGATTCTGCTAGTA+AGG | - | chr8_2:23366596-23366615 | Msa1240720:intron | 40.0% |
| GTTTGCTTGAGGATGAAATG+AGG | - | chr8_2:23366634-23366653 | Msa1240720:intron | 40.0% | |
| TCTGAGGACATTATCACAAC+AGG | + | chr8_2:23367350-23367369 | None:intergenic | 40.0% | |
| TCTCACCTATTGATCCTAGA+TGG | + | chr8_2:23367380-23367399 | None:intergenic | 40.0% | |
| ATTGTCTATGCAGTTGCGAT+CGG | - | chr8_2:23367436-23367455 | Msa1240720:CDS | 40.0% | |
| GTATCAGATGTTTGGAAGAG+GGG | - | chr8_2:23367539-23367558 | Msa1240720:intron | 40.0% | |
| TATCAGATGTTTGGAAGAGG+GGG | - | chr8_2:23367540-23367559 | Msa1240720:intron | 40.0% | |
| CTTACATCTGATAGCTGAAC+TGG | + | chr8_2:23367586-23367605 | None:intergenic | 40.0% | |
| ! | CCCTTCCTTTTGATGTTGAT+AGG | + | chr8_2:23367661-23367680 | None:intergenic | 40.0% |
| CAACATCAAAAGGAAGGGTA+TGG | - | chr8_2:23367663-23367682 | Msa1240720:CDS | 40.0% | |
| TATTGTATGCCAGGGATGAC+CGG | - | chr8_2:23366814-23366833 | Msa1240720:intron | 45.0% | |
| CCTAGATGGAACATTCTCTG+AGG | + | chr8_2:23367366-23367385 | None:intergenic | 45.0% | |
| CCTCAGAGAATGTTCCATCT+AGG | - | chr8_2:23367363-23367382 | Msa1240720:intron | 45.0% | |
| ! | CTGATAGCTGAACTGGTTTC+AGG | + | chr8_2:23367579-23367598 | None:intergenic | 45.0% |
| TATTGTATGCCAGGGATGAC+CGG | - | chr8_2:23366814-23366833 | Msa1240720:intron | 45.0% | |
| CCTAGATGGAACATTCTCTG+AGG | + | chr8_2:23367366-23367385 | None:intergenic | 45.0% | |
| CCTCAGAGAATGTTCCATCT+AGG | - | chr8_2:23367363-23367382 | Msa1240720:intron | 45.0% | |
| ! | CTGATAGCTGAACTGGTTTC+AGG | + | chr8_2:23367579-23367598 | None:intergenic | 45.0% |
| AGATCATAGCCGGTCATCCC+TGG | + | chr8_2:23366826-23366845 | None:intergenic | 55.0% | |
| AGATCATAGCCGGTCATCCC+TGG | + | chr8_2:23366826-23366845 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 23366334 | 23367729 | 23366334 | ID=Msa1240720;Name=Msa1240720 |
| chr8_2 | mRNA | 23366334 | 23367729 | 23366334 | ID=Msa1240720-mRNA-1;Parent=Msa1240720;Name=Msa1240720-mRNA-1;_AED=0.22;_eAED=0.22;_QI=2|0|0|1|1|0.8|5|0|179 |
| chr8_2 | exon | 23367625 | 23367729 | 23367625 | ID=Msa1240720-mRNA-1:exon:8395;Parent=Msa1240720-mRNA-1 |
| chr8_2 | exon | 23367371 | 23367471 | 23367371 | ID=Msa1240720-mRNA-1:exon:8394;Parent=Msa1240720-mRNA-1 |
| chr8_2 | exon | 23367202 | 23367279 | 23367202 | ID=Msa1240720-mRNA-1:exon:8393;Parent=Msa1240720-mRNA-1 |
| chr8_2 | exon | 23366670 | 23366740 | 23366670 | ID=Msa1240720-mRNA-1:exon:8392;Parent=Msa1240720-mRNA-1 |
| chr8_2 | exon | 23366334 | 23366517 | 23366334 | ID=Msa1240720-mRNA-1:exon:8391;Parent=Msa1240720-mRNA-1 |
| chr8_2 | five_prime_UTR | 23367728 | 23367729 | 23367728 | ID=Msa1240720-mRNA-1:five_prime_utr;Parent=Msa1240720-mRNA-1 |
| chr8_2 | CDS | 23367625 | 23367727 | 23367625 | ID=Msa1240720-mRNA-1:cds;Parent=Msa1240720-mRNA-1 |
| chr8_2 | CDS | 23367371 | 23367471 | 23367371 | ID=Msa1240720-mRNA-1:cds;Parent=Msa1240720-mRNA-1 |
| chr8_2 | CDS | 23367202 | 23367279 | 23367202 | ID=Msa1240720-mRNA-1:cds;Parent=Msa1240720-mRNA-1 |
| chr8_2 | CDS | 23366670 | 23366740 | 23366670 | ID=Msa1240720-mRNA-1:cds;Parent=Msa1240720-mRNA-1 |
| chr8_2 | CDS | 23366334 | 23366517 | 23366334 | ID=Msa1240720-mRNA-1:cds;Parent=Msa1240720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
