AlfalfaGEDB | Msa1241710

M. sativa cultivar zhongmu-4 / Msa1241710

KEGG: -
GO: -
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1241710	ABE88100.1	65.690	239	9	3	1	166	16	254	3.41e-97	291

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1241710	sp\|Q39086\|SD17_ARATH	39.583	240	67	4	5	166	604	843	2.81e-47	167

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1241710	Q1S5K6	65.690	239	9	3	1	166	16	254	1.63e-97	291

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1241710	MtrunA17_Chr8g0354391	65.690	239	9	3	1	166	16	254	3.13e-101	291
Msa1241710	MtrunA17_Chr8g0354421	60.426	235	19	4	5	166	449	682	3.23e-81	253
Msa1241710	MtrunA17_Chr8g0354431	59.574	235	21	4	5	166	428	661	2.84e-79	247
Msa1241710	MtrunA17_Chr8g0354441	58.723	235	23	4	5	166	436	669	5.35e-78	244
Msa1241710	MtrunA17_Chr8g0354281	57.872	235	24	5	5	166	421	653	3.83e-76	239
Msa1241710	MtrunA17_Chr8g0354351	54.468	235	33	4	5	166	419	652	1.00e-71	227
Msa1241710	MtrunA17_Chr8g0354331	54.043	235	34	4	5	166	186	419	1.19e-71	221
Msa1241710	MtrunA17_Chr3g0081011	52.766	235	37	4	5	166	425	658	1.23e-65	211
Msa1241710	MtrunA17_Chr3g0081001	52.766	235	37	4	5	166	429	662	5.39e-65	210
Msa1241710	MtrunA17_Chr3g0082941	50.213	235	34	5	5	166	259	483	1.43e-61	197

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1241710	AT1G65790.1	39.583	240	67	4	5	166	604	843	2.86e-48	167
Msa1241710	AT4G00960.2	39.256	242	70	4	2	166	44	285	1.25e-47	156
Msa1241710	AT1G65800.1	41.250	240	63	4	5	166	608	847	5.79e-47	163
Msa1241710	AT4G00960.3	38.819	237	68	4	7	166	56	292	7.41e-47	154
Msa1241710	AT4G00960.1	38.819	237	68	4	7	166	143	379	4.66e-46	154
Msa1241710	AT4G21390.1	41.949	236	63	4	5	166	614	849	8.68e-46	160
Msa1241710	AT4G03230.3	41.453	234	63	5	7	166	612	845	1.58e-45	159
Msa1241710	AT4G03230.7	41.453	234	63	5	7	166	620	853	1.67e-45	159
Msa1241710	AT1G11300.2	41.667	228	66	4	5	166	579	805	1.87e-45	159
Msa1241710	AT4G03230.2	41.453	234	63	5	7	166	677	910	1.92e-45	159

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Find 28 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCATAAGCATCTAGAT+TGG	0.457670	8_2:-25449095	Msa1241710:CDS
AACCCAGCCATAGCATATTC+TGG	0.352682	8_2:+25448764	None:intergenic
AACTGAAAATGCTGGTTGAT+TGG	0.389546	8_2:+25448086	None:intergenic
AATCTTGGTATTAACTATCT+TGG	0.377507	8_2:+25447976	None:intergenic
AATGCTGGTTGATTGGGTTC+TGG	0.404525	8_2:+25448093	None:intergenic
ACTCCCTAGCATACGAACGA+CGG	0.680674	8_2:+25448131	None:intergenic
ACTGAAAATGCTGGTTGATT+GGG	0.465534	8_2:+25448087	None:intergenic
ACTTGGAAACTCTGGTGTGA+AGG	0.549176	8_2:-25448279	Msa1241710:CDS
AGGACTGCTATATCTTCATG+AGG	0.637088	8_2:-25449037	Msa1241710:CDS
ATCAACTGAATAATTATCCT+TGG	0.406776	8_2:+25448023	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTACGACTAAGCATTATCAA+TGG	-	chr8_2:25448041-25448060	Msa1241710:CDS	30.0%
TGAAGTTGAATCATCATTCT+TGG	+	chr8_2:25449060-25449079	None:intergenic	30.0%
TTCAACTTCAAAAACTTCCA+AGG	-	chr8_2:25449070-25449089	Msa1241710:CDS	30.0%
TTACGACTAAGCATTATCAA+TGG	-	chr8_2:25448041-25448060	Msa1241710:CDS	30.0%
TGAAGTTGAATCATCATTCT+TGG	+	chr8_2:25449060-25449079	None:intergenic	30.0%
TTCAACTTCAAAAACTTCCA+AGG	-	chr8_2:25449070-25449089	Msa1241710:CDS	30.0%
ATCATCTAGAAGAACATTGC+TGG	+	chr8_2:25448135-25448154	None:intergenic	35.0%
ACTTGCAACTAATGCTTACT+AGG	+	chr8_2:25448246-25448265	None:intergenic	35.0%
TAAGCATGATCAATGTAGCA+AGG	+	chr8_2:25448633-25448652	None:intergenic	35.0%
CAAGTCTGCACACAAATATA+TGG	+	chr8_2:25448816-25448835	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	25447990	25449142	25447990	ID=Msa1241710;Name=Msa1241710
chr8_2	mRNA	25447990	25449142	25447990	ID=Msa1241710-mRNA-1;Parent=Msa1241710;Name=Msa1241710-mRNA-1;_AED=0.43;_eAED=0.43;_QI=0\|0\|0\|1\|1\|1\|4\|0\|166
chr8_2	exon	25448949	25449142	25448949	ID=Msa1241710-mRNA-1:exon:8980;Parent=Msa1241710-mRNA-1
chr8_2	exon	25448715	25448799	25448715	ID=Msa1241710-mRNA-1:exon:8979;Parent=Msa1241710-mRNA-1
chr8_2	exon	25448274	25448301	25448274	ID=Msa1241710-mRNA-1:exon:8978;Parent=Msa1241710-mRNA-1
chr8_2	exon	25447990	25448183	25447990	ID=Msa1241710-mRNA-1:exon:8977;Parent=Msa1241710-mRNA-1
chr8_2	CDS	25448949	25449142	25448949	ID=Msa1241710-mRNA-1:cds;Parent=Msa1241710-mRNA-1
chr8_2	CDS	25448715	25448799	25448715	ID=Msa1241710-mRNA-1:cds;Parent=Msa1241710-mRNA-1
chr8_2	CDS	25448274	25448301	25448274	ID=Msa1241710-mRNA-1:cds;Parent=Msa1241710-mRNA-1
chr8_2	CDS	25447990	25448183	25447990	ID=Msa1241710-mRNA-1:cds;Parent=Msa1241710-mRNA-1

Gene Sequence

>Msa1241710

ATGTTCCTCTGCTTGACAGATAAGGAAAAGCATAAGCATCTAGATTGGAGATTACGACTAAGCATTATCAATGGAATTGCAAAAGGACTGCTATATCTTCATGAGGATTCTCGACTTAGAGTAATCCACAGAGATCTGAAAGCCAGCAATGTTCTTCTAGATGATGAAATGAATCCAAAAATATCAGATTTCGGTGGATACATGGCTCCAGAATATGCTATGGCTGGGTTATTTTCAGTGAAATGCGATGTTTTCAGCTTTGGAGTTCTTATATTAGAAACTTGGAAACTCTGGTGTGAAGGAAAAAAAGATGCAGCAGATCGACCAACCATGTCCACCGTCGTTCGTATGCTAGGGAGTGATACAGCAGTCCTTCCAGAACCCAATCAACCAGCATTTTCAGTTGGGCGAATGTCCAAGAATGATGATTCAACTTCAAAAACTTCCAAGGATAATTATTCAGTTGATGAAGTAACTCTAACTATTGTTTCACCAAGATAG

Protein sequence

>Msa1241710

MFLCLTDKEKHKHLDWRLRLSIINGIAKGLLYLHEDSRLRVIHRDLKASNVLLDDEMNPKISDFGGYMAPEYAMAGLFSVKCDVFSFGVLILETWKLWCEGKKDAADRPTMSTVVRMLGSDTAVLPEPNQPAFSVGRMSKNDDSTSKTSKDNYSVDEVTLTIVSPR*